Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282930 | XP_013441887.1 | 83.784 | 148 | 10 | 2 | 1 | 136 | 23 | 168 | 1.91e-81 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282930 | A0A072TEX8 | 83.784 | 148 | 10 | 2 | 1 | 136 | 23 | 168 | 9.12e-82 | 252 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201430 | Msa0282930 | 0.915158 | 8.206398e-85 | -8.615850e-47 |
| Msa0201440 | Msa0282930 | 0.876634 | 1.194506e-68 | -8.615850e-47 |
| Msa0201450 | Msa0282930 | 0.889237 | 2.899567e-73 | -8.615850e-47 |
| Msa0201460 | Msa0282930 | 0.851811 | 6.958265e-61 | -8.615850e-47 |
| Msa0201470 | Msa0282930 | 0.883820 | 3.244920e-71 | -8.615850e-47 |
| Msa0244020 | Msa0282930 | 0.863941 | 1.736781e-64 | -8.615850e-47 |
| Msa0244030 | Msa0282930 | 0.854292 | 1.356511e-61 | -8.615850e-47 |
| Msa0244040 | Msa0282930 | 0.855096 | 7.931683e-62 | -8.615850e-47 |
| Msa0244050 | Msa0282930 | 0.852764 | 3.725600e-61 | -8.615850e-47 |
| Msa0244060 | Msa0282930 | 0.885835 | 5.771869e-72 | -8.615850e-47 |
| Msa0244070 | Msa0282930 | 0.879891 | 8.605382e-70 | -8.615850e-47 |
| Msa0244080 | Msa0282930 | 0.848840 | 4.742874e-60 | -8.615850e-47 |
| Msa0282910 | Msa0282930 | 0.873454 | 1.452649e-67 | -8.615850e-47 |
| Msa0282920 | Msa0282930 | 0.888470 | 5.737645e-73 | -8.615850e-47 |
| Msa0282930 | Msa0655370 | 0.801103 | 1.054198e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0282930 | MtrunA17_Chr2g0303381 | 83.784 | 148 | 10 | 2 | 1 | 136 | 23 | 168 | 1.76e-85 | 252 |
| Msa0282930 | MtrunA17_Chr2g0303401 | 83.784 | 148 | 10 | 2 | 1 | 136 | 23 | 168 | 1.76e-85 | 252 |
| Msa0282930 | MtrunA17_Chr8g0350511 | 45.455 | 143 | 58 | 2 | 5 | 135 | 27 | 161 | 4.06e-34 | 120 |
| Msa0282930 | MtrunA17_Chr8g0350521 | 45.455 | 143 | 58 | 2 | 5 | 135 | 27 | 161 | 4.06e-34 | 120 |
| Msa0282930 | MtrunA17_Chr8g0350541 | 45.455 | 143 | 58 | 2 | 5 | 135 | 27 | 161 | 4.06e-34 | 120 |
| Msa0282930 | MtrunA17_Chr8g0350501 | 45.455 | 143 | 58 | 2 | 5 | 135 | 27 | 161 | 4.06e-34 | 120 |
| Msa0282930 | MtrunA17_Chr2g0297811 | 48.667 | 150 | 61 | 4 | 1 | 136 | 22 | 169 | 1.59e-33 | 119 |
| Msa0282930 | MtrunA17_Chr2g0297801 | 48.667 | 150 | 61 | 4 | 1 | 136 | 22 | 169 | 1.59e-33 | 119 |
| Msa0282930 | MtrunA17_Chr2g0297791 | 48.667 | 150 | 61 | 4 | 1 | 136 | 22 | 169 | 1.59e-33 | 119 |
| Msa0282930 | MtrunA17_Chr8g0350531 | 45.455 | 143 | 58 | 2 | 5 | 135 | 27 | 161 | 1.48e-32 | 120 |
| Msa0282930 | MtrunA17_Chr8g0350531 | 45.455 | 143 | 58 | 2 | 5 | 135 | 291 | 425 | 1.48e-32 | 120 |
| Msa0282930 | MtrunA17_Chr8g0350551 | 44.755 | 143 | 59 | 2 | 5 | 135 | 27 | 161 | 2.10e-32 | 115 |
| Msa0282930 | MtrunA17_Chr2g0297731 | 45.205 | 146 | 56 | 5 | 6 | 136 | 16 | 152 | 3.97e-31 | 112 |
| Msa0282930 | MtrunA17_Chr2g0297761 | 45.890 | 146 | 52 | 7 | 8 | 136 | 18 | 153 | 2.79e-27 | 102 |
| Msa0282930 | MtrunA17_Chr2g0297771 | 45.890 | 146 | 52 | 7 | 8 | 136 | 18 | 153 | 2.79e-27 | 102 |
| Msa0282930 | MtrunA17_Chr2g0297781 | 45.890 | 146 | 52 | 7 | 8 | 136 | 18 | 153 | 2.79e-27 | 102 |
| Msa0282930 | MtrunA17_Chr8g0350441 | 40.278 | 144 | 62 | 5 | 5 | 135 | 26 | 158 | 2.72e-24 | 94.7 |
| Msa0282930 | MtrunA17_Chr8g0350431 | 40.278 | 144 | 62 | 5 | 5 | 135 | 26 | 158 | 3.30e-24 | 94.4 |
| Msa0282930 | MtrunA17_Chr8g0350421 | 40.278 | 144 | 62 | 5 | 5 | 135 | 26 | 158 | 3.30e-24 | 94.4 |
| Msa0282930 | MtrunA17_Chr8g0350411 | 40.278 | 144 | 62 | 5 | 5 | 135 | 26 | 158 | 3.30e-24 | 94.4 |
| Msa0282930 | MtrunA17_Chr8g0350451 | 40.580 | 138 | 53 | 5 | 11 | 135 | 31 | 152 | 1.88e-20 | 84.0 |
| Msa0282930 | MtrunA17_Chr8g0350461 | 40.580 | 138 | 53 | 5 | 11 | 135 | 31 | 152 | 1.88e-20 | 84.0 |
| Msa0282930 | MtrunA17_Chr8g0350471 | 40.580 | 138 | 53 | 5 | 11 | 135 | 31 | 152 | 1.88e-20 | 84.0 |
| Msa0282930 | MtrunA17_Chr2g0327611 | 32.576 | 132 | 61 | 4 | 20 | 136 | 49 | 167 | 1.28e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAATCATCTAAAGTTTC+TGG | 0.145221 | 2_3:-19483788 | None:intergenic |
| AATCAATTCCACTTCATTCT+AGG | 0.205618 | 2_3:+19483836 | Msa0282930:CDS |
| ATTCAATCCTAAGGAGAAAA+AGG | 0.297710 | 2_3:+19484018 | Msa0282930:CDS |
| GATATGTCTGATCGAGCTTA+TGG | 0.361529 | 2_3:-19484056 | None:intergenic |
| TACCTTGTCAATGATGATTC+TGG | 0.380807 | 2_3:+19484097 | Msa0282930:CDS |
| CGGGACATTTCGTTCGCGAT+TGG | 0.385507 | 2_3:+19483894 | Msa0282930:CDS |
| TCATCATTGATGATATTAAC+AGG | 0.403312 | 2_3:-19483809 | None:intergenic |
| CACTGCACTAGCATAATTGA+TGG | 0.434540 | 2_3:+19484127 | Msa0282930:CDS |
| GAAAATCATCTAAAGTTTCT+GGG | 0.456174 | 2_3:-19483787 | None:intergenic |
| TATATCGATTCTAGTGTGAC+TGG | 0.486159 | 2_3:+19484169 | Msa0282930:CDS |
| GCCACTGAGGTGTATAAAGA+TGG | 0.489071 | 2_3:+19483863 | Msa0282930:CDS |
| TATAAAGATGGAAAAGGAAC+GGG | 0.518546 | 2_3:+19483875 | Msa0282930:CDS |
| TAAATATCCATTCAATCCTA+AGG | 0.520789 | 2_3:+19484009 | Msa0282930:CDS |
| GCTGACTTCTCCAACTGCAT+TGG | 0.521072 | 2_3:+19484193 | Msa0282930:CDS |
| AATAACTTGTCCAATGCAGT+TGG | 0.521593 | 2_3:-19484203 | None:intergenic |
| ATGAAGGTTATGATAACTAT+CGG | 0.552996 | 2_3:+19483974 | Msa0282930:intron |
| TGAATGGATATTTAGTGCCA+TGG | 0.560003 | 2_3:-19484000 | None:intergenic |
| GAGGTGTATAAAGATGGAAA+AGG | 0.564302 | 2_3:+19483869 | Msa0282930:CDS |
| ATATCGATTCTAGTGTGACT+GGG | 0.576037 | 2_3:+19484170 | Msa0282930:CDS |
| ATGATAACTATCGGAGGCCA+TGG | 0.579102 | 2_3:+19483983 | Msa0282930:CDS |
| GTATAAAGATGGAAAAGGAA+CGG | 0.613441 | 2_3:+19483874 | Msa0282930:CDS |
| TGGCGAAGCCTAGAATGAAG+TGG | 0.614487 | 2_3:-19483844 | None:intergenic |
| TACCAGAATCATCATTGACA+AGG | 0.665409 | 2_3:-19484099 | None:intergenic |
| TCCATCTTTATACACCTCAG+TGG | 0.670679 | 2_3:-19483864 | None:intergenic |
| CATCAATTATGCTAGTGCAG+TGG | 0.677859 | 2_3:-19484126 | None:intergenic |
| CATTCTAGGCTTCGCCACTG+AGG | 0.701525 | 2_3:+19483850 | Msa0282930:CDS |
| AAGGTTATGATAACTATCGG+AGG | 0.701816 | 2_3:+19483977 | Msa0282930:intron |
| TATCGATTCTAGTGTGACTG+GGG | 0.708158 | 2_3:+19484171 | Msa0282930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATGAAATTTTGATT+TGG | - | chr2_3:19483045-19483064 | None:intergenic | 10.0% |
| !! | TTAATTAAAATACCAATAAT+AGG | + | chr2_3:19483419-19483438 | Msa0282930:intron | 10.0% |
| !!! | GTCTTTTTTTAATTTTTATT+AGG | - | chr2_3:19483469-19483488 | None:intergenic | 10.0% |
| !! | ATTATCTAGTCAATATATTT+AGG | + | chr2_3:19481390-19481409 | Msa0282930:intron | 15.0% |
| !!! | TTTTGGATTCATATTTTTTT+TGG | + | chr2_3:19481442-19481461 | Msa0282930:intron | 15.0% |
| !!! | TTTTTACTATACTAAAGAAA+AGG | - | chr2_3:19482163-19482182 | None:intergenic | 15.0% |
| !! | AAAAATTATAATCAATTGGA+AGG | - | chr2_3:19482188-19482207 | None:intergenic | 15.0% |
| !! | AGCAAAAAATTATAATCAAT+TGG | - | chr2_3:19482192-19482211 | None:intergenic | 15.0% |
| !!! | TTTTTATGAGTTTATGTTTT+AGG | - | chr2_3:19482450-19482469 | None:intergenic | 15.0% |
| !! | TATAGATAAAAATTTAGAGA+CGG | - | chr2_3:19482613-19482632 | None:intergenic | 15.0% |
| !! | TTATTTGTATTCAAAATTGA+GGG | - | chr2_3:19482698-19482717 | None:intergenic | 15.0% |
| !!! | TTACACTTTTTAAATGATAA+AGG | - | chr2_3:19482827-19482846 | None:intergenic | 15.0% |
| !! | TAACGTTTGAAAATTATTAA+CGG | - | chr2_3:19483072-19483091 | None:intergenic | 15.0% |
| !! | ATTCTATTAAATCAAGTATT+TGG | - | chr2_3:19483383-19483402 | None:intergenic | 15.0% |
| !! | TTTAATAATAGTTGTGATGA+TGG | + | chr2_3:19481077-19481096 | Msa0282930:intron | 20.0% |
| !!! | AACTTTTTATGTTCACATTA+TGG | - | chr2_3:19481304-19481323 | None:intergenic | 20.0% |
| !! | CATAAAAAGTTCTTAATGAA+AGG | + | chr2_3:19481313-19481332 | Msa0282930:intron | 20.0% |
| !! | AAATTACAAGTTCCATAAAA+AGG | + | chr2_3:19481782-19481801 | Msa0282930:intron | 20.0% |
| !! | TTATTTAAGAAAGAAAGTAG+AGG | + | chr2_3:19481922-19481941 | Msa0282930:intron | 20.0% |
| !! | TTTCCAATAAAGAACATTAT+TGG | + | chr2_3:19482039-19482058 | Msa0282930:intron | 20.0% |
| !! | TTTGCTAAAAATATATAGAG+TGG | + | chr2_3:19482206-19482225 | Msa0282930:intron | 20.0% |
| !! | ATAATTCTAAATTGGAAATG+GGG | - | chr2_3:19482242-19482261 | None:intergenic | 20.0% |
| !! | CATAATTCTAAATTGGAAAT+GGG | - | chr2_3:19482243-19482262 | None:intergenic | 20.0% |
| !! | ACATAATTCTAAATTGGAAA+TGG | - | chr2_3:19482244-19482263 | None:intergenic | 20.0% |
| !!! | AATATGTCATTTCTAAAATC+AGG | + | chr2_3:19482513-19482532 | Msa0282930:intron | 20.0% |
| !! | GTTATTTGTATTCAAAATTG+AGG | - | chr2_3:19482699-19482718 | None:intergenic | 20.0% |
| !! | TTATAGAAAAGGTTGTTTAA+GGG | - | chr2_3:19482900-19482919 | None:intergenic | 20.0% |
| !! | ATTATAGAAAAGGTTGTTTA+AGG | - | chr2_3:19482901-19482920 | None:intergenic | 20.0% |
| !! | AACGATCTTTATTATAGAAA+AGG | - | chr2_3:19482911-19482930 | None:intergenic | 20.0% |
| !!! | AATTTTTATTAGGAACACTA+GGG | - | chr2_3:19483459-19483478 | None:intergenic | 20.0% |
| !!! | TAATTTTTATTAGGAACACT+AGG | - | chr2_3:19483460-19483479 | None:intergenic | 20.0% |
| !!! | ACTTATTAATTGATTTTCGT+TGG | - | chr2_3:19483631-19483650 | None:intergenic | 20.0% |
| !! | GAAAATGAAAATATGGAAAA+TGG | - | chr2_3:19483683-19483702 | None:intergenic | 20.0% |
| ! | TGTTTGAGGAAAAAAAAGAT+TGG | - | chr2_3:19481188-19481207 | None:intergenic | 25.0% |
| ! | AACAAAATGTCAATCTACTT+AGG | + | chr2_3:19481757-19481776 | Msa0282930:intron | 25.0% |
| !! | GAGTCAATTATACCTTTTTA+TGG | - | chr2_3:19481797-19481816 | None:intergenic | 25.0% |
| !! | AATGCATTGATCATTTCTTT+AGG | - | chr2_3:19481853-19481872 | None:intergenic | 25.0% |
| ! | AATGATCAATGCATTTGAAA+AGG | + | chr2_3:19481858-19481877 | Msa0282930:intron | 25.0% |
| ! | TGTCCAATAATGTTCTTTAT+TGG | - | chr2_3:19482045-19482064 | None:intergenic | 25.0% |
| ! | CGCATAACATAATTCTAAAT+TGG | - | chr2_3:19482250-19482269 | None:intergenic | 25.0% |
| ! | TACTCATTATATTCACACTA+TGG | - | chr2_3:19482304-19482323 | None:intergenic | 25.0% |
| !!! | TTCAAAATTGAGGGTATTTT+TGG | - | chr2_3:19482689-19482708 | None:intergenic | 25.0% |
| ! | TCTATAATAAAGATCGTTGT+TGG | + | chr2_3:19482913-19482932 | Msa0282930:intron | 25.0% |
| ! | TAATAAAAAAAGCGGAAAGA+CGG | + | chr2_3:19483095-19483114 | Msa0282930:intron | 25.0% |
| ! | TTAAATCAAGTATTTGGTCA+TGG | - | chr2_3:19483377-19483396 | None:intergenic | 25.0% |
| !! | ATTTTTATTAGGAACACTAG+GGG | - | chr2_3:19483458-19483477 | None:intergenic | 25.0% |
| ! | CATTATTAAATTGAGTTTGC+AGG | + | chr2_3:19483550-19483569 | Msa0282930:intron | 25.0% |
| !!! | ATTAATTGATTTTCGTTGGT+GGG | - | chr2_3:19483627-19483646 | None:intergenic | 25.0% |
| !!! | TATTAATTGATTTTCGTTGG+TGG | - | chr2_3:19483628-19483647 | None:intergenic | 25.0% |
| ! | TGTGATCGAAAATGAAAATA+TGG | - | chr2_3:19483690-19483709 | None:intergenic | 25.0% |
| ! | ATGTATTCTCGAAAAATTGT+TGG | - | chr2_3:19483752-19483771 | None:intergenic | 25.0% |
| !!! | ACAATTTTTCGAGAATACAT+TGG | + | chr2_3:19483752-19483771 | Msa0282930:intron | 25.0% |
| !! | GAAAATCATCTAAAGTTTCT+GGG | - | chr2_3:19483790-19483809 | None:intergenic | 25.0% |
| !! | TCATCATTGATGATATTAAC+AGG | - | chr2_3:19483812-19483831 | None:intergenic | 25.0% |
| ! | GAAAGAACATAAGAATATGA+AGG | + | chr2_3:19483958-19483977 | Msa0282930:intron | 25.0% |
| ! | ATGAAGGTTATGATAACTAT+CGG | + | chr2_3:19483974-19483993 | Msa0282930:intron | 25.0% |
| ! | TAAATATCCATTCAATCCTA+AGG | + | chr2_3:19484009-19484028 | Msa0282930:CDS | 25.0% |
| ! | AACTTTTTATGTGCACATCA+TGG | - | chr2_3:19481212-19481231 | None:intergenic | 30.0% |
| TGTTCACATTATGGTTGTTA+GGG | - | chr2_3:19481295-19481314 | None:intergenic | 30.0% | |
| ATGTTCACATTATGGTTGTT+AGG | - | chr2_3:19481296-19481315 | None:intergenic | 30.0% | |
| ! | ATTCAGTTTTCTCTAGTTGT+GGG | + | chr2_3:19481413-19481432 | Msa0282930:intron | 30.0% |
| TTCTACTTTATCTTCAGTTG+TGG | + | chr2_3:19481568-19481587 | Msa0282930:intron | 30.0% | |
| GAAAGAGATACAAAAAGTTG+GGG | - | chr2_3:19481704-19481723 | None:intergenic | 30.0% | |
| CGAAAGAGATACAAAAAGTT+GGG | - | chr2_3:19481705-19481724 | None:intergenic | 30.0% | |
| ACGAAAGAGATACAAAAAGT+TGG | - | chr2_3:19481706-19481725 | None:intergenic | 30.0% | |
| TACCAAACAATTCATGACAA+GGG | - | chr2_3:19482006-19482025 | None:intergenic | 30.0% | |
| TTCTTTATTGGAAACGAACT+CGG | - | chr2_3:19482033-19482052 | None:intergenic | 30.0% | |
| ! | AATCTACGAAATCTAGAGTT+CGG | - | chr2_3:19482088-19482107 | None:intergenic | 30.0% |
| TCATTTCCCCATATAATTGA+AGG | + | chr2_3:19482107-19482126 | Msa0282930:intron | 30.0% | |
| CATTTCCCCATATAATTGAA+GGG | + | chr2_3:19482108-19482127 | Msa0282930:intron | 30.0% | |
| TGTTGACCCTTCAATTATAT+GGG | - | chr2_3:19482117-19482136 | None:intergenic | 30.0% | |
| TATTCACACTATGGTTGTTA+CGG | - | chr2_3:19482295-19482314 | None:intergenic | 30.0% | |
| ACAACCCCTTTCAAAAAATT+TGG | + | chr2_3:19482648-19482667 | Msa0282930:intron | 30.0% | |
| CAACCCCTTTCAAAAAATTT+GGG | + | chr2_3:19482649-19482668 | Msa0282930:intron | 30.0% | |
| !!! | TCAGCCCAAATTTTTTGAAA+GGG | - | chr2_3:19482656-19482675 | None:intergenic | 30.0% |
| ! | GTTGTTTAAGGGTATAATTG+GGG | - | chr2_3:19482889-19482908 | None:intergenic | 30.0% |
| ! | GGTTGTTTAAGGGTATAATT+GGG | - | chr2_3:19482890-19482909 | None:intergenic | 30.0% |
| ! | AGGTTGTTTAAGGGTATAAT+TGG | - | chr2_3:19482891-19482910 | None:intergenic | 30.0% |
| CGTTAGCGTAATAAAAAAAG+CGG | + | chr2_3:19483087-19483106 | Msa0282930:intron | 30.0% | |
| ATAAATACTAGCGAAAAGAC+AGG | - | chr2_3:19483123-19483142 | None:intergenic | 30.0% | |
| TGTCTTTGTATGCCTATTAT+TGG | - | chr2_3:19483434-19483453 | None:intergenic | 30.0% | |
| ! | AAAAATTGTTGGCCTCAAAA+CGG | - | chr2_3:19483741-19483760 | None:intergenic | 30.0% |
| ! | GGAAAATCATCTAAAGTTTC+TGG | - | chr2_3:19483791-19483810 | None:intergenic | 30.0% |
| AATCAATTCCACTTCATTCT+AGG | + | chr2_3:19483836-19483855 | Msa0282930:CDS | 30.0% | |
| GTATAAAGATGGAAAAGGAA+CGG | + | chr2_3:19483874-19483893 | Msa0282930:CDS | 30.0% | |
| TATAAAGATGGAAAAGGAAC+GGG | + | chr2_3:19483875-19483894 | Msa0282930:CDS | 30.0% | |
| !!! | TGTGTTTGAACACTTTTTCT+GGG | - | chr2_3:19483937-19483956 | None:intergenic | 30.0% |
| !!! | TTGTGTTTGAACACTTTTTC+TGG | - | chr2_3:19483938-19483957 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTAGGATTGAA+TGG | - | chr2_3:19484019-19484038 | None:intergenic | 30.0% |
| ATTCAATCCTAAGGAGAAAA+AGG | + | chr2_3:19484018-19484037 | Msa0282930:CDS | 30.0% | |
| !! | GTTGTGATGATGGTTTAAAG+TGG | + | chr2_3:19481087-19481106 | Msa0282930:intron | 35.0% |
| !! | ATAATAAAGCCAAGAGCACT+TGG | + | chr2_3:19481150-19481169 | Msa0282930:intron | 35.0% |
| ! | GATTCAGTTTTCTCTAGTTG+TGG | + | chr2_3:19481412-19481431 | Msa0282930:intron | 35.0% |
| AGGATACAACAAGAATGGAA+CGG | - | chr2_3:19481519-19481538 | None:intergenic | 35.0% | |
| ! | TCCATTCTTGTTGTATCCTT+TGG | + | chr2_3:19481520-19481539 | Msa0282930:intron | 35.0% |
| ! | CCATTCTTGTTGTATCCTTT+GGG | + | chr2_3:19481521-19481540 | Msa0282930:intron | 35.0% |
| ACCAAACAATTCATGACAAG+GGG | - | chr2_3:19482005-19482024 | None:intergenic | 35.0% | |
| GTACCAAACAATTCATGACA+AGG | - | chr2_3:19482007-19482026 | None:intergenic | 35.0% | |
| GTTGACCCTTCAATTATATG+GGG | - | chr2_3:19482116-19482135 | None:intergenic | 35.0% | |
| ! | GTGTTGACCCTTCAATTATA+TGG | - | chr2_3:19482118-19482137 | None:intergenic | 35.0% |
| ATTCACACTATGGTTGTTAC+GGG | - | chr2_3:19482294-19482313 | None:intergenic | 35.0% | |
| !!! | CAGCCCAAATTTTTTGAAAG+GGG | - | chr2_3:19482655-19482674 | None:intergenic | 35.0% |
| !!! | GTCAGCCCAAATTTTTTGAA+AGG | - | chr2_3:19482657-19482676 | None:intergenic | 35.0% |
| TAAATCTCACATACGAGTAG+AGG | - | chr2_3:19483235-19483254 | None:intergenic | 35.0% | |
| ACTCGTATGTGAGATTTAAG+TGG | + | chr2_3:19483237-19483256 | Msa0282930:intron | 35.0% | |
| GAGTTTGCAGGCTTATAAAA+AGG | + | chr2_3:19483562-19483581 | Msa0282930:intron | 35.0% | |
| ! | AAAAAGGCATACCAAGAGTT+TGG | + | chr2_3:19483578-19483597 | Msa0282930:intron | 35.0% |
| !!! | ACAATATCAATGCCGTTTTG+AGG | + | chr2_3:19483726-19483745 | Msa0282930:intron | 35.0% |
| GAGGTGTATAAAGATGGAAA+AGG | + | chr2_3:19483869-19483888 | Msa0282930:CDS | 35.0% | |
| AAGGTTATGATAACTATCGG+AGG | + | chr2_3:19483977-19483996 | Msa0282930:intron | 35.0% | |
| TGAATGGATATTTAGTGCCA+TGG | - | chr2_3:19484003-19484022 | None:intergenic | 35.0% | |
| ATCCTAAGGAGAAAAAGGTA+TGG | + | chr2_3:19484023-19484042 | Msa0282930:CDS | 35.0% | |
| ! | ATCCATACCTTTTTCTCCTT+AGG | - | chr2_3:19484028-19484047 | None:intergenic | 35.0% |
| TACCTTGTCAATGATGATTC+TGG | + | chr2_3:19484097-19484116 | Msa0282930:CDS | 35.0% | |
| TACCAGAATCATCATTGACA+AGG | - | chr2_3:19484102-19484121 | None:intergenic | 35.0% | |
| !! | TATATCGATTCTAGTGTGAC+TGG | + | chr2_3:19484169-19484188 | Msa0282930:CDS | 35.0% |
| !! | ATATCGATTCTAGTGTGACT+GGG | + | chr2_3:19484170-19484189 | Msa0282930:CDS | 35.0% |
| !! | GCTCTTGGCTTTATTATCAC+CGG | - | chr2_3:19481147-19481166 | None:intergenic | 40.0% |
| CCCAAAGGATACAACAAGAA+TGG | - | chr2_3:19481524-19481543 | None:intergenic | 40.0% | |
| ! | TTCAGTTGTGGTAACTTGTC+TGG | + | chr2_3:19481580-19481599 | Msa0282930:intron | 40.0% |
| CACGATATACTCCATTTGAG+TGG | + | chr2_3:19481657-19481676 | Msa0282930:intron | 40.0% | |
| ATTTGAGTGGTACCATTGGT+CGG | + | chr2_3:19481670-19481689 | Msa0282930:intron | 40.0% | |
| TCCCCTTGTCATGAATTGTT+TGG | + | chr2_3:19482001-19482020 | Msa0282930:intron | 40.0% | |
| GTGTTGGAATTCCAAACTCT+TGG | - | chr2_3:19483592-19483611 | None:intergenic | 40.0% | |
| !! | TGGGTTTGATTGGTTTGTGT+TGG | - | chr2_3:19483608-19483627 | None:intergenic | 40.0% |
| !!! | TTTTCGTTGGTGGGTTTGAT+TGG | - | chr2_3:19483618-19483637 | None:intergenic | 40.0% |
| TCCATCTTTATACACCTCAG+TGG | - | chr2_3:19483867-19483886 | None:intergenic | 40.0% | |
| GATATGTCTGATCGAGCTTA+TGG | - | chr2_3:19484059-19484078 | None:intergenic | 40.0% | |
| CATCAATTATGCTAGTGCAG+TGG | - | chr2_3:19484129-19484148 | None:intergenic | 40.0% | |
| CACTGCACTAGCATAATTGA+TGG | + | chr2_3:19484127-19484146 | Msa0282930:CDS | 40.0% | |
| !! | TATCGATTCTAGTGTGACTG+GGG | + | chr2_3:19484171-19484190 | Msa0282930:CDS | 40.0% |
| AAGTGGTGTTTCCTAGAGCT+AGG | + | chr2_3:19481104-19481123 | Msa0282930:intron | 45.0% | |
| AGTGGTGTTTCCTAGAGCTA+GGG | + | chr2_3:19481105-19481124 | Msa0282930:intron | 45.0% | |
| GGGGCTGATGACTTAAAATC+CGG | + | chr2_3:19481125-19481144 | Msa0282930:intron | 45.0% | |
| GTGCACATCATGGTTGTTTG+AGG | - | chr2_3:19481202-19481221 | None:intergenic | 45.0% | |
| ! | CTAGTTGTGGGTCGTGATTT+TGG | + | chr2_3:19481425-19481444 | Msa0282930:intron | 45.0% |
| ATATGCCGATCTTTCCGCAA+CGG | + | chr2_3:19481467-19481486 | Msa0282930:intron | 45.0% | |
| ! | TCTTGTTGTATCCTTTGGGC+CGG | + | chr2_3:19481525-19481544 | Msa0282930:intron | 45.0% |
| CAAAACCAACCCAAACTCTC+CGG | - | chr2_3:19481547-19481566 | None:intergenic | 45.0% | |
| CTCCATTTGAGTGGTACCAT+TGG | + | chr2_3:19481666-19481685 | Msa0282930:intron | 45.0% | |
| GACCAATGGTACCACTCAAA+TGG | - | chr2_3:19481671-19481690 | None:intergenic | 45.0% | |
| ! | AAATCTAGAGTTCGGCTGCA+AGG | - | chr2_3:19482080-19482099 | None:intergenic | 45.0% |
| TTCGCGAGCTATCAACTCAA+AGG | - | chr2_3:19482489-19482508 | None:intergenic | 45.0% | |
| !! | TGAGTTGATAGCTCGCGAAT+AGG | + | chr2_3:19482490-19482509 | Msa0282930:intron | 45.0% |
| ACATACGAGTAGAGGAGATG+AGG | - | chr2_3:19483227-19483246 | None:intergenic | 45.0% | |
| TCGAGAATACATTGGCGTGA+AGG | + | chr2_3:19483760-19483779 | Msa0282930:intron | 45.0% | |
| GCCACTGAGGTGTATAAAGA+TGG | + | chr2_3:19483863-19483882 | Msa0282930:CDS | 45.0% | |
| ATGATAACTATCGGAGGCCA+TGG | + | chr2_3:19483983-19484002 | Msa0282930:CDS | 45.0% | |
| GTGGTGTTTCCTAGAGCTAG+GGG | + | chr2_3:19481106-19481125 | Msa0282930:intron | 50.0% | |
| CCATCTCATCCAAGTGCTCT+TGG | - | chr2_3:19481162-19481181 | None:intergenic | 50.0% | |
| !! | CCAAGAGCACTTGGATGAGA+TGG | + | chr2_3:19481159-19481178 | Msa0282930:intron | 50.0% |
| AACCACCGTTGCGGAAAGAT+CGG | - | chr2_3:19481475-19481494 | None:intergenic | 50.0% | |
| ! | GGGGTATTAGATCCGACCAA+TGG | - | chr2_3:19481685-19481704 | None:intergenic | 50.0% |
| TGGCGAAGCCTAGAATGAAG+TGG | - | chr2_3:19483847-19483866 | None:intergenic | 50.0% | |
| ! | GCTGACTTCTCCAACTGCAT+TGG | + | chr2_3:19484193-19484212 | Msa0282930:CDS | 50.0% |
| ! | AGTCATCAGCCCCTAGCTCT+AGG | - | chr2_3:19481118-19481137 | None:intergenic | 55.0% |
| ATGAAGCGCAACCACCGTTG+CGG | - | chr2_3:19481484-19481503 | None:intergenic | 55.0% | |
| ATCCTTTGGGCCGGAGAGTT+TGG | + | chr2_3:19481534-19481553 | Msa0282930:intron | 55.0% | |
| TCCTTTGGGCCGGAGAGTTT+GGG | + | chr2_3:19481535-19481554 | Msa0282930:intron | 55.0% | |
| CATTCTAGGCTTCGCCACTG+AGG | + | chr2_3:19483850-19483869 | Msa0282930:CDS | 55.0% | |
| CGGGACATTTCGTTCGCGAT+TGG | + | chr2_3:19483894-19483913 | Msa0282930:CDS | 55.0% | |
| TGCCGATCTTTCCGCAACGG+TGG | + | chr2_3:19481470-19481489 | Msa0282930:intron | 60.0% | |
| GCAACGGTGGTTGCGCTTCA+TGG | + | chr2_3:19481483-19481502 | Msa0282930:intron | 60.0% | |
| GGTTGCGCTTCATGGTCTGC+AGG | + | chr2_3:19481491-19481510 | Msa0282930:intron | 60.0% | |
| ACCCAAACTCTCCGGCCCAA+AGG | - | chr2_3:19481539-19481558 | None:intergenic | 60.0% | |
| TTGGGCCGGAGAGTTTGGGT+TGG | + | chr2_3:19481539-19481558 | Msa0282930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 19480972 | 19484219 | 19480972 | ID=Msa0282930;Name=Msa0282930 |
| chr2_3 | mRNA | 19480972 | 19484219 | 19480972 | ID=Msa0282930-mRNA-1;Parent=Msa0282930;Name=Msa0282930-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.66|0|0|3|0|136 |
| chr2_3 | exon | 19480972 | 19480977 | 19480972 | ID=Msa0282930-mRNA-1:exon:7844;Parent=Msa0282930-mRNA-1 |
| chr2_3 | exon | 19483782 | 19483943 | 19483782 | ID=Msa0282930-mRNA-1:exon:7845;Parent=Msa0282930-mRNA-1 |
| chr2_3 | exon | 19483980 | 19484219 | 19483980 | ID=Msa0282930-mRNA-1:exon:7846;Parent=Msa0282930-mRNA-1 |
| chr2_3 | CDS | 19480972 | 19480977 | 19480972 | ID=Msa0282930-mRNA-1:cds;Parent=Msa0282930-mRNA-1 |
| chr2_3 | CDS | 19483782 | 19483943 | 19483782 | ID=Msa0282930-mRNA-1:cds;Parent=Msa0282930-mRNA-1 |
| chr2_3 | CDS | 19483980 | 19484219 | 19483980 | ID=Msa0282930-mRNA-1:cds;Parent=Msa0282930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
