Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201430 | XP_013441887.1 | 82.990 | 194 | 13 | 3 | 1 | 176 | 23 | 214 | 1.50e-108 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201430 | sp|Q7M443|CHIT2_TULSB | 31.148 | 183 | 85 | 8 | 16 | 176 | 21 | 184 | 4.49e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201430 | A0A072TEX8 | 82.990 | 194 | 13 | 3 | 1 | 176 | 23 | 214 | 7.15e-109 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201430 | Msa0201440 | 0.924051 | 1.180292e-89 | -8.615850e-47 |
| Msa0201430 | Msa0201450 | 0.916510 | 1.634022e-85 | -8.615850e-47 |
| Msa0201430 | Msa0201460 | 0.887685 | 1.147835e-72 | -8.615850e-47 |
| Msa0201430 | Msa0201470 | 0.891378 | 4.194364e-74 | -8.615850e-47 |
| Msa0201430 | Msa0244020 | 0.906243 | 1.827675e-80 | -8.615850e-47 |
| Msa0201430 | Msa0244030 | 0.893284 | 7.253461e-75 | -8.615850e-47 |
| Msa0201430 | Msa0244040 | 0.888537 | 5.407666e-73 | -8.615850e-47 |
| Msa0201430 | Msa0244050 | 0.841340 | 5.041267e-58 | -8.615850e-47 |
| Msa0201430 | Msa0244060 | 0.920243 | 1.637068e-87 | -8.615850e-47 |
| Msa0201430 | Msa0244070 | 0.922380 | 1.060072e-88 | -8.615850e-47 |
| Msa0201430 | Msa0244080 | 0.873933 | 1.001121e-67 | -8.615850e-47 |
| Msa0201430 | Msa0282910 | 0.895115 | 1.302468e-75 | -8.615850e-47 |
| Msa0201430 | Msa0282920 | 0.903427 | 3.507788e-79 | -8.615850e-47 |
| Msa0201430 | Msa0282930 | 0.915158 | 8.206398e-85 | -8.615850e-47 |
| Msa0201430 | Msa1040330 | 0.807192 | 5.700115e-50 | -8.615850e-47 |
| Msa0201430 | Msa1191270 | 0.806722 | 7.164267e-50 | -8.615850e-47 |
| Msa0201430 | Msa1259570 | 0.801244 | 9.868036e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0201430 | MtrunA17_Chr2g0303381 | 82.990 | 194 | 13 | 3 | 1 | 176 | 23 | 214 | 1.38e-112 | 322 |
| Msa0201430 | MtrunA17_Chr2g0303401 | 82.990 | 194 | 13 | 3 | 1 | 176 | 23 | 214 | 1.38e-112 | 322 |
| Msa0201430 | MtrunA17_Chr2g0297811 | 51.295 | 193 | 75 | 5 | 1 | 176 | 22 | 212 | 8.52e-45 | 149 |
| Msa0201430 | MtrunA17_Chr2g0297801 | 51.295 | 193 | 75 | 5 | 1 | 176 | 22 | 212 | 8.52e-45 | 149 |
| Msa0201430 | MtrunA17_Chr2g0297791 | 51.295 | 193 | 75 | 5 | 1 | 176 | 22 | 212 | 8.52e-45 | 149 |
| Msa0201430 | MtrunA17_Chr8g0350511 | 43.548 | 186 | 83 | 3 | 5 | 176 | 27 | 204 | 9.46e-43 | 144 |
| Msa0201430 | MtrunA17_Chr8g0350521 | 43.548 | 186 | 83 | 3 | 5 | 176 | 27 | 204 | 9.46e-43 | 144 |
| Msa0201430 | MtrunA17_Chr8g0350541 | 43.548 | 186 | 83 | 3 | 5 | 176 | 27 | 204 | 9.46e-43 | 144 |
| Msa0201430 | MtrunA17_Chr8g0350501 | 43.548 | 186 | 83 | 3 | 5 | 176 | 27 | 204 | 9.46e-43 | 144 |
| Msa0201430 | MtrunA17_Chr2g0297731 | 44.211 | 190 | 78 | 6 | 6 | 176 | 16 | 196 | 6.69e-42 | 142 |
| Msa0201430 | MtrunA17_Chr8g0350531 | 43.548 | 186 | 83 | 3 | 5 | 176 | 291 | 468 | 7.41e-41 | 144 |
| Msa0201430 | MtrunA17_Chr8g0350531 | 43.548 | 186 | 83 | 3 | 5 | 176 | 27 | 204 | 9.28e-41 | 144 |
| Msa0201430 | MtrunA17_Chr2g0297761 | 43.158 | 190 | 77 | 8 | 8 | 176 | 18 | 197 | 1.92e-37 | 130 |
| Msa0201430 | MtrunA17_Chr2g0297771 | 43.158 | 190 | 77 | 8 | 8 | 176 | 18 | 197 | 1.92e-37 | 130 |
| Msa0201430 | MtrunA17_Chr2g0297781 | 43.158 | 190 | 77 | 8 | 8 | 176 | 18 | 197 | 1.92e-37 | 130 |
| Msa0201430 | MtrunA17_Chr8g0350551 | 43.709 | 151 | 65 | 2 | 5 | 143 | 27 | 169 | 1.27e-32 | 117 |
| Msa0201430 | MtrunA17_Chr8g0350441 | 38.503 | 187 | 89 | 6 | 5 | 176 | 26 | 201 | 2.82e-31 | 114 |
| Msa0201430 | MtrunA17_Chr8g0350431 | 38.503 | 187 | 89 | 6 | 5 | 176 | 26 | 201 | 3.49e-31 | 114 |
| Msa0201430 | MtrunA17_Chr8g0350421 | 38.503 | 187 | 89 | 6 | 5 | 176 | 26 | 201 | 3.49e-31 | 114 |
| Msa0201430 | MtrunA17_Chr8g0350411 | 38.503 | 187 | 89 | 6 | 5 | 176 | 26 | 201 | 3.49e-31 | 114 |
| Msa0201430 | MtrunA17_Chr8g0350451 | 38.674 | 181 | 80 | 6 | 11 | 176 | 31 | 195 | 1.96e-26 | 101 |
| Msa0201430 | MtrunA17_Chr8g0350461 | 38.674 | 181 | 80 | 6 | 11 | 176 | 31 | 195 | 1.96e-26 | 101 |
| Msa0201430 | MtrunA17_Chr8g0350471 | 38.674 | 181 | 80 | 6 | 11 | 176 | 31 | 195 | 1.96e-26 | 101 |
| Msa0201430 | MtrunA17_Chr2g0327611 | 30.857 | 175 | 90 | 6 | 20 | 176 | 49 | 210 | 3.45e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2_1:+22896081 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2_1:-22896033 | Msa0201430:CDS |
| CCCACTACCACAAATTGTTT+TGG | 0.245343 | 2_1:-22895567 | Msa0201430:CDS |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2_1:-22895851 | Msa0201430:CDS |
| GGACACATATTCCATGGATT+TGG | 0.302531 | 2_1:+22895615 | None:intergenic |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2_1:+22895813 | None:intergenic |
| CCCAAAACAATTTGTGGTAG+TGG | 0.365132 | 2_1:+22895566 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2_1:-22895772 | Msa0201430:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2_1:-22895975 | Msa0201430:CDS |
| TCATCATTGATGATATTAAC+AGG | 0.403312 | 2_1:+22896060 | None:intergenic |
| ACAATTTGTGGTAGTGGGCT+TGG | 0.408360 | 2_1:+22895572 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2_1:-22895742 | Msa0201430:CDS |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2_1:+22896082 | None:intergenic |
| TGTGGTCCCAAAACAATTTG+TGG | 0.468651 | 2_1:+22895560 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2_1:-22895700 | Msa0201430:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2_1:-22896006 | Msa0201430:CDS |
| CCAAAACAATTTGTGGTAGT+GGG | 0.514829 | 2_1:+22895567 | None:intergenic |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2_1:-22895994 | Msa0201430:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2_1:-22895860 | Msa0201430:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2_1:-22895676 | Msa0201430:CDS |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2_1:+22895666 | None:intergenic |
| ATTTGTGGTAGTGGGCTTGG+AGG | 0.527426 | 2_1:+22895575 | None:intergenic |
| GAGGAGCTCTGTCGGAGCAA+TGG | 0.538177 | 2_1:+22895594 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2_1:-22895895 | Msa0201430:intron |
| TAAGCATGTATCCAAATCCA+TGG | 0.557313 | 2_1:-22895626 | Msa0201430:CDS |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2_1:+22895869 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2_1:-22896000 | Msa0201430:CDS |
| AGCAATGGACACATATTCCA+TGG | 0.567858 | 2_1:+22895609 | None:intergenic |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2_1:-22895699 | Msa0201430:CDS |
| TGGGCTTGGAGGAGCTCTGT+CGG | 0.577415 | 2_1:+22895586 | None:intergenic |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2_1:-22895886 | Msa0201430:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2_1:-22895995 | Msa0201430:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2_1:+22896025 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2_1:+22895770 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2_1:+22896005 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2_1:+22895743 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2_1:-22896019 | Msa0201430:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2_1:-22895892 | Msa0201430:CDS |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2_1:-22895698 | Msa0201430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATGAAATTTTGATT+TGG | + | chr2_1:22897607-22897626 | None:intergenic | 10.0% |
| !! | TTAATTAAAATACCAATAAT+AGG | - | chr2_1:22897983-22898002 | Msa0201430:intron | 10.0% |
| !! | ATTATCTAGTCAATATATTT+AGG | - | chr2_1:22895952-22895971 | Msa0201430:CDS | 15.0% |
| !!! | TTTTGGATTCATATTTTTTT+TGG | - | chr2_1:22896004-22896023 | Msa0201430:CDS | 15.0% |
| !!! | TTTTTACTATACTAAAGAAA+AGG | + | chr2_1:22896727-22896746 | None:intergenic | 15.0% |
| !! | AAAAATTATAATCAATTGGA+AGG | + | chr2_1:22896752-22896771 | None:intergenic | 15.0% |
| !! | AGCAAAAAATTATAATCAAT+TGG | + | chr2_1:22896756-22896775 | None:intergenic | 15.0% |
| !! | TTTGCTAAAAATATATAGAA+TGG | - | chr2_1:22896770-22896789 | Msa0201430:intron | 15.0% |
| !!! | TTTTTATGAGTTTATGTTTT+AGG | + | chr2_1:22897014-22897033 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAACACAATAA+CGG | + | chr2_1:22897143-22897162 | None:intergenic | 15.0% |
| !! | TATAGATAAAAATTTAGAGA+CGG | + | chr2_1:22897179-22897198 | None:intergenic | 15.0% |
| !! | TTATTTGTATTCAAAATTGA+GGG | + | chr2_1:22897264-22897283 | None:intergenic | 15.0% |
| !!! | TTACACTTTTTAAATGATAA+AGG | + | chr2_1:22897389-22897408 | None:intergenic | 15.0% |
| !! | TAACGTTTGAAAATTATTAA+CGG | + | chr2_1:22897635-22897654 | None:intergenic | 15.0% |
| !! | ATTCTATTAAATCAAGTATT+TGG | + | chr2_1:22897947-22897966 | None:intergenic | 15.0% |
| !! | TTTAATAATAGTTGTGATGA+TGG | - | chr2_1:22895639-22895658 | Msa0201430:intron | 20.0% |
| !!! | AACTTTTTATGTTCACATTA+TGG | + | chr2_1:22895866-22895885 | None:intergenic | 20.0% |
| !! | CATAAAAAGTTCTTAATGAA+AGG | - | chr2_1:22895875-22895894 | Msa0201430:CDS | 20.0% |
| !! | AAATTACAAGTTCCATAAAA+AGG | - | chr2_1:22896344-22896363 | Msa0201430:intron | 20.0% |
| !! | TTATTTAAGAAAGAAAGTAG+AGG | - | chr2_1:22896484-22896503 | Msa0201430:intron | 20.0% |
| !! | TGTCAAATAATGTTCTTTAT+TGG | + | chr2_1:22896607-22896626 | None:intergenic | 20.0% |
| !! | ATAATTCTAAATTGGAAATG+GGG | + | chr2_1:22896806-22896825 | None:intergenic | 20.0% |
| !! | CATAATTCTAAATTGGAAAT+GGG | + | chr2_1:22896807-22896826 | None:intergenic | 20.0% |
| !! | ACATAATTCTAAATTGGAAA+TGG | + | chr2_1:22896808-22896827 | None:intergenic | 20.0% |
| !!! | AATATGTCATTTCTAAAATC+AGG | - | chr2_1:22897077-22897096 | Msa0201430:intron | 20.0% |
| !! | GTTATTTGTATTCAAAATTG+AGG | + | chr2_1:22897265-22897284 | None:intergenic | 20.0% |
| !! | TTATAGAAAAGGTTGTTTAA+GGG | + | chr2_1:22897462-22897481 | None:intergenic | 20.0% |
| !! | ATTATAGAAAAGGTTGTTTA+AGG | + | chr2_1:22897463-22897482 | None:intergenic | 20.0% |
| !! | AACGATCTTTATTATAGAAA+AGG | + | chr2_1:22897473-22897492 | None:intergenic | 20.0% |
| !!! | AATTTTTATTAGGAACACTA+GGG | + | chr2_1:22898023-22898042 | None:intergenic | 20.0% |
| !!! | TAATTTTTATTAGGAACACT+AGG | + | chr2_1:22898024-22898043 | None:intergenic | 20.0% |
| !!! | ACTTATTAATTGATTTTCGT+TGG | + | chr2_1:22898179-22898198 | None:intergenic | 20.0% |
| !! | GAAAATGAAAATATGGAAAA+TGG | + | chr2_1:22898232-22898251 | None:intergenic | 20.0% |
| ! | TGTTTGAGGAAAAAAAAGAT+TGG | + | chr2_1:22895750-22895769 | None:intergenic | 25.0% |
| ! | AACAAAATGTCAATCTACTT+AGG | - | chr2_1:22896319-22896338 | Msa0201430:intron | 25.0% |
| !! | GAGTCAATTATACCTTTTTA+TGG | + | chr2_1:22896359-22896378 | None:intergenic | 25.0% |
| !! | AATGCATTGATCATTTCTTT+AGG | + | chr2_1:22896415-22896434 | None:intergenic | 25.0% |
| ! | AATGATCAATGCATTTGAAA+AGG | - | chr2_1:22896420-22896439 | Msa0201430:intron | 25.0% |
| ! | CGCATAACATAATTCTAAAT+TGG | + | chr2_1:22896814-22896833 | None:intergenic | 25.0% |
| ! | TACTCATTATATTCACACTA+TGG | + | chr2_1:22896868-22896887 | None:intergenic | 25.0% |
| !!! | TTCAAAATTGAGGGTATTTT+TGG | + | chr2_1:22897255-22897274 | None:intergenic | 25.0% |
| ! | TCTATAATAAAGATCGTTGT+TGG | - | chr2_1:22897475-22897494 | Msa0201430:intron | 25.0% |
| ! | TAATAAAAAAAGCGGAAAGA+CGG | - | chr2_1:22897658-22897677 | Msa0201430:intron | 25.0% |
| ! | TTAAATCAAGTATTTGGTCA+TGG | + | chr2_1:22897941-22897960 | None:intergenic | 25.0% |
| !! | ATTTTTATTAGGAACACTAG+GGG | + | chr2_1:22898022-22898041 | None:intergenic | 25.0% |
| ! | GATTATTAAATTGAGTTTGC+AGG | - | chr2_1:22898098-22898117 | Msa0201430:intron | 25.0% |
| !!! | ATTAATTGATTTTCGTTGGT+GGG | + | chr2_1:22898175-22898194 | None:intergenic | 25.0% |
| !!! | TATTAATTGATTTTCGTTGG+TGG | + | chr2_1:22898176-22898195 | None:intergenic | 25.0% |
| ! | TGTGATCGAAAATGAAAATA+TGG | + | chr2_1:22898239-22898258 | None:intergenic | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_1:22898301-22898320 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_1:22898301-22898320 | Msa0201430:intron | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_1:22898339-22898358 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | + | chr2_1:22898361-22898380 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_1:22898507-22898526 | Msa0201430:intron | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_1:22898523-22898542 | Msa0201430:intron | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_1:22898558-22898577 | Msa0201430:intron | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_1:22898768-22898787 | Msa0201430:intron | 25.0% |
| ! | AACTTTTTATGTGCACATCA+TGG | + | chr2_1:22895774-22895793 | None:intergenic | 30.0% |
| TGTTCACATTATGGTTGTTA+GGG | + | chr2_1:22895857-22895876 | None:intergenic | 30.0% | |
| ATGTTCACATTATGGTTGTT+AGG | + | chr2_1:22895858-22895877 | None:intergenic | 30.0% | |
| ! | ATTCAGTTTTCTCTAGTTGT+GGG | - | chr2_1:22895975-22895994 | Msa0201430:CDS | 30.0% |
| TTCTACTTTATCTTCAGTTG+TGG | - | chr2_1:22896130-22896149 | Msa0201430:intron | 30.0% | |
| GAAAGAGATACAAAAAGTTG+GGG | + | chr2_1:22896266-22896285 | None:intergenic | 30.0% | |
| CGAAAGAGATACAAAAAGTT+GGG | + | chr2_1:22896267-22896286 | None:intergenic | 30.0% | |
| ACGAAAGAGATACAAAAAGT+TGG | + | chr2_1:22896268-22896287 | None:intergenic | 30.0% | |
| TACCAAACAATTCATGACAA+GGG | + | chr2_1:22896568-22896587 | None:intergenic | 30.0% | |
| TTCTTTATTGGAAACGAACT+CGG | + | chr2_1:22896595-22896614 | None:intergenic | 30.0% | |
| ! | AATCTACGAAATCTAGAGTT+CGG | + | chr2_1:22896650-22896669 | None:intergenic | 30.0% |
| TCATTTCCCCATATAATTGA+AGG | - | chr2_1:22896669-22896688 | Msa0201430:intron | 30.0% | |
| CATTTCCCCATATAATTGAA+GGG | - | chr2_1:22896670-22896689 | Msa0201430:intron | 30.0% | |
| TGTTGACCCTTCAATTATAT+GGG | + | chr2_1:22896679-22896698 | None:intergenic | 30.0% | |
| GTTACGGGAATTAGATATTA+TGG | + | chr2_1:22896843-22896862 | None:intergenic | 30.0% | |
| TATTCACACTATGGTTGTTA+CGG | + | chr2_1:22896859-22896878 | None:intergenic | 30.0% | |
| ! | ACAACCCCTTTCAAAAATTT+TGG | - | chr2_1:22897214-22897233 | Msa0201430:intron | 30.0% |
| ! | CAACCCCTTTCAAAAATTTT+GGG | - | chr2_1:22897215-22897234 | Msa0201430:intron | 30.0% |
| !! | TCAGCCCAAAATTTTTGAAA+GGG | + | chr2_1:22897222-22897241 | None:intergenic | 30.0% |
| ! | GTTGTTTAAGGGTATAATTG+GGG | + | chr2_1:22897451-22897470 | None:intergenic | 30.0% |
| ! | GGTTGTTTAAGGGTATAATT+GGG | + | chr2_1:22897452-22897471 | None:intergenic | 30.0% |
| ! | AGGTTGTTTAAGGGTATAAT+TGG | + | chr2_1:22897453-22897472 | None:intergenic | 30.0% |
| CGTTAGCGTAATAAAAAAAG+CGG | - | chr2_1:22897650-22897669 | Msa0201430:intron | 30.0% | |
| ATAAATACTAGCGAAAAGAC+AGG | + | chr2_1:22897686-22897705 | None:intergenic | 30.0% | |
| TGTCTTTGTATGCCTATTAT+TGG | + | chr2_1:22897998-22898017 | None:intergenic | 30.0% | |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_1:22898290-22898309 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_1:22898340-22898359 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_1:22898385-22898404 | Msa0201430:intron | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_1:22898423-22898442 | Msa0201430:intron | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_1:22898424-22898443 | Msa0201430:intron | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_1:22898486-22898505 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_1:22898487-22898506 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_1:22898568-22898587 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_1:22898567-22898586 | Msa0201430:intron | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_1:22898879-22898898 | None:intergenic | 30.0% |
| !! | GTTGTGATGATGGTTTAAAG+TGG | - | chr2_1:22895649-22895668 | Msa0201430:intron | 35.0% |
| !! | ATAATAAAGCCAAGAGCACT+TGG | - | chr2_1:22895712-22895731 | Msa0201430:CDS | 35.0% |
| ! | GATTCAGTTTTCTCTAGTTG+TGG | - | chr2_1:22895974-22895993 | Msa0201430:CDS | 35.0% |
| AGGATACAACAAGAATGGAA+CGG | + | chr2_1:22896081-22896100 | None:intergenic | 35.0% | |
| ! | TCCATTCTTGTTGTATCCTT+TGG | - | chr2_1:22896082-22896101 | Msa0201430:CDS | 35.0% |
| ! | CCATTCTTGTTGTATCCTTT+GGG | - | chr2_1:22896083-22896102 | Msa0201430:CDS | 35.0% |
| ACCAAACAATTCATGACAAG+GGG | + | chr2_1:22896567-22896586 | None:intergenic | 35.0% | |
| GTACCAAACAATTCATGACA+AGG | + | chr2_1:22896569-22896588 | None:intergenic | 35.0% | |
| GTTGACCCTTCAATTATATG+GGG | + | chr2_1:22896678-22896697 | None:intergenic | 35.0% | |
| ! | GTGTTGACCCTTCAATTATA+TGG | + | chr2_1:22896680-22896699 | None:intergenic | 35.0% |
| ATTCACACTATGGTTGTTAC+GGG | + | chr2_1:22896858-22896877 | None:intergenic | 35.0% | |
| !! | CAGCCCAAAATTTTTGAAAG+GGG | + | chr2_1:22897221-22897240 | None:intergenic | 35.0% |
| ! | GTCAGCCCAAAATTTTTGAA+AGG | + | chr2_1:22897223-22897242 | None:intergenic | 35.0% |
| TAAATCTCACATACGAGTAG+AGG | + | chr2_1:22897799-22897818 | None:intergenic | 35.0% | |
| ACTCGTATGTGAGATTTAAG+TGG | - | chr2_1:22897801-22897820 | Msa0201430:intron | 35.0% | |
| GAGTTTGCAGGCTTATAAAA+AGG | - | chr2_1:22898110-22898129 | Msa0201430:intron | 35.0% | |
| ! | AAAAAGGCATACCAAGAGTT+TGG | - | chr2_1:22898126-22898145 | Msa0201430:intron | 35.0% |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_1:22898275-22898294 | Msa0201430:intron | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_1:22898418-22898437 | Msa0201430:intron | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_1:22898526-22898545 | Msa0201430:intron | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_1:22898552-22898571 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_1:22898572-22898591 | Msa0201430:intron | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_1:22898577-22898596 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_1:22898646-22898665 | Msa0201430:intron | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_1:22898651-22898670 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_1:22898718-22898737 | Msa0201430:intron | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_1:22898719-22898738 | Msa0201430:intron | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_1:22898755-22898774 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_1:22898792-22898811 | Msa0201430:intron | 35.0% | |
| CCAAAACAATTTGTGGTAGT+GGG | + | chr2_1:22898854-22898873 | None:intergenic | 35.0% | |
| ! | CCACTACCACAAATTGTTTT+GGG | - | chr2_1:22898852-22898871 | Msa0201430:intron | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_1:22898864-22898883 | Msa0201430:intron | 35.0% |
| !! | GCTCTTGGCTTTATTATCAC+CGG | + | chr2_1:22895709-22895728 | None:intergenic | 40.0% |
| CCCAAAGGATACAACAAGAA+TGG | + | chr2_1:22896086-22896105 | None:intergenic | 40.0% | |
| ! | TTCAGTTGTGGTAACTTGTC+TGG | - | chr2_1:22896142-22896161 | Msa0201430:intron | 40.0% |
| CACGATATACTCCATTTGAG+TGG | - | chr2_1:22896219-22896238 | Msa0201430:intron | 40.0% | |
| TCCCCTTGTCATGAATTGTT+TGG | - | chr2_1:22896563-22896582 | Msa0201430:intron | 40.0% | |
| GTGTTGGAATTCCAAACTCT+TGG | + | chr2_1:22898140-22898159 | None:intergenic | 40.0% | |
| !! | TGGGTTTGATTGGTTTGTGT+TGG | + | chr2_1:22898156-22898175 | None:intergenic | 40.0% |
| !!! | TTTTCGTTGGTGGGTTTGAT+TGG | + | chr2_1:22898166-22898185 | None:intergenic | 40.0% |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_1:22898416-22898435 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_1:22898608-22898627 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_1:22898678-22898697 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_1:22898676-22898695 | Msa0201430:intron | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_1:22898720-22898739 | Msa0201430:intron | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_1:22898806-22898825 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_1:22898812-22898831 | None:intergenic | 40.0% | |
| ! | CCCACTACCACAAATTGTTT+TGG | - | chr2_1:22898851-22898870 | Msa0201430:intron | 40.0% |
| CCCAAAACAATTTGTGGTAG+TGG | + | chr2_1:22898855-22898874 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_1:22898861-22898880 | None:intergenic | 40.0% | |
| AAGTGGTGTTTCCTAGAGCT+AGG | - | chr2_1:22895666-22895685 | Msa0201430:intron | 45.0% | |
| AGTGGTGTTTCCTAGAGCTA+GGG | - | chr2_1:22895667-22895686 | Msa0201430:intron | 45.0% | |
| GGGGCTGATGACTTAAAATC+CGG | - | chr2_1:22895687-22895706 | Msa0201430:CDS | 45.0% | |
| GTGCACATCATGGTTGTTTG+AGG | + | chr2_1:22895764-22895783 | None:intergenic | 45.0% | |
| ! | CTAGTTGTGGGTCGTGATTT+TGG | - | chr2_1:22895987-22896006 | Msa0201430:CDS | 45.0% |
| ATATGCCGATCTTTCCGCAA+CGG | - | chr2_1:22896029-22896048 | Msa0201430:CDS | 45.0% | |
| ! | TCTTGTTGTATCCTTTGGGC+CGG | - | chr2_1:22896087-22896106 | Msa0201430:CDS | 45.0% |
| CAAAACCAACCCAAACTCTC+CGG | + | chr2_1:22896109-22896128 | None:intergenic | 45.0% | |
| ACTCCATTTGAGTGGTACCA+TGG | - | chr2_1:22896227-22896246 | Msa0201430:intron | 45.0% | |
| CTCCATTTGAGTGGTACCAT+GGG | - | chr2_1:22896228-22896247 | Msa0201430:intron | 45.0% | |
| ATTTGAGTGGTACCATGGGT+CGG | - | chr2_1:22896232-22896251 | Msa0201430:intron | 45.0% | |
| ! | AAATCTAGAGTTCGGCTGCA+AGG | + | chr2_1:22896642-22896661 | None:intergenic | 45.0% |
| TTCGCGAGCTATCAACTCAA+AGG | + | chr2_1:22897053-22897072 | None:intergenic | 45.0% | |
| !! | TGAGTTGATAGCTCGCGAAT+AGG | - | chr2_1:22897054-22897073 | Msa0201430:intron | 45.0% |
| ACATACGAGTAGAGGAGATG+AGG | + | chr2_1:22897791-22897810 | None:intergenic | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_1:22898309-22898328 | Msa0201430:intron | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_1:22898412-22898431 | Msa0201430:intron | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_1:22898532-22898551 | Msa0201430:intron | 45.0% | |
| !! | ACAATTTGTGGTAGTGGGCT+TGG | + | chr2_1:22898849-22898868 | None:intergenic | 45.0% |
| !!! | CTTTTTTTTTAATTTTTATT+AGG | + | chr2_1:22898033-22898052 | None:intergenic | 5.0% |
| GTGGTGTTTCCTAGAGCTAG+GGG | - | chr2_1:22895668-22895687 | Msa0201430:intron | 50.0% | |
| CCATCTCATCCAAGTGCTCT+TGG | + | chr2_1:22895724-22895743 | None:intergenic | 50.0% | |
| !! | CCAAGAGCACTTGGATGAGA+TGG | - | chr2_1:22895721-22895740 | Msa0201430:CDS | 50.0% |
| AACCACCGTTGCGGAAAGAT+CGG | + | chr2_1:22896037-22896056 | None:intergenic | 50.0% | |
| GACCCATGGTACCACTCAAA+TGG | + | chr2_1:22896233-22896252 | None:intergenic | 50.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_1:22898396-22898415 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_1:22898742-22898761 | Msa0201430:intron | 50.0% |
| !! | ATTTGTGGTAGTGGGCTTGG+AGG | + | chr2_1:22898846-22898865 | None:intergenic | 50.0% |
| ! | AGTCATCAGCCCCTAGCTCT+AGG | + | chr2_1:22895680-22895699 | None:intergenic | 55.0% |
| ATGAAGCGCAACCACCGTTG+CGG | + | chr2_1:22896046-22896065 | None:intergenic | 55.0% | |
| ATCCTTTGGGCCGGAGAGTT+TGG | - | chr2_1:22896096-22896115 | Msa0201430:intron | 55.0% | |
| TCCTTTGGGCCGGAGAGTTT+GGG | - | chr2_1:22896097-22896116 | Msa0201430:intron | 55.0% | |
| ! | GGGGTATTAGATCCGACCCA+TGG | + | chr2_1:22896247-22896266 | None:intergenic | 55.0% |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_1:22898399-22898418 | Msa0201430:intron | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_1:22898443-22898462 | Msa0201430:intron | 55.0% | |
| TGCCGATCTTTCCGCAACGG+TGG | - | chr2_1:22896032-22896051 | Msa0201430:CDS | 60.0% | |
| GCAACGGTGGTTGCGCTTCA+TGG | - | chr2_1:22896045-22896064 | Msa0201430:CDS | 60.0% | |
| GGTTGCGCTTCATGGTCTGC+AGG | - | chr2_1:22896053-22896072 | Msa0201430:CDS | 60.0% | |
| ACCCAAACTCTCCGGCCCAA+AGG | + | chr2_1:22896101-22896120 | None:intergenic | 60.0% | |
| TTGGGCCGGAGAGTTTGGGT+TGG | - | chr2_1:22896101-22896120 | Msa0201430:intron | 60.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_1:22898827-22898846 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_1:22898835-22898854 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 22895534 | 22898906 | 22895534 | ID=Msa0201430;Name=Msa0201430 |
| chr2_1 | mRNA | 22895534 | 22898906 | 22895534 | ID=Msa0201430-mRNA-1;Parent=Msa0201430;Name=Msa0201430-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|0.75|0|0|4|0|176 |
| chr2_1 | exon | 22898901 | 22898906 | 22898901 | ID=Msa0201430-mRNA-1:exon:8987;Parent=Msa0201430-mRNA-1 |
| chr2_1 | exon | 22895948 | 22896109 | 22895948 | ID=Msa0201430-mRNA-1:exon:8986;Parent=Msa0201430-mRNA-1 |
| chr2_1 | exon | 22895672 | 22895911 | 22895672 | ID=Msa0201430-mRNA-1:exon:8985;Parent=Msa0201430-mRNA-1 |
| chr2_1 | exon | 22895534 | 22895653 | 22895534 | ID=Msa0201430-mRNA-1:exon:8984;Parent=Msa0201430-mRNA-1 |
| chr2_1 | CDS | 22898901 | 22898906 | 22898901 | ID=Msa0201430-mRNA-1:cds;Parent=Msa0201430-mRNA-1 |
| chr2_1 | CDS | 22895948 | 22896109 | 22895948 | ID=Msa0201430-mRNA-1:cds;Parent=Msa0201430-mRNA-1 |
| chr2_1 | CDS | 22895672 | 22895911 | 22895672 | ID=Msa0201430-mRNA-1:cds;Parent=Msa0201430-mRNA-1 |
| chr2_1 | CDS | 22895534 | 22895653 | 22895534 | ID=Msa0201430-mRNA-1:cds;Parent=Msa0201430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
