Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0205160 | XP_013463769.1 | 86.965 | 514 | 65 | 2 | 1 | 513 | 1 | 513 | 0.0 | 880 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0205160 | A0A072V6W3 | 86.965 | 514 | 65 | 2 | 1 | 513 | 1 | 513 | 0.0 | 880 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0073820 | Msa0205160 | 0.801053 | 1.079358e-48 | -8.615850e-47 |
Msa0194570 | Msa0205160 | 0.800913 | 1.153086e-48 | -8.615850e-47 |
Msa0205160 | Msa0298940 | 0.812359 | 4.411231e-51 | -8.615850e-47 |
Msa0205160 | Msa0298970 | 0.822456 | 2.346261e-53 | -8.615850e-47 |
Msa0205160 | Msa0374070 | 0.800130 | 1.664922e-48 | -8.615850e-47 |
Msa0205160 | Msa0520590 | 0.807915 | 4.003213e-50 | -8.615850e-47 |
Msa0205160 | Msa0575250 | 0.805169 | 1.520126e-49 | -8.615850e-47 |
Msa0205160 | Msa0576420 | 0.802885 | 4.536371e-49 | -8.615850e-47 |
Msa0205160 | Msa1129560 | 0.813458 | 2.533874e-51 | -8.615850e-47 |
Msa0205160 | Msa1254770 | 0.804627 | 1.972799e-49 | -8.615850e-47 |
Msa0205160 | Msa1254800 | 0.807614 | 4.636991e-50 | -8.615850e-47 |
Msa0205160 | Msa1353530 | 0.813017 | 3.165774e-51 | -8.615850e-47 |
Msa0205160 | Msa1442170 | 0.843165 | 1.656940e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0205160 | MtrunA17_Chr2g0303331 | 86.965 | 514 | 65 | 2 | 1 | 513 | 1 | 513 | 0.0 | 880 |
Msa0205160 | MtrunA17_Chr4g0018601 | 47.507 | 381 | 138 | 11 | 9 | 379 | 23 | 351 | 4.45e-84 | 272 |
Msa0205160 | MtrunA17_Chr4g0018601 | 76.667 | 120 | 26 | 1 | 272 | 389 | 498 | 617 | 4.93e-53 | 189 |
Msa0205160 | MtrunA17_Chr1g0170751 | 60.000 | 260 | 73 | 6 | 272 | 513 | 474 | 720 | 4.43e-77 | 260 |
Msa0205160 | MtrunA17_Chr1g0170751 | 41.603 | 262 | 105 | 8 | 146 | 395 | 120 | 345 | 7.68e-38 | 148 |
Msa0205160 | MtrunA17_Chr2g0281961 | 55.280 | 161 | 35 | 7 | 28 | 188 | 22 | 145 | 1.47e-37 | 135 |
Msa0205160 | MtrunA17_Chr1g0185901 | 37.959 | 245 | 125 | 8 | 286 | 506 | 562 | 803 | 3.71e-24 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 159 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGAGGAAATGTCAAATTT+TGG | 0.102293 | 2_1:+31507475 | Msa0205160:CDS |
CTTTGATTATTTAAATTTCT+AGG | 0.188454 | 2_1:-31508207 | None:intergenic |
GCTAAGAGGTTCAAAATATT+TGG | 0.188718 | 2_1:+31509245 | Msa0205160:three_prime_UTR |
ACTTGATCAAATGAGAAAAT+TGG | 0.205396 | 2_1:+31509488 | Msa0205160:three_prime_UTR |
AACAAAATGTTTAGGCGTTT+TGG | 0.208672 | 2_1:+31509125 | Msa0205160:three_prime_UTR |
AGCAGCCTTCCCATGATAAT+TGG | 0.226511 | 2_1:-31509346 | None:intergenic |
CATCCAGCAAAGAAGGAAAA+AGG | 0.274469 | 2_1:+31508273 | Msa0205160:CDS |
TTCTGTTTGTGCAGGATTGC+TGG | 0.285908 | 2_1:+31507930 | Msa0205160:intron |
AACCAAACTGCCGAGGTTAA+AGG | 0.302938 | 2_1:+31507787 | Msa0205160:CDS |
CAATTAACTTGGGCTGGCTT+TGG | 0.312666 | 2_1:-31508957 | None:intergenic |
ATTCAATACTATACACGAAT+TGG | 0.317023 | 2_1:+31507413 | Msa0205160:CDS |
TTAATTGTGGGCCCTATTCC+TGG | 0.320932 | 2_1:+31508973 | Msa0205160:three_prime_UTR |
GAGGATTTGAGTGGAGAAGC+TGG | 0.330533 | 2_1:+31507229 | Msa0205160:CDS |
TGCACTATGGAGGATGCTGC+TGG | 0.334939 | 2_1:+31507337 | Msa0205160:CDS |
GATGACTTCAAAATTCAAAC+TGG | 0.354447 | 2_1:+31508411 | Msa0205160:CDS |
CATTCTCATTCGCAATCTTT+CGG | 0.354775 | 2_1:+31506764 | Msa0205160:five_prime_UTR |
ATATAACCAGGAGGTTTGTT+AGG | 0.362436 | 2_1:-31509029 | None:intergenic |
TGCTGGGGCCGCAGGTCACC+CGG | 0.366796 | 2_1:+31507354 | Msa0205160:CDS |
TTCGGCAATGGTTGTTGCAC+TGG | 0.373071 | 2_1:-31508894 | None:intergenic |
GGATAGAGTGGTTTCGGAAA+GGG | 0.380946 | 2_1:+31507279 | Msa0205160:CDS |
TTCCTCAATATCAACAATAC+TGG | 0.388085 | 2_1:-31507461 | None:intergenic |
CTCCAGTATTGTTGATATTG+AGG | 0.397240 | 2_1:+31507459 | Msa0205160:CDS |
TTAACTTGGGCTGGCTTTGG+TGG | 0.399327 | 2_1:-31508954 | None:intergenic |
AAGTTCATTTCACAGAGAAT+TGG | 0.400294 | 2_1:-31506795 | None:intergenic |
GGGTAGTTTCTTCTTCCTCA+TGG | 0.403985 | 2_1:-31508784 | None:intergenic |
CTCAAAGCTTTGAACACGCT+TGG | 0.409796 | 2_1:-31509302 | None:intergenic |
ATGGTGTATCCAACTTTAGA+TGG | 0.412565 | 2_1:+31509398 | Msa0205160:three_prime_UTR |
TAAGTTGGATAGAGTGGTTT+CGG | 0.414914 | 2_1:+31507273 | Msa0205160:CDS |
TACCTTTAACCTCGGCAGTT+TGG | 0.419407 | 2_1:-31507789 | None:intergenic |
CTAATTTCTACTAACATAGT+TGG | 0.421937 | 2_1:+31509595 | Msa0205160:three_prime_UTR |
TTGTTGGACTCCAGTTCATC+TGG | 0.422462 | 2_1:+31508341 | Msa0205160:CDS |
TCAACTTTATCGTTCACAAT+TGG | 0.425111 | 2_1:-31507571 | None:intergenic |
GATTAAAGATCCAATTATCA+TGG | 0.426616 | 2_1:+31509336 | Msa0205160:three_prime_UTR |
CAAACCTTAACAAAATGTTT+AGG | 0.433748 | 2_1:+31509117 | Msa0205160:three_prime_UTR |
ACAAATTCATCGTTTACAAC+TGG | 0.435206 | 2_1:+31508471 | Msa0205160:CDS |
GGCCCACAATTAACTTGGGC+TGG | 0.445403 | 2_1:-31508963 | None:intergenic |
GCTGGGGCCGCAGGTCACCC+GGG | 0.446440 | 2_1:+31507355 | Msa0205160:CDS |
AGTTGTAAACGATGAATTTG+TGG | 0.447057 | 2_1:-31508469 | None:intergenic |
GAATCCAGAGAACCATTCAT+TGG | 0.447830 | 2_1:-31508306 | None:intergenic |
ATTCTCCAGACGGTGATTGT+TGG | 0.448044 | 2_1:+31508325 | Msa0205160:CDS |
TCAGGTGCAACCAGATGAAC+TGG | 0.448957 | 2_1:-31508351 | None:intergenic |
GAGGATGCTGCTGGGGCCGC+AGG | 0.453197 | 2_1:+31507346 | Msa0205160:CDS |
ATTGTGAACGATAAAGTTGA+TGG | 0.456872 | 2_1:+31507574 | Msa0205160:CDS |
TGACGAGGAACAAGATTTGT+TGG | 0.456916 | 2_1:+31508134 | Msa0205160:CDS |
TACTATGCATCCAGCAAAGA+AGG | 0.457588 | 2_1:+31508266 | Msa0205160:CDS |
GCAACAGCATGTGGCTCCCT+TGG | 0.457839 | 2_1:-31508020 | None:intergenic |
AACTAGGACTGTGCTGAGTT+AGG | 0.459837 | 2_1:+31509544 | Msa0205160:three_prime_UTR |
AGGATTTGAGTGGAGAAGCT+GGG | 0.462030 | 2_1:+31507230 | Msa0205160:CDS |
CGCAGTTAAGTTGGATAGAG+TGG | 0.462681 | 2_1:+31507267 | Msa0205160:CDS |
AAAGCGTAAATATAATTTCA+AGG | 0.466648 | 2_1:+31508242 | Msa0205160:CDS |
TGATCGACTGTATTAACAAC+AGG | 0.467265 | 2_1:-31508177 | None:intergenic |
GCACTATGGAGGATGCTGCT+GGG | 0.467873 | 2_1:+31507338 | Msa0205160:CDS |
AGACCCAATGAATGGTTCTC+TGG | 0.468093 | 2_1:+31508302 | Msa0205160:CDS |
AATAGGGCCCACAATTAACT+TGG | 0.469238 | 2_1:-31508968 | None:intergenic |
TATAGAAATCTTAGACATGA+TGG | 0.469572 | 2_1:+31509650 | Msa0205160:three_prime_UTR |
TGGCACTGACTCTTGCACTA+TGG | 0.471756 | 2_1:+31507324 | Msa0205160:CDS |
GAAACATCCAATCTATTCTC+AGG | 0.477155 | 2_1:-31508558 | None:intergenic |
TTTGTTAAGGTTTGTTTCTG+AGG | 0.484036 | 2_1:-31509108 | None:intergenic |
CACCTGAACATTCCAAGAAA+AGG | 0.485699 | 2_1:+31508367 | Msa0205160:CDS |
AAAGCTTACCCATCTAAAGT+TGG | 0.486677 | 2_1:-31509407 | None:intergenic |
GAATGCCGCCGCAGTTAAGT+TGG | 0.497236 | 2_1:+31507258 | Msa0205160:CDS |
CATTACTTGCTTTACAAACA+AGG | 0.503682 | 2_1:-31509378 | None:intergenic |
TGGATAGAGTGGTTTCGGAA+AGG | 0.503876 | 2_1:+31507278 | Msa0205160:CDS |
ATTTCACGTACGGATGAACT+TGG | 0.508981 | 2_1:+31508759 | Msa0205160:CDS |
GAGAAAAGTATGTTCTCCAT+GGG | 0.509518 | 2_1:-31508670 | None:intergenic |
AACAAATCAAGTTCCAGCTA+TGG | 0.510674 | 2_1:-31508805 | None:intergenic |
AAGAAGAAACTACCCATAGC+TGG | 0.514324 | 2_1:+31508792 | Msa0205160:CDS |
AGCCAGCCCAAGTTAATTGT+GGG | 0.520785 | 2_1:+31508961 | Msa0205160:three_prime_UTR |
TTGTTAAGGTTTGTTTCTGA+GGG | 0.523108 | 2_1:-31509107 | None:intergenic |
CGCTTGGAGTGTAATTAAGC+TGG | 0.523239 | 2_1:-31509286 | None:intergenic |
TTAGAGGTTTATTATATCCA+TGG | 0.524645 | 2_1:+31507126 | Msa0205160:exon |
AAGTTCATAACAAGCTCAGC+AGG | 0.528013 | 2_1:-31509065 | None:intergenic |
GGAGTCAAATATGAGGCAAA+AGG | 0.528193 | 2_1:+31508068 | Msa0205160:CDS |
AATCCAGAGAACCATTCATT+GGG | 0.530099 | 2_1:-31508305 | None:intergenic |
CACTATGGAGGATGCTGCTG+GGG | 0.531939 | 2_1:+31507339 | Msa0205160:CDS |
GCGAGGTATCAATCAATAGT+TGG | 0.532321 | 2_1:+31507304 | Msa0205160:CDS |
ATTAGTATTTATACTCAACT+AGG | 0.533842 | 2_1:+31509528 | Msa0205160:three_prime_UTR |
AGATATCTTACCTTTAACCT+CGG | 0.536941 | 2_1:-31507797 | None:intergenic |
AAGCCAGCCCAAGTTAATTG+TGG | 0.539378 | 2_1:+31508960 | Msa0205160:three_prime_UTR |
ACAAATCAAGTTCCAGCTAT+GGG | 0.540385 | 2_1:-31508804 | None:intergenic |
CTGTAATTGTGAGTGCCGAT+TGG | 0.540957 | 2_1:+31508730 | Msa0205160:CDS |
TGAGAAAAGTATGTTCTCCA+TGG | 0.541750 | 2_1:-31508671 | None:intergenic |
AGTAAGCAGCCGTGCAAGAG+TGG | 0.544946 | 2_1:+31509181 | Msa0205160:three_prime_UTR |
ACGTGAAATCTCTTTCCAAT+CGG | 0.545841 | 2_1:-31508745 | None:intergenic |
TAATTGTGGGCCCTATTCCT+GGG | 0.547307 | 2_1:+31508974 | Msa0205160:three_prime_UTR |
CTTGTTTGTAAAGCAAGTAA+TGG | 0.548303 | 2_1:+31509379 | Msa0205160:three_prime_UTR |
GCTAATGCAATTGCAGAAGA+AGG | 0.548428 | 2_1:+31507982 | Msa0205160:CDS |
TCTTAAAGACCACTCTTGCA+CGG | 0.549177 | 2_1:-31509190 | None:intergenic |
GGAGTCCAACAATCACCGTC+TGG | 0.550831 | 2_1:-31508330 | None:intergenic |
GCAGATGCAGAGGTAGCGCT+TGG | 0.551943 | 2_1:+31509218 | Msa0205160:three_prime_UTR |
CAGATAGTTGAGGATTTGAG+TGG | 0.552151 | 2_1:+31507220 | Msa0205160:CDS |
TAGACGAGTCTGTGGAATGT+GGG | 0.561456 | 2_1:+31507194 | Msa0205160:CDS |
CAACTGGTGACTGTATTCGT+AGG | 0.563107 | 2_1:+31508487 | Msa0205160:CDS |
GGGATGTCAGACCCAATGAA+TGG | 0.563115 | 2_1:+31508294 | Msa0205160:CDS |
TCAGCAAACAGTGATGTCCC+CGG | 0.563331 | 2_1:-31507373 | None:intergenic |
TTGGAAAGAGATTTCACGTA+CGG | 0.566404 | 2_1:+31508749 | Msa0205160:CDS |
TAGCGCTTGGTAGTGCTAAG+AGG | 0.567148 | 2_1:+31509231 | Msa0205160:three_prime_UTR |
AGACGAGTCTGTGGAATGTG+GGG | 0.568309 | 2_1:+31507195 | Msa0205160:CDS |
GAACTTCAACTCAACCTACC+TGG | 0.568866 | 2_1:+31506812 | Msa0205160:five_prime_UTR |
ATTAAAGATCCAATTATCAT+GGG | 0.573083 | 2_1:+31509337 | Msa0205160:three_prime_UTR |
AACTGACGCGAGGGTTTCAG+CGG | 0.574832 | 2_1:-31506727 | None:intergenic |
TCAACGAGGAGTCAAATATG+AGG | 0.576367 | 2_1:+31508061 | Msa0205160:CDS |
AGTTAGGAAAGTTAGTTACA+TGG | 0.577193 | 2_1:+31509560 | Msa0205160:three_prime_UTR |
AGGTATATATCCACAGTTGT+TGG | 0.577757 | 2_1:+31507163 | Msa0205160:CDS |
TAAGAAGCGTGCAGATGCAG+AGG | 0.578058 | 2_1:+31509208 | Msa0205160:three_prime_UTR |
CTGGGGCCGCAGGTCACCCG+GGG | 0.578280 | 2_1:+31507356 | Msa0205160:CDS |
CATGCTGTTGCGTGATGGAA+AGG | 0.580037 | 2_1:+31508032 | Msa0205160:CDS |
TGATGTCCCCGGGTGACCTG+CGG | 0.582580 | 2_1:-31507362 | None:intergenic |
CCATGGAAGAAGTAGAAAAG+AGG | 0.582789 | 2_1:+31507143 | Msa0205160:exon |
GTTAATACAGTCGATCAAGC+TGG | 0.583440 | 2_1:+31508183 | Msa0205160:CDS |
ACATTCCACAGACTCGTCTA+CGG | 0.585735 | 2_1:-31507191 | None:intergenic |
GGCACTCAAATCACTGACCA+AGG | 0.586192 | 2_1:+31508003 | Msa0205160:CDS |
CAGCAAACAGTGATGTCCCC+GGG | 0.587981 | 2_1:-31507372 | None:intergenic |
TGGTGTATCCAACTTTAGAT+GGG | 0.589968 | 2_1:+31509399 | Msa0205160:three_prime_UTR |
AAGATCCAATTATCATGGGA+AGG | 0.597025 | 2_1:+31509341 | Msa0205160:three_prime_UTR |
AACTGGTGACTGTATTCGTA+GGG | 0.601493 | 2_1:+31508488 | Msa0205160:CDS |
AGCCACATGCTGTTGCGTGA+TGG | 0.602204 | 2_1:+31508027 | Msa0205160:CDS |
TTCCATCACGCAACAGCATG+TGG | 0.602267 | 2_1:-31508029 | None:intergenic |
CAGAAGACAGATGTAGACAT+TGG | 0.604824 | 2_1:+31508528 | Msa0205160:CDS |
TATCAACAATACTGGAGTTG+CGG | 0.605835 | 2_1:-31507453 | None:intergenic |
CACTGACTCTTGCACTATGG+AGG | 0.606778 | 2_1:+31507327 | Msa0205160:CDS |
CTATACACGAATTGGAATGA+CGG | 0.608885 | 2_1:+31507421 | Msa0205160:CDS |
GAGACTCCTAACAAACCTCC+TGG | 0.609889 | 2_1:+31509023 | Msa0205160:three_prime_UTR |
GTGACTTGCATTGTACAGAC+TGG | 0.613441 | 2_1:+31508844 | Msa0205160:three_prime_UTR |
GGAGCAAGTAATAGCTGACA+AGG | 0.615459 | 2_1:+31507657 | Msa0205160:CDS |
GTCATCATCAAAGTGATCGA+AGG | 0.615503 | 2_1:-31508394 | None:intergenic |
ATAGGGCCCACAATTAACTT+GGG | 0.615525 | 2_1:-31508967 | None:intergenic |
GCATTCTCATCTATATAACC+AGG | 0.616725 | 2_1:-31509041 | None:intergenic |
AGAGCAAGAATGCGTTGACA+AGG | 0.619110 | 2_1:+31508095 | Msa0205160:CDS |
GAGTGATGAAACTGACGCGA+GGG | 0.624589 | 2_1:-31506736 | None:intergenic |
GGTTCTCTGGATTCTCCAGA+CGG | 0.624667 | 2_1:+31508315 | Msa0205160:CDS |
GCTATCTTCACTTCAGTGTG+TGG | 0.627339 | 2_1:+31508638 | Msa0205160:CDS |
GAACAATCTGATGTACGCGA+GGG | 0.634786 | 2_1:+31507709 | Msa0205160:CDS |
AAAGTTAGTTACATGGTCAG+AGG | 0.636965 | 2_1:+31509567 | Msa0205160:three_prime_UTR |
TACGGTTTCACCAACAACTG+TGG | 0.637008 | 2_1:-31507173 | None:intergenic |
GTAGACGAGTCTGTGGAATG+TGG | 0.638760 | 2_1:+31507193 | Msa0205160:CDS |
AGTTGAAAAGTGTAATGCAA+TGG | 0.639577 | 2_1:+31507636 | Msa0205160:CDS |
AACAATGAACCAAACTGCCG+AGG | 0.646442 | 2_1:+31507780 | Msa0205160:CDS |
TGAACAATCTGATGTACGCG+AGG | 0.646674 | 2_1:+31507708 | Msa0205160:CDS |
ATGACTTCAAAATTCAAACT+GGG | 0.650140 | 2_1:+31508412 | Msa0205160:CDS |
TGAGGGAACAGATTTGAACT+CGG | 0.650512 | 2_1:-31509090 | None:intergenic |
AACAATCTGATGTACGCGAG+GGG | 0.651223 | 2_1:+31507710 | Msa0205160:CDS |
TGAAACCGTAGACGAGTCTG+TGG | 0.661034 | 2_1:+31507186 | Msa0205160:CDS |
GACGAGTCTGTGGAATGTGG+GGG | 0.663276 | 2_1:+31507196 | Msa0205160:CDS |
TCTATCCAACTTAACTGCGG+CGG | 0.665386 | 2_1:-31507263 | None:intergenic |
CACTCTATCCAACTTAACTG+CGG | 0.673432 | 2_1:-31507266 | None:intergenic |
ACAGACTGGGTCATTGACAA+TGG | 0.673767 | 2_1:+31508858 | Msa0205160:three_prime_UTR |
TGAGTGATGAAACTGACGCG+AGG | 0.674263 | 2_1:-31506737 | None:intergenic |
AGAAAAGTATGTTCTCCATG+GGG | 0.678685 | 2_1:-31508669 | None:intergenic |
ATTGTACATGAAGTTGTCTG+TGG | 0.678962 | 2_1:+31507607 | Msa0205160:CDS |
TTCTCATCTATATAACCAGG+AGG | 0.679754 | 2_1:-31509038 | None:intergenic |
CGGATGAACTTGGCACCATG+AGG | 0.680302 | 2_1:+31508769 | Msa0205160:CDS |
TTAGAGTAATGTAACCAGGT+AGG | 0.685702 | 2_1:-31506826 | None:intergenic |
GCACTCAAATCACTGACCAA+GGG | 0.687112 | 2_1:+31508004 | Msa0205160:CDS |
TGGTTTCGGAAAGGGAAGCG+AGG | 0.690904 | 2_1:+31507287 | Msa0205160:CDS |
TGACTTGCATTGTACAGACT+GGG | 0.698935 | 2_1:+31508845 | Msa0205160:three_prime_UTR |
ATAGCTGACAAGGATGTGAG+TGG | 0.749474 | 2_1:+31507667 | Msa0205160:CDS |
ATAGATGTTGAAGATCAACA+AGG | 0.760784 | 2_1:+31507742 | Msa0205160:CDS |
GCTGGTATCTATTGACCACG+AGG | 0.766728 | 2_1:+31507948 | Msa0205160:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTATTTTTTAAATAA+AGG | + | chr2_1:31509701-31509720 | Msa0205160:three_prime_UTR | 0.0% |
!!! | TTTTAGAAAATAATTGCATT+AGG | + | chr2_1:31507006-31507025 | Msa0205160:intron | 15.0% |
!! | TTTAGAAAATAATTGCATTA+GGG | + | chr2_1:31507007-31507026 | Msa0205160:intron | 15.0% |
!!! | TAATATTTTTGTTGATATCA+TGG | + | chr2_1:31507522-31507541 | Msa0205160:CDS | 15.0% |
!! | CTTTGATTATTTAAATTTCT+AGG | - | chr2_1:31508210-31508229 | None:intergenic | 15.0% |
!! | AAAAAGATATGAATATTTCA+TGG | - | chr2_1:31509677-31509696 | None:intergenic | 15.0% |
!! | TAGATTTAATTAATTGAGCT+TGG | + | chr2_1:31507037-31507056 | Msa0205160:intron | 20.0% |
!!! | AGATATAAAGAAAGTTTTAG+AGG | + | chr2_1:31507110-31507129 | Msa0205160:intron | 20.0% |
!! | ATCAACAAAAATATTAGAGT+TGG | - | chr2_1:31507518-31507537 | None:intergenic | 20.0% |
!! | AAAGCGTAAATATAATTTCA+AGG | + | chr2_1:31508242-31508261 | Msa0205160:CDS | 20.0% |
!! | ATTAAAGATCCAATTATCAT+GGG | + | chr2_1:31509337-31509356 | Msa0205160:three_prime_UTR | 20.0% |
!! | ATTAGTATTTATACTCAACT+AGG | + | chr2_1:31509528-31509547 | Msa0205160:three_prime_UTR | 20.0% |
!!! | CTCTAACTTTTTTTTCACTT+TGG | + | chr2_1:31506843-31506862 | Msa0205160:intron | 25.0% |
! | TAACTAACACAGAAAACAAA+GGG | - | chr2_1:31506929-31506948 | None:intergenic | 25.0% |
!!! | TTTCTAAAATCAACCTAGTT+TGG | - | chr2_1:31506995-31507014 | None:intergenic | 25.0% |
! | TTAGAGGTTTATTATATCCA+TGG | + | chr2_1:31507126-31507145 | Msa0205160:exon | 25.0% |
! | ATTCAATACTATACACGAAT+TGG | + | chr2_1:31507413-31507432 | Msa0205160:CDS | 25.0% |
!! | ATTGAGGAAATGTCAAATTT+TGG | + | chr2_1:31507475-31507494 | Msa0205160:CDS | 25.0% |
!! | TTGAGGAAATGTCAAATTTT+GGG | + | chr2_1:31507476-31507495 | Msa0205160:CDS | 25.0% |
! | ATGACTTCAAAATTCAAACT+GGG | + | chr2_1:31508412-31508431 | Msa0205160:CDS | 25.0% |
! | CAAACCTTAACAAAATGTTT+AGG | + | chr2_1:31509117-31509136 | Msa0205160:three_prime_UTR | 25.0% |
! | GATTAAAGATCCAATTATCA+TGG | + | chr2_1:31509336-31509355 | Msa0205160:three_prime_UTR | 25.0% |
!!! | ACCTTTTTTGCAAATTACTT+TGG | + | chr2_1:31509436-31509455 | Msa0205160:three_prime_UTR | 25.0% |
!! | ACCAAAGTAATTTGCAAAAA+AGG | - | chr2_1:31509440-31509459 | None:intergenic | 25.0% |
!! | TTTTGCAAATTACTTTGGTA+AGG | + | chr2_1:31509441-31509460 | Msa0205160:three_prime_UTR | 25.0% |
! | ACTTGATCAAATGAGAAAAT+TGG | + | chr2_1:31509488-31509507 | Msa0205160:three_prime_UTR | 25.0% |
! | CTAATTTCTACTAACATAGT+TGG | + | chr2_1:31509595-31509614 | Msa0205160:three_prime_UTR | 25.0% |
! | TATAGAAATCTTAGACATGA+TGG | + | chr2_1:31509650-31509669 | Msa0205160:three_prime_UTR | 25.0% |
AAGTTCATTTCACAGAGAAT+TGG | - | chr2_1:31506798-31506817 | None:intergenic | 30.0% | |
AAAGTTAGAGTAATGTAACC+AGG | - | chr2_1:31506833-31506852 | None:intergenic | 30.0% | |
CTAACTAACACAGAAAACAA+AGG | - | chr2_1:31506930-31506949 | None:intergenic | 30.0% | |
CAAAAATTACTTGCCAAACT+AGG | + | chr2_1:31506979-31506998 | Msa0205160:intron | 30.0% | |
TTCCTCAATATCAACAATAC+TGG | - | chr2_1:31507464-31507483 | None:intergenic | 30.0% | |
TCAACTTTATCGTTCACAAT+TGG | - | chr2_1:31507574-31507593 | None:intergenic | 30.0% | |
ATTGTGAACGATAAAGTTGA+TGG | + | chr2_1:31507574-31507593 | Msa0205160:CDS | 30.0% | |
! | AGTTGAAAAGTGTAATGCAA+TGG | + | chr2_1:31507636-31507655 | Msa0205160:CDS | 30.0% |
ATAGATGTTGAAGATCAACA+AGG | + | chr2_1:31507742-31507761 | Msa0205160:CDS | 30.0% | |
AGATATCTTACCTTTAACCT+CGG | - | chr2_1:31507800-31507819 | None:intergenic | 30.0% | |
!!! | CAATTCATTTTTTGTTGACG+AGG | + | chr2_1:31508119-31508138 | Msa0205160:CDS | 30.0% |
GATGACTTCAAAATTCAAAC+TGG | + | chr2_1:31508411-31508430 | Msa0205160:CDS | 30.0% | |
AGTTGTAAACGATGAATTTG+TGG | - | chr2_1:31508472-31508491 | None:intergenic | 30.0% | |
ACAAATTCATCGTTTACAAC+TGG | + | chr2_1:31508471-31508490 | Msa0205160:CDS | 30.0% | |
! | TGTTTTTCCTGAGAATAGAT+TGG | + | chr2_1:31508551-31508570 | Msa0205160:CDS | 30.0% |
!!! | GAATTTTTTACCCAGGAATA+GGG | - | chr2_1:31508987-31509006 | None:intergenic | 30.0% |
!!! | AGAATTTTTTACCCAGGAAT+AGG | - | chr2_1:31508988-31509007 | None:intergenic | 30.0% |
!!! | GCTTTTAGAATTTTTTACCC+AGG | - | chr2_1:31508994-31509013 | None:intergenic | 30.0% |
!! | TTGTTAAGGTTTGTTTCTGA+GGG | - | chr2_1:31509110-31509129 | None:intergenic | 30.0% |
!! | TTTGTTAAGGTTTGTTTCTG+AGG | - | chr2_1:31509111-31509130 | None:intergenic | 30.0% |
! | AACGCCTAAACATTTTGTTA+AGG | - | chr2_1:31509124-31509143 | None:intergenic | 30.0% |
! | AACAAAATGTTTAGGCGTTT+TGG | + | chr2_1:31509125-31509144 | Msa0205160:three_prime_UTR | 30.0% |
GCTAAGAGGTTCAAAATATT+TGG | + | chr2_1:31509245-31509264 | Msa0205160:three_prime_UTR | 30.0% | |
CATTACTTGCTTTACAAACA+AGG | - | chr2_1:31509381-31509400 | None:intergenic | 30.0% | |
CTTGTTTGTAAAGCAAGTAA+TGG | + | chr2_1:31509379-31509398 | Msa0205160:three_prime_UTR | 30.0% | |
AGTTAGGAAAGTTAGTTACA+TGG | + | chr2_1:31509560-31509579 | Msa0205160:three_prime_UTR | 30.0% | |
CATTCTCATTCGCAATCTTT+CGG | + | chr2_1:31506764-31506783 | Msa0205160:five_prime_UTR | 35.0% | |
TTAGAGTAATGTAACCAGGT+AGG | - | chr2_1:31506829-31506848 | None:intergenic | 35.0% | |
AGGTATATATCCACAGTTGT+TGG | + | chr2_1:31507163-31507182 | Msa0205160:CDS | 35.0% | |
! | TAAGTTGGATAGAGTGGTTT+CGG | + | chr2_1:31507273-31507292 | Msa0205160:CDS | 35.0% |
CTATACACGAATTGGAATGA+CGG | + | chr2_1:31507421-31507440 | Msa0205160:CDS | 35.0% | |
TATCAACAATACTGGAGTTG+CGG | - | chr2_1:31507456-31507475 | None:intergenic | 35.0% | |
CTCCAGTATTGTTGATATTG+AGG | + | chr2_1:31507459-31507478 | Msa0205160:CDS | 35.0% | |
ATTGTACATGAAGTTGTCTG+TGG | + | chr2_1:31507607-31507626 | Msa0205160:CDS | 35.0% | |
AAGATATCTGCTGATCTCAT+TGG | + | chr2_1:31507811-31507830 | Msa0205160:intron | 35.0% | |
! | CTTTCTTTCAGCTTAACTTG+TGG | + | chr2_1:31507846-31507865 | Msa0205160:intron | 35.0% |
! | TAGCATCAAAATTTTCCTCG+TGG | - | chr2_1:31507966-31507985 | None:intergenic | 35.0% |
TGATCGACTGTATTAACAAC+AGG | - | chr2_1:31508180-31508199 | None:intergenic | 35.0% | |
ATCCAGCAAAGAAGGAAAAA+GGG | + | chr2_1:31508274-31508293 | Msa0205160:CDS | 35.0% | |
AATCCAGAGAACCATTCATT+GGG | - | chr2_1:31508308-31508327 | None:intergenic | 35.0% | |
GAAACATCCAATCTATTCTC+AGG | - | chr2_1:31508561-31508580 | None:intergenic | 35.0% | |
! | TCATCATGCTCAACAGTTTT+AGG | - | chr2_1:31508585-31508604 | None:intergenic | 35.0% |
! | AGAAAAGTATGTTCTCCATG+GGG | - | chr2_1:31508672-31508691 | None:intergenic | 35.0% |
! | GAGAAAAGTATGTTCTCCAT+GGG | - | chr2_1:31508673-31508692 | None:intergenic | 35.0% |
! | TGAGAAAAGTATGTTCTCCA+TGG | - | chr2_1:31508674-31508693 | None:intergenic | 35.0% |
! | GGAGAACATACTTTTCTCAA+TGG | + | chr2_1:31508675-31508694 | Msa0205160:CDS | 35.0% |
! | CATACTTTTCTCAATGGCAT+AGG | + | chr2_1:31508681-31508700 | Msa0205160:CDS | 35.0% |
ACGTGAAATCTCTTTCCAAT+CGG | - | chr2_1:31508748-31508767 | None:intergenic | 35.0% | |
TTGGAAAGAGATTTCACGTA+CGG | + | chr2_1:31508749-31508768 | Msa0205160:CDS | 35.0% | |
ACAAATCAAGTTCCAGCTAT+GGG | - | chr2_1:31508807-31508826 | None:intergenic | 35.0% | |
AACAAATCAAGTTCCAGCTA+TGG | - | chr2_1:31508808-31508827 | None:intergenic | 35.0% | |
!!! | TTTTTCTGGTTTTTCGGCAA+TGG | - | chr2_1:31508909-31508928 | None:intergenic | 35.0% |
ATTGCCGAAAAACCAGAAAA+AGG | + | chr2_1:31508908-31508927 | Msa0205160:three_prime_UTR | 35.0% | |
!!! | TCGTCCTTTTTCTGGTTTTT+CGG | - | chr2_1:31508915-31508934 | None:intergenic | 35.0% |
! | ATATAACCAGGAGGTTTGTT+AGG | - | chr2_1:31509032-31509051 | None:intergenic | 35.0% |
TTCTCATCTATATAACCAGG+AGG | - | chr2_1:31509041-31509060 | None:intergenic | 35.0% | |
GCATTCTCATCTATATAACC+AGG | - | chr2_1:31509044-31509063 | None:intergenic | 35.0% | |
AAGATCCAATTATCATGGGA+AGG | + | chr2_1:31509341-31509360 | Msa0205160:three_prime_UTR | 35.0% | |
ATGGTGTATCCAACTTTAGA+TGG | + | chr2_1:31509398-31509417 | Msa0205160:three_prime_UTR | 35.0% | |
TGGTGTATCCAACTTTAGAT+GGG | + | chr2_1:31509399-31509418 | Msa0205160:three_prime_UTR | 35.0% | |
! | AAAGCTTACCCATCTAAAGT+TGG | - | chr2_1:31509410-31509429 | None:intergenic | 35.0% |
AAAGTTAGTTACATGGTCAG+AGG | + | chr2_1:31509567-31509586 | Msa0205160:three_prime_UTR | 35.0% | |
AGGGAGAAGCAAGAAACAAA+GGG | - | chr2_1:31506910-31506929 | None:intergenic | 40.0% | |
AAGGGAGAAGCAAGAAACAA+AGG | - | chr2_1:31506911-31506930 | None:intergenic | 40.0% | |
! | CCTCTTTTCTACTTCTTCCA+TGG | - | chr2_1:31507146-31507165 | None:intergenic | 40.0% |
CCATGGAAGAAGTAGAAAAG+AGG | + | chr2_1:31507143-31507162 | Msa0205160:exon | 40.0% | |
CAGATAGTTGAGGATTTGAG+TGG | + | chr2_1:31507220-31507239 | Msa0205160:CDS | 40.0% | |
CACTCTATCCAACTTAACTG+CGG | - | chr2_1:31507269-31507288 | None:intergenic | 40.0% | |
! | GCGAGGTATCAATCAATAGT+TGG | + | chr2_1:31507304-31507323 | Msa0205160:CDS | 40.0% |
GCTAATGCAATTGCAGAAGA+AGG | + | chr2_1:31507982-31508001 | Msa0205160:CDS | 40.0% | |
TGGAAAGGAAAAACTCAACG+AGG | + | chr2_1:31508047-31508066 | Msa0205160:CDS | 40.0% | |
TCAACGAGGAGTCAAATATG+AGG | + | chr2_1:31508061-31508080 | Msa0205160:CDS | 40.0% | |
GGAGTCAAATATGAGGCAAA+AGG | + | chr2_1:31508068-31508087 | Msa0205160:CDS | 40.0% | |
TGACGAGGAACAAGATTTGT+TGG | + | chr2_1:31508134-31508153 | Msa0205160:CDS | 40.0% | |
GTTAATACAGTCGATCAAGC+TGG | + | chr2_1:31508183-31508202 | Msa0205160:CDS | 40.0% | |
TACTATGCATCCAGCAAAGA+AGG | + | chr2_1:31508266-31508285 | Msa0205160:CDS | 40.0% | |
CATCCAGCAAAGAAGGAAAA+AGG | + | chr2_1:31508273-31508292 | Msa0205160:CDS | 40.0% | |
! | ATCCCTTTTTCCTTCTTTGC+TGG | - | chr2_1:31508279-31508298 | None:intergenic | 40.0% |
GAATCCAGAGAACCATTCAT+TGG | - | chr2_1:31508309-31508328 | None:intergenic | 40.0% | |
CACCTGAACATTCCAAGAAA+AGG | + | chr2_1:31508367-31508386 | Msa0205160:CDS | 40.0% | |
! | CTCCTTTTCTTGGAATGTTC+AGG | - | chr2_1:31508372-31508391 | None:intergenic | 40.0% |
GTCATCATCAAAGTGATCGA+AGG | - | chr2_1:31508397-31508416 | None:intergenic | 40.0% | |
AACTGGTGACTGTATTCGTA+GGG | + | chr2_1:31508488-31508507 | Msa0205160:CDS | 40.0% | |
CAGAAGACAGATGTAGACAT+TGG | + | chr2_1:31508528-31508547 | Msa0205160:CDS | 40.0% | |
ATTTCACGTACGGATGAACT+TGG | + | chr2_1:31508759-31508778 | Msa0205160:CDS | 40.0% | |
AAGAAGAAACTACCCATAGC+TGG | + | chr2_1:31508792-31508811 | Msa0205160:CDS | 40.0% | |
! | TGACTTGCATTGTACAGACT+GGG | + | chr2_1:31508845-31508864 | Msa0205160:three_prime_UTR | 40.0% |
! | CAAGTTGTTCGTCCTTTTTC+TGG | - | chr2_1:31508923-31508942 | None:intergenic | 40.0% |
ATAGGGCCCACAATTAACTT+GGG | - | chr2_1:31508970-31508989 | None:intergenic | 40.0% | |
AATAGGGCCCACAATTAACT+TGG | - | chr2_1:31508971-31508990 | None:intergenic | 40.0% | |
AAGTTCATAACAAGCTCAGC+AGG | - | chr2_1:31509068-31509087 | None:intergenic | 40.0% | |
TGAGGGAACAGATTTGAACT+CGG | - | chr2_1:31509093-31509112 | None:intergenic | 40.0% | |
!!! | TAGGCGTTTTGGAGAACTAA+AGG | + | chr2_1:31509136-31509155 | Msa0205160:three_prime_UTR | 40.0% |
TCTTAAAGACCACTCTTGCA+CGG | - | chr2_1:31509193-31509212 | None:intergenic | 40.0% | |
GAACTTCAACTCAACCTACC+TGG | + | chr2_1:31506812-31506831 | Msa0205160:five_prime_UTR | 45.0% | |
TACGGTTTCACCAACAACTG+TGG | - | chr2_1:31507176-31507195 | None:intergenic | 45.0% | |
ACATTCCACAGACTCGTCTA+CGG | - | chr2_1:31507194-31507213 | None:intergenic | 45.0% | |
TAGACGAGTCTGTGGAATGT+GGG | + | chr2_1:31507194-31507213 | Msa0205160:CDS | 45.0% | |
AGGATTTGAGTGGAGAAGCT+GGG | + | chr2_1:31507230-31507249 | Msa0205160:CDS | 45.0% | |
TCTATCCAACTTAACTGCGG+CGG | - | chr2_1:31507266-31507285 | None:intergenic | 45.0% | |
!! | CGCAGTTAAGTTGGATAGAG+TGG | + | chr2_1:31507267-31507286 | Msa0205160:CDS | 45.0% |
TGGATAGAGTGGTTTCGGAA+AGG | + | chr2_1:31507278-31507297 | Msa0205160:CDS | 45.0% | |
GGATAGAGTGGTTTCGGAAA+GGG | + | chr2_1:31507279-31507298 | Msa0205160:CDS | 45.0% | |
GGAGCAAGTAATAGCTGACA+AGG | + | chr2_1:31507657-31507676 | Msa0205160:CDS | 45.0% | |
ATAGCTGACAAGGATGTGAG+TGG | + | chr2_1:31507667-31507686 | Msa0205160:CDS | 45.0% | |
TGAACAATCTGATGTACGCG+AGG | + | chr2_1:31507708-31507727 | Msa0205160:CDS | 45.0% | |
GAACAATCTGATGTACGCGA+GGG | + | chr2_1:31507709-31507728 | Msa0205160:CDS | 45.0% | |
AACAATCTGATGTACGCGAG+GGG | + | chr2_1:31507710-31507729 | Msa0205160:CDS | 45.0% | |
AACAATGAACCAAACTGCCG+AGG | + | chr2_1:31507780-31507799 | Msa0205160:CDS | 45.0% | |
AACCAAACTGCCGAGGTTAA+AGG | + | chr2_1:31507787-31507806 | Msa0205160:CDS | 45.0% | |
TACCTTTAACCTCGGCAGTT+TGG | - | chr2_1:31507792-31507811 | None:intergenic | 45.0% | |
TTCTGTTTGTGCAGGATTGC+TGG | + | chr2_1:31507930-31507949 | Msa0205160:intron | 45.0% | |
GCACTCAAATCACTGACCAA+GGG | + | chr2_1:31508004-31508023 | Msa0205160:CDS | 45.0% | |
! | AGAGCAAGAATGCGTTGACA+AGG | + | chr2_1:31508095-31508114 | Msa0205160:CDS | 45.0% |
AGACCCAATGAATGGTTCTC+TGG | + | chr2_1:31508302-31508321 | Msa0205160:CDS | 45.0% | |
ATTCTCCAGACGGTGATTGT+TGG | + | chr2_1:31508325-31508344 | Msa0205160:CDS | 45.0% | |
TTGTTGGACTCCAGTTCATC+TGG | + | chr2_1:31508341-31508360 | Msa0205160:CDS | 45.0% | |
CAACTGGTGACTGTATTCGT+AGG | + | chr2_1:31508487-31508506 | Msa0205160:CDS | 45.0% | |
GCTATCTTCACTTCAGTGTG+TGG | + | chr2_1:31508638-31508657 | Msa0205160:CDS | 45.0% | |
!! | CTGTAATTGTGAGTGCCGAT+TGG | + | chr2_1:31508730-31508749 | Msa0205160:CDS | 45.0% |
GGGTAGTTTCTTCTTCCTCA+TGG | - | chr2_1:31508787-31508806 | None:intergenic | 45.0% | |
! | GTGACTTGCATTGTACAGAC+TGG | + | chr2_1:31508844-31508863 | Msa0205160:three_prime_UTR | 45.0% |
ACAGACTGGGTCATTGACAA+TGG | + | chr2_1:31508858-31508877 | Msa0205160:three_prime_UTR | 45.0% | |
!! | CAATTAACTTGGGCTGGCTT+TGG | - | chr2_1:31508960-31508979 | None:intergenic | 45.0% |
AAGCCAGCCCAAGTTAATTG+TGG | + | chr2_1:31508960-31508979 | Msa0205160:three_prime_UTR | 45.0% | |
AGCCAGCCCAAGTTAATTGT+GGG | + | chr2_1:31508961-31508980 | Msa0205160:three_prime_UTR | 45.0% | |
TTAATTGTGGGCCCTATTCC+TGG | + | chr2_1:31508973-31508992 | Msa0205160:three_prime_UTR | 45.0% | |
TAATTGTGGGCCCTATTCCT+GGG | + | chr2_1:31508974-31508993 | Msa0205160:three_prime_UTR | 45.0% | |
CGCTTGGAGTGTAATTAAGC+TGG | - | chr2_1:31509289-31509308 | None:intergenic | 45.0% | |
!! | CTCAAAGCTTTGAACACGCT+TGG | - | chr2_1:31509305-31509324 | None:intergenic | 45.0% |
AGCAGCCTTCCCATGATAAT+TGG | - | chr2_1:31509349-31509368 | None:intergenic | 45.0% | |
AACTAGGACTGTGCTGAGTT+AGG | + | chr2_1:31509544-31509563 | Msa0205160:three_prime_UTR | 45.0% | |
GAGTGATGAAACTGACGCGA+GGG | - | chr2_1:31506739-31506758 | None:intergenic | 50.0% | |
TGAGTGATGAAACTGACGCG+AGG | - | chr2_1:31506740-31506759 | None:intergenic | 50.0% | |
TGAAACCGTAGACGAGTCTG+TGG | + | chr2_1:31507186-31507205 | Msa0205160:CDS | 50.0% | |
GTAGACGAGTCTGTGGAATG+TGG | + | chr2_1:31507193-31507212 | Msa0205160:CDS | 50.0% | |
AGACGAGTCTGTGGAATGTG+GGG | + | chr2_1:31507195-31507214 | Msa0205160:CDS | 50.0% | |
ATGTGGGGGTCAGATAGTTG+AGG | + | chr2_1:31507210-31507229 | Msa0205160:CDS | 50.0% | |
GAGGATTTGAGTGGAGAAGC+TGG | + | chr2_1:31507229-31507248 | Msa0205160:CDS | 50.0% | |
!! | TGGCACTGACTCTTGCACTA+TGG | + | chr2_1:31507324-31507343 | Msa0205160:CDS | 50.0% |
!! | CACTGACTCTTGCACTATGG+AGG | + | chr2_1:31507327-31507346 | Msa0205160:CDS | 50.0% |
TCAGCAAACAGTGATGTCCC+CGG | - | chr2_1:31507376-31507395 | None:intergenic | 50.0% | |
GCTTGCAGTTCTGTTTGTGC+AGG | + | chr2_1:31507922-31507941 | Msa0205160:intron | 50.0% | |
GCTGGTATCTATTGACCACG+AGG | + | chr2_1:31507948-31507967 | Msa0205160:CDS | 50.0% | |
GGCACTCAAATCACTGACCA+AGG | + | chr2_1:31508003-31508022 | Msa0205160:CDS | 50.0% | |
TTCCATCACGCAACAGCATG+TGG | - | chr2_1:31508032-31508051 | None:intergenic | 50.0% | |
! | CATGCTGTTGCGTGATGGAA+AGG | + | chr2_1:31508032-31508051 | Msa0205160:CDS | 50.0% |
GGGATGTCAGACCCAATGAA+TGG | + | chr2_1:31508294-31508313 | Msa0205160:CDS | 50.0% | |
GGTTCTCTGGATTCTCCAGA+CGG | + | chr2_1:31508315-31508334 | Msa0205160:CDS | 50.0% | |
TCAGGTGCAACCAGATGAAC+TGG | - | chr2_1:31508354-31508373 | None:intergenic | 50.0% | |
!!! | ATCGAAGGCGCTCCTTTTCT+TGG | - | chr2_1:31508382-31508401 | None:intergenic | 50.0% |
TGTGTGGCACAAAAACCCCA+TGG | + | chr2_1:31508654-31508673 | Msa0205160:CDS | 50.0% | |
TTCGGCAATGGTTGTTGCAC+TGG | - | chr2_1:31508897-31508916 | None:intergenic | 50.0% | |
!! | TTAACTTGGGCTGGCTTTGG+TGG | - | chr2_1:31508957-31508976 | None:intergenic | 50.0% |
GAGACTCCTAACAAACCTCC+TGG | + | chr2_1:31509023-31509042 | Msa0205160:three_prime_UTR | 50.0% | |
! | TAAGAAGCGTGCAGATGCAG+AGG | + | chr2_1:31509208-31509227 | Msa0205160:three_prime_UTR | 50.0% |
!! | TAGCGCTTGGTAGTGCTAAG+AGG | + | chr2_1:31509231-31509250 | Msa0205160:three_prime_UTR | 50.0% |
AACTGACGCGAGGGTTTCAG+CGG | - | chr2_1:31506730-31506749 | None:intergenic | 55.0% | |
GACGAGTCTGTGGAATGTGG+GGG | + | chr2_1:31507196-31507215 | Msa0205160:CDS | 55.0% | |
GAATGCCGCCGCAGTTAAGT+TGG | + | chr2_1:31507258-31507277 | Msa0205160:CDS | 55.0% | |
TGGTTTCGGAAAGGGAAGCG+AGG | + | chr2_1:31507287-31507306 | Msa0205160:CDS | 55.0% | |
TGCACTATGGAGGATGCTGC+TGG | + | chr2_1:31507337-31507356 | Msa0205160:CDS | 55.0% | |
GCACTATGGAGGATGCTGCT+GGG | + | chr2_1:31507338-31507357 | Msa0205160:CDS | 55.0% | |
CACTATGGAGGATGCTGCTG+GGG | + | chr2_1:31507339-31507358 | Msa0205160:CDS | 55.0% | |
CAGCAAACAGTGATGTCCCC+GGG | - | chr2_1:31507375-31507394 | None:intergenic | 55.0% | |
AGCCACATGCTGTTGCGTGA+TGG | + | chr2_1:31508027-31508046 | Msa0205160:CDS | 55.0% | |
GGAGTCCAACAATCACCGTC+TGG | - | chr2_1:31508333-31508352 | None:intergenic | 55.0% | |
CGGATGAACTTGGCACCATG+AGG | + | chr2_1:31508769-31508788 | Msa0205160:CDS | 55.0% | |
! | GGCCCACAATTAACTTGGGC+TGG | - | chr2_1:31508966-31508985 | None:intergenic | 55.0% |
AGTAAGCAGCCGTGCAAGAG+TGG | + | chr2_1:31509181-31509200 | Msa0205160:three_prime_UTR | 55.0% | |
GCAACAGCATGTGGCTCCCT+TGG | - | chr2_1:31508023-31508042 | None:intergenic | 60.0% | |
GCAGATGCAGAGGTAGCGCT+TGG | + | chr2_1:31509218-31509237 | Msa0205160:three_prime_UTR | 60.0% | |
TGATGTCCCCGGGTGACCTG+CGG | - | chr2_1:31507365-31507384 | None:intergenic | 65.0% | |
GAGGATGCTGCTGGGGCCGC+AGG | + | chr2_1:31507346-31507365 | Msa0205160:CDS | 75.0% | |
TGCTGGGGCCGCAGGTCACC+CGG | + | chr2_1:31507354-31507373 | Msa0205160:CDS | 75.0% | |
! | GCTGGGGCCGCAGGTCACCC+GGG | + | chr2_1:31507355-31507374 | Msa0205160:CDS | 80.0% |
! | CTGGGGCCGCAGGTCACCCG+GGG | + | chr2_1:31507356-31507375 | Msa0205160:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 31506713 | 31509734 | 31506713 | ID=Msa0205160;Name=Msa0205160 |
chr2_1 | mRNA | 31506713 | 31509734 | 31506713 | ID=Msa0205160-mRNA-1;Parent=Msa0205160;Name=Msa0205160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=154|1|1|1|0.5|0.33|3|913|513 |
chr2_1 | exon | 31506713 | 31506833 | 31506713 | ID=Msa0205160-mRNA-1:exon:11070;Parent=Msa0205160-mRNA-1 |
chr2_1 | exon | 31507112 | 31507808 | 31507112 | ID=Msa0205160-mRNA-1:exon:11071;Parent=Msa0205160-mRNA-1 |
chr2_1 | exon | 31507944 | 31509734 | 31507944 | ID=Msa0205160-mRNA-1:exon:11072;Parent=Msa0205160-mRNA-1 |
chr2_1 | five_prime_UTR | 31506713 | 31506833 | 31506713 | ID=Msa0205160-mRNA-1:five_prime_utr;Parent=Msa0205160-mRNA-1 |
chr2_1 | five_prime_UTR | 31507112 | 31507144 | 31507112 | ID=Msa0205160-mRNA-1:five_prime_utr;Parent=Msa0205160-mRNA-1 |
chr2_1 | CDS | 31507145 | 31507808 | 31507145 | ID=Msa0205160-mRNA-1:cds;Parent=Msa0205160-mRNA-1 |
chr2_1 | CDS | 31507944 | 31508821 | 31507944 | ID=Msa0205160-mRNA-1:cds;Parent=Msa0205160-mRNA-1 |
chr2_1 | three_prime_UTR | 31508822 | 31509734 | 31508822 | ID=Msa0205160-mRNA-1:three_prime_utr;Parent=Msa0205160-mRNA-1 |
Gene Sequence |
Protein sequence |