Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244030 | XP_013441887.1 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244030 | sp|Q7M443|CHIT2_TULSB | 33.660 | 306 | 162 | 12 | 15 | 310 | 1 | 275 | 4.37e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244030 | A0A072TEX8 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107830 | Msa0244030 | 0.812519 | 4.069618e-51 | -8.615850e-47 |
| Msa0129290 | Msa0244030 | 0.805854 | 1.092002e-49 | -8.615850e-47 |
| Msa0143950 | Msa0244030 | 0.817181 | 3.767975e-52 | -8.615850e-47 |
| Msa0200090 | Msa0244030 | 0.809130 | 2.203078e-50 | -8.615850e-47 |
| Msa0201430 | Msa0244030 | 0.893284 | 7.253461e-75 | -8.615850e-47 |
| Msa0201440 | Msa0244030 | 0.930070 | 2.793132e-93 | -8.615850e-47 |
| Msa0201450 | Msa0244030 | 0.903787 | 2.417859e-79 | -8.615850e-47 |
| Msa0201460 | Msa0244030 | 0.893503 | 5.917287e-75 | -8.615850e-47 |
| Msa0201470 | Msa0244030 | 0.865362 | 6.241588e-65 | -8.615850e-47 |
| Msa0244020 | Msa0244030 | 0.947651 | 4.444629e-106 | -8.615850e-47 |
| Msa0244030 | Msa0244040 | 0.949358 | 1.495502e-107 | -8.615850e-47 |
| Msa0244030 | Msa0244050 | 0.853962 | 1.688575e-61 | -8.615850e-47 |
| Msa0244030 | Msa0244060 | 0.950111 | 3.231582e-108 | -8.615850e-47 |
| Msa0244030 | Msa0244070 | 0.956527 | 2.390804e-114 | -8.615850e-47 |
| Msa0244030 | Msa0244080 | 0.923764 | 1.726559e-89 | -8.615850e-47 |
| Msa0244030 | Msa0271700 | 0.809681 | 1.678187e-50 | -8.615850e-47 |
| Msa0244030 | Msa0275730 | 0.804167 | 2.459875e-49 | -8.615850e-47 |
| Msa0244030 | Msa0282910 | 0.915856 | 3.579166e-85 | -8.615850e-47 |
| Msa0244030 | Msa0282920 | 0.942255 | 9.932137e-102 | -8.615850e-47 |
| Msa0244030 | Msa0282930 | 0.854292 | 1.356511e-61 | -8.615850e-47 |
| Msa0244030 | Msa0336550 | -0.800525 | 1.383837e-48 | -8.615850e-47 |
| Msa0244030 | Msa0390200 | 0.807870 | 4.091183e-50 | -8.615850e-47 |
| Msa0244030 | Msa0433090 | 0.800084 | 1.701516e-48 | -8.615850e-47 |
| Msa0244030 | Msa0485290 | 0.806693 | 7.268102e-50 | -8.615850e-47 |
| Msa0244030 | Msa0489370 | 0.814694 | 1.352261e-51 | -8.615850e-47 |
| Msa0244030 | Msa0524710 | 0.815165 | 1.063146e-51 | -8.615850e-47 |
| Msa0244030 | Msa0554660 | 0.805257 | 1.456388e-49 | -8.615850e-47 |
| Msa0244030 | Msa0561830 | 0.824802 | 6.625476e-54 | -8.615850e-47 |
| Msa0244030 | Msa0597800 | 0.800722 | 1.261509e-48 | -8.615850e-47 |
| Msa0244030 | Msa0597820 | 0.815107 | 1.095203e-51 | -8.615850e-47 |
| Msa0244030 | Msa0614960 | 0.810925 | 9.043170e-51 | -8.615850e-47 |
| Msa0244030 | Msa0622800 | -0.800171 | 1.632969e-48 | -8.615850e-47 |
| Msa0244030 | Msa0629030 | 0.800830 | 1.199076e-48 | -8.615850e-47 |
| Msa0244030 | Msa0651820 | 0.807568 | 4.744273e-50 | -8.615850e-47 |
| Msa0244030 | Msa0655370 | 0.827131 | 1.853232e-54 | -8.615850e-47 |
| Msa0244030 | Msa0666580 | 0.802489 | 5.476902e-49 | -8.615850e-47 |
| Msa0244030 | Msa0699170 | 0.821021 | 5.038150e-53 | -8.615850e-47 |
| Msa0244030 | Msa0715250 | 0.805209 | 1.490650e-49 | -8.615850e-47 |
| Msa0244030 | Msa0728520 | 0.820859 | 5.490174e-53 | -8.615850e-47 |
| Msa0244030 | Msa0776540 | 0.822338 | 2.499071e-53 | -8.615850e-47 |
| Msa0244030 | Msa0838560 | 0.806798 | 6.904563e-50 | -8.615850e-47 |
| Msa0244030 | Msa0846870 | 0.807591 | 4.689824e-50 | -8.615850e-47 |
| Msa0244030 | Msa0847140 | 0.805375 | 1.376202e-49 | -8.615850e-47 |
| Msa0244030 | Msa0854380 | 0.800178 | 1.627937e-48 | -8.615850e-47 |
| Msa0244030 | Msa0886370 | 0.810411 | 1.168278e-50 | -8.615850e-47 |
| Msa0244030 | Msa0896920 | 0.800121 | 1.672412e-48 | -8.615850e-47 |
| Msa0244030 | Msa0910590 | 0.816069 | 6.685537e-52 | -8.615850e-47 |
| Msa0244030 | Msa0913500 | 0.809380 | 1.947187e-50 | -8.615850e-47 |
| Msa0244030 | Msa0948430 | 0.811084 | 8.356675e-51 | -8.615850e-47 |
| Msa0244030 | Msa0974410 | -0.806715 | 7.190510e-50 | -8.615850e-47 |
| Msa0244030 | Msa0985380 | 0.801885 | 7.291164e-49 | -8.615850e-47 |
| Msa0244030 | Msa1035050 | 0.811755 | 5.972702e-51 | -8.615850e-47 |
| Msa0244030 | Msa1040330 | 0.826863 | 2.148280e-54 | -8.615850e-47 |
| Msa0244030 | Msa1085820 | 0.811416 | 7.076786e-51 | -8.615850e-47 |
| Msa0244030 | Msa1121080 | 0.809503 | 1.832700e-50 | -8.615850e-47 |
| Msa0244030 | Msa1127940 | 0.816176 | 6.329759e-52 | -8.615850e-47 |
| Msa0244030 | Msa1156670 | 0.816443 | 5.516949e-52 | -8.615850e-47 |
| Msa0244030 | Msa1165860 | 0.822471 | 2.327530e-53 | -8.615850e-47 |
| Msa0244030 | Msa1191270 | 0.815793 | 7.707261e-52 | -8.615850e-47 |
| Msa0244030 | Msa1206330 | 0.800638 | 1.312057e-48 | -8.615850e-47 |
| Msa0244030 | Msa1265940 | 0.801356 | 9.360164e-49 | -8.615850e-47 |
| Msa0244030 | Msa1431020 | 0.805639 | 1.211099e-49 | -8.615850e-47 |
| Msa0244030 | Msa1437590 | 0.814760 | 1.307651e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244030 | MtrunA17_Chr2g0303381 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 566 |
| Msa0244030 | MtrunA17_Chr2g0303401 | 87.500 | 312 | 36 | 2 | 1 | 311 | 1 | 310 | 0.0 | 566 |
| Msa0244030 | MtrunA17_Chr2g0297811 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 6.17e-112 | 326 |
| Msa0244030 | MtrunA17_Chr2g0297801 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 6.17e-112 | 326 |
| Msa0244030 | MtrunA17_Chr2g0297791 | 58.333 | 312 | 121 | 6 | 4 | 311 | 3 | 309 | 6.17e-112 | 326 |
| Msa0244030 | MtrunA17_Chr2g0297731 | 47.883 | 307 | 137 | 7 | 14 | 308 | 2 | 297 | 6.90e-91 | 273 |
| Msa0244030 | MtrunA17_Chr8g0350511 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 7.61e-91 | 272 |
| Msa0244030 | MtrunA17_Chr8g0350521 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 7.61e-91 | 272 |
| Msa0244030 | MtrunA17_Chr8g0350541 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 7.61e-91 | 272 |
| Msa0244030 | MtrunA17_Chr8g0350501 | 48.675 | 302 | 138 | 4 | 12 | 310 | 12 | 299 | 7.61e-91 | 272 |
| Msa0244030 | MtrunA17_Chr8g0350531 | 48.675 | 302 | 138 | 4 | 12 | 310 | 276 | 563 | 1.72e-87 | 272 |
| Msa0244030 | MtrunA17_Chr8g0350531 | 46.488 | 299 | 129 | 5 | 12 | 304 | 12 | 285 | 9.63e-77 | 244 |
| Msa0244030 | MtrunA17_Chr8g0350551 | 45.695 | 302 | 133 | 4 | 12 | 310 | 12 | 285 | 4.97e-81 | 247 |
| Msa0244030 | MtrunA17_Chr2g0297761 | 47.213 | 305 | 136 | 10 | 16 | 308 | 4 | 295 | 1.39e-79 | 244 |
| Msa0244030 | MtrunA17_Chr2g0297771 | 47.213 | 305 | 136 | 10 | 16 | 308 | 4 | 295 | 1.39e-79 | 244 |
| Msa0244030 | MtrunA17_Chr2g0297781 | 47.213 | 305 | 136 | 10 | 16 | 308 | 4 | 295 | 1.39e-79 | 244 |
| Msa0244030 | MtrunA17_Chr8g0350441 | 43.289 | 298 | 148 | 7 | 14 | 309 | 13 | 291 | 1.23e-74 | 231 |
| Msa0244030 | MtrunA17_Chr8g0350431 | 43.537 | 294 | 145 | 7 | 14 | 305 | 13 | 287 | 7.33e-72 | 224 |
| Msa0244030 | MtrunA17_Chr8g0350421 | 43.537 | 294 | 145 | 7 | 14 | 305 | 13 | 287 | 7.33e-72 | 224 |
| Msa0244030 | MtrunA17_Chr8g0350411 | 43.537 | 294 | 145 | 7 | 14 | 305 | 13 | 287 | 7.33e-72 | 224 |
| Msa0244030 | MtrunA17_Chr8g0350451 | 42.295 | 305 | 139 | 9 | 9 | 311 | 9 | 278 | 2.80e-62 | 199 |
| Msa0244030 | MtrunA17_Chr8g0350461 | 42.295 | 305 | 139 | 9 | 9 | 311 | 9 | 278 | 2.80e-62 | 199 |
| Msa0244030 | MtrunA17_Chr8g0350471 | 42.295 | 305 | 139 | 9 | 9 | 311 | 9 | 278 | 2.80e-62 | 199 |
| Msa0244030 | MtrunA17_Chr6g0481561 | 31.317 | 281 | 158 | 9 | 16 | 287 | 34 | 288 | 1.12e-31 | 120 |
| Msa0244030 | MtrunA17_Chr2g0327601 | 32.270 | 282 | 154 | 10 | 16 | 287 | 31 | 285 | 2.58e-29 | 113 |
| Msa0244030 | MtrunA17_Chr2g0327611 | 31.273 | 275 | 154 | 11 | 15 | 279 | 28 | 277 | 4.75e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2_2:+21953251 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2_2:-21953203 | Msa0244030:CDS |
| CCCACTACCACAAATTGTTT+TGG | 0.245343 | 2_2:-21952737 | Msa0244030:CDS |
| TGTAGCTAGTAATCAATTAT+TGG | 0.249179 | 2_2:+21952404 | None:intergenic |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2_2:-21953021 | Msa0244030:CDS |
| GGACACATATTCCATGGATT+TGG | 0.302531 | 2_2:+21952785 | None:intergenic |
| TTACGGTGAGCTTAAACTTT+TGG | 0.347612 | 2_2:-21952613 | Msa0244030:CDS |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2_2:+21952983 | None:intergenic |
| CCCAAAACAATTTGTGGTAG+TGG | 0.365132 | 2_2:+21952736 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2_2:-21952942 | Msa0244030:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2_2:-21953145 | Msa0244030:CDS |
| ACAATTTGTGGTAGTGGGCT+TGG | 0.408360 | 2_2:+21952742 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2_2:-21952912 | Msa0244030:CDS |
| AATCAACTAATAACGGATTA+CGG | 0.451454 | 2_2:-21952630 | Msa0244030:CDS |
| ATCATCAAACTCATCCTTTG+AGG | 0.453286 | 2_2:+21952659 | None:intergenic |
| CGGTTCATCTTAGTATCAGC+TGG | 0.454457 | 2_2:+21952573 | None:intergenic |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2_2:+21953252 | None:intergenic |
| TCATCATTGATGATCTCAAC+AGG | 0.457912 | 2_2:+21953230 | None:intergenic |
| AGCATTTCCTCCAAGATGTA+AGG | 0.467593 | 2_2:+21952441 | None:intergenic |
| TGTGGTCCCAAAACAATTTG+TGG | 0.468651 | 2_2:+21952730 | None:intergenic |
| GATGTCATTGCTCGGTGGGT+TGG | 0.481116 | 2_2:+21952467 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2_2:-21952870 | Msa0244030:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2_2:-21953176 | Msa0244030:CDS |
| AACCGAGAGGTGTTCATTGA+GGG | 0.499384 | 2_2:-21952555 | Msa0244030:CDS |
| CGCCCTCAATGAACACCTCT+CGG | 0.504404 | 2_2:+21952553 | None:intergenic |
| TGACATCGAGCCTTACATCT+TGG | 0.507062 | 2_2:-21952451 | Msa0244030:CDS |
| TCTCTACAATCAACTAATAA+CGG | 0.510522 | 2_2:-21952637 | Msa0244030:CDS |
| CCAAAACAATTTGTGGTAGT+GGG | 0.514829 | 2_2:+21952737 | None:intergenic |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2_2:-21953164 | Msa0244030:CDS |
| CTAGTAATCAATTATTGGTA+AGG | 0.518596 | 2_2:+21952409 | None:intergenic |
| ATCAACAGCAAATCACTCCT+TGG | 0.519679 | 2_2:-21952519 | Msa0244030:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2_2:-21953030 | Msa0244030:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2_2:-21952846 | Msa0244030:CDS |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2_2:+21952836 | None:intergenic |
| ATTTGTGGTAGTGGGCTTGG+AGG | 0.527426 | 2_2:+21952745 | None:intergenic |
| GCTCGATGTCATTGCTCGGT+GGG | 0.532171 | 2_2:+21952463 | None:intergenic |
| GAGGAGCTCTGTCGGAGCAA+TGG | 0.538177 | 2_2:+21952764 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2_2:-21953065 | Msa0244030:CDS |
| CATCGAGCCTTACATCTTGG+AGG | 0.554478 | 2_2:-21952448 | Msa0244030:CDS |
| TCGAGAATACATTGGCGTGA+AGG | 0.556428 | 2_2:-21953279 | Msa0244030:CDS |
| GAAAGAACATAAGAATATGA+AGG | 0.556511 | 2_2:-21953081 | Msa0244030:CDS |
| TAAGCATGTATCCAAATCCA+TGG | 0.557313 | 2_2:-21952796 | Msa0244030:CDS |
| CATCTTAGTATCAGCTGGAT+CGG | 0.557541 | 2_2:+21952578 | None:intergenic |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2_2:+21953039 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2_2:-21953170 | Msa0244030:CDS |
| GAACCGAGAGGTGTTCATTG+AGG | 0.566347 | 2_2:-21952556 | Msa0244030:CDS |
| CAATCAAACTATATCCTCAA+AGG | 0.567378 | 2_2:-21952673 | Msa0244030:CDS |
| AGCAATGGACACATATTCCA+TGG | 0.567858 | 2_2:+21952779 | None:intergenic |
| GGCTCGATGTCATTGCTCGG+TGG | 0.574776 | 2_2:+21952462 | None:intergenic |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2_2:-21952869 | Msa0244030:CDS |
| TGGGCTTGGAGGAGCTCTGT+CGG | 0.577415 | 2_2:+21952756 | None:intergenic |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2_2:-21953056 | Msa0244030:CDS |
| TAAGGCTCGATGTCATTGCT+CGG | 0.600452 | 2_2:+21952459 | None:intergenic |
| AGTTATTAAACATCTCAAGA+AGG | 0.601516 | 2_2:-21952820 | Msa0244030:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2_2:-21953165 | Msa0244030:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2_2:+21953195 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2_2:+21952940 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2_2:+21953175 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2_2:+21952913 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2_2:-21953189 | Msa0244030:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2_2:-21953062 | Msa0244030:CDS |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2_2:-21952868 | Msa0244030:CDS |
| TGATACTAAGATGAACCGAG+AGG | 0.777827 | 2_2:-21952568 | Msa0244030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_2:21952458-21952477 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_2:21952458-21952477 | Msa0244030:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_2:21952496-21952515 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_2:21952664-21952683 | Msa0244030:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_2:21952680-21952699 | Msa0244030:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_2:21952715-21952734 | Msa0244030:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_2:21952925-21952944 | Msa0244030:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_2:21953108-21953127 | Msa0244030:CDS | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | chr2_2:21953115-21953134 | Msa0244030:CDS | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | + | chr2_2:21952458-21952477 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | - | chr2_2:21952458-21952477 | Msa0244030:CDS | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | + | chr2_2:21952496-21952515 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | - | chr2_2:21952664-21952683 | Msa0244030:CDS | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | - | chr2_2:21952680-21952699 | Msa0244030:CDS | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | - | chr2_2:21952715-21952734 | Msa0244030:CDS | 25.0% |
| ! | AGTTATTAAACATCTCAAGA+AGG | - | chr2_2:21952925-21952944 | Msa0244030:CDS | 25.0% |
| ! | TCTCTACAATCAACTAATAA+CGG | - | chr2_2:21953108-21953127 | Msa0244030:CDS | 25.0% |
| !!! | AATCAACTAATAACGGATTA+CGG | - | chr2_2:21953115-21953134 | Msa0244030:CDS | 25.0% |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_2:21952447-21952466 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_2:21952497-21952516 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_2:21952542-21952561 | Msa0244030:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_2:21952580-21952599 | Msa0244030:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_2:21952581-21952600 | Msa0244030:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_2:21952643-21952662 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_2:21952644-21952663 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_2:21952725-21952744 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_2:21952724-21952743 | Msa0244030:CDS | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_2:21953036-21953055 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_2:21953072-21953091 | Msa0244030:CDS | 30.0% | |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | + | chr2_2:21952447-21952466 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | + | chr2_2:21952497-21952516 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | - | chr2_2:21952542-21952561 | Msa0244030:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | - | chr2_2:21952580-21952599 | Msa0244030:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | - | chr2_2:21952581-21952600 | Msa0244030:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | + | chr2_2:21952643-21952662 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | + | chr2_2:21952644-21952663 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | + | chr2_2:21952725-21952744 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | - | chr2_2:21952724-21952743 | Msa0244030:CDS | 30.0% | |
| !! | CATAGTTGATATCCATTTTG+TGG | + | chr2_2:21953036-21953055 | None:intergenic | 30.0% |
| CAATCAAACTATATCCTCAA+AGG | - | chr2_2:21953072-21953091 | Msa0244030:CDS | 30.0% | |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_2:21952432-21952451 | Msa0244030:CDS | 35.0% |
| ! | TCATCATTGATGATCTCAAC+AGG | + | chr2_2:21952518-21952537 | None:intergenic | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_2:21952575-21952594 | Msa0244030:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_2:21952683-21952702 | Msa0244030:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_2:21952709-21952728 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_2:21952729-21952748 | Msa0244030:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_2:21952734-21952753 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_2:21952803-21952822 | Msa0244030:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_2:21952808-21952827 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_2:21952875-21952894 | Msa0244030:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_2:21952876-21952895 | Msa0244030:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_2:21952912-21952931 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_2:21952949-21952968 | Msa0244030:CDS | 35.0% | |
| CCAAAACAATTTGTGGTAGT+GGG | + | chr2_2:21953011-21953030 | None:intergenic | 35.0% | |
| ! | CCACTACCACAAATTGTTTT+GGG | - | chr2_2:21953009-21953028 | Msa0244030:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_2:21953021-21953040 | Msa0244030:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_2:21953089-21953108 | None:intergenic | 35.0% | |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | chr2_2:21953132-21953151 | Msa0244030:CDS | 35.0% |
| !!! | ACAATATCAATGCCGTTTTG+AGG | - | chr2_2:21952432-21952451 | Msa0244030:CDS | 35.0% |
| ! | TCATCATTGATGATCTCAAC+AGG | + | chr2_2:21952518-21952537 | None:intergenic | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | - | chr2_2:21952575-21952594 | Msa0244030:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | - | chr2_2:21952683-21952702 | Msa0244030:CDS | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | + | chr2_2:21952709-21952728 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | - | chr2_2:21952729-21952748 | Msa0244030:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | + | chr2_2:21952734-21952753 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | - | chr2_2:21952803-21952822 | Msa0244030:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | + | chr2_2:21952808-21952827 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | - | chr2_2:21952875-21952894 | Msa0244030:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | - | chr2_2:21952876-21952895 | Msa0244030:CDS | 35.0% |
| ! | AATAACTTGTCCAATGCAGT+TGG | + | chr2_2:21952912-21952931 | None:intergenic | 35.0% |
| TAAGCATGTATCCAAATCCA+TGG | - | chr2_2:21952949-21952968 | Msa0244030:CDS | 35.0% | |
| CCAAAACAATTTGTGGTAGT+GGG | + | chr2_2:21953011-21953030 | None:intergenic | 35.0% | |
| ! | CCACTACCACAAATTGTTTT+GGG | - | chr2_2:21953009-21953028 | Msa0244030:CDS | 35.0% |
| !!! | ATTGTTTTGGGACCACAAAA+TGG | - | chr2_2:21953021-21953040 | Msa0244030:CDS | 35.0% |
| ATCATCAAACTCATCCTTTG+AGG | + | chr2_2:21953089-21953108 | None:intergenic | 35.0% | |
| ! | TTACGGTGAGCTTAAACTTT+TGG | - | chr2_2:21953132-21953151 | Msa0244030:CDS | 35.0% |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_2:21952573-21952592 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_2:21952765-21952784 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_2:21952835-21952854 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_2:21952833-21952852 | Msa0244030:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_2:21952877-21952896 | Msa0244030:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_2:21952963-21952982 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_2:21952969-21952988 | None:intergenic | 40.0% | |
| ! | CCCACTACCACAAATTGTTT+TGG | - | chr2_2:21953008-21953027 | Msa0244030:CDS | 40.0% |
| CCCAAAACAATTTGTGGTAG+TGG | + | chr2_2:21953012-21953031 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_2:21953018-21953037 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_2:21953170-21953189 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_2:21953177-21953196 | Msa0244030:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_2:21953226-21953245 | Msa0244030:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_2:21953239-21953258 | Msa0244030:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_2:21953246-21953265 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_2:21953307-21953326 | None:intergenic | 40.0% | |
| TCCATCTTTATACACCTCAG+TGG | + | chr2_2:21952573-21952592 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | + | chr2_2:21952765-21952784 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | + | chr2_2:21952835-21952854 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | - | chr2_2:21952833-21952852 | Msa0244030:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | - | chr2_2:21952877-21952896 | Msa0244030:CDS | 40.0% |
| GGACACATATTCCATGGATT+TGG | + | chr2_2:21952963-21952982 | None:intergenic | 40.0% | |
| AGCAATGGACACATATTCCA+TGG | + | chr2_2:21952969-21952988 | None:intergenic | 40.0% | |
| ! | CCCACTACCACAAATTGTTT+TGG | - | chr2_2:21953008-21953027 | Msa0244030:CDS | 40.0% |
| CCCAAAACAATTTGTGGTAG+TGG | + | chr2_2:21953012-21953031 | None:intergenic | 40.0% | |
| TGTGGTCCCAAAACAATTTG+TGG | + | chr2_2:21953018-21953037 | None:intergenic | 40.0% | |
| CATCTTAGTATCAGCTGGAT+CGG | + | chr2_2:21953170-21953189 | None:intergenic | 40.0% | |
| TGATACTAAGATGAACCGAG+AGG | - | chr2_2:21953177-21953196 | Msa0244030:CDS | 40.0% | |
| ATCAACAGCAAATCACTCCT+TGG | - | chr2_2:21953226-21953245 | Msa0244030:CDS | 40.0% | |
| ! | CACTCCTTGGACTTTTTGTT+TGG | - | chr2_2:21953239-21953258 | Msa0244030:CDS | 40.0% |
| CACTCCAAACAAAAAGTCCA+AGG | + | chr2_2:21953246-21953265 | None:intergenic | 40.0% | |
| AGCATTTCCTCCAAGATGTA+AGG | + | chr2_2:21953307-21953326 | None:intergenic | 40.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_2:21952466-21952485 | Msa0244030:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_2:21952569-21952588 | Msa0244030:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_2:21952689-21952708 | Msa0244030:CDS | 45.0% | |
| !! | ACAATTTGTGGTAGTGGGCT+TGG | + | chr2_2:21953006-21953025 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_2:21953136-21953155 | Msa0244030:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_2:21953175-21953194 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_2:21953190-21953209 | Msa0244030:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_2:21953289-21953308 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_2:21953294-21953313 | Msa0244030:CDS | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | - | chr2_2:21952466-21952485 | Msa0244030:CDS | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | - | chr2_2:21952569-21952588 | Msa0244030:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | - | chr2_2:21952689-21952708 | Msa0244030:CDS | 45.0% | |
| !! | ACAATTTGTGGTAGTGGGCT+TGG | + | chr2_2:21953006-21953025 | None:intergenic | 45.0% |
| ! | GGTGAGCTTAAACTTTTGGC+AGG | - | chr2_2:21953136-21953155 | Msa0244030:CDS | 45.0% |
| CGGTTCATCTTAGTATCAGC+TGG | + | chr2_2:21953175-21953194 | None:intergenic | 45.0% | |
| !! | AACCGAGAGGTGTTCATTGA+GGG | - | chr2_2:21953190-21953209 | Msa0244030:CDS | 45.0% |
| TAAGGCTCGATGTCATTGCT+CGG | + | chr2_2:21953289-21953308 | None:intergenic | 45.0% | |
| TGACATCGAGCCTTACATCT+TGG | - | chr2_2:21953294-21953313 | Msa0244030:CDS | 45.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_2:21952553-21952572 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_2:21952899-21952918 | Msa0244030:CDS | 50.0% |
| !! | ATTTGTGGTAGTGGGCTTGG+AGG | + | chr2_2:21953003-21953022 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_2:21953189-21953208 | Msa0244030:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_2:21953297-21953316 | Msa0244030:CDS | 50.0% | |
| TGGCGAAGCCTAGAATGAAG+TGG | + | chr2_2:21952553-21952572 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | - | chr2_2:21952899-21952918 | Msa0244030:CDS | 50.0% |
| !! | ATTTGTGGTAGTGGGCTTGG+AGG | + | chr2_2:21953003-21953022 | None:intergenic | 50.0% |
| !! | GAACCGAGAGGTGTTCATTG+AGG | - | chr2_2:21953189-21953208 | Msa0244030:CDS | 50.0% |
| CATCGAGCCTTACATCTTGG+AGG | - | chr2_2:21953297-21953316 | Msa0244030:CDS | 50.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_2:21952556-21952575 | Msa0244030:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_2:21952600-21952619 | Msa0244030:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_2:21953195-21953214 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_2:21953281-21953300 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_2:21953285-21953304 | None:intergenic | 55.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | - | chr2_2:21952556-21952575 | Msa0244030:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | - | chr2_2:21952600-21952619 | Msa0244030:CDS | 55.0% | |
| CGCCCTCAATGAACACCTCT+CGG | + | chr2_2:21953195-21953214 | None:intergenic | 55.0% | |
| ! | GATGTCATTGCTCGGTGGGT+TGG | + | chr2_2:21953281-21953300 | None:intergenic | 55.0% |
| GCTCGATGTCATTGCTCGGT+GGG | + | chr2_2:21953285-21953304 | None:intergenic | 55.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_2:21952984-21953003 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_2:21952992-21953011 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_2:21953286-21953305 | None:intergenic | 60.0% | |
| GAGGAGCTCTGTCGGAGCAA+TGG | + | chr2_2:21952984-21953003 | None:intergenic | 60.0% | |
| TGGGCTTGGAGGAGCTCTGT+CGG | + | chr2_2:21952992-21953011 | None:intergenic | 60.0% | |
| GGCTCGATGTCATTGCTCGG+TGG | + | chr2_2:21953286-21953305 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 21952416 | 21953351 | 21952416 | ID=Msa0244030;Name=Msa0244030 |
| chr2_2 | mRNA | 21952416 | 21953351 | 21952416 | ID=Msa0244030-mRNA-1;Parent=Msa0244030;Name=Msa0244030-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|311 |
| chr2_2 | exon | 21952416 | 21953351 | 21952416 | ID=Msa0244030-mRNA-1:exon:8553;Parent=Msa0244030-mRNA-1 |
| chr2_2 | CDS | 21952416 | 21953351 | 21952416 | ID=Msa0244030-mRNA-1:cds;Parent=Msa0244030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
