Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201440 | XP_013441887.1 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201440 | sp|Q7M443|CHIT2_TULSB | 33.007 | 306 | 164 | 11 | 15 | 310 | 1 | 275 | 1.14e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201440 | A0A072TEX8 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004940 | Msa0201440 | 0.804080 | 2.565030e-49 | -8.615850e-47 |
| Msa0047560 | Msa0201440 | -0.804121 | 2.515233e-49 | -8.615850e-47 |
| Msa0056290 | Msa0201440 | 0.802368 | 5.799769e-49 | -8.615850e-47 |
| Msa0078160 | Msa0201440 | -0.814626 | 1.400163e-51 | -8.615850e-47 |
| Msa0078170 | Msa0201440 | -0.801073 | 1.069245e-48 | -8.615850e-47 |
| Msa0098380 | Msa0201440 | 0.802134 | 6.480688e-49 | -8.615850e-47 |
| Msa0107830 | Msa0201440 | 0.810303 | 1.232504e-50 | -8.615850e-47 |
| Msa0111780 | Msa0201440 | 0.801475 | 8.846970e-49 | -8.615850e-47 |
| Msa0121470 | Msa0201440 | 0.806479 | 8.061760e-50 | -8.615850e-47 |
| Msa0121490 | Msa0201440 | 0.809369 | 1.957753e-50 | -8.615850e-47 |
| Msa0136090 | Msa0201440 | 0.819628 | 1.051099e-52 | -8.615850e-47 |
| Msa0145990 | Msa0201440 | -0.802103 | 6.574883e-49 | -8.615850e-47 |
| Msa0201430 | Msa0201440 | 0.924051 | 1.180292e-89 | -8.615850e-47 |
| Msa0201440 | Msa0201450 | 0.921190 | 4.917851e-88 | -8.615850e-47 |
| Msa0201440 | Msa0201460 | 0.920603 | 1.038006e-87 | -8.615850e-47 |
| Msa0201440 | Msa0201470 | 0.895078 | 1.348747e-75 | -8.615850e-47 |
| Msa0201440 | Msa0211460 | 0.805076 | 1.589496e-49 | -8.615850e-47 |
| Msa0201440 | Msa0244020 | 0.912505 | 1.803947e-83 | -8.615850e-47 |
| Msa0201440 | Msa0244030 | 0.930070 | 2.793132e-93 | -8.615850e-47 |
| Msa0201440 | Msa0244040 | 0.905593 | 3.642582e-80 | -8.615850e-47 |
| Msa0201440 | Msa0244050 | 0.852249 | 5.225165e-61 | -8.615850e-47 |
| Msa0201440 | Msa0244060 | 0.931844 | 2.069414e-94 | -8.615850e-47 |
| Msa0201440 | Msa0244070 | 0.922842 | 5.805828e-89 | -8.615850e-47 |
| Msa0201440 | Msa0244080 | 0.896347 | 4.023590e-76 | -8.615850e-47 |
| Msa0201440 | Msa0261020 | -0.816414 | 5.599717e-52 | -8.615850e-47 |
| Msa0201440 | Msa0275730 | 0.801158 | 1.027637e-48 | -8.615850e-47 |
| Msa0201440 | Msa0282910 | 0.909412 | 5.864535e-82 | -8.615850e-47 |
| Msa0201440 | Msa0282920 | 0.926556 | 3.985164e-91 | -8.615850e-47 |
| Msa0201440 | Msa0282930 | 0.876634 | 1.194506e-68 | -8.615850e-47 |
| Msa0201440 | Msa0336460 | 0.803626 | 3.187139e-49 | -8.615850e-47 |
| Msa0201440 | Msa0336520 | 0.803118 | 4.061119e-49 | -8.615850e-47 |
| Msa0201440 | Msa0336550 | -0.812876 | 3.400548e-51 | -8.615850e-47 |
| Msa0201440 | Msa0350180 | 0.810072 | 1.382687e-50 | -8.615850e-47 |
| Msa0201440 | Msa0355990 | -0.800262 | 1.565007e-48 | -8.615850e-47 |
| Msa0201440 | Msa0390200 | 0.806139 | 9.510641e-50 | -8.615850e-47 |
| Msa0201440 | Msa0415010 | 0.812077 | 5.081674e-51 | -8.615850e-47 |
| Msa0201440 | Msa0433090 | 0.817391 | 3.378252e-52 | -8.615850e-47 |
| Msa0201440 | Msa0459930 | 0.807818 | 4.197093e-50 | -8.615850e-47 |
| Msa0201440 | Msa0524710 | 0.826343 | 2.858029e-54 | -8.615850e-47 |
| Msa0201440 | Msa0561830 | 0.821813 | 3.307166e-53 | -8.615850e-47 |
| Msa0201440 | Msa0572700 | 0.800837 | 1.195073e-48 | -8.615850e-47 |
| Msa0201440 | Msa0597800 | 0.810017 | 1.420784e-50 | -8.615850e-47 |
| Msa0201440 | Msa0597820 | 0.808629 | 2.819615e-50 | -8.615850e-47 |
| Msa0201440 | Msa0614960 | 0.811769 | 5.933169e-51 | -8.615850e-47 |
| Msa0201440 | Msa0622800 | -0.812210 | 4.755514e-51 | -8.615850e-47 |
| Msa0201440 | Msa0655370 | 0.825482 | 4.576959e-54 | -8.615850e-47 |
| Msa0201440 | Msa0699170 | 0.816599 | 5.089550e-52 | -8.615850e-47 |
| Msa0201440 | Msa0750790 | 0.820559 | 6.433659e-53 | -8.615850e-47 |
| Msa0201440 | Msa0846870 | 0.801661 | 8.104653e-49 | -8.615850e-47 |
| Msa0201440 | Msa0847140 | 0.817263 | 3.611409e-52 | -8.615850e-47 |
| Msa0201440 | Msa0871420 | 0.806794 | 6.919020e-50 | -8.615850e-47 |
| Msa0201440 | Msa0886370 | 0.802053 | 6.733431e-49 | -8.615850e-47 |
| Msa0201440 | Msa0910560 | 0.805841 | 1.098482e-49 | -8.615850e-47 |
| Msa0201440 | Msa0910590 | 0.826809 | 2.212068e-54 | -8.615850e-47 |
| Msa0201440 | Msa0913500 | 0.819653 | 1.037419e-52 | -8.615850e-47 |
| Msa0201440 | Msa0936630 | 0.809160 | 2.170578e-50 | -8.615850e-47 |
| Msa0201440 | Msa0948430 | 0.820949 | 5.233008e-53 | -8.615850e-47 |
| Msa0201440 | Msa0974410 | -0.820605 | 6.278353e-53 | -8.615850e-47 |
| Msa0201440 | Msa0985380 | 0.801338 | 9.438256e-49 | -8.615850e-47 |
| Msa0201440 | Msa1039150 | -0.802790 | 4.747235e-49 | -8.615850e-47 |
| Msa0201440 | Msa1040330 | 0.824401 | 8.236977e-54 | -8.615850e-47 |
| Msa0201440 | Msa1083660 | -0.815591 | 8.546188e-52 | -8.615850e-47 |
| Msa0201440 | Msa1084340 | -0.810499 | 1.117974e-50 | -8.615850e-47 |
| Msa0201440 | Msa1085820 | 0.827877 | 1.227008e-54 | -8.615850e-47 |
| Msa0201440 | Msa1090180 | 0.805038 | 1.619138e-49 | -8.615850e-47 |
| Msa0201440 | Msa1120960 | 0.811156 | 8.061596e-51 | -8.615850e-47 |
| Msa0201440 | Msa1156670 | 0.814889 | 1.224426e-51 | -8.615850e-47 |
| Msa0201440 | Msa1165860 | 0.806871 | 6.663469e-50 | -8.615850e-47 |
| Msa0201440 | Msa1191270 | 0.842570 | 2.384873e-58 | -8.615850e-47 |
| Msa0201440 | Msa1211320 | 0.806525 | 7.884203e-50 | -8.615850e-47 |
| Msa0201440 | Msa1221520 | 0.801196 | 1.009091e-48 | -8.615850e-47 |
| Msa0201440 | Msa1259570 | 0.814430 | 1.546553e-51 | -8.615850e-47 |
| Msa0201440 | Msa1265940 | 0.807565 | 4.750355e-50 | -8.615850e-47 |
| Msa0201440 | Msa1280360 | 0.804955 | 1.684488e-49 | -8.615850e-47 |
| Msa0201440 | Msa1303400 | 0.810104 | 1.360353e-50 | -8.615850e-47 |
| Msa0201440 | Msa1349420 | 0.817277 | 3.584779e-52 | -8.615850e-47 |
| Msa0201440 | Msa1381300 | -0.813337 | 2.693177e-51 | -8.615850e-47 |
| Msa0201440 | Msa1417220 | 0.809442 | 1.888826e-50 | -8.615850e-47 |
| Msa0201440 | Msa1431020 | 0.814864 | 1.239728e-51 | -8.615850e-47 |
| Msa0201440 | Msa1437590 | 0.826234 | 3.034089e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201440 | MtrunA17_Chr2g0303381 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Msa0201440 | MtrunA17_Chr2g0303401 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Msa0201440 | MtrunA17_Chr2g0297811 | 57.692 | 312 | 123 | 6 | 4 | 311 | 3 | 309 | 1.24e-110 | 323 |
| Msa0201440 | MtrunA17_Chr2g0297801 | 57.692 | 312 | 123 | 6 | 4 | 311 | 3 | 309 | 1.24e-110 | 323 |
| Msa0201440 | MtrunA17_Chr2g0297791 | 57.692 | 312 | 123 | 6 | 4 | 311 | 3 | 309 | 1.24e-110 | 323 |
| Msa0201440 | MtrunA17_Chr2g0297731 | 47.883 | 307 | 137 | 7 | 14 | 308 | 2 | 297 | 2.95e-91 | 273 |
| Msa0201440 | MtrunA17_Chr8g0350511 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201440 | MtrunA17_Chr8g0350521 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201440 | MtrunA17_Chr8g0350541 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201440 | MtrunA17_Chr8g0350501 | 48.344 | 302 | 139 | 4 | 12 | 310 | 12 | 299 | 3.61e-90 | 271 |
| Msa0201440 | MtrunA17_Chr8g0350531 | 48.344 | 302 | 139 | 4 | 12 | 310 | 276 | 563 | 1.06e-86 | 270 |
| Msa0201440 | MtrunA17_Chr8g0350531 | 46.154 | 299 | 130 | 5 | 12 | 304 | 12 | 285 | 5.65e-76 | 242 |
| Msa0201440 | MtrunA17_Chr8g0350551 | 45.695 | 302 | 133 | 4 | 12 | 310 | 12 | 285 | 7.11e-81 | 246 |
| Msa0201440 | MtrunA17_Chr2g0297761 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 4.72e-78 | 239 |
| Msa0201440 | MtrunA17_Chr2g0297771 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 4.72e-78 | 239 |
| Msa0201440 | MtrunA17_Chr2g0297781 | 46.557 | 305 | 138 | 10 | 16 | 308 | 4 | 295 | 4.72e-78 | 239 |
| Msa0201440 | MtrunA17_Chr8g0350441 | 42.617 | 298 | 150 | 7 | 14 | 309 | 13 | 291 | 3.94e-73 | 227 |
| Msa0201440 | MtrunA17_Chr8g0350431 | 42.857 | 294 | 147 | 7 | 14 | 305 | 13 | 287 | 3.17e-70 | 219 |
| Msa0201440 | MtrunA17_Chr8g0350421 | 42.857 | 294 | 147 | 7 | 14 | 305 | 13 | 287 | 3.17e-70 | 219 |
| Msa0201440 | MtrunA17_Chr8g0350411 | 42.857 | 294 | 147 | 7 | 14 | 305 | 13 | 287 | 3.17e-70 | 219 |
| Msa0201440 | MtrunA17_Chr8g0350451 | 41.967 | 305 | 140 | 9 | 9 | 311 | 9 | 278 | 1.25e-61 | 197 |
| Msa0201440 | MtrunA17_Chr8g0350461 | 41.967 | 305 | 140 | 9 | 9 | 311 | 9 | 278 | 1.25e-61 | 197 |
| Msa0201440 | MtrunA17_Chr8g0350471 | 41.967 | 305 | 140 | 9 | 9 | 311 | 9 | 278 | 1.25e-61 | 197 |
| Msa0201440 | MtrunA17_Chr6g0481561 | 30.961 | 281 | 159 | 9 | 16 | 287 | 34 | 288 | 5.09e-31 | 118 |
| Msa0201440 | MtrunA17_Chr2g0327601 | 31.915 | 282 | 155 | 10 | 16 | 287 | 31 | 285 | 1.10e-28 | 112 |
| Msa0201440 | MtrunA17_Chr2g0327611 | 31.273 | 275 | 154 | 11 | 15 | 279 | 28 | 277 | 1.51e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2_1:+22900992 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2_1:-22900944 | Msa0201440:CDS |
| CCCACTTCCACAAATTGTTT+TGG | 0.222288 | 2_1:-22900478 | Msa0201440:CDS |
| TGTAGCTAGTAATCAATTAT+TGG | 0.249179 | 2_1:+22900145 | None:intergenic |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2_1:-22900762 | Msa0201440:CDS |
| GGACACATATTCCATGGATT+TGG | 0.302531 | 2_1:+22900526 | None:intergenic |
| TTACGGTGAGCTTAAACTTT+TGG | 0.347612 | 2_1:-22900354 | Msa0201440:CDS |
| CCCAAAACAATTTGTGGAAG+TGG | 0.352009 | 2_1:+22900477 | None:intergenic |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2_1:+22900724 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2_1:-22900683 | Msa0201440:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2_1:-22900886 | Msa0201440:CDS |
| ACAATTTGTGGAAGTGGGCT+TGG | 0.395370 | 2_1:+22900483 | None:intergenic |
| TCATCATTGATGATATTAAC+AGG | 0.403312 | 2_1:+22900971 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2_1:-22900653 | Msa0201440:CDS |
| AATCAACTAATAACGGATTA+CGG | 0.451454 | 2_1:-22900371 | Msa0201440:CDS |
| ATCATCAAACTCATCCTTTG+AGG | 0.453286 | 2_1:+22900400 | None:intergenic |
| CGGTTCATCTTAGTATCAGC+TGG | 0.454457 | 2_1:+22900314 | None:intergenic |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2_1:+22900993 | None:intergenic |
| TGTGGTCCCAAAACAATTTG+TGG | 0.457892 | 2_1:+22900471 | None:intergenic |
| AGCATTTCCTCCAAGATGTA+AGG | 0.467593 | 2_1:+22900182 | None:intergenic |
| GATGTCATTGCTCGGTGGGT+TGG | 0.481116 | 2_1:+22900208 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2_1:-22900611 | Msa0201440:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2_1:-22900917 | Msa0201440:CDS |
| AACCGAGAGGTGTTCATTGA+GGG | 0.499384 | 2_1:-22900296 | Msa0201440:CDS |
| CGCCCTCAATGAACACCTCT+CGG | 0.504404 | 2_1:+22900294 | None:intergenic |
| TGACATCGAGCCTTACATCT+TGG | 0.507062 | 2_1:-22900192 | Msa0201440:CDS |
| TCTCTACAATCAACTAATAA+CGG | 0.510522 | 2_1:-22900378 | Msa0201440:CDS |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2_1:-22900905 | Msa0201440:CDS |
| CTAGTAATCAATTATTGGTA+AGG | 0.518596 | 2_1:+22900150 | None:intergenic |
| ATCAACAGCAAATCACTCCT+TGG | 0.519679 | 2_1:-22900260 | Msa0201440:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2_1:-22900771 | Msa0201440:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2_1:-22900587 | Msa0201440:CDS |
| ATTTGTGGAAGTGGGCTTGG+AGG | 0.521480 | 2_1:+22900486 | None:intergenic |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2_1:+22900577 | None:intergenic |
| CCAAAACAATTTGTGGAAGT+GGG | 0.526897 | 2_1:+22900478 | None:intergenic |
| GCTCGATGTCATTGCTCGGT+GGG | 0.532171 | 2_1:+22900204 | None:intergenic |
| GAGGAGCTCTGTCGGAGCAA+TGG | 0.538177 | 2_1:+22900505 | None:intergenic |
| TGGGCTTGGAGGAGCTCTGT+CGG | 0.547185 | 2_1:+22900497 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2_1:-22900806 | Msa0201440:CDS |
| CATCGAGCCTTACATCTTGG+AGG | 0.554478 | 2_1:-22900189 | Msa0201440:CDS |
| TCGAGAATACATTGGCGTGA+AGG | 0.556428 | 2_1:-22901020 | Msa0201440:CDS |
| GAAAGAACATAAGAATATGA+AGG | 0.556511 | 2_1:-22900822 | Msa0201440:CDS |
| TAAGCATGTATCCAAATCCA+TGG | 0.557313 | 2_1:-22900537 | Msa0201440:CDS |
| CATCTTAGTATCAGCTGGAT+CGG | 0.557541 | 2_1:+22900319 | None:intergenic |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2_1:+22900780 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2_1:-22900911 | Msa0201440:CDS |
| GAACCGAGAGGTGTTCATTG+AGG | 0.566347 | 2_1:-22900297 | Msa0201440:CDS |
| CAATCAAACTATATCCTCAA+AGG | 0.567378 | 2_1:-22900414 | Msa0201440:CDS |
| AGCAATGGACACATATTCCA+TGG | 0.567858 | 2_1:+22900520 | None:intergenic |
| GGCTCGATGTCATTGCTCGG+TGG | 0.574776 | 2_1:+22900203 | None:intergenic |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2_1:-22900610 | Msa0201440:CDS |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2_1:-22900797 | Msa0201440:CDS |
| TAAGGCTCGATGTCATTGCT+CGG | 0.600452 | 2_1:+22900200 | None:intergenic |
| AGTTATTAAACATCTCAAGA+AGG | 0.601516 | 2_1:-22900561 | Msa0201440:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2_1:-22900906 | Msa0201440:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2_1:+22900936 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2_1:+22900681 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2_1:+22900916 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2_1:+22900654 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2_1:-22900930 | Msa0201440:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2_1:-22900803 | Msa0201440:CDS |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2_1:-22900609 | Msa0201440:CDS |
| TGATACTAAGATGAACCGAG+AGG | 0.777827 | 2_1:-22900309 | Msa0201440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22900199-22900218 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22900199-22900218 | Msa0201440:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22900237-22900256 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22900259-22900278 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22900405-22900424 | Msa0201440:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22900421-22900440 | Msa0201440:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22900456-22900475 | Msa0201440:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:22900666-22900685 | Msa0201440:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_1:22900849-22900868 | Msa0201440:CDS | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | chr2_1:22900856-22900875 | Msa0201440:CDS | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22900199-22900218 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22900199-22900218 | Msa0201440:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22900237-22900256 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22900259-22900278 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22900405-22900424 | Msa0201440:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22900421-22900440 | Msa0201440:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22900456-22900475 | Msa0201440:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:22900666-22900685 | Msa0201440:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_1:22900849-22900868 | Msa0201440:CDS | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | chr2_1:22900856-22900875 | Msa0201440:CDS | 25.0% |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22900188-22900207 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22900238-22900257 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22900283-22900302 | Msa0201440:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22900321-22900340 | Msa0201440:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22900322-22900341 | Msa0201440:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22900384-22900403 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22900385-22900404 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22900466-22900485 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22900465-22900484 | Msa0201440:CDS | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:22900777-22900796 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_1:22900813-22900832 | Msa0201440:CDS | 30.0% | |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22900188-22900207 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22900238-22900257 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22900283-22900302 | Msa0201440:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22900321-22900340 | Msa0201440:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22900322-22900341 | Msa0201440:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22900384-22900403 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22900385-22900404 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22900466-22900485 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22900465-22900484 | Msa0201440:CDS | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:22900777-22900796 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_1:22900813-22900832 | Msa0201440:CDS | 30.0% | |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22900173-22900192 | Msa0201440:CDS | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22900316-22900335 | Msa0201440:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22900424-22900443 | Msa0201440:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22900450-22900469 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22900470-22900489 | Msa0201440:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:22900475-22900494 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:22900544-22900563 | Msa0201440:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:22900549-22900568 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:22900616-22900635 | Msa0201440:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:22900617-22900636 | Msa0201440:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:22900653-22900672 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:22900690-22900709 | Msa0201440:CDS | 35.0% | |
| CCAAAACAATTTGTGGAAGT+GGG | + | chr2_1:22900752-22900771 | None:intergenic | 35.0% | |
| ! | CCACTTCCACAAATTGTTTT+GGG | - | chr2_1:22900750-22900769 | Msa0201440:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:22900762-22900781 | Msa0201440:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_1:22900830-22900849 | None:intergenic | 35.0% | |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | chr2_1:22900873-22900892 | Msa0201440:CDS | 35.0% |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22900173-22900192 | Msa0201440:CDS | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22900316-22900335 | Msa0201440:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22900424-22900443 | Msa0201440:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22900450-22900469 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22900470-22900489 | Msa0201440:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:22900475-22900494 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:22900544-22900563 | Msa0201440:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:22900549-22900568 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:22900616-22900635 | Msa0201440:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:22900617-22900636 | Msa0201440:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:22900653-22900672 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:22900690-22900709 | Msa0201440:CDS | 35.0% | |
| CCAAAACAATTTGTGGAAGT+GGG | + | chr2_1:22900752-22900771 | None:intergenic | 35.0% | |
| ! | CCACTTCCACAAATTGTTTT+GGG | - | chr2_1:22900750-22900769 | Msa0201440:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:22900762-22900781 | Msa0201440:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_1:22900830-22900849 | None:intergenic | 35.0% | |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | chr2_1:22900873-22900892 | Msa0201440:CDS | 35.0% |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22900314-22900333 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:22900506-22900525 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:22900576-22900595 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:22900574-22900593 | Msa0201440:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:22900618-22900637 | Msa0201440:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:22900704-22900723 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:22900710-22900729 | None:intergenic | 40.0% | |
| ! | CCCACTTCCACAAATTGTTT+TGG | - | chr2_1:22900749-22900768 | Msa0201440:CDS | 40.0% |
| CCCAAAACAATTTGTGGAAG+TGG | + | chr2_1:22900753-22900772 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_1:22900759-22900778 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_1:22900911-22900930 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_1:22900918-22900937 | Msa0201440:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_1:22900967-22900986 | Msa0201440:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_1:22900980-22900999 | Msa0201440:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_1:22900987-22901006 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_1:22901048-22901067 | None:intergenic | 40.0% | |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22900314-22900333 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:22900506-22900525 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:22900576-22900595 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:22900574-22900593 | Msa0201440:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:22900618-22900637 | Msa0201440:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:22900704-22900723 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:22900710-22900729 | None:intergenic | 40.0% | |
| ! | CCCACTTCCACAAATTGTTT+TGG | - | chr2_1:22900749-22900768 | Msa0201440:CDS | 40.0% |
| CCCAAAACAATTTGTGGAAG+TGG | + | chr2_1:22900753-22900772 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_1:22900759-22900778 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_1:22900911-22900930 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_1:22900918-22900937 | Msa0201440:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_1:22900967-22900986 | Msa0201440:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_1:22900980-22900999 | Msa0201440:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_1:22900987-22901006 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_1:22901048-22901067 | None:intergenic | 40.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22900207-22900226 | Msa0201440:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22900310-22900329 | Msa0201440:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22900430-22900449 | Msa0201440:CDS | 45.0% | |
| ! | ACAATTTGTGGAAGTGGGCT+TGG | + | chr2_1:22900747-22900766 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_1:22900877-22900896 | Msa0201440:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_1:22900916-22900935 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_1:22900931-22900950 | Msa0201440:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_1:22901030-22901049 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_1:22901035-22901054 | Msa0201440:CDS | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22900207-22900226 | Msa0201440:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22900310-22900329 | Msa0201440:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22900430-22900449 | Msa0201440:CDS | 45.0% | |
| ! | ACAATTTGTGGAAGTGGGCT+TGG | + | chr2_1:22900747-22900766 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_1:22900877-22900896 | Msa0201440:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_1:22900916-22900935 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_1:22900931-22900950 | Msa0201440:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_1:22901030-22901049 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_1:22901035-22901054 | Msa0201440:CDS | 45.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22900294-22900313 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:22900640-22900659 | Msa0201440:CDS | 50.0% |
| ! | ATTTGTGGAAGTGGGCTTGG+AGG | + | chr2_1:22900744-22900763 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_1:22900930-22900949 | Msa0201440:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_1:22901038-22901057 | Msa0201440:CDS | 50.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22900294-22900313 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:22900640-22900659 | Msa0201440:CDS | 50.0% |
| ! | ATTTGTGGAAGTGGGCTTGG+AGG | + | chr2_1:22900744-22900763 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_1:22900930-22900949 | Msa0201440:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_1:22901038-22901057 | Msa0201440:CDS | 50.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22900297-22900316 | Msa0201440:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22900341-22900360 | Msa0201440:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_1:22900936-22900955 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_1:22901022-22901041 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_1:22901026-22901045 | None:intergenic | 55.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22900297-22900316 | Msa0201440:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22900341-22900360 | Msa0201440:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_1:22900936-22900955 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_1:22901022-22901041 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_1:22901026-22901045 | None:intergenic | 55.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:22900725-22900744 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:22900733-22900752 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_1:22901027-22901046 | None:intergenic | 60.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:22900725-22900744 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:22900733-22900752 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_1:22901027-22901046 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22900157 | 22901092 | 22900157 | ID=Msa0201440;Name=Msa0201440 |
| chr2_1 | mRNA | 22900157 | 22901092 | 22900157 | ID=Msa0201440-mRNA-1;Parent=Msa0201440;Name=Msa0201440-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|311 |
| chr2_1 | exon | 22900157 | 22901092 | 22900157 | ID=Msa0201440-mRNA-1:exon:8982;Parent=Msa0201440-mRNA-1 |
| chr2_1 | CDS | 22900157 | 22901092 | 22900157 | ID=Msa0201440-mRNA-1:cds;Parent=Msa0201440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
