AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 120 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTTGCACTACTTTATT+TGG 0.121328 1_3:+67569974 None:intergenic
CTTCATAAATATTTGAAAAT+AGG 0.164201 1_3:+67570364 None:intergenic
CTAAAATATTTGTTGAAATA+TGG 0.207446 1_3:-67570072 Msa0135820:three_prime_UTR
TCTTACACTTGTTCTGCTTT+AGG 0.209814 1_3:+67570510 None:intergenic
TTTCATCATTGAAGGATTTC+AGG 0.216204 1_3:-67572438 Msa0135820:intron
GTAGATATGATTCGTGAATA+TGG 0.249264 1_3:-67570721 Msa0135820:three_prime_UTR
CATTTGGTATATAACATTAT+TGG 0.256988 1_3:+67572801 None:intergenic
AATCGTTAGTATTATTAGTT+TGG 0.257470 1_3:-67573202 Msa0135820:CDS
TCCTCACTTGTTTGAATACT+TGG 0.277969 1_3:+67573043 None:intergenic
ATTGATATCAATTACTTTCC+TGG 0.288993 1_3:-67570676 Msa0135820:intron
CTTGCAAGAGAAATGAAATT+TGG 0.289856 1_3:+67574924 None:intergenic
TATAGAAAAGAAGAGGAATT+AGG 0.291933 1_3:+67575255 None:intergenic
ACAAGGCTGGCTGAGCTTAT+AGG 0.297593 1_3:-67572837 Msa0135820:exon
AAAGATTTGATCTTTGAATC+AGG 0.300677 1_3:-67575100 Msa0135820:five_prime_UTR
ACTTGTTTGAATACTTGGTT+TGG 0.321358 1_3:+67573048 None:intergenic
TCTTTAAGATTTATATTGTT+GGG 0.323070 1_3:-67571131 Msa0135820:three_prime_UTR
CTTCCAACTTCTCTTGCTTT+AGG 0.340512 1_3:+67570475 None:intergenic
CTTGTTTGAATACTTGGTTT+GGG 0.341169 1_3:+67573049 None:intergenic
TATTGTTGGGGAATACATAA+AGG 0.342629 1_3:-67571118 Msa0135820:three_prime_UTR
AGCATGAACATTCTATTCAT+TGG 0.350260 1_3:+67570178 None:intergenic
AATAGAATGTTCATGCTTAG+TGG 0.358768 1_3:-67570172 Msa0135820:three_prime_UTR
CTCTTTAAGATTTATATTGT+TGG 0.359704 1_3:-67571132 Msa0135820:three_prime_UTR
ACACCCACCAAGACCTTTGT+TGG 0.369643 1_3:-67570881 Msa0135820:three_prime_UTR
CCAGCTTTGGTGACTTCATA+AGG 0.370201 1_3:+67571969 None:intergenic
GGCCGGACAACCACATCTTC+TGG 0.373243 1_3:-67573153 Msa0135820:CDS
AGCTCGCGTTTACTGATATT+AGG 0.375570 1_3:+67571075 None:intergenic
TAACAACATTGTCTATAAAC+TGG 0.377901 1_3:-67570119 Msa0135820:three_prime_UTR
ATTTGACATTGTCTTGCATA+AGG 0.382180 1_3:-67573577 Msa0135820:intron
TAGCGACTATCACAATAATA+TGG 0.384536 1_3:-67572884 Msa0135820:CDS
CCTTATGAAGTCACCAAAGC+TGG 0.387765 1_3:-67571969 Msa0135820:three_prime_UTR
ATCGTTAGTATTATTAGTTT+GGG 0.392746 1_3:-67573201 Msa0135820:CDS
GGAATCTCACCGGCAATACT+AGG 0.399683 1_3:+67570976 None:intergenic
TAACCAGACACGGTTGCATT+TGG 0.400360 1_3:+67572785 None:intergenic
GTTTATAGACAATGTTGTTA+AGG 0.401644 1_3:+67570122 None:intergenic
ATACCAAATGCAACCGTGTC+TGG 0.408781 1_3:-67572788 Msa0135820:three_prime_UTR
CGGCAACTTCAACCCAGCTT+TGG 0.416268 1_3:+67571956 None:intergenic
GATCTTGATCCTAGTATTGC+CGG 0.427389 1_3:-67570985 Msa0135820:intron
CTACAAGAGTTTGTCAATCA+TGG 0.430927 1_3:-67571255 Msa0135820:intron
ATTGTTGTGAGTGATGAAAT+TGG 0.432197 1_3:+67575201 None:intergenic
TTCAGAGCTTGAACCTCCAC+TGG 0.437347 1_3:-67571280 Msa0135820:three_prime_UTR
GTAAAGACATGCTCGTAGTC+TGG 0.437470 1_3:+67570548 None:intergenic
ACTTCATAAGGAATAGTAGA+TGG 0.444777 1_3:+67571981 None:intergenic
AGCCTCTCCAACAAAGGTCT+TGG 0.445162 1_3:+67570874 None:intergenic
AAAAGAGCTTCGTCATAGAT+TGG 0.446522 1_3:-67570848 Msa0135820:intron
CTGCCTAAAGCAAGAGAAGT+TGG 0.446556 1_3:-67570478 Msa0135820:three_prime_UTR
TGGGTCAGAAAATTGTTGTT+GGG 0.450840 1_3:-67574986 Msa0135820:five_prime_UTR
CATTAAGTACACGAGGAATC+TGG 0.453868 1_3:-67572693 Msa0135820:intron
TGTGTGTGTGTAATTTATAA+TGG 0.455315 1_3:+67575229 None:intergenic
CTCTCCAACAAAGGTCTTGG+TGG 0.458592 1_3:+67570877 None:intergenic
ATCCAGAAGATGTGGTTGTC+CGG 0.460075 1_3:+67573151 None:intergenic
TTGGGTCAGAAAATTGTTGT+TGG 0.460458 1_3:-67574987 Msa0135820:five_prime_UTR
ATTTGTTCTTTCCAGTTGTT+AGG 0.472300 1_3:-67573360 Msa0135820:intron
TAGATATGATTCGTGAATAT+GGG 0.472467 1_3:-67570720 Msa0135820:three_prime_UTR
GCTGCTGCACATGAAACTCT+TGG 0.473192 1_3:+67571024 None:intergenic
GCTGGCTGAGCTTATAGGTT+AGG 0.474141 1_3:-67572832 Msa0135820:exon
TGTAAATGTTGAATTGCATC+AGG 0.481257 1_3:+67572382 None:intergenic
CAAATTTCATTTCTCTTGCA+AGG 0.481455 1_3:-67574923 Msa0135820:intron
AAGATTTGATCTTTGAATCA+GGG 0.482924 1_3:-67575099 Msa0135820:five_prime_UTR
CACATGAAACTCTTGGAAAA+CGG 0.483083 1_3:+67571031 None:intergenic
TTATGCAAGACAATGTCAAA+TGG 0.500174 1_3:+67573579 None:intergenic
CACCAAGACCTTTGTTGGAG+AGG 0.502650 1_3:-67570876 Msa0135820:three_prime_UTR
TTGTTTGAATACTTGGTTTG+GGG 0.506145 1_3:+67573050 None:intergenic
TGTTTGAATACTTGGTTTGG+GGG 0.507717 1_3:+67573051 None:intergenic
ATTATGAGAATTGAAAATGA+TGG 0.510474 1_3:+67575172 None:intergenic
TCCAGTTGTTAGGCGAGGAA+TGG 0.516509 1_3:-67573350 Msa0135820:intron
GGATCAAGAACGAATACATC+GGG 0.519070 1_3:+67572406 None:intergenic
CCACATCTTGAAGCATGGAT+TGG 0.521285 1_3:+67572353 None:intergenic
CATCTTGAAGCATGGATTGG+CGG 0.525990 1_3:+67572356 None:intergenic
CTTTAAGATTTATATTGTTG+GGG 0.527390 1_3:-67571130 Msa0135820:three_prime_UTR
GCTGGGTTGAAGTTGCCGTT+AGG 0.530540 1_3:-67571951 Msa0135820:intron
TTTGCAAGCCTCTCCAACAA+AGG 0.530921 1_3:+67570868 None:intergenic
ATCCACCACATCTTGAAGCA+TGG 0.535346 1_3:+67572348 None:intergenic
TTATGAGAATTGAAAATGAT+GGG 0.549153 1_3:+67575173 None:intergenic
TTTGGGAGTTGAGTATGACA+TGG 0.550445 1_3:-67573184 Msa0135820:CDS
AATTTCTTAAAGAACAAGGC+TGG 0.550507 1_3:-67572850 Msa0135820:CDS
ATCAAATTTCTTAAAGAACA+AGG 0.557356 1_3:-67572854 Msa0135820:CDS
CCAATCCATGCTTCAAGATG+TGG 0.557398 1_3:-67572353 Msa0135820:three_prime_UTR
TTCTTTCCAGTTGTTAGGCG+AGG 0.558531 1_3:-67573355 Msa0135820:intron
TGGTAGAAATTGGGACAGAG+TGG 0.560116 1_3:+67570029 None:intergenic
TATGTGTAATGCAGGAGCAA+GGG 0.560921 1_3:-67573651 Msa0135820:intron
AGATTTGATCTTTGAATCAG+GGG 0.562044 1_3:-67575098 Msa0135820:five_prime_UTR
GATGACTAACTTCTGACAGC+TGG 0.564814 1_3:-67572726 Msa0135820:three_prime_UTR
CTTATGAAGTCACCAAAGCT+GGG 0.565266 1_3:-67571968 Msa0135820:three_prime_UTR
TTATGTGTAATGCAGGAGCA+AGG 0.565876 1_3:-67573652 Msa0135820:intron
AGTTGCAAAACCTCTAGTTG+TGG 0.567026 1_3:-67571355 Msa0135820:three_prime_UTR
ATCCATGCTTCAAGATGTGG+TGG 0.574463 1_3:-67572350 Msa0135820:three_prime_UTR
TACAAGTACAATGTGAAAGT+AGG 0.575523 1_3:+67573288 None:intergenic
TGAAAGTAGGCTGAAGTGAG+TGG 0.580145 1_3:+67573301 None:intergenic
GAGTATGACATGGAGGTGAT+TGG 0.583214 1_3:-67573174 Msa0135820:CDS
TCTGATCATGATTCATGATG+AGG 0.583455 1_3:+67573088 None:intergenic
CGCGAGCTATCAAAAGTCGC+AGG 0.584140 1_3:-67571060 Msa0135820:three_prime_UTR
AGATATAATGAAAGCTGCAT+CGG 0.587786 1_3:-67572752 Msa0135820:three_prime_UTR
ACTATCACAATAATATGGCA+TGG 0.590368 1_3:-67572879 Msa0135820:CDS
TATAATGAAAGCTGCATCGG+AGG 0.592961 1_3:-67572749 Msa0135820:three_prime_UTR
TCTCCAACAAAGGTCTTGGT+GGG 0.597564 1_3:+67570878 None:intergenic
ATGACATGGAGGTGATTGGC+CGG 0.599011 1_3:-67573170 Msa0135820:CDS
GCACTGCCATCCACAACTAG+AGG 0.603312 1_3:+67571345 None:intergenic
AACAAGCCACTGTCAGAACA+AGG 0.605835 1_3:-67573603 Msa0135820:five_prime_UTR
TAAACTGGCACGAAATGTCA+AGG 0.606576 1_3:-67570104 Msa0135820:three_prime_UTR
AAGCATATAACTAGCTACAA+AGG 0.610187 1_3:+67569999 None:intergenic
ATGTGTAATGCAGGAGCAAG+GGG 0.610801 1_3:-67573650 Msa0135820:intron
GAAATGAAATTTATCAATCG+CGG 0.611747 1_3:+67575144 None:intergenic
GCAAAACCTCTAGTTGTGGA+TGG 0.613529 1_3:-67571351 Msa0135820:three_prime_UTR
GGAATGGCGAGAGATTATTG+AGG 0.614262 1_3:-67573334 Msa0135820:five_prime_UTR
CTAAACTTATCTGAGTGCAA+TGG 0.614593 1_3:-67572325 Msa0135820:intron
ATCTATAAAATAACCAGACA+CGG 0.620774 1_3:+67572775 None:intergenic
ATAATGAAAGCTGCATCGGA+GGG 0.621390 1_3:-67572748 Msa0135820:three_prime_UTR
AGAAGTGATGGCGAAATCTG+AGG 0.629932 1_3:-67575027 Msa0135820:five_prime_UTR
AATGGACCTTGTTCTGACAG+TGG 0.636759 1_3:+67573597 None:intergenic
AACTCTTGTAGAACCAGTGG+AGG 0.639928 1_3:+67571267 None:intergenic
AGGATCAAGAACGAATACAT+CGG 0.641347 1_3:+67572405 None:intergenic
ACAAACTCTTGTAGAACCAG+TGG 0.644820 1_3:+67571264 None:intergenic
TTGTAATAACTAGCTGACGA+GGG 0.649097 1_3:+67572015 None:intergenic
GATTCGTGAATATGGGACGA+AGG 0.655124 1_3:-67570713 Msa0135820:three_prime_UTR
GGGAATACATAAAGGTTGTG+AGG 0.657084 1_3:-67571110 Msa0135820:three_prime_UTR
GGGAGTTGAGTATGACATGG+AGG 0.666502 1_3:-67573181 Msa0135820:CDS
TTTGTAATAACTAGCTGACG+AGG 0.667968 1_3:+67572014 None:intergenic
AAATGTTGAATTGCATCAGG+AGG 0.678092 1_3:+67572385 None:intergenic
TGTGTAGTATCCAGAAGATG+TGG 0.688418 1_3:+67573143 None:intergenic
AATAATACATTAAGTACACG+AGG 0.715214 1_3:-67572700 Msa0135820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGTTTTTTTTTTTAAAAAA+AGG - chr1_3:67571793-67571812 Msa0135820:intron 10.0%
!!! AATTAGTAATTACATATTTT+CGG + chr1_3:67572749-67572768 None:intergenic 10.0%
!! AAAATATGTAATTACTAATT+AGG - chr1_3:67572749-67572768 Msa0135820:three_prime_UTR 10.0%
!! AAATATGTAATTACTAATTA+GGG - chr1_3:67572750-67572769 Msa0135820:three_prime_UTR 10.0%
!!! TTTTTTAACTTTTTGTTTTA+CGG - chr1_3:67574682-67574701 Msa0135820:intron 10.0%
!!! TTAAAGTGATTTTTTTTTAG+TGG - chr1_3:67570464-67570483 Msa0135820:three_prime_UTR 15.0%
!!! AACTTAAGCTATATTTTTAT+CGG - chr1_3:67571492-67571511 Msa0135820:intron 15.0%
!! TTAAAAAAAGGTTTCATTTA+TGG - chr1_3:67571805-67571824 Msa0135820:intron 15.0%
!! TTAATCTAAATAATTTGGTT+AGG - chr1_3:67572275-67572294 Msa0135820:intron 15.0%
!! TATTGTAATTTATCTATTCA+TGG + chr1_3:67572683-67572702 None:intergenic 15.0%
!! AAAATTTGAAAGGAAAAAAA+AGG + chr1_3:67573906-67573925 None:intergenic 15.0%
!!! TTTTGTTTTCCTTTTTTATT+TGG - chr1_3:67574109-67574128 Msa0135820:intron 15.0%
!!! TTTGTTTTCCTTTTTTATTT+GGG - chr1_3:67574110-67574129 Msa0135820:intron 15.0%
!!! TCTTTAAGATTTATATTGTT+GGG - chr1_3:67574151-67574170 Msa0135820:intron 15.0%
!! CTTCATAAATATTTGAAAAT+AGG + chr1_3:67574921-67574940 None:intergenic 15.0%
!!! CTATTTTCAAATATTTATGA+AGG - chr1_3:67574919-67574938 Msa0135820:intron 15.0%
!!! CTAAAATATTTGTTGAAATA+TGG - chr1_3:67575210-67575229 Msa0135820:five_prime_UTR 15.0%
!! TTATGAGAATTGAAAATGAT+GGG + chr1_3:67570112-67570131 None:intergenic 20.0%
!! ATTATGAGAATTGAAAATGA+TGG + chr1_3:67570113-67570132 None:intergenic 20.0%
!!! TCATTTTCAATTCTCATAAT+CGG - chr1_3:67570113-67570132 Msa0135820:three_prime_UTR 20.0%
!! AAGAACAAAAAGAAAATCAT+TGG + chr1_3:67570403-67570422 None:intergenic 20.0%
!! AAAACATAAAAAGTAAAACG+TGG + chr1_3:67570446-67570465 None:intergenic 20.0%
!!! AAACTCTGTTTTTCTTTTTT+TGG - chr1_3:67570576-67570595 Msa0135820:intron 20.0%
!!! TAATTTTTTATGAGAATCAG+AGG - chr1_3:67570976-67570995 Msa0135820:intron 20.0%
!!! TTCTTCTTTTATAACATTCA+TGG - chr1_3:67572047-67572066 Msa0135820:intron 20.0%
!! AATCGTTAGTATTATTAGTT+TGG - chr1_3:67572080-67572099 Msa0135820:intron 20.0%
!!! ATCGTTAGTATTATTAGTTT+GGG - chr1_3:67572081-67572100 Msa0135820:intron 20.0%
!! TGTGGTTAATCTAAATAATT+TGG - chr1_3:67572270-67572289 Msa0135820:intron 20.0%
!! ATCAAATTTCTTAAAGAACA+AGG - chr1_3:67572428-67572447 Msa0135820:intron 20.0%
!! CATTTGGTATATAACATTAT+TGG + chr1_3:67572484-67572503 None:intergenic 20.0%
!!! TCAACTATTTTTGTACTTTT+TGG - chr1_3:67573129-67573148 Msa0135820:CDS 20.0%
!! CAACTTGAAAAAATGAAAAA+AGG + chr1_3:67573172-67573191 None:intergenic 20.0%
!! GTATATTATATACTAGCTAT+TGG - chr1_3:67573432-67573451 Msa0135820:intron 20.0%
!!! CTCTTTAAGATTTATATTGT+TGG - chr1_3:67574150-67574169 Msa0135820:intron 20.0%
!!! CTTTAAGATTTATATTGTTG+GGG - chr1_3:67574152-67574171 Msa0135820:intron 20.0%
! TATAGAAAAGAAGAGGAATT+AGG + chr1_3:67570030-67570049 None:intergenic 25.0%
!!! ATGGTTTTATAGAAAAGAAG+AGG + chr1_3:67570037-67570056 None:intergenic 25.0%
! TGTGTGTGTGTAATTTATAA+TGG + chr1_3:67570056-67570075 None:intergenic 25.0%
! GAAATGAAATTTATCAATCG+CGG + chr1_3:67570141-67570160 None:intergenic 25.0%
! AAAGATTTGATCTTTGAATC+AGG - chr1_3:67570182-67570201 Msa0135820:three_prime_UTR 25.0%
! AAGATTTGATCTTTGAATCA+GGG - chr1_3:67570183-67570202 Msa0135820:three_prime_UTR 25.0%
!!! AAGTGATTTTTTTTTAGTGG+TGG - chr1_3:67570467-67570486 Msa0135820:three_prime_UTR 25.0%
!!! AGTGATTTTTTTTTAGTGGT+GGG - chr1_3:67570468-67570487 Msa0135820:three_prime_UTR 25.0%
! AAGAAAAACAGAGTTTACAA+TGG + chr1_3:67570572-67570591 None:intergenic 25.0%
!!! CTTTTGTTGTTACTTTTTGT+CGG - chr1_3:67570601-67570620 Msa0135820:intron 25.0%
!! TACAAGAAATCTAAAAGTGT+CGG + chr1_3:67570756-67570775 None:intergenic 25.0%
! ATTGTTCATAAGAAAGATAC+CGG - chr1_3:67570910-67570929 Msa0135820:intron 25.0%
!! TTCCTTGTAATTTTAAATCC+CGG + chr1_3:67570932-67570951 None:intergenic 25.0%
!! TATAATTTGTCTTTGTGAGA+TGG - chr1_3:67570953-67570972 Msa0135820:intron 25.0%
! AAAACTTACATGACTTTACA+TGG - chr1_3:67571059-67571078 Msa0135820:three_prime_UTR 25.0%
! CAAATCAATATTGTCAACTA+TGG + chr1_3:67571358-67571377 None:intergenic 25.0%
!! CATAGTTGACAATATTGATT+TGG - chr1_3:67571356-67571375 Msa0135820:three_prime_UTR 25.0%
!!! AATATTGATTTGGATAGTCA+AGG - chr1_3:67571366-67571385 Msa0135820:intron 25.0%
! AAATTATTAACACTCAACAG+TGG - chr1_3:67571445-67571464 Msa0135820:intron 25.0%
!!! ATTTTTATCGGTTCAATGTT+TGG - chr1_3:67571504-67571523 Msa0135820:intron 25.0%
!! CTGCATTACACATAATTTTT+AGG + chr1_3:67571625-67571644 None:intergenic 25.0%
! CTAAAAATTATGTGTAATGC+AGG - chr1_3:67571623-67571642 Msa0135820:intron 25.0%
! TAAATAATTTGGTTAGGCAT+TGG - chr1_3:67572281-67572300 Msa0135820:intron 25.0%
! ATCTATAAAATAACCAGACA+CGG + chr1_3:67572510-67572529 None:intergenic 25.0%
! AATAATACATTAAGTACACG+AGG - chr1_3:67572582-67572601 Msa0135820:intron 25.0%
!! AAAAAGTCAAATTTCTGAAG+AGG + chr1_3:67572619-67572638 None:intergenic 25.0%
! AATCCTTCAATGATGAAAAA+GGG + chr1_3:67572842-67572861 None:intergenic 25.0%
! AAATCCTTCAATGATGAAAA+AGG + chr1_3:67572843-67572862 None:intergenic 25.0%
!!! GTTAACTACTGTTGTTTTAT+AGG - chr1_3:67573232-67573251 Msa0135820:CDS 25.0%
!! ATAACAGTGTTGTTAAATAG+CGG - chr1_3:67573487-67573506 Msa0135820:intron 25.0%
!! TTGACAACATTTTGTACAAA+TGG + chr1_3:67573571-67573590 None:intergenic 25.0%
!!! TTGTTTTATTAGCCAAAGAT+TGG - chr1_3:67573751-67573770 Msa0135820:intron 25.0%
! CTAAATAGTAAACCAATCTT+TGG + chr1_3:67573766-67573785 None:intergenic 25.0%
! TTTGCAACTGAAAATTTGAA+AGG + chr1_3:67573916-67573935 None:intergenic 25.0%
! TAAATAACACAGAATGATTG+CGG + chr1_3:67574073-67574092 None:intergenic 25.0%
! AGTTGAAATGTTTCATCTTA+TGG + chr1_3:67574358-67574377 None:intergenic 25.0%
! TAGATATGATTCGTGAATAT+GGG - chr1_3:67574562-67574581 Msa0135820:intron 25.0%
! ATTGATATCAATTACTTTCC+TGG - chr1_3:67574606-67574625 Msa0135820:intron 25.0%
! GTTTATAGACAATGTTGTTA+AGG + chr1_3:67575163-67575182 None:intergenic 25.0%
! TAACAACATTGTCTATAAAC+TGG - chr1_3:67575163-67575182 Msa0135820:five_prime_UTR 25.0%
! AAAGTTTGCACTACTTTATT+TGG + chr1_3:67575311-67575330 None:intergenic 25.0%
!!! TGTGGATTGGGATTTTTTTT+GGG + chr1_3:67569977-67569996 None:intergenic 30.0%
! AGAAAGAAAAAGTGTGGATT+GGG + chr1_3:67569989-67570008 None:intergenic 30.0%
ATTGTTGTGAGTGATGAAAT+TGG + chr1_3:67570084-67570103 None:intergenic 30.0%
AGATTTGATCTTTGAATCAG+GGG - chr1_3:67570184-67570203 Msa0135820:three_prime_UTR 30.0%
! ATTTTCGGTATGAGACTAAA+CGG - chr1_3:67570208-67570227 Msa0135820:three_prime_UTR 30.0%
! ACAATTTTCTGACCCAAAAA+CGG + chr1_3:67570292-67570311 None:intergenic 30.0%
CTTGCAAGAGAAATGAAATT+TGG + chr1_3:67570361-67570380 None:intergenic 30.0%
CAAATTTCATTTCTCTTGCA+AGG - chr1_3:67570359-67570378 Msa0135820:three_prime_UTR 30.0%
!!! GTGATTTTTTTTTAGTGGTG+GGG - chr1_3:67570469-67570488 Msa0135820:three_prime_UTR 30.0%
CTGTTTAGTGTATTATTTGC+TGG - chr1_3:67570522-67570541 Msa0135820:three_prime_UTR 30.0%
TTCTTGTAAACATACCAAAC+TGG - chr1_3:67570768-67570787 Msa0135820:intron 30.0%
!! GGTAATCTTGTTATTGTCTT+TGG - chr1_3:67570801-67570820 Msa0135820:intron 30.0%
! CAAAGGTTGAGCATAAATTT+TGG + chr1_3:67570851-67570870 None:intergenic 30.0%
CAAAATTTATGCTCAACCTT+TGG - chr1_3:67570849-67570868 Msa0135820:three_prime_UTR 30.0%
TTGTTCATAAGAAAGATACC+GGG - chr1_3:67570911-67570930 Msa0135820:intron 30.0%
! TACCGGGATTTAAAATTACA+AGG - chr1_3:67570927-67570946 Msa0135820:intron 30.0%
! TTGACTCTTGATCTTTTGAT+TGG - chr1_3:67571116-67571135 Msa0135820:three_prime_UTR 30.0%
AATTAGGGCATAAATGATTG+CGG + chr1_3:67571175-67571194 None:intergenic 30.0%
AAAACCTTGTCGCTAAATTA+GGG + chr1_3:67571190-67571209 None:intergenic 30.0%
! ATATTGTCAACTATGGATTG+CGG + chr1_3:67571351-67571370 None:intergenic 30.0%
! ATATCAAACAAGAGCACAAA+AGG + chr1_3:67571398-67571417 None:intergenic 30.0%
!! TACATGGTTCAAAGTTTTGA+TGG - chr1_3:67571574-67571593 Msa0135820:intron 30.0%
!! CACATAATTTTTAGGCATTC+AGG + chr1_3:67571617-67571636 None:intergenic 30.0%
TTATGCAAGACAATGTCAAA+TGG + chr1_3:67571706-67571725 None:intergenic 30.0%
ATTTGACATTGTCTTGCATA+AGG - chr1_3:67571705-67571724 Msa0135820:intron 30.0%
!! TTATGGTTTTGCTGAATTTG+TGG - chr1_3:67571822-67571841 Msa0135820:intron 30.0%
ATTTGTTCTTTCCAGTTGTT+AGG - chr1_3:67571922-67571941 Msa0135820:intron 30.0%
TACAAGTACAATGTGAAAGT+AGG + chr1_3:67571997-67572016 None:intergenic 30.0%
! TTGTTTGAATACTTGGTTTG+GGG + chr1_3:67572235-67572254 None:intergenic 30.0%
CTTGTTTGAATACTTGGTTT+GGG + chr1_3:67572236-67572255 None:intergenic 30.0%
ACTTGTTTGAATACTTGGTT+TGG + chr1_3:67572237-67572256 None:intergenic 30.0%
CAGACAATAATTCGTTCTTT+GGG + chr1_3:67572319-67572338 None:intergenic 30.0%
ACAGACAATAATTCGTTCTT+TGG + chr1_3:67572320-67572339 None:intergenic 30.0%
! ACGAATTATTGTCTGTCTTT+TGG - chr1_3:67572324-67572343 Msa0135820:intron 30.0%
TAGCGACTATCACAATAATA+TGG - chr1_3:67572398-67572417 Msa0135820:three_prime_UTR 30.0%
ACTATCACAATAATATGGCA+TGG - chr1_3:67572403-67572422 Msa0135820:three_prime_UTR 30.0%
AATTTCTTAAAGAACAAGGC+TGG - chr1_3:67572432-67572451 Msa0135820:intron 30.0%
AGATATAATGAAAGCTGCAT+CGG - chr1_3:67572530-67572549 Msa0135820:intron 30.0%
ATCTATTCATGGAACTATTC+AGG + chr1_3:67572672-67572691 None:intergenic 30.0%
GCTATGAATATTTGGAAGAA+AGG + chr1_3:67572723-67572742 None:intergenic 30.0%
TACAAACTTCATGGAGAATT+TGG + chr1_3:67572791-67572810 None:intergenic 30.0%
CCATCAAAATACAAACTTCA+TGG + chr1_3:67572800-67572819 None:intergenic 30.0%
!! CCATGAAGTTTGTATTTTGA+TGG - chr1_3:67572797-67572816 Msa0135820:three_prime_UTR 30.0%
ATCCTTCAATGATGAAAAAG+GGG + chr1_3:67572841-67572860 None:intergenic 30.0%
TTTCATCATTGAAGGATTTC+AGG - chr1_3:67572844-67572863 Msa0135820:exon 30.0%
TGTAAATGTTGAATTGCATC+AGG + chr1_3:67572903-67572922 None:intergenic 30.0%
TACAATCCTAAAACTTTCAG+GGG + chr1_3:67573037-67573056 None:intergenic 30.0%
GTACAATCCTAAAACTTTCA+GGG + chr1_3:67573038-67573057 None:intergenic 30.0%
TGTACAATCCTAAAACTTTC+AGG + chr1_3:67573039-67573058 None:intergenic 30.0%
ACTTCATAAGGAATAGTAGA+TGG + chr1_3:67573304-67573323 None:intergenic 30.0%
AATCAAAGATACACACCTAA+CGG + chr1_3:67573349-67573368 None:intergenic 30.0%
TCTCTAGACTAGAATATATC+TGG - chr1_3:67573391-67573410 Msa0135820:intron 30.0%
! AGAACCTTGTTTGTATCATT+CGG - chr1_3:67573712-67573731 Msa0135820:intron 30.0%
ATATCCGAATGATACAAACA+AGG + chr1_3:67573719-67573738 None:intergenic 30.0%
AATCTTCTGATTATCCTGAT+TGG - chr1_3:67573819-67573838 Msa0135820:intron 30.0%
ATCTTCTGATTATCCTGATT+GGG - chr1_3:67573820-67573839 Msa0135820:intron 30.0%
! ATATTTGAAACAACCCAATC+AGG + chr1_3:67573836-67573855 None:intergenic 30.0%
TGCAATGTCCCAAATAAAAA+AGG + chr1_3:67574121-67574140 None:intergenic 30.0%
!!! TTTTTTATTTGGGACATTGC+AGG - chr1_3:67574120-67574139 Msa0135820:intron 30.0%
TATTGTTGGGGAATACATAA+AGG - chr1_3:67574164-67574183 Msa0135820:intron 30.0%
!!! GAATTTTTTTGGAATCTCAC+CGG + chr1_3:67574319-67574338 None:intergenic 30.0%
TGAAATGTTTCATCTTATGG+TGG + chr1_3:67574355-67574374 None:intergenic 30.0%
GTAGATATGATTCGTGAATA+TGG - chr1_3:67574561-67574580 Msa0135820:intron 30.0%
TATAACTTATCTGCATTCCA+TGG - chr1_3:67574633-67574652 Msa0135820:intron 30.0%
AGCATGAACATTCTATTCAT+TGG + chr1_3:67575107-67575126 None:intergenic 30.0%
AATAGAATGTTCATGCTTAG+TGG - chr1_3:67575110-67575129 Msa0135820:five_prime_UTR 30.0%
!! GGTACTTTTTGGTAGAAATT+GGG + chr1_3:67575265-67575284 None:intergenic 30.0%
!! AGGTACTTTTTGGTAGAAAT+TGG + chr1_3:67575266-67575285 None:intergenic 30.0%
AAGCATATAACTAGCTACAA+AGG + chr1_3:67575286-67575305 None:intergenic 30.0%
!!! GTGTGGATTGGGATTTTTTT+TGG + chr1_3:67569978-67569997 None:intergenic 35.0%
! GAGAAAGAAAAAGTGTGGAT+TGG + chr1_3:67569990-67570009 None:intergenic 35.0%
!!! CTTTGAATCAGGGGTATTTT+CGG - chr1_3:67570193-67570212 Msa0135820:three_prime_UTR 35.0%
TTGGGTCAGAAAATTGTTGT+TGG - chr1_3:67570295-67570314 Msa0135820:three_prime_UTR 35.0%
! TGGGTCAGAAAATTGTTGTT+GGG - chr1_3:67570296-67570315 Msa0135820:three_prime_UTR 35.0%
TTGAGCTACAGACATTACAT+CGG + chr1_3:67570705-67570724 None:intergenic 35.0%
!! TACCAAACTGGTTTGTTTCT+TGG - chr1_3:67570780-67570799 Msa0135820:intron 35.0%
TACCAAGAAACAAACCAGTT+TGG + chr1_3:67570785-67570804 None:intergenic 35.0%
!! CAATGTATGAGTTTTGACCT+CGG + chr1_3:67570894-67570913 None:intergenic 35.0%
GAAAACCTTGTCGCTAAATT+AGG + chr1_3:67571191-67571210 None:intergenic 35.0%
TCTATGCAAGAATGCTATAG+AGG + chr1_3:67571305-67571324 None:intergenic 35.0%
TTGAACCATGTATTCAACCA+AGG + chr1_3:67571566-67571585 None:intergenic 35.0%
TCTGATCATGATTCATGATG+AGG + chr1_3:67572197-67572216 None:intergenic 35.0%
!! TGTTTGAATACTTGGTTTGG+GGG + chr1_3:67572234-67572253 None:intergenic 35.0%
ACCAAGTATTCAAACAAGTG+AGG - chr1_3:67572238-67572257 Msa0135820:intron 35.0%
TCCTCACTTGTTTGAATACT+TGG + chr1_3:67572242-67572261 None:intergenic 35.0%
!! CAAGTGAGGATTTACTTTTG+TGG - chr1_3:67572252-67572271 Msa0135820:intron 35.0%
!! ATAATTTGGTTAGGCATTGG+TGG - chr1_3:67572284-67572303 Msa0135820:intron 35.0%
TATTCATGGAACTATTCAGG+AGG + chr1_3:67572669-67572688 None:intergenic 35.0%
TTCGGTGAGCTATGAATATT+TGG + chr1_3:67572731-67572750 None:intergenic 35.0%
!!! TGTATTTTGATGGAGCTGAT+TGG - chr1_3:67572807-67572826 Msa0135820:three_prime_UTR 35.0%
!! TTCCCCTTTTTCATCATTGA+AGG - chr1_3:67572836-67572855 Msa0135820:exon 35.0%
AGGATCAAGAACGAATACAT+CGG + chr1_3:67572880-67572899 None:intergenic 35.0%
AAATGTTGAATTGCATCAGG+AGG + chr1_3:67572900-67572919 None:intergenic 35.0%
CTAAACTTATCTGAGTGCAA+TGG - chr1_3:67572957-67572976 Msa0135820:intron 35.0%
!! CAAGTTGATTATGTATCGCA+TGG - chr1_3:67573185-67573204 Msa0135820:CDS 35.0%
!!! CTACTGTTGTTTTATAGGCA+AGG - chr1_3:67573237-67573256 Msa0135820:CDS 35.0%
!!! TGTTGTTTTATAGGCAAGGT+TGG - chr1_3:67573241-67573260 Msa0135820:CDS 35.0%
TTGTAATAACTAGCTGACGA+GGG + chr1_3:67573270-67573289 None:intergenic 35.0%
TTTGTAATAACTAGCTGACG+AGG + chr1_3:67573271-67573290 None:intergenic 35.0%
TTTGTACAAATGGCATATCG+TGG + chr1_3:67573561-67573580 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+CGG - chr1_3:67573584-67573603 Msa0135820:five_prime_UTR 35.0%
CTACAAGAGTTTGTCAATCA+TGG - chr1_3:67574027-67574046 Msa0135820:intron 35.0%
CACATGAAACTCTTGGAAAA+CGG + chr1_3:67574254-67574273 None:intergenic 35.0%
AATGTTTCATCTTATGGTGG+TGG + chr1_3:67574352-67574371 None:intergenic 35.0%
AAAAGAGCTTCGTCATAGAT+TGG - chr1_3:67574434-67574453 Msa0135820:intron 35.0%
TGCAACCATATTTCTTTCCT+AGG - chr1_3:67574481-67574500 Msa0135820:intron 35.0%
GTATTAGTAAATCATCGCCT+AGG + chr1_3:67574501-67574520 None:intergenic 35.0%
GCAGATAAGTTATACTTACC+AGG + chr1_3:67574627-67574646 None:intergenic 35.0%
TTGATTTCTGTCATAGACCA+TGG + chr1_3:67574653-67574672 None:intergenic 35.0%
! ATTTTTCCATACCCTGCATT+CGG + chr1_3:67574713-67574732 None:intergenic 35.0%
TCTTACACTTGTTCTGCTTT+AGG + chr1_3:67574775-67574794 None:intergenic 35.0%
!!! CTAGCTACAAAGGTACTTTT+TGG + chr1_3:67575276-67575295 None:intergenic 35.0%
GCAGAGAGAAAGAAAAAGTG+TGG + chr1_3:67569995-67570014 None:intergenic 40.0%
CGAAGAAGAAGAAGAAGTGA+TGG - chr1_3:67570243-67570262 Msa0135820:three_prime_UTR 40.0%
CTCAATATGGACAACTCCAA+AGG + chr1_3:67570868-67570887 None:intergenic 40.0%
TTGTCCATATTGAGAATCCG+AGG - chr1_3:67570874-67570893 Msa0135820:three_prime_UTR 40.0%
TTGACCTCGGATTCTCAATA+TGG + chr1_3:67570881-67570900 None:intergenic 40.0%
TATGCCCTAATTTAGCGACA+AGG - chr1_3:67571183-67571202 Msa0135820:intron 40.0%
! ACTATGGATTGCGGAAATAG+AGG + chr1_3:67571342-67571361 None:intergenic 40.0%
! ATGTTTGGAGTTACCACTGT+CGG - chr1_3:67571519-67571538 Msa0135820:intron 40.0%
CATGTATTCAACCAAGGAAG+TGG + chr1_3:67571560-67571579 None:intergenic 40.0%
CACTTCCTTGGTTGAATACA+TGG - chr1_3:67571558-67571577 Msa0135820:intron 40.0%
TTATGTGTAATGCAGGAGCA+AGG - chr1_3:67571630-67571649 Msa0135820:intron 40.0%
TATGTGTAATGCAGGAGCAA+GGG - chr1_3:67571631-67571650 Msa0135820:intron 40.0%
TTTGGGAGTTGAGTATGACA+TGG - chr1_3:67572098-67572117 Msa0135820:intron 40.0%
TGTGTAGTATCCAGAAGATG+TGG + chr1_3:67572142-67572161 None:intergenic 40.0%
TATAATGAAAGCTGCATCGG+AGG - chr1_3:67572533-67572552 Msa0135820:intron 40.0%
ATAATGAAAGCTGCATCGGA+GGG - chr1_3:67572534-67572553 Msa0135820:intron 40.0%
CATTAAGTACACGAGGAATC+TGG - chr1_3:67572589-67572608 Msa0135820:intron 40.0%
GGATCAAGAACGAATACATC+GGG + chr1_3:67572879-67572898 None:intergenic 40.0%
CTAAAACTTTCAGGGGAGAT+TGG + chr1_3:67573030-67573049 None:intergenic 40.0%
! CAATCTCCCCTGAAAGTTTT+AGG - chr1_3:67573028-67573047 Msa0135820:intron 40.0%
CGTACATCTTGCTCTTGTAT+TGG - chr1_3:67573097-67573116 Msa0135820:CDS 40.0%
CTTATGAAGTCACCAAAGCT+GGG - chr1_3:67573314-67573333 Msa0135820:five_prime_UTR 40.0%
!! TAGCAGCTATAGCGGATTAA+CGG - chr1_3:67573592-67573611 Msa0135820:five_prime_UTR 40.0%
AGTTGCAAAACCTCTAGTTG+TGG - chr1_3:67573927-67573946 Msa0135820:intron 40.0%
ACAAACTCTTGTAGAACCAG+TGG + chr1_3:67574021-67574040 None:intergenic 40.0%
! TTTATTTGGGACATTGCAGG+TGG - chr1_3:67574123-67574142 Msa0135820:intron 40.0%
GGGAATACATAAAGGTTGTG+AGG - chr1_3:67574172-67574191 Msa0135820:intron 40.0%
AGCTCGCGTTTACTGATATT+AGG + chr1_3:67574210-67574229 None:intergenic 40.0%
GATCTTGATCCTAGTATTGC+CGG - chr1_3:67574297-67574316 Msa0135820:intron 40.0%
!!! GTGGGAAAGGGGAATTTTTT+TGG + chr1_3:67574330-67574349 None:intergenic 40.0%
!! TTTCATCTTATGGTGGTGGT+GGG + chr1_3:67574348-67574367 None:intergenic 40.0%
CATCGCCTAGGAAAGAAATA+TGG + chr1_3:67574489-67574508 None:intergenic 40.0%
TGAATTGCAATGCCGTCTAT+AGG - chr1_3:67574521-67574540 Msa0135820:intron 40.0%
GAATTGCAATGCCGTCTATA+GGG - chr1_3:67574522-67574541 Msa0135820:intron 40.0%
! TTTACGGTTTTTCCGAATGC+AGG - chr1_3:67574698-67574717 Msa0135820:intron 40.0%
! TTACGGTTTTTCCGAATGCA+GGG - chr1_3:67574699-67574718 Msa0135820:intron 40.0%
CTTCCAACTTCTCTTGCTTT+AGG + chr1_3:67574810-67574829 None:intergenic 40.0%
TAAACTGGCACGAAATGTCA+AGG - chr1_3:67575178-67575197 Msa0135820:five_prime_UTR 40.0%
! AGAAGTGATGGCGAAATCTG+AGG - chr1_3:67570255-67570274 Msa0135820:three_prime_UTR 45.0%
!! GTGAGTACGACACCGTTTTT+GGG - chr1_3:67570277-67570296 Msa0135820:three_prime_UTR 45.0%
!! CTAAAAGTGTCGGTCACGAA+TGG + chr1_3:67570746-67570765 None:intergenic 45.0%
CGCTACAGCACAGATGATTT+GGG + chr1_3:67571221-67571240 None:intergenic 45.0%
ACGCTACAGCACAGATGATT+TGG + chr1_3:67571222-67571241 None:intergenic 45.0%
GCTGTAGCGTAATAGTGTTG+TGG - chr1_3:67571232-67571251 Msa0135820:intron 45.0%
GTGGTTGATCTCAGTAGAAG+TGG - chr1_3:67571464-67571483 Msa0135820:intron 45.0%
! TGTTTGGAGTTACCACTGTC+GGG - chr1_3:67571520-67571539 Msa0135820:intron 45.0%
! GTTTTACCTGACCACTTCCT+TGG - chr1_3:67571546-67571565 Msa0135820:intron 45.0%
ATTCAACCAAGGAAGTGGTC+AGG + chr1_3:67571555-67571574 None:intergenic 45.0%
ATGTGTAATGCAGGAGCAAG+GGG - chr1_3:67571632-67571651 Msa0135820:intron 45.0%
AACAAGCCACTGTCAGAACA+AGG - chr1_3:67571679-67571698 Msa0135820:intron 45.0%
AATGGACCTTGTTCTGACAG+TGG + chr1_3:67571688-67571707 None:intergenic 45.0%
TTCTTTCCAGTTGTTAGGCG+AGG - chr1_3:67571927-67571946 Msa0135820:intron 45.0%
GGAATGGCGAGAGATTATTG+AGG - chr1_3:67571948-67571967 Msa0135820:intron 45.0%
TGAAAGTAGGCTGAAGTGAG+TGG + chr1_3:67571984-67572003 None:intergenic 45.0%
GAGTATGACATGGAGGTGAT+TGG - chr1_3:67572108-67572127 Msa0135820:intron 45.0%
ATCCAGAAGATGTGGTTGTC+CGG + chr1_3:67572134-67572153 None:intergenic 45.0%
ATACCAAATGCAACCGTGTC+TGG - chr1_3:67572494-67572513 Msa0135820:intron 45.0%
TAACCAGACACGGTTGCATT+TGG + chr1_3:67572500-67572519 None:intergenic 45.0%
GATGACTAACTTCTGACAGC+TGG - chr1_3:67572556-67572575 Msa0135820:intron 45.0%
!! CATCTTGAAGCATGGATTGG+CGG + chr1_3:67572929-67572948 None:intergenic 45.0%
CCACATCTTGAAGCATGGAT+TGG + chr1_3:67572932-67572951 None:intergenic 45.0%
CCAATCCATGCTTCAAGATG+TGG - chr1_3:67572929-67572948 Msa0135820:intron 45.0%
ATCCATGCTTCAAGATGTGG+TGG - chr1_3:67572932-67572951 Msa0135820:intron 45.0%
ATCCACCACATCTTGAAGCA+TGG + chr1_3:67572937-67572956 None:intergenic 45.0%
! CCAGCTTTGGTGACTTCATA+AGG + chr1_3:67573316-67573335 None:intergenic 45.0%
CCTTATGAAGTCACCAAAGC+TGG - chr1_3:67573313-67573332 Msa0135820:five_prime_UTR 45.0%
TAGCTATTGGCACCTTTCTG+CGG - chr1_3:67573445-67573464 Msa0135820:intron 45.0%
AACCAATCAATGCCGCAGAA+AGG + chr1_3:67573460-67573479 None:intergenic 45.0%
GTGTTGTCAATAGCAGGTCA+CGG + chr1_3:67573664-67573683 None:intergenic 45.0%
GAGTCAGTGTTGTCAATAGC+AGG + chr1_3:67573670-67573689 None:intergenic 45.0%
GCAAAACCTCTAGTTGTGGA+TGG - chr1_3:67573931-67573950 Msa0135820:intron 45.0%
AACTCTTGTAGAACCAGTGG+AGG + chr1_3:67574018-67574037 None:intergenic 45.0%
!! GTTTCATCTTATGGTGGTGG+TGG + chr1_3:67574349-67574368 None:intergenic 45.0%
TCTCCAACAAAGGTCTTGGT+GGG + chr1_3:67574407-67574426 None:intergenic 45.0%
TTTGCAAGCCTCTCCAACAA+AGG + chr1_3:67574417-67574436 None:intergenic 45.0%
ACAAGCGAAGTCCCTATAGA+CGG + chr1_3:67574536-67574555 None:intergenic 45.0%
GATTCGTGAATATGGGACGA+AGG - chr1_3:67574569-67574588 Msa0135820:intron 45.0%
! GTTTTTCCGAATGCAGGGTA+TGG - chr1_3:67574704-67574723 Msa0135820:intron 45.0%
GTAAAGACATGCTCGTAGTC+TGG + chr1_3:67574737-67574756 None:intergenic 45.0%
CTGCCTAAAGCAAGAGAAGT+TGG - chr1_3:67574804-67574823 Msa0135820:intron 45.0%
TGGTAGAAATTGGGACAGAG+TGG + chr1_3:67575256-67575275 None:intergenic 45.0%
! GGTGAGTACGACACCGTTTT+TGG - chr1_3:67570276-67570295 Msa0135820:three_prime_UTR 50.0%
! GTTTGGAGTTACCACTGTCG+GGG - chr1_3:67571521-67571540 Msa0135820:intron 50.0%
! TTTGGAGTTACCACTGTCGG+GGG - chr1_3:67571522-67571541 Msa0135820:intron 50.0%
TCCAGTTGTTAGGCGAGGAA+TGG - chr1_3:67571932-67571951 Msa0135820:intron 50.0%
GGGAGTTGAGTATGACATGG+AGG - chr1_3:67572101-67572120 Msa0135820:intron 50.0%
ATGACATGGAGGTGATTGGC+CGG - chr1_3:67572112-67572131 Msa0135820:intron 50.0%
! ACAAGGCTGGCTGAGCTTAT+AGG - chr1_3:67572445-67572464 Msa0135820:intron 50.0%
GCTGGCTGAGCTTATAGGTT+AGG - chr1_3:67572450-67572469 Msa0135820:intron 50.0%
!! CACCTTTCTGCGGCATTGAT+TGG - chr1_3:67573455-67573474 Msa0135820:intron 50.0%
!! TAGCGGATTAACGGCGCTAT+AGG - chr1_3:67573601-67573620 Msa0135820:five_prime_UTR 50.0%
!! AGCGGATTAACGGCGCTATA+GGG - chr1_3:67573602-67573621 Msa0135820:five_prime_UTR 50.0%
TTCAGAGCTTGAACCTCCAC+TGG - chr1_3:67574002-67574021 Msa0135820:intron 50.0%
GCTGCTGCACATGAAACTCT+TGG + chr1_3:67574261-67574280 None:intergenic 50.0%
GGAATCTCACCGGCAATACT+AGG + chr1_3:67574309-67574328 None:intergenic 50.0%
!! TTATGGTGGTGGTGGGAAAG+GGG + chr1_3:67574341-67574360 None:intergenic 50.0%
!! CTTATGGTGGTGGTGGGAAA+GGG + chr1_3:67574342-67574361 None:intergenic 50.0%
!! TCTTATGGTGGTGGTGGGAA+AGG + chr1_3:67574343-67574362 None:intergenic 50.0%
ACACCCACCAAGACCTTTGT+TGG - chr1_3:67574401-67574420 Msa0135820:intron 50.0%
CTCTCCAACAAAGGTCTTGG+TGG + chr1_3:67574408-67574427 None:intergenic 50.0%
CACCAAGACCTTTGTTGGAG+AGG - chr1_3:67574406-67574425 Msa0135820:intron 50.0%
AGCCTCTCCAACAAAGGTCT+TGG + chr1_3:67574411-67574430 None:intergenic 50.0%
TGTCGGTCACGAATGGAGCT+CGG + chr1_3:67570739-67570758 None:intergenic 55.0%
AGGTAAAACTCCCCCGACAG+TGG + chr1_3:67571535-67571554 None:intergenic 55.0%
GCCATTCCTCGCCTAACAAC+TGG + chr1_3:67571936-67571955 None:intergenic 55.0%
CGGCAACTTCAACCCAGCTT+TGG + chr1_3:67573329-67573348 None:intergenic 55.0%
! GCTGGGTTGAAGTTGCCGTT+AGG - chr1_3:67573331-67573350 Msa0135820:five_prime_UTR 55.0%
ATAGCAGCGCTACAGCACAG+TGG - chr1_3:67573512-67573531 Msa0135820:intron 55.0%
GCACTGCCATCCACAACTAG+AGG + chr1_3:67573940-67573959 None:intergenic 55.0%
CGCGAGCTATCAAAAGTCGC+AGG - chr1_3:67574222-67574241 Msa0135820:intron 55.0%
TCGGTCACGAATGGAGCTCG+GGG + chr1_3:67570737-67570756 None:intergenic 60.0%
GTCGGTCACGAATGGAGCTC+GGG + chr1_3:67570738-67570757 None:intergenic 60.0%
GGCCGGACAACCACATCTTC+TGG - chr1_3:67572129-67572148 Msa0135820:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67569955 67575349 67569955 ID=Msa0135820;Name=Msa0135820
chr1_3 mRNA 67569955 67575349 67569955 ID=Msa0135820-mRNA-1;Parent=Msa0135820;Name=Msa0135820-mRNA-1;_AED=0.13;_eAED=0.13;_QI=604|0.81|0.91|1|0.72|0.75|12|1440|95
chr1_3 exon 67569955 67570584 67569955 ID=Msa0135820-mRNA-1:exon:23173;Parent=Msa0135820-mRNA-1
chr1_3 exon 67570677 67570761 67570677 ID=Msa0135820-mRNA-1:exon:23172;Parent=Msa0135820-mRNA-1
chr1_3 exon 67570849 67570904 67570849 ID=Msa0135820-mRNA-1:exon:23171;Parent=Msa0135820-mRNA-1
chr1_3 exon 67570986 67571162 67570986 ID=Msa0135820-mRNA-1:exon:23170;Parent=Msa0135820-mRNA-1
chr1_3 exon 67571256 67571375 67571256 ID=Msa0135820-mRNA-1:exon:23169;Parent=Msa0135820-mRNA-1
chr1_3 exon 67571952 67572050 67571952 ID=Msa0135820-mRNA-1:exon:23168;Parent=Msa0135820-mRNA-1
chr1_3 exon 67572326 67572446 67572326 ID=Msa0135820-mRNA-1:exon:23167;Parent=Msa0135820-mRNA-1
chr1_3 exon 67572694 67572903 67572694 ID=Msa0135820-mRNA-1:exon:23166;Parent=Msa0135820-mRNA-1
chr1_3 exon 67572933 67572940 67572933 ID=Msa0135820-mRNA-1:exon:23165;Parent=Msa0135820-mRNA-1
chr1_3 exon 67573050 67573367 67573050 ID=Msa0135820-mRNA-1:exon:23164;Parent=Msa0135820-mRNA-1
chr1_3 exon 67573578 67573659 67573578 ID=Msa0135820-mRNA-1:exon:23163;Parent=Msa0135820-mRNA-1
chr1_3 exon 67574924 67575349 67574924 ID=Msa0135820-mRNA-1:exon:23162;Parent=Msa0135820-mRNA-1
chr1_3 five_prime_UTR 67574924 67575349 67574924 ID=Msa0135820-mRNA-1:five_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 five_prime_UTR 67573578 67573659 67573578 ID=Msa0135820-mRNA-1:five_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 five_prime_UTR 67573272 67573367 67573272 ID=Msa0135820-mRNA-1:five_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 CDS 67573050 67573271 67573050 ID=Msa0135820-mRNA-1:cds;Parent=Msa0135820-mRNA-1
chr1_3 CDS 67572933 67572940 67572933 ID=Msa0135820-mRNA-1:cds;Parent=Msa0135820-mRNA-1
chr1_3 CDS 67572846 67572903 67572846 ID=Msa0135820-mRNA-1:cds;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67572694 67572845 67572694 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67572326 67572446 67572326 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67571952 67572050 67571952 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67571256 67571375 67571256 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67570986 67571162 67570986 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67570849 67570904 67570849 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67570677 67570761 67570677 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
chr1_3 three_prime_UTR 67569955 67570584 67569955 ID=Msa0135820-mRNA-1:three_prime_utr;Parent=Msa0135820-mRNA-1
Gene Sequence

>Msa0135820

ATGTATGTCTCTTTTTCTTCTTTTATAACATTCATGGTATTGTATGAAATCGTTAGTATTATTAGTTTGGGAGTTGAGTATGACATGGAGGTGATTGGCCGGACAACCACATCTTCTGGATACTACACAACTTCTGACATAATTTGCAGAGTTCTTGCTCTCCTCATCATGAATCATGATCAGATAGTTGAAATCAGTCCCCCAAACCAAGTATTCAAACAATTGAAAATCGACTATCACAATAATATGGCATGGAGATCAAATTTCTTAAAGAACAAGGCTGGCTGA
Protein sequence

>Msa0135820

MYVSFSSFITFMVLYEIVSIISLGVEYDMEVIGRTTTSSGYYTTSDIICRVLALLIMNHDQIVEISPPNQVFKQLKIDYHNNMAWRSNFLKNKAG*