Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201450 | XP_013441887.1 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201450 | sp|Q7M443|CHIT2_TULSB | 33.007 | 306 | 164 | 11 | 15 | 310 | 1 | 275 | 1.14e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201450 | A0A072TEX8 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004940 | Msa0201450 | 0.801398 | 9.177485e-49 | -8.615850e-47 |
| Msa0078160 | Msa0201450 | -0.804111 | 2.527351e-49 | -8.615850e-47 |
| Msa0107830 | Msa0201450 | 0.824112 | 9.628841e-54 | -8.615850e-47 |
| Msa0121490 | Msa0201450 | 0.800679 | 1.286897e-48 | -8.615850e-47 |
| Msa0201430 | Msa0201450 | 0.916510 | 1.634022e-85 | -8.615850e-47 |
| Msa0201440 | Msa0201450 | 0.921190 | 4.917851e-88 | -8.615850e-47 |
| Msa0201450 | Msa0201460 | 0.900081 | 1.046096e-77 | -8.615850e-47 |
| Msa0201450 | Msa0201470 | 0.889838 | 1.691787e-73 | -8.615850e-47 |
| Msa0201450 | Msa0244020 | 0.904386 | 1.296105e-79 | -8.615850e-47 |
| Msa0201450 | Msa0244030 | 0.903787 | 2.417859e-79 | -8.615850e-47 |
| Msa0201450 | Msa0244040 | 0.909228 | 7.184668e-82 | -8.615850e-47 |
| Msa0201450 | Msa0244050 | 0.819922 | 9.005885e-53 | -8.615850e-47 |
| Msa0201450 | Msa0244060 | 0.928908 | 1.483088e-92 | -8.615850e-47 |
| Msa0201450 | Msa0244070 | 0.913887 | 3.653390e-84 | -8.615850e-47 |
| Msa0201450 | Msa0244080 | 0.905448 | 4.248843e-80 | -8.615850e-47 |
| Msa0201450 | Msa0261020 | -0.802885 | 4.536044e-49 | -8.615850e-47 |
| Msa0201450 | Msa0271700 | 0.802226 | 6.204583e-49 | -8.615850e-47 |
| Msa0201450 | Msa0282910 | 0.918149 | 2.224300e-86 | -8.615850e-47 |
| Msa0201450 | Msa0282920 | 0.928097 | 4.673204e-92 | -8.615850e-47 |
| Msa0201450 | Msa0282930 | 0.889237 | 2.899567e-73 | -8.615850e-47 |
| Msa0201450 | Msa0336550 | -0.807728 | 4.386816e-50 | -8.615850e-47 |
| Msa0201450 | Msa0350180 | 0.801334 | 9.454874e-49 | -8.615850e-47 |
| Msa0201450 | Msa0390200 | 0.818808 | 1.615924e-52 | -8.615850e-47 |
| Msa0201450 | Msa0415010 | 0.802153 | 6.422423e-49 | -8.615850e-47 |
| Msa0201450 | Msa0524710 | 0.801994 | 6.924068e-49 | -8.615850e-47 |
| Msa0201450 | Msa0561830 | 0.819767 | 9.768628e-53 | -8.615850e-47 |
| Msa0201450 | Msa0597820 | 0.819262 | 1.273602e-52 | -8.615850e-47 |
| Msa0201450 | Msa0614960 | 0.801522 | 8.654760e-49 | -8.615850e-47 |
| Msa0201450 | Msa0622800 | -0.807190 | 5.704491e-50 | -8.615850e-47 |
| Msa0201450 | Msa0655370 | 0.821568 | 3.767655e-53 | -8.615850e-47 |
| Msa0201450 | Msa0699170 | 0.806223 | 9.130155e-50 | -8.615850e-47 |
| Msa0201450 | Msa0750790 | 0.809188 | 2.140607e-50 | -8.615850e-47 |
| Msa0201450 | Msa0814660 | 0.802933 | 4.435152e-49 | -8.615850e-47 |
| Msa0201450 | Msa0847140 | 0.810106 | 1.359069e-50 | -8.615850e-47 |
| Msa0201450 | Msa0874750 | 0.802405 | 5.698935e-49 | -8.615850e-47 |
| Msa0201450 | Msa0910590 | 0.807823 | 4.187586e-50 | -8.615850e-47 |
| Msa0201450 | Msa0948430 | 0.810733 | 9.952611e-51 | -8.615850e-47 |
| Msa0201450 | Msa0974410 | -0.806414 | 8.322002e-50 | -8.615850e-47 |
| Msa0201450 | Msa0985380 | 0.805213 | 1.488036e-49 | -8.615850e-47 |
| Msa0201450 | Msa1040330 | 0.815513 | 8.894662e-52 | -8.615850e-47 |
| Msa0201450 | Msa1083660 | -0.814963 | 1.178574e-51 | -8.615850e-47 |
| Msa0201450 | Msa1085820 | 0.806709 | 7.210421e-50 | -8.615850e-47 |
| Msa0201450 | Msa1120960 | 0.811042 | 8.533667e-51 | -8.615850e-47 |
| Msa0201450 | Msa1191270 | 0.835849 | 1.320856e-56 | -8.615850e-47 |
| Msa0201450 | Msa1211320 | 0.803724 | 3.040421e-49 | -8.615850e-47 |
| Msa0201450 | Msa1259570 | 0.819330 | 1.229323e-52 | -8.615850e-47 |
| Msa0201450 | Msa1265940 | 0.806935 | 6.458711e-50 | -8.615850e-47 |
| Msa0201450 | Msa1303400 | 0.801929 | 7.139629e-49 | -8.615850e-47 |
| Msa0201450 | Msa1349420 | 0.803265 | 3.786395e-49 | -8.615850e-47 |
| Msa0201450 | Msa1381300 | -0.811847 | 5.703971e-51 | -8.615850e-47 |
| Msa0201450 | Msa1431020 | 0.807961 | 3.914062e-50 | -8.615850e-47 |
| Msa0201450 | Msa1437590 | 0.801353 | 9.370701e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201450 | MtrunA17_Chr2g0303381 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Msa0201450 | MtrunA17_Chr2g0303401 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Msa0201450 | MtrunA17_Chr2g0297811 | 57.692 | 312 | 123 | 6 | 4 | 311 | 3 | 309 | 1.24e-110 | 323 |
| Msa0201450 | MtrunA17_Chr2g0297801 | 57.692 | 312 | 123 | 6 | 4 | 311 | 3 | 309 | 1.24e-110 | 323 |
| Msa0201450 | MtrunA17_Chr2g0297791 | 57.692 | 312 | 123 | 6 | 4 | 311 | 3 | 309 | 1.24e-110 | 323 |
| Msa0201450 | MtrunA17_Chr2g0297731 | 47.883 | 307 | 137 | 7 | 14 | 308 | 2 | 297 | 2.95e-91 | 273 |
| Msa0201450 | MtrunA17_Chr8g0350511 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201450 | MtrunA17_Chr8g0350521 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201450 | MtrunA17_Chr8g0350541 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201450 | MtrunA17_Chr8g0350501 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201450 | MtrunA17_Chr8g0350531 | 48.344 | 302 | 139 | 4 | 12 | 310 | 276 | 563 | 1.06e-86 | 270 |
| Msa0201450 | MtrunA17_Chr8g0350531 | 46.154 | 299 | 130 | 5 | 12 | 304 | 12 | 285 | 5.65e-76 | 242 |
| Msa0201450 | MtrunA17_Chr8g0350551 | 45.695 | 302 | 133 | 4 | 12 | 310 | 12 | 285 | 7.11e-81 | 246 |
| Msa0201450 | MtrunA17_Chr2g0297761 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 4.72e-78 | 239 |
| Msa0201450 | MtrunA17_Chr2g0297771 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 4.72e-78 | 239 |
| Msa0201450 | MtrunA17_Chr2g0297781 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 4.72e-78 | 239 |
| Msa0201450 | MtrunA17_Chr8g0350441 | 42.617 | 298 | 150 | 7 | 14 | 309 | 13 | 291 | 3.94e-73 | 227 |
| Msa0201450 | MtrunA17_Chr8g0350431 | 42.857 | 294 | 147 | 7 | 14 | 305 | 13 | 287 | 3.17e-70 | 219 |
| Msa0201450 | MtrunA17_Chr8g0350421 | 42.857 | 294 | 147 | 7 | 14 | 305 | 13 | 287 | 3.17e-70 | 219 |
| Msa0201450 | MtrunA17_Chr8g0350411 | 42.857 | 294 | 147 | 7 | 14 | 305 | 13 | 287 | 3.17e-70 | 219 |
| Msa0201450 | MtrunA17_Chr8g0350451 | 41.967 | 305 | 140 | 9 | 9 | 311 | 9 | 278 | 1.25e-61 | 197 |
| Msa0201450 | MtrunA17_Chr8g0350461 | 41.967 | 305 | 140 | 9 | 9 | 311 | 9 | 278 | 1.25e-61 | 197 |
| Msa0201450 | MtrunA17_Chr8g0350471 | 41.967 | 305 | 140 | 9 | 9 | 311 | 9 | 278 | 1.25e-61 | 197 |
| Msa0201450 | MtrunA17_Chr6g0481561 | 30.961 | 281 | 159 | 9 | 16 | 287 | 34 | 288 | 5.09e-31 | 118 |
| Msa0201450 | MtrunA17_Chr2g0327601 | 31.915 | 282 | 155 | 10 | 16 | 287 | 31 | 285 | 1.10e-28 | 112 |
| Msa0201450 | MtrunA17_Chr2g0327611 | 31.273 | 275 | 154 | 11 | 15 | 279 | 28 | 277 | 1.51e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2_1:+22905906 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2_1:-22905858 | Msa0201450:CDS |
| CCCACTTCCACAAATTGTTT+TGG | 0.222288 | 2_1:-22905392 | Msa0201450:CDS |
| TGTAGCTAGTAATCAATTAT+TGG | 0.249179 | 2_1:+22905059 | None:intergenic |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2_1:-22905676 | Msa0201450:CDS |
| GGACACATATTCCATGGATT+TGG | 0.302531 | 2_1:+22905440 | None:intergenic |
| TTACGGTGAGCTTAAACTTT+TGG | 0.347612 | 2_1:-22905268 | Msa0201450:CDS |
| CCCAAAACAATTTGTGGAAG+TGG | 0.352009 | 2_1:+22905391 | None:intergenic |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2_1:+22905638 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2_1:-22905597 | Msa0201450:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2_1:-22905800 | Msa0201450:CDS |
| ACAATTTGTGGAAGTGGGCT+TGG | 0.395370 | 2_1:+22905397 | None:intergenic |
| TCATCATTGATGATATTAAC+AGG | 0.403312 | 2_1:+22905885 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2_1:-22905567 | Msa0201450:CDS |
| AATCAACTAATAACGGATTA+CGG | 0.451454 | 2_1:-22905285 | Msa0201450:CDS |
| ATCATCAAACTCATCCTTTG+AGG | 0.453286 | 2_1:+22905314 | None:intergenic |
| CGGTTCATCTTAGTATCAGC+TGG | 0.454457 | 2_1:+22905228 | None:intergenic |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2_1:+22905907 | None:intergenic |
| TGTGGTCCCAAAACAATTTG+TGG | 0.457892 | 2_1:+22905385 | None:intergenic |
| AGCATTTCCTCCAAGATGTA+AGG | 0.467593 | 2_1:+22905096 | None:intergenic |
| GATGTCATTGCTCGGTGGGT+TGG | 0.481116 | 2_1:+22905122 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2_1:-22905525 | Msa0201450:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2_1:-22905831 | Msa0201450:CDS |
| AACCGAGAGGTGTTCATTGA+GGG | 0.499384 | 2_1:-22905210 | Msa0201450:CDS |
| CGCCCTCAATGAACACCTCT+CGG | 0.504404 | 2_1:+22905208 | None:intergenic |
| TGACATCGAGCCTTACATCT+TGG | 0.507062 | 2_1:-22905106 | Msa0201450:CDS |
| TCTCTACAATCAACTAATAA+CGG | 0.510522 | 2_1:-22905292 | Msa0201450:CDS |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2_1:-22905819 | Msa0201450:CDS |
| CTAGTAATCAATTATTGGTA+AGG | 0.518596 | 2_1:+22905064 | None:intergenic |
| ATCAACAGCAAATCACTCCT+TGG | 0.519679 | 2_1:-22905174 | Msa0201450:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2_1:-22905685 | Msa0201450:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2_1:-22905501 | Msa0201450:CDS |
| ATTTGTGGAAGTGGGCTTGG+AGG | 0.521480 | 2_1:+22905400 | None:intergenic |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2_1:+22905491 | None:intergenic |
| CCAAAACAATTTGTGGAAGT+GGG | 0.526897 | 2_1:+22905392 | None:intergenic |
| GCTCGATGTCATTGCTCGGT+GGG | 0.532171 | 2_1:+22905118 | None:intergenic |
| GAGGAGCTCTGTCGGAGCAA+TGG | 0.538177 | 2_1:+22905419 | None:intergenic |
| TGGGCTTGGAGGAGCTCTGT+CGG | 0.547185 | 2_1:+22905411 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2_1:-22905720 | Msa0201450:CDS |
| CATCGAGCCTTACATCTTGG+AGG | 0.554478 | 2_1:-22905103 | Msa0201450:CDS |
| TCGAGAATACATTGGCGTGA+AGG | 0.556428 | 2_1:-22905934 | Msa0201450:CDS |
| GAAAGAACATAAGAATATGA+AGG | 0.556511 | 2_1:-22905736 | Msa0201450:CDS |
| TAAGCATGTATCCAAATCCA+TGG | 0.557313 | 2_1:-22905451 | Msa0201450:CDS |
| CATCTTAGTATCAGCTGGAT+CGG | 0.557541 | 2_1:+22905233 | None:intergenic |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2_1:+22905694 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2_1:-22905825 | Msa0201450:CDS |
| GAACCGAGAGGTGTTCATTG+AGG | 0.566347 | 2_1:-22905211 | Msa0201450:CDS |
| CAATCAAACTATATCCTCAA+AGG | 0.567378 | 2_1:-22905328 | Msa0201450:CDS |
| AGCAATGGACACATATTCCA+TGG | 0.567858 | 2_1:+22905434 | None:intergenic |
| GGCTCGATGTCATTGCTCGG+TGG | 0.574776 | 2_1:+22905117 | None:intergenic |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2_1:-22905524 | Msa0201450:CDS |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2_1:-22905711 | Msa0201450:CDS |
| TAAGGCTCGATGTCATTGCT+CGG | 0.600452 | 2_1:+22905114 | None:intergenic |
| AGTTATTAAACATCTCAAGA+AGG | 0.601516 | 2_1:-22905475 | Msa0201450:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2_1:-22905820 | Msa0201450:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2_1:+22905850 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2_1:+22905595 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2_1:+22905830 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2_1:+22905568 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2_1:-22905844 | Msa0201450:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2_1:-22905717 | Msa0201450:CDS |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2_1:-22905523 | Msa0201450:CDS |
| TGATACTAAGATGAACCGAG+AGG | 0.777827 | 2_1:-22905223 | Msa0201450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22905113-22905132 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22905113-22905132 | Msa0201450:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22905151-22905170 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22905173-22905192 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22905319-22905338 | Msa0201450:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22905335-22905354 | Msa0201450:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22905370-22905389 | Msa0201450:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:22905580-22905599 | Msa0201450:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_1:22905763-22905782 | Msa0201450:CDS | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | chr2_1:22905770-22905789 | Msa0201450:CDS | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22905113-22905132 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22905113-22905132 | Msa0201450:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22905151-22905170 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22905173-22905192 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22905319-22905338 | Msa0201450:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22905335-22905354 | Msa0201450:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22905370-22905389 | Msa0201450:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:22905580-22905599 | Msa0201450:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_1:22905763-22905782 | Msa0201450:CDS | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | chr2_1:22905770-22905789 | Msa0201450:CDS | 25.0% |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22905102-22905121 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22905152-22905171 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22905197-22905216 | Msa0201450:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22905235-22905254 | Msa0201450:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22905236-22905255 | Msa0201450:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22905298-22905317 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22905299-22905318 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22905380-22905399 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22905379-22905398 | Msa0201450:CDS | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:22905691-22905710 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_1:22905727-22905746 | Msa0201450:CDS | 30.0% | |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22905102-22905121 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22905152-22905171 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22905197-22905216 | Msa0201450:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22905235-22905254 | Msa0201450:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22905236-22905255 | Msa0201450:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22905298-22905317 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22905299-22905318 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22905380-22905399 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22905379-22905398 | Msa0201450:CDS | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:22905691-22905710 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_1:22905727-22905746 | Msa0201450:CDS | 30.0% | |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22905087-22905106 | Msa0201450:CDS | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22905230-22905249 | Msa0201450:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22905338-22905357 | Msa0201450:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22905364-22905383 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22905384-22905403 | Msa0201450:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:22905389-22905408 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:22905458-22905477 | Msa0201450:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:22905463-22905482 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:22905530-22905549 | Msa0201450:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:22905531-22905550 | Msa0201450:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:22905567-22905586 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:22905604-22905623 | Msa0201450:CDS | 35.0% | |
| CCAAAACAATTTGTGGAAGT+GGG | + | chr2_1:22905666-22905685 | None:intergenic | 35.0% | |
| ! | CCACTTCCACAAATTGTTTT+GGG | - | chr2_1:22905664-22905683 | Msa0201450:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:22905676-22905695 | Msa0201450:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_1:22905744-22905763 | None:intergenic | 35.0% | |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | chr2_1:22905787-22905806 | Msa0201450:CDS | 35.0% |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22905087-22905106 | Msa0201450:CDS | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22905230-22905249 | Msa0201450:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22905338-22905357 | Msa0201450:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22905364-22905383 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22905384-22905403 | Msa0201450:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:22905389-22905408 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:22905458-22905477 | Msa0201450:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:22905463-22905482 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:22905530-22905549 | Msa0201450:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:22905531-22905550 | Msa0201450:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:22905567-22905586 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:22905604-22905623 | Msa0201450:CDS | 35.0% | |
| CCAAAACAATTTGTGGAAGT+GGG | + | chr2_1:22905666-22905685 | None:intergenic | 35.0% | |
| ! | CCACTTCCACAAATTGTTTT+GGG | - | chr2_1:22905664-22905683 | Msa0201450:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:22905676-22905695 | Msa0201450:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_1:22905744-22905763 | None:intergenic | 35.0% | |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | chr2_1:22905787-22905806 | Msa0201450:CDS | 35.0% |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22905228-22905247 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:22905420-22905439 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:22905490-22905509 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:22905488-22905507 | Msa0201450:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:22905532-22905551 | Msa0201450:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:22905618-22905637 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:22905624-22905643 | None:intergenic | 40.0% | |
| ! | CCCACTTCCACAAATTGTTT+TGG | - | chr2_1:22905663-22905682 | Msa0201450:CDS | 40.0% |
| CCCAAAACAATTTGTGGAAG+TGG | + | chr2_1:22905667-22905686 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_1:22905673-22905692 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_1:22905825-22905844 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_1:22905832-22905851 | Msa0201450:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_1:22905881-22905900 | Msa0201450:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_1:22905894-22905913 | Msa0201450:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_1:22905901-22905920 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_1:22905962-22905981 | None:intergenic | 40.0% | |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22905228-22905247 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:22905420-22905439 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:22905490-22905509 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:22905488-22905507 | Msa0201450:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:22905532-22905551 | Msa0201450:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:22905618-22905637 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:22905624-22905643 | None:intergenic | 40.0% | |
| ! | CCCACTTCCACAAATTGTTT+TGG | - | chr2_1:22905663-22905682 | Msa0201450:CDS | 40.0% |
| CCCAAAACAATTTGTGGAAG+TGG | + | chr2_1:22905667-22905686 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_1:22905673-22905692 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_1:22905825-22905844 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_1:22905832-22905851 | Msa0201450:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_1:22905881-22905900 | Msa0201450:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_1:22905894-22905913 | Msa0201450:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_1:22905901-22905920 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_1:22905962-22905981 | None:intergenic | 40.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22905121-22905140 | Msa0201450:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22905224-22905243 | Msa0201450:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22905344-22905363 | Msa0201450:CDS | 45.0% | |
| ! | ACAATTTGTGGAAGTGGGCT+TGG | + | chr2_1:22905661-22905680 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_1:22905791-22905810 | Msa0201450:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_1:22905830-22905849 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_1:22905845-22905864 | Msa0201450:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_1:22905944-22905963 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_1:22905949-22905968 | Msa0201450:CDS | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22905121-22905140 | Msa0201450:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22905224-22905243 | Msa0201450:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22905344-22905363 | Msa0201450:CDS | 45.0% | |
| ! | ACAATTTGTGGAAGTGGGCT+TGG | + | chr2_1:22905661-22905680 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_1:22905791-22905810 | Msa0201450:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_1:22905830-22905849 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_1:22905845-22905864 | Msa0201450:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_1:22905944-22905963 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_1:22905949-22905968 | Msa0201450:CDS | 45.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22905208-22905227 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:22905554-22905573 | Msa0201450:CDS | 50.0% |
| ! | ATTTGTGGAAGTGGGCTTGG+AGG | + | chr2_1:22905658-22905677 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_1:22905844-22905863 | Msa0201450:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_1:22905952-22905971 | Msa0201450:CDS | 50.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22905208-22905227 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:22905554-22905573 | Msa0201450:CDS | 50.0% |
| ! | ATTTGTGGAAGTGGGCTTGG+AGG | + | chr2_1:22905658-22905677 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_1:22905844-22905863 | Msa0201450:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_1:22905952-22905971 | Msa0201450:CDS | 50.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22905211-22905230 | Msa0201450:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22905255-22905274 | Msa0201450:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_1:22905850-22905869 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_1:22905936-22905955 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_1:22905940-22905959 | None:intergenic | 55.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22905211-22905230 | Msa0201450:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22905255-22905274 | Msa0201450:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_1:22905850-22905869 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_1:22905936-22905955 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_1:22905940-22905959 | None:intergenic | 55.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:22905639-22905658 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:22905647-22905666 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_1:22905941-22905960 | None:intergenic | 60.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:22905639-22905658 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:22905647-22905666 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_1:22905941-22905960 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22905071 | 22906006 | 22905071 | ID=Msa0201450;Name=Msa0201450 |
| chr2_1 | mRNA | 22905071 | 22906006 | 22905071 | ID=Msa0201450-mRNA-1;Parent=Msa0201450;Name=Msa0201450-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|311 |
| chr2_1 | exon | 22905071 | 22906006 | 22905071 | ID=Msa0201450-mRNA-1:exon:8983;Parent=Msa0201450-mRNA-1 |
| chr2_1 | CDS | 22905071 | 22906006 | 22905071 | ID=Msa0201450-mRNA-1:cds;Parent=Msa0201450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
