Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201470 | XP_013441887.1 | 87.179 | 312 | 37 | 2 | 1 | 311 | 1 | 310 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201470 | sp|Q7M443|CHIT2_TULSB | 33.007 | 306 | 164 | 11 | 15 | 310 | 1 | 275 | 1.76e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201470 | A0A072TEX8 | 87.179 | 312 | 37 | 2 | 1 | 311 | 1 | 310 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201430 | Msa0201470 | 0.891378 | 4.194364e-74 | -8.615850e-47 |
| Msa0201440 | Msa0201470 | 0.895078 | 1.348747e-75 | -8.615850e-47 |
| Msa0201450 | Msa0201470 | 0.889838 | 1.691787e-73 | -8.615850e-47 |
| Msa0201460 | Msa0201470 | 0.910631 | 1.509190e-82 | -8.615850e-47 |
| Msa0201470 | Msa0244020 | 0.873784 | 1.123834e-67 | -8.615850e-47 |
| Msa0201470 | Msa0244030 | 0.865362 | 6.241588e-65 | -8.615850e-47 |
| Msa0201470 | Msa0244040 | 0.863872 | 1.825805e-64 | -8.615850e-47 |
| Msa0201470 | Msa0244050 | 0.826255 | 2.998325e-54 | -8.615850e-47 |
| Msa0201470 | Msa0244060 | 0.888747 | 4.487167e-73 | -8.615850e-47 |
| Msa0201470 | Msa0244070 | 0.884720 | 1.507217e-71 | -8.615850e-47 |
| Msa0201470 | Msa0244080 | 0.870800 | 1.109893e-66 | -8.615850e-47 |
| Msa0201470 | Msa0282910 | 0.892608 | 1.357474e-74 | -8.615850e-47 |
| Msa0201470 | Msa0282920 | 0.892526 | 1.463661e-74 | -8.615850e-47 |
| Msa0201470 | Msa0282930 | 0.883820 | 3.244920e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201470 | MtrunA17_Chr2g0303381 | 87.179 | 312 | 37 | 2 | 1 | 311 | 1 | 310 | 0.0 | 565 |
| Msa0201470 | MtrunA17_Chr2g0303401 | 87.179 | 312 | 37 | 2 | 1 | 311 | 1 | 310 | 0.0 | 565 |
| Msa0201470 | MtrunA17_Chr2g0297811 | 58.013 | 312 | 122 | 6 | 4 | 311 | 3 | 309 | 4.30e-111 | 324 |
| Msa0201470 | MtrunA17_Chr2g0297801 | 58.013 | 312 | 122 | 6 | 4 | 311 | 3 | 309 | 4.30e-111 | 324 |
| Msa0201470 | MtrunA17_Chr2g0297791 | 58.013 | 312 | 122 | 6 | 4 | 311 | 3 | 309 | 4.30e-111 | 324 |
| Msa0201470 | MtrunA17_Chr8g0350511 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 1.20e-90 | 272 |
| Msa0201470 | MtrunA17_Chr8g0350521 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 1.20e-90 | 272 |
| Msa0201470 | MtrunA17_Chr8g0350541 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 1.20e-90 | 272 |
| Msa0201470 | MtrunA17_Chr8g0350501 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 1.20e-90 | 272 |
| Msa0201470 | MtrunA17_Chr2g0297731 | 47.557 | 307 | 138 | 7 | 14 | 308 | 2 | 297 | 2.14e-90 | 271 |
| Msa0201470 | MtrunA17_Chr8g0350531 | 48.675 | 302 | 138 | 4 | 12 | 310 | 276 | 563 | 3.14e-87 | 271 |
| Msa0201470 | MtrunA17_Chr8g0350531 | 46.823 | 299 | 128 | 5 | 12 | 304 | 12 | 285 | 3.93e-77 | 245 |
| Msa0201470 | MtrunA17_Chr8g0350551 | 45.695 | 302 | 133 | 4 | 12 | 310 | 12 | 285 | 6.73e-81 | 246 |
| Msa0201470 | MtrunA17_Chr2g0297761 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 1.81e-77 | 238 |
| Msa0201470 | MtrunA17_Chr2g0297771 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 1.81e-77 | 238 |
| Msa0201470 | MtrunA17_Chr2g0297781 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 1.81e-77 | 238 |
| Msa0201470 | MtrunA17_Chr8g0350441 | 42.953 | 298 | 149 | 7 | 14 | 309 | 13 | 291 | 1.01e-73 | 228 |
| Msa0201470 | MtrunA17_Chr8g0350431 | 43.197 | 294 | 146 | 7 | 14 | 305 | 13 | 287 | 8.46e-71 | 221 |
| Msa0201470 | MtrunA17_Chr8g0350421 | 43.197 | 294 | 146 | 7 | 14 | 305 | 13 | 287 | 8.46e-71 | 221 |
| Msa0201470 | MtrunA17_Chr8g0350411 | 43.197 | 294 | 146 | 7 | 14 | 305 | 13 | 287 | 8.46e-71 | 221 |
| Msa0201470 | MtrunA17_Chr8g0350451 | 42.295 | 305 | 139 | 9 | 9 | 311 | 9 | 278 | 3.83e-62 | 198 |
| Msa0201470 | MtrunA17_Chr8g0350461 | 42.295 | 305 | 139 | 9 | 9 | 311 | 9 | 278 | 3.83e-62 | 198 |
| Msa0201470 | MtrunA17_Chr8g0350471 | 42.295 | 305 | 139 | 9 | 9 | 311 | 9 | 278 | 3.83e-62 | 198 |
| Msa0201470 | MtrunA17_Chr6g0481561 | 30.961 | 281 | 159 | 9 | 16 | 287 | 34 | 288 | 7.71e-31 | 117 |
| Msa0201470 | MtrunA17_Chr2g0327601 | 31.915 | 282 | 155 | 10 | 16 | 287 | 31 | 285 | 1.47e-28 | 111 |
| Msa0201470 | MtrunA17_Chr2g0327611 | 31.273 | 275 | 154 | 11 | 15 | 279 | 28 | 277 | 1.84e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2_1:+23000521 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2_1:-23000473 | Msa0201470:CDS |
| CCCACTATCACAAATTGTTT+TGG | 0.235019 | 2_1:-23000007 | Msa0201470:CDS |
| TGTAGCTAGTAATCAATTAT+TGG | 0.249179 | 2_1:+22999674 | None:intergenic |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2_1:-23000291 | Msa0201470:CDS |
| GGACACATATTCCATGGATT+TGG | 0.302531 | 2_1:+23000055 | None:intergenic |
| CCCAAAACAATTTGTGATAG+TGG | 0.307816 | 2_1:+23000006 | None:intergenic |
| GTACGGTGAGCTTAAACTTT+TGG | 0.312581 | 2_1:-22999883 | Msa0201470:CDS |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2_1:+23000253 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2_1:-23000212 | Msa0201470:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2_1:-23000415 | Msa0201470:CDS |
| TCATCATTGATGATATTAAC+AGG | 0.403312 | 2_1:+23000500 | None:intergenic |
| ACAATTTGTGATAGTGGGCT+TGG | 0.407911 | 2_1:+23000012 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2_1:-23000182 | Msa0201470:CDS |
| ATCATCAAACTCATCCTTTG+AGG | 0.453286 | 2_1:+22999929 | None:intergenic |
| CGGTTCATCTTAGTATCAGC+TGG | 0.454457 | 2_1:+22999843 | None:intergenic |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2_1:+23000522 | None:intergenic |
| AGCATTTCCTCCAAGATGTA+AGG | 0.467593 | 2_1:+22999711 | None:intergenic |
| GATGTCATTGCTCGGTGGGT+TGG | 0.481116 | 2_1:+22999737 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2_1:-23000140 | Msa0201470:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2_1:-23000446 | Msa0201470:CDS |
| AACCGAGAGGTGTTCATTGA+GGG | 0.499384 | 2_1:-22999825 | Msa0201470:CDS |
| CGCCCTCAATGAACACCTCT+CGG | 0.504404 | 2_1:+22999823 | None:intergenic |
| TGACATCGAGCCTTACATCT+TGG | 0.507062 | 2_1:-22999721 | Msa0201470:CDS |
| CCAAAACAATTTGTGATAGT+GGG | 0.510345 | 2_1:+23000007 | None:intergenic |
| TCTCTACAATCAACTAATAA+CGG | 0.514921 | 2_1:-22999907 | Msa0201470:CDS |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2_1:-23000434 | Msa0201470:CDS |
| CTAGTAATCAATTATTGGTA+AGG | 0.518596 | 2_1:+22999679 | None:intergenic |
| ATCAACAGCAAATCACTCCT+TGG | 0.519679 | 2_1:-22999789 | Msa0201470:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2_1:-23000300 | Msa0201470:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2_1:-23000116 | Msa0201470:CDS |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2_1:+23000106 | None:intergenic |
| ATTTGTGATAGTGGGCTTGG+AGG | 0.527426 | 2_1:+23000015 | None:intergenic |
| GCTCGATGTCATTGCTCGGT+GGG | 0.532171 | 2_1:+22999733 | None:intergenic |
| GAGGAGCTCTGTCGGAGCAA+TGG | 0.538177 | 2_1:+23000034 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2_1:-23000335 | Msa0201470:CDS |
| CATCGAGCCTTACATCTTGG+AGG | 0.554478 | 2_1:-22999718 | Msa0201470:CDS |
| TCGAGAATACATTGGCGTGA+AGG | 0.556428 | 2_1:-23000549 | Msa0201470:CDS |
| GAAAGAACATAAGAATATGA+AGG | 0.556511 | 2_1:-23000351 | Msa0201470:CDS |
| TAAGCATGTATCCAAATCCA+TGG | 0.557313 | 2_1:-23000066 | Msa0201470:CDS |
| CATCTTAGTATCAGCTGGAT+CGG | 0.557541 | 2_1:+22999848 | None:intergenic |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2_1:+23000309 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2_1:-23000440 | Msa0201470:CDS |
| GAACCGAGAGGTGTTCATTG+AGG | 0.566347 | 2_1:-22999826 | Msa0201470:CDS |
| CAATCAAACTATATCCTCAA+AGG | 0.567378 | 2_1:-22999943 | Msa0201470:CDS |
| AGCAATGGACACATATTCCA+TGG | 0.567858 | 2_1:+23000049 | None:intergenic |
| GGCTCGATGTCATTGCTCGG+TGG | 0.574776 | 2_1:+22999732 | None:intergenic |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2_1:-23000139 | Msa0201470:CDS |
| AATCAACTAATAACGGAGTA+CGG | 0.579060 | 2_1:-22999900 | Msa0201470:CDS |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2_1:-23000326 | Msa0201470:CDS |
| TGGGCTTGGAGGAGCTCTGT+CGG | 0.590259 | 2_1:+23000026 | None:intergenic |
| TAAGGCTCGATGTCATTGCT+CGG | 0.600452 | 2_1:+22999729 | None:intergenic |
| AGTTATTAAACATCTCAAGA+AGG | 0.601516 | 2_1:-23000090 | Msa0201470:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2_1:-23000435 | Msa0201470:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2_1:+23000465 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2_1:+23000210 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2_1:+23000445 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2_1:+23000183 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2_1:-23000459 | Msa0201470:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2_1:-23000332 | Msa0201470:CDS |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2_1:-23000138 | Msa0201470:CDS |
| TGATACTAAGATGAACCGAG+AGG | 0.777827 | 2_1:-22999838 | Msa0201470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22999728-22999747 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22999728-22999747 | Msa0201470:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22999766-22999785 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22999788-22999807 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22999934-22999953 | Msa0201470:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22999950-22999969 | Msa0201470:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22999985-23000004 | Msa0201470:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:23000195-23000214 | Msa0201470:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_1:23000378-23000397 | Msa0201470:CDS | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22999728-22999747 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22999728-22999747 | Msa0201470:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22999766-22999785 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22999788-22999807 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22999934-22999953 | Msa0201470:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22999950-22999969 | Msa0201470:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22999985-23000004 | Msa0201470:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:23000195-23000214 | Msa0201470:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_1:23000378-23000397 | Msa0201470:CDS | 25.0% |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22999717-22999736 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22999767-22999786 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22999812-22999831 | Msa0201470:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22999850-22999869 | Msa0201470:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22999851-22999870 | Msa0201470:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22999913-22999932 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22999914-22999933 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22999995-23000014 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22999994-23000013 | Msa0201470:CDS | 30.0% | |
| CCAAAACAATTTGTGATAGT+GGG | + | chr2_1:23000281-23000300 | None:intergenic | 30.0% | |
| ! | CCACTATCACAAATTGTTTT+GGG | - | chr2_1:23000279-23000298 | Msa0201470:CDS | 30.0% |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:23000306-23000325 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_1:23000342-23000361 | Msa0201470:CDS | 30.0% | |
| ! | AATCAACTAATAACGGAGTA+CGG | - | chr2_1:23000385-23000404 | Msa0201470:CDS | 30.0% |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22999717-22999736 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22999767-22999786 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22999812-22999831 | Msa0201470:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22999850-22999869 | Msa0201470:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22999851-22999870 | Msa0201470:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22999913-22999932 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22999914-22999933 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22999995-23000014 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22999994-23000013 | Msa0201470:CDS | 30.0% | |
| CCAAAACAATTTGTGATAGT+GGG | + | chr2_1:23000281-23000300 | None:intergenic | 30.0% | |
| ! | CCACTATCACAAATTGTTTT+GGG | - | chr2_1:23000279-23000298 | Msa0201470:CDS | 30.0% |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:23000306-23000325 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_1:23000342-23000361 | Msa0201470:CDS | 30.0% | |
| ! | AATCAACTAATAACGGAGTA+CGG | - | chr2_1:23000385-23000404 | Msa0201470:CDS | 30.0% |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22999702-22999721 | Msa0201470:CDS | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22999845-22999864 | Msa0201470:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22999953-22999972 | Msa0201470:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22999979-22999998 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22999999-23000018 | Msa0201470:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:23000004-23000023 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:23000073-23000092 | Msa0201470:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:23000078-23000097 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:23000145-23000164 | Msa0201470:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:23000146-23000165 | Msa0201470:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:23000182-23000201 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:23000219-23000238 | Msa0201470:CDS | 35.0% | |
| ! | CCCACTATCACAAATTGTTT+TGG | - | chr2_1:23000278-23000297 | Msa0201470:CDS | 35.0% |
| CCCAAAACAATTTGTGATAG+TGG | + | chr2_1:23000282-23000301 | None:intergenic | 35.0% | |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:23000291-23000310 | Msa0201470:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_1:23000359-23000378 | None:intergenic | 35.0% | |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22999702-22999721 | Msa0201470:CDS | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22999845-22999864 | Msa0201470:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22999953-22999972 | Msa0201470:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22999979-22999998 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22999999-23000018 | Msa0201470:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:23000004-23000023 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:23000073-23000092 | Msa0201470:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:23000078-23000097 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:23000145-23000164 | Msa0201470:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:23000146-23000165 | Msa0201470:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:23000182-23000201 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:23000219-23000238 | Msa0201470:CDS | 35.0% | |
| ! | CCCACTATCACAAATTGTTT+TGG | - | chr2_1:23000278-23000297 | Msa0201470:CDS | 35.0% |
| CCCAAAACAATTTGTGATAG+TGG | + | chr2_1:23000282-23000301 | None:intergenic | 35.0% | |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:23000291-23000310 | Msa0201470:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_1:23000359-23000378 | None:intergenic | 35.0% | |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22999843-22999862 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:23000035-23000054 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:23000105-23000124 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:23000103-23000122 | Msa0201470:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:23000147-23000166 | Msa0201470:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:23000233-23000252 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:23000239-23000258 | None:intergenic | 40.0% | |
| !! | ACAATTTGTGATAGTGGGCT+TGG | + | chr2_1:23000276-23000295 | None:intergenic | 40.0% |
| ! | GTACGGTGAGCTTAAACTTT+TGG | - | chr2_1:23000402-23000421 | Msa0201470:CDS | 40.0% |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_1:23000440-23000459 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_1:23000447-23000466 | Msa0201470:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_1:23000496-23000515 | Msa0201470:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_1:23000509-23000528 | Msa0201470:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_1:23000516-23000535 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_1:23000577-23000596 | None:intergenic | 40.0% | |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22999843-22999862 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:23000035-23000054 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:23000105-23000124 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:23000103-23000122 | Msa0201470:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:23000147-23000166 | Msa0201470:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:23000233-23000252 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:23000239-23000258 | None:intergenic | 40.0% | |
| !! | ACAATTTGTGATAGTGGGCT+TGG | + | chr2_1:23000276-23000295 | None:intergenic | 40.0% |
| ! | GTACGGTGAGCTTAAACTTT+TGG | - | chr2_1:23000402-23000421 | Msa0201470:CDS | 40.0% |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_1:23000440-23000459 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_1:23000447-23000466 | Msa0201470:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_1:23000496-23000515 | Msa0201470:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_1:23000509-23000528 | Msa0201470:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_1:23000516-23000535 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_1:23000577-23000596 | None:intergenic | 40.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22999736-22999755 | Msa0201470:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22999839-22999858 | Msa0201470:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22999959-22999978 | Msa0201470:CDS | 45.0% | |
| !! | ATTTGTGATAGTGGGCTTGG+AGG | + | chr2_1:23000273-23000292 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_1:23000406-23000425 | Msa0201470:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_1:23000445-23000464 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_1:23000460-23000479 | Msa0201470:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_1:23000559-23000578 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_1:23000564-23000583 | Msa0201470:CDS | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22999736-22999755 | Msa0201470:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22999839-22999858 | Msa0201470:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22999959-22999978 | Msa0201470:CDS | 45.0% | |
| !! | ATTTGTGATAGTGGGCTTGG+AGG | + | chr2_1:23000273-23000292 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_1:23000406-23000425 | Msa0201470:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_1:23000445-23000464 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_1:23000460-23000479 | Msa0201470:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_1:23000559-23000578 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_1:23000564-23000583 | Msa0201470:CDS | 45.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22999823-22999842 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:23000169-23000188 | Msa0201470:CDS | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_1:23000459-23000478 | Msa0201470:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_1:23000567-23000586 | Msa0201470:CDS | 50.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22999823-22999842 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:23000169-23000188 | Msa0201470:CDS | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_1:23000459-23000478 | Msa0201470:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_1:23000567-23000586 | Msa0201470:CDS | 50.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22999826-22999845 | Msa0201470:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22999870-22999889 | Msa0201470:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_1:23000465-23000484 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_1:23000551-23000570 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_1:23000555-23000574 | None:intergenic | 55.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22999826-22999845 | Msa0201470:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22999870-22999889 | Msa0201470:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_1:23000465-23000484 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_1:23000551-23000570 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_1:23000555-23000574 | None:intergenic | 55.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:23000254-23000273 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:23000262-23000281 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_1:23000556-23000575 | None:intergenic | 60.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:23000254-23000273 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:23000262-23000281 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_1:23000556-23000575 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22999686 | 23000621 | 22999686 | ID=Msa0201470;Name=Msa0201470 |
| chr2_1 | mRNA | 22999686 | 23000621 | 22999686 | ID=Msa0201470-mRNA-1;Parent=Msa0201470;Name=Msa0201470-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|311 |
| chr2_1 | exon | 22999686 | 23000621 | 22999686 | ID=Msa0201470-mRNA-1:exon:9016;Parent=Msa0201470-mRNA-1 |
| chr2_1 | CDS | 22999686 | 23000621 | 22999686 | ID=Msa0201470-mRNA-1:cds;Parent=Msa0201470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
