AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254770 MtrunA17_Chr8g0372381 93.522 494 24 2 2 495 3 488 0.0 944
Msa1254770 MtrunA17_Chr2g0328781 54.603 478 212 1 8 485 20 492 0.0 564
Msa1254770 MtrunA17_Chr4g0032441 54.721 466 206 1 12 477 9 469 3.55e-178 509
Msa1254770 MtrunA17_Chr3g0124811 47.170 477 244 1 5 481 15 483 9.62e-161 464
Msa1254770 MtrunA17_Chr8g0384741 46.377 483 247 2 12 494 73 543 7.69e-153 446
Msa1254770 MtrunA17_Chr1g0159811 48.418 411 204 1 12 422 20 422 2.75e-137 405
Msa1254770 MtrunA17_Chr3g0129271 80.711 197 33 1 174 370 30 221 2.79e-107 320
Msa1254770 MtrunA17_Chr4g0009161 75.893 112 21 2 174 284 115 221 1.19e-47 164
Msa1254770 MtrunA17_Chr2g0294411 28.692 474 304 9 7 466 87 540 2.78e-47 172
Msa1254770 MtrunA17_Chr4g0059521 28.140 430 281 10 30 447 74 487 4.57e-37 142
Msa1254770 MtrunA17_Chr3g0118081 28.341 434 283 10 24 445 98 515 1.08e-36 142
Msa1254770 MtrunA17_Chr3g0118121 28.281 442 289 10 16 445 60 485 5.23e-36 139
Msa1254770 MtrunA17_Chr4g0059221 27.857 420 247 12 61 446 138 535 2.42e-34 135
Msa1254770 MtrunA17_Chr8g0365221 27.742 465 280 15 7 446 99 532 1.44e-33 133
Msa1254770 MtrunA17_Chr2g0310091 28.902 346 221 11 104 439 193 523 3.10e-33 132
Msa1254770 MtrunA17_Chr3g0117861 28.684 380 237 9 84 446 171 533 4.77e-33 132
Msa1254770 MtrunA17_Chr8g0390651 26.907 472 298 17 7 461 61 502 1.07e-28 119
Msa1254770 MtrunA17_Chr6g0485301 29.577 355 220 12 105 446 156 493 1.96e-28 118
Msa1254770 MtrunA17_Chr8g0390631 28.571 350 230 10 105 446 148 485 4.66e-28 117
Msa1254770 MtrunA17_Chr6g0485311 28.940 349 228 10 105 445 154 490 6.62e-26 110
Msa1254770 MtrunA17_Chr4g0074171 26.244 442 273 14 13 428 53 467 2.99e-19 90.5
Msa1254770 MtrunA17_Chr1g0149961 28.354 328 210 8 108 428 158 467 1.02e-18 89.0
Msa1254770 MtrunA17_Chr4g0049641 24.500 400 273 10 19 406 92 474 2.54e-16 81.6
Msa1254770 MtrunA17_Chr2g0279751 25.000 404 266 12 19 406 65 447 5.07e-16 80.5
Msa1254770 MtrunA17_Chr2g0300801 25.070 359 233 13 108 451 155 492 1.90e-15 79.0
Msa1254770 MtrunA17_Chr1g0159821 48.387 62 32 0 7 68 15 76 6.63e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254770 AT4G36250.1 57.404 493 201 2 1 493 1 484 0.0 610
Msa1254770 AT1G44170.1 47.679 474 240 2 7 480 11 476 9.59e-157 454
Msa1254770 AT1G44170.2 47.679 474 240 2 7 480 11 476 9.59e-157 454
Msa1254770 AT4G34240.1 47.280 478 244 1 5 482 72 541 2.26e-151 443
Msa1254770 AT4G34240.4 47.280 478 244 1 5 482 57 526 3.12e-151 442
Msa1254770 AT1G44170.3 49.268 410 200 2 71 480 12 413 5.38e-143 417
Msa1254770 AT4G34240.3 49.127 401 196 1 82 482 7 399 4.75e-133 391
Msa1254770 AT4G34240.2 47.095 327 165 1 5 331 72 390 5.40e-95 293
Msa1254770 AT3G66658.1 30.316 475 295 10 7 466 87 540 1.95e-49 178
Msa1254770 AT3G66658.2 30.316 475 295 10 7 466 87 540 2.43e-49 179
Msa1254770 AT1G74920.2 31.542 428 265 10 30 445 69 480 5.94e-45 165
Msa1254770 AT1G74920.1 31.542 428 265 10 30 445 74 485 7.76e-45 164
Msa1254770 AT3G48170.1 28.837 430 278 10 30 447 74 487 1.55e-39 150
Msa1254770 AT1G79440.1 30.252 357 226 11 104 449 184 528 7.51e-35 137
Msa1254770 AT1G23800.1 26.623 462 289 12 7 446 92 525 5.14e-33 132
Msa1254770 AT3G48000.1 27.632 380 241 9 84 446 167 529 7.81e-32 129
Msa1254770 AT3G24503.1 28.045 353 234 11 102 446 152 492 8.20e-29 119
Msa1254770 AT2G24270.2 29.321 324 212 7 108 428 198 507 1.02e-20 95.5
Msa1254770 AT2G24270.3 28.363 342 228 7 108 446 158 485 1.23e-20 95.1
Msa1254770 AT2G24270.1 28.363 342 228 7 108 446 158 485 1.23e-20 95.1
Msa1254770 AT2G24270.4 28.363 342 228 7 108 446 158 485 1.45e-20 95.1
Msa1254770 AT2G14170.2 22.707 458 318 12 7 448 43 480 1.88e-15 79.3
Msa1254770 AT2G14170.1 22.707 458 318 12 7 448 152 589 3.21e-15 79.0
Msa1254770 AT2G14170.3 22.705 414 287 10 7 406 152 546 9.65e-15 77.4
Msa1254770 AT1G23800.2 27.243 301 173 10 7 287 92 366 1.24e-14 76.3

Find 94 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCCTCAATGACCTTTA+TGG 0.167477 8_2:-52962869 None:intergenic
ATTGATTTGCAATACATTAT+AGG 0.167573 8_2:+52965716 Msa1254770:three_prime_UTR
GCAGATACTGCCCCAATTAT+TGG 0.191437 8_2:-52962754 None:intergenic
TTGGCATTGGATCCAATAAT+TGG 0.193325 8_2:+52962742 Msa1254770:CDS
TTTCTTGAAAGTTGCATCTT+TGG 0.201229 8_2:-52964745 None:intergenic
GGTGTTGGTCAGAGTGGTTT+TGG 0.239610 8_2:+52965447 Msa1254770:CDS
GCATAAATTGCAAGAGGTTT+TGG 0.241150 8_2:-52964717 None:intergenic
CCACCTAGCTCTAGAGTAAC+AGG 0.301770 8_2:-52963326 None:intergenic
ATATAAGATCCTACCTTCTT+AGG 0.324184 8_2:-52960664 None:intergenic
AAAATCAGCACAAAACTCTT+TGG 0.349014 8_2:+52960618 Msa1254770:CDS
AAAGCTCTTTACCAAGATCT+TGG 0.352241 8_2:+52960301 Msa1254770:CDS
TATACAGGTGAATAAAATTC+AGG 0.355113 8_2:+52964668 Msa1254770:intron
GAAAGATCATCAAATATAGT+AGG 0.370943 8_2:-52963356 None:intergenic
AGAACTACACCAAGTGGTTC+TGG 0.378314 8_2:-52960964 None:intergenic
GTTGCTGCTTCAATAGTTCA+TGG 0.387966 8_2:+52963969 Msa1254770:CDS
ACACCAATGTTGTTCATTGT+AGG 0.390428 8_2:-52960148 None:intergenic
CTTAGACACTAATGCCATAA+AGG 0.393893 8_2:+52962855 Msa1254770:CDS
GCATACAGACTGAATTACTT+TGG 0.403077 8_2:+52965600 Msa1254770:CDS
CATGCTGGAGCTTGCTCTGA+TGG 0.406820 8_2:-52962799 None:intergenic
TGGCATTGGATCCAATAATT+GGG 0.411604 8_2:+52962743 Msa1254770:CDS
CAAGTTAGAATTCCTCAGAT+TGG 0.413705 8_2:+52965578 Msa1254770:CDS
TTGAGACAGTACTTCAAAAC+AGG 0.415007 8_2:+52960196 Msa1254770:CDS
TTATGTGATACACTACCATT+TGG 0.419289 8_2:+52965423 Msa1254770:CDS
CATATGGTGCTACATATGTT+AGG 0.420594 8_2:+52965633 Msa1254770:CDS
GATACCTTGGCTCAATTTCA+AGG 0.428430 8_2:-52965539 None:intergenic
GGTGGATCTAACAATATTGT+AGG 0.428757 8_2:-52964506 None:intergenic
AAGAATAGTAGGAGCAAAGT+GGG 0.429810 8_2:+52963654 Msa1254770:CDS
TAAGTACTGAGGAAGGATAT+TGG 0.438509 8_2:-52962836 None:intergenic
ATGGCAGTGAAAAGAATAGT+AGG 0.440145 8_2:+52963643 Msa1254770:CDS
GTGAAAGGCGTCTGAAAATA+CGG 0.443663 8_2:-52965784 None:intergenic
GGAGAAGTACTCATCTGAAT+TGG 0.449394 8_2:+52963725 Msa1254770:CDS
ACACTATGCAGTGTTGGCAT+TGG 0.456843 8_2:+52962729 Msa1254770:intron
AAGCTCTTTACCAAGATCTT+GGG 0.464763 8_2:+52960302 Msa1254770:CDS
CAGGATGCTTCCCAAGATCT+TGG 0.467321 8_2:-52960312 None:intergenic
TGTAGTGGACAAGCATGTAT+AGG 0.471434 8_2:+52963681 Msa1254770:CDS
ATCATGACGGAAGAAATCTT+TGG 0.471719 8_2:+52964542 Msa1254770:CDS
CTTTGGACTAGTGCTACATA+TGG 0.480977 8_2:+52965617 Msa1254770:CDS
ACACTACCATTTGGAGGTGT+TGG 0.484552 8_2:+52965432 Msa1254770:CDS
TCATCACGGTAAGCTTCAAC+AGG 0.489627 8_2:-52960331 None:intergenic
CTGATACTCACAGTGATCAC+TGG 0.503261 8_2:-52964575 None:intergenic
TGTGATACACTACCATTTGG+AGG 0.510788 8_2:+52965426 Msa1254770:CDS
TTGAGCCAAGGTATCCTCCT+TGG 0.511711 8_2:+52965547 Msa1254770:CDS
ACAGAGAAGCATTGTAGTTG+AGG 0.513301 8_2:-52965682 None:intergenic
ATGTTTGAAACCACGGTGAA+AGG 0.514160 8_2:-52965799 None:intergenic
AATCGATTATTTGCTTGTTG+AGG 0.518086 8_2:+52963704 Msa1254770:CDS
ATAATTGGGGCAGTATCTGC+TGG 0.528260 8_2:+52962757 Msa1254770:CDS
AAAATGGATGGCTCCTAAGA+AGG 0.533456 8_2:+52960651 Msa1254770:CDS
AGCAAAGTGGGGAGTTGTAG+TGG 0.535925 8_2:+52963666 Msa1254770:CDS
TTGGCTCAATTTCAAGGCAA+AGG 0.542814 8_2:-52965533 None:intergenic
TGAACTACCTTAAAATCTGA+AGG 0.546236 8_2:-52963383 None:intergenic
AAAGATCATCAAATATAGTA+GGG 0.548769 8_2:-52963355 None:intergenic
GGTTAAGTAGAGCTTTGAGC+TGG 0.549576 8_2:-52960249 None:intergenic
CTCTGACCAACACCTCCAAA+TGG 0.550552 8_2:-52965438 None:intergenic
TAATGCCATAAAGGTCATTG+AGG 0.552612 8_2:+52962864 Msa1254770:CDS
GCAAGAAATGAAGAGCATGC+TGG 0.556083 8_2:-52962814 None:intergenic
TTACTCCAAGGAGGATACCT+TGG 0.560424 8_2:-52965552 None:intergenic
ACTCCTGTTACTCTAGAGCT+AGG 0.562087 8_2:+52963323 Msa1254770:CDS
TTTGGAGGTGTTGGTCAGAG+TGG 0.564157 8_2:+52965441 Msa1254770:CDS
CTATTGAAGCAGCAACTAGA+GGG 0.568707 8_2:-52963962 None:intergenic
AAAGAATAGTAGGAGCAAAG+TGG 0.572509 8_2:+52963653 Msa1254770:CDS
ATTGTATCAGAAACTTCCTC+AGG 0.573193 8_2:+52964771 Msa1254770:CDS
GTGAATGCATAAATTGCAAG+AGG 0.573538 8_2:-52964723 None:intergenic
ACAGTGATCACTGGAAGTAG+TGG 0.575288 8_2:-52964566 None:intergenic
GGCATTGGATCCAATAATTG+GGG 0.578716 8_2:+52962744 Msa1254770:CDS
AATGCCATAAAGGTCATTGA+GGG 0.579952 8_2:+52962865 Msa1254770:CDS
AATCCTACAATGAACAACAT+TGG 0.581075 8_2:+52960145 Msa1254770:exon
ATGACTATGCTTGCCACACG+TGG 0.587456 8_2:-52963278 None:intergenic
TGTTGAAGCTTACCGTGATG+AGG 0.592972 8_2:+52960333 Msa1254770:CDS
GTATTGAATTTATAAACTCA+AGG 0.594021 8_2:+52964694 Msa1254770:CDS
CGAGAACATGTTTGAAACCA+CGG 0.597995 8_2:-52965806 None:intergenic
ATAAAGGTCATTGAGGGTGG+AGG 0.600689 8_2:+52962871 Msa1254770:CDS
GCCATAAAGGTCATTGAGGG+TGG 0.603042 8_2:+52962868 Msa1254770:CDS
TACAATGAACAACATTGGTG+TGG 0.607534 8_2:+52960150 Msa1254770:exon
TAGTGTCTAAGTACTGAGGA+AGG 0.614966 8_2:-52962843 None:intergenic
GTCATGATTTCAGCATCTAG+TGG 0.618737 8_2:-52964527 None:intergenic
GATTGCACAATCTCTCAAAG+TGG 0.621444 8_2:-52963929 None:intergenic
AGAATAGTAGGAGCAAAGTG+GGG 0.628018 8_2:+52963655 Msa1254770:CDS
TTTGCCTTGAAATTGAGCCA+AGG 0.634603 8_2:+52965535 Msa1254770:CDS
ACTATTGAAGCAGCAACTAG+AGG 0.638003 8_2:-52963963 None:intergenic
TCAGTCTGTATGCCAATCTG+AGG 0.638610 8_2:-52965590 None:intergenic
AAAATGAGAACTACACCAAG+TGG 0.638963 8_2:-52960970 None:intergenic
GAGTTACTGCCAGAACCACT+TGG 0.646451 8_2:+52960955 Msa1254770:CDS
TCTAACTTGAACTTACTCCA+AGG 0.647081 8_2:-52965564 None:intergenic
ATGATTTCAGCATCTAGTGG+TGG 0.655142 8_2:-52964524 None:intergenic
ATTAAATATGACACTTCCTG+AGG 0.657142 8_2:-52964787 None:intergenic
GCTGCTTCAATAGTTCATGG+TGG 0.661244 8_2:+52963972 Msa1254770:CDS
TTTGCTGGGAAGAAAAGCAG+AGG 0.663378 8_2:-52960928 None:intergenic
AAGGCGTCTGAAAATACGGT+GGG 0.663404 8_2:-52965780 None:intergenic
CCTGTTACTCTAGAGCTAGG+TGG 0.670414 8_2:+52963326 Msa1254770:CDS
GCATTAGTGTCTAAGTACTG+AGG 0.688176 8_2:-52962847 None:intergenic
ACTAGATGCTGAAATCATGA+CGG 0.689032 8_2:+52964529 Msa1254770:CDS
TGTCAAACGAGTATTTCCCA+TGG 0.692335 8_2:-52965476 None:intergenic
AACTTGAACTTACTCCAAGG+AGG 0.715059 8_2:-52965561 None:intergenic
AAAGGCGTCTGAAAATACGG+TGG 0.717505 8_2:-52965781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATAATTTATATATT+TGG - chr8_2:52961943-52961962 None:intergenic 0.0%
!!! TTAAGTATTTTTTTCTTTTT+GGG - chr8_2:52960539-52960558 None:intergenic 10.0%
!!! TTTAAGTATTTTTTTCTTTT+TGG - chr8_2:52960540-52960559 None:intergenic 10.0%
!! TAACAAAAAATAAAATAAAG+GGG - chr8_2:52960710-52960729 None:intergenic 10.0%
!!! CTCATTTTTATTTATATTTT+GGG - chr8_2:52961066-52961085 None:intergenic 10.0%
!!! ACTCATTTTTATTTATATTT+TGG - chr8_2:52961067-52961086 None:intergenic 10.0%
!!! GTATTAGTAATTTTTTTTAA+GGG - chr8_2:52961737-52961756 None:intergenic 10.0%
!!! AGTATTAGTAATTTTTTTTA+AGG - chr8_2:52961738-52961757 None:intergenic 10.0%
!!! TATATACATTTTAATTTGAT+TGG + chr8_2:52963012-52963031 Msa1254770:intron 10.0%
!! TAAAAGAATAAAACTTATAA+TGG - chr8_2:52964291-52964310 None:intergenic 10.0%
!!! TATACTTTTTTTTTAGGAAA+AGG + chr8_2:52960357-52960376 Msa1254770:intron 15.0%
!!! ATACTTTTTTTTTAGGAAAA+GGG + chr8_2:52960358-52960377 Msa1254770:intron 15.0%
!!! TTTTTTCATATAACAAAAAC+AGG - chr8_2:52961870-52961889 None:intergenic 15.0%
!!! ATTGTATTTTATTTTGTTAG+GGG - chr8_2:52962311-52962330 None:intergenic 15.0%
!!! GATTGTATTTTATTTTGTTA+GGG - chr8_2:52962312-52962331 None:intergenic 15.0%
!!! AAACTATATGTCAAATTTTT+GGG - chr8_2:52964119-52964138 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr8_2:52964947-52964966 None:intergenic 15.0%
!!! AGTTGAAAATAATATTTTTG+AGG + chr8_2:52965177-52965196 Msa1254770:intron 15.0%
!!! GATTTTTATATTCAATAATC+TGG + chr8_2:52965290-52965309 Msa1254770:intron 15.0%
!!! AAAAACAGTGATTTTTATTA+TGG - chr8_2:52965356-52965375 None:intergenic 15.0%
!!! TGAGGTTATACTTTTTTTTT+AGG + chr8_2:52960351-52960370 Msa1254770:intron 20.0%
!!! AACTATTTTCACTGTTATTA+TGG + chr8_2:52960884-52960903 Msa1254770:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr8_2:52961296-52961315 Msa1254770:intron 20.0%
!! TCAAAAAAAAAAAAACAGGA+GGG - chr8_2:52961835-52961854 None:intergenic 20.0%
!! TCTCTCAAAAAAAAAAAAAC+AGG - chr8_2:52961839-52961858 None:intergenic 20.0%
!!! TTTTTATAATAATAACCGGA+TGG + chr8_2:52961979-52961998 Msa1254770:intron 20.0%
!! CAATTCTTCTAACAAAATTA+AGG + chr8_2:52962236-52962255 Msa1254770:intron 20.0%
!!! TTGTATTTTATTTTGTTAGG+GGG - chr8_2:52962310-52962329 None:intergenic 20.0%
!!! GGATTGTATTTTATTTTGTT+AGG - chr8_2:52962313-52962332 None:intergenic 20.0%
!! AAAGATCATCAAATATAGTA+GGG - chr8_2:52963358-52963377 None:intergenic 20.0%
!!! TAGTAACTTAGTAAGTTTTT+TGG + chr8_2:52963806-52963825 Msa1254770:intron 20.0%
!!! AAGTTCATGAGAAAATTTTA+TGG + chr8_2:52963858-52963877 Msa1254770:CDS 20.0%
!! AATTAATGTGTAGTGATTAT+AGG - chr8_2:52964039-52964058 None:intergenic 20.0%
!!! GAAACTATATGTCAAATTTT+TGG - chr8_2:52964120-52964139 None:intergenic 20.0%
!! GTATTGAATTTATAAACTCA+AGG + chr8_2:52964694-52964713 Msa1254770:CDS 20.0%
!!! CAAATTGTACATTTTCAAAT+GGG - chr8_2:52964908-52964927 None:intergenic 20.0%
!!! TCAAATTGTACATTTTCAAA+TGG - chr8_2:52964909-52964928 None:intergenic 20.0%
!! TCAATTGTATCATGTATTAT+GGG + chr8_2:52965099-52965118 Msa1254770:intron 20.0%
!!! ATTGATTTGCAATACATTAT+AGG + chr8_2:52965716-52965735 Msa1254770:three_prime_UTR 20.0%
!! CATCTTCATTTTCATGAATT+AGG - chr8_2:52960273-52960292 None:intergenic 25.0%
!! AAAAAAGTATAACCTCATCA+CGG - chr8_2:52960348-52960367 None:intergenic 25.0%
! TTATAATCCCATCAAAGTAA+AGG + chr8_2:52960727-52960746 Msa1254770:intron 25.0%
! TATAATCCCATCAAAGTAAA+GGG + chr8_2:52960728-52960747 Msa1254770:intron 25.0%
! TAGACAAAAGAAATTGATAC+AGG - chr8_2:52960768-52960787 None:intergenic 25.0%
! TAATTAACTGTTACATGTTC+TGG + chr8_2:52960802-52960821 Msa1254770:intron 25.0%
!!! TAGTTCTCATTTTTTCTTCT+TGG + chr8_2:52960980-52960999 Msa1254770:CDS 25.0%
!! AAATTTTGTGACTTACTGAT+TGG - chr8_2:52961012-52961031 None:intergenic 25.0%
!! AAGGAGTATAAAAAAAAGGT+GGG - chr8_2:52961040-52961059 None:intergenic 25.0%
!!! TTATTTATATTTTGGGACGA+AGG - chr8_2:52961059-52961078 None:intergenic 25.0%
!! ACCTAATTTTCACAACATTA+AGG - chr8_2:52961643-52961662 None:intergenic 25.0%
! TTAATGTTGTGAAAATTAGG+TGG + chr8_2:52961642-52961661 Msa1254770:intron 25.0%
!!! AATCACTTTAGAATATTGTG+CGG - chr8_2:52961762-52961781 None:intergenic 25.0%
! CTCAAAAAAAAAAAAACAGG+AGG - chr8_2:52961836-52961855 None:intergenic 25.0%
! TTCATATAACAAAAACAGGA+GGG - chr8_2:52961866-52961885 None:intergenic 25.0%
! TTTCATATAACAAAAACAGG+AGG - chr8_2:52961867-52961886 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr8_2:52962160-52962179 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr8_2:52962125-52962144 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr8_2:52962160-52962179 Msa1254770:intron 25.0%
! TTATTCCTCAAGTAATAGAA+AGG - chr8_2:52962561-52962580 None:intergenic 25.0%
! CTTTGATTATTGTCAAACTT+TGG + chr8_2:52962667-52962686 Msa1254770:intron 25.0%
! CAAGTTTAGTGAAATGAATT+AGG - chr8_2:52962969-52962988 None:intergenic 25.0%
! AATTCATTTCACTAAACTTG+TGG + chr8_2:52962969-52962988 Msa1254770:intron 25.0%
! TTTGAATTAGAATTTCCTTG+CGG + chr8_2:52963057-52963076 Msa1254770:intron 25.0%
! GAAAGATCATCAAATATAGT+AGG - chr8_2:52963359-52963378 None:intergenic 25.0%
!! TTCAAATCCTTCAGATTTTA+AGG + chr8_2:52963376-52963395 Msa1254770:CDS 25.0%
!!! AGCCAAAGTTTTTTAAATCA+CGG - chr8_2:52963566-52963585 None:intergenic 25.0%
! TGTCATATTATTGAAGATCA+AGG + chr8_2:52963594-52963613 Msa1254770:intron 25.0%
!!! TAGTTTGATTTTTACCAAGA+TGG + chr8_2:52963624-52963643 Msa1254770:intron 25.0%
! AAAATAAGCCCAAAATTTAG+AGG - chr8_2:52964174-52964193 None:intergenic 25.0%
!! TTTACTTCAGTTACTTTCAT+TGG - chr8_2:52964429-52964448 None:intergenic 25.0%
!! ATTTTATTCACCTGTATAGA+TGG - chr8_2:52964666-52964685 None:intergenic 25.0%
! TATACAGGTGAATAAAATTC+AGG + chr8_2:52964668-52964687 Msa1254770:intron 25.0%
! AGAGAGTAATATGTATCAAA+CGG - chr8_2:52964867-52964886 None:intergenic 25.0%
! AAATATGGTCAAAGTAAGTT+AGG - chr8_2:52964932-52964951 None:intergenic 25.0%
! TTAAGCTCAAAATTATGCAT+TGG + chr8_2:52965062-52965081 Msa1254770:intron 25.0%
! GTCAATTGTATCATGTATTA+TGG + chr8_2:52965098-52965117 Msa1254770:intron 25.0%
AATCCTACAATGAACAACAT+TGG + chr8_2:52960145-52960164 Msa1254770:exon 30.0%
!! GAAAAACAAGAAGTGTTACA+TGG + chr8_2:52960218-52960237 Msa1254770:CDS 30.0%
!! GAGTGATTACTTTTGTAGAT+TGG + chr8_2:52960586-52960605 Msa1254770:intron 30.0%
!! TGATTACTTTTGTAGATTGG+AGG + chr8_2:52960589-52960608 Msa1254770:intron 30.0%
!! GATTACTTTTGTAGATTGGA+GGG + chr8_2:52960590-52960609 Msa1254770:intron 30.0%
!! ATTACTTTTGTAGATTGGAG+GGG + chr8_2:52960591-52960610 Msa1254770:intron 30.0%
AAAATCAGCACAAAACTCTT+TGG + chr8_2:52960618-52960637 Msa1254770:CDS 30.0%
ATATAAGATCCTACCTTCTT+AGG - chr8_2:52960667-52960686 None:intergenic 30.0%
CAAAAGAAATTGATACAGGT+TGG - chr8_2:52960764-52960783 None:intergenic 30.0%
!! TTTGTCCATACTTTTGTTGT+TGG + chr8_2:52960848-52960867 Msa1254770:intron 30.0%
TAAGTCCAACAACAAAAGTA+TGG - chr8_2:52960856-52960875 None:intergenic 30.0%
! AGGAGTATAAAAAAAAGGTG+GGG - chr8_2:52961039-52961058 None:intergenic 30.0%
! GAAGGAGTATAAAAAAAAGG+TGG - chr8_2:52961041-52961060 None:intergenic 30.0%
! GACGAAGGAGTATAAAAAAA+AGG - chr8_2:52961044-52961063 None:intergenic 30.0%
! TTGTTGACTAGAATATCCTT+AGG + chr8_2:52961228-52961247 Msa1254770:intron 30.0%
!! AATATCCTTAGGCTTTGTTT+GGG + chr8_2:52961239-52961258 Msa1254770:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG - chr8_2:52961473-52961492 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG - chr8_2:52961474-52961493 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - chr8_2:52961475-52961494 None:intergenic 30.0%
ATAAAAAATCCCCCTCATTT+GGG - chr8_2:52961496-52961515 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG - chr8_2:52961497-52961516 None:intergenic 30.0%
AGGAAGAAATAGAAGACATT+GGG - chr8_2:52961554-52961573 None:intergenic 30.0%
!! ACAACATTAAGGCTTTGTTT+GGG - chr8_2:52961632-52961651 None:intergenic 30.0%
GCCTTAATGTTGTGAAAATT+AGG + chr8_2:52961639-52961658 Msa1254770:intron 30.0%
!! ATCACTTTAGAATATTGTGC+GGG - chr8_2:52961761-52961780 None:intergenic 30.0%
! TTAAGGCTTAATAGCAGTTT+TGG + chr8_2:52962253-52962272 Msa1254770:intron 30.0%
!! AGCATTGACTTTGTCAAAAT+TGG - chr8_2:52962378-52962397 None:intergenic 30.0%
GTAAACCTTTCTATTACTTG+AGG + chr8_2:52962553-52962572 Msa1254770:intron 30.0%
AACAACTACTGCTACAAAAA+TGG + chr8_2:52962905-52962924 Msa1254770:CDS 30.0%
ACAACTACTGCTACAAAAAT+GGG + chr8_2:52962906-52962925 Msa1254770:CDS 30.0%
! TGGGACAAAATATTTTTCAC+TGG + chr8_2:52962925-52962944 Msa1254770:CDS 30.0%
TGAAATGAATTAGGCTGTTA+TGG - chr8_2:52962960-52962979 None:intergenic 30.0%
GCAAGGAAATTCTAATTCAA+AGG - chr8_2:52963058-52963077 None:intergenic 30.0%
! GTTCTAGATTTATCTCTACA+TGG + chr8_2:52963234-52963253 Msa1254770:intron 30.0%
TGAACTACCTTAAAATCTGA+AGG - chr8_2:52963386-52963405 None:intergenic 30.0%
GACCGTGATTTAAAAAACTT+TGG + chr8_2:52963561-52963580 Msa1254770:intron 30.0%
! AATCGATTATTTGCTTGTTG+AGG + chr8_2:52963704-52963723 Msa1254770:CDS 30.0%
! ATTTTATGGTGACAACATGA+TGG + chr8_2:52963872-52963891 Msa1254770:CDS 30.0%
AAGAGACTACTATTACATAC+AGG - chr8_2:52964016-52964035 None:intergenic 30.0%
TTTCTTGAAAGTTGCATCTT+TGG - chr8_2:52964748-52964767 None:intergenic 30.0%
ATTAAATATGACACTTCCTG+AGG - chr8_2:52964790-52964809 None:intergenic 30.0%
GAGAGTAATATGTATCAAAC+GGG - chr8_2:52964866-52964885 None:intergenic 30.0%
TTGTATCATGTATTATGGGA+CGG + chr8_2:52965103-52965122 Msa1254770:intron 30.0%
!! AATATTTTTGAGGAGTTGAC+TGG + chr8_2:52965187-52965206 Msa1254770:intron 30.0%
ACAAAGTTGAATCTATCGAA+TGG + chr8_2:52965323-52965342 Msa1254770:intron 30.0%
TTATGTGATACACTACCATT+TGG + chr8_2:52965423-52965442 Msa1254770:CDS 30.0%
!!! TATGCAATACAGCTTTTTCA+TGG - chr8_2:52965509-52965528 None:intergenic 30.0%
ACACCAATGTTGTTCATTGT+AGG - chr8_2:52960151-52960170 None:intergenic 35.0%
TACAATGAACAACATTGGTG+TGG + chr8_2:52960150-52960169 Msa1254770:exon 35.0%
TTGAGACAGTACTTCAAAAC+AGG + chr8_2:52960196-52960215 Msa1254770:CDS 35.0%
AAAGCTCTTTACCAAGATCT+TGG + chr8_2:52960301-52960320 Msa1254770:CDS 35.0%
AAGCTCTTTACCAAGATCTT+GGG + chr8_2:52960302-52960321 Msa1254770:CDS 35.0%
CTTTGGACTGTGTTGAAAAA+TGG + chr8_2:52960635-52960654 Msa1254770:CDS 35.0%
AAAATGAGAACTACACCAAG+TGG - chr8_2:52960973-52960992 None:intergenic 35.0%
GTATAAAAAAAAGGTGGGGT+AGG - chr8_2:52961035-52961054 None:intergenic 35.0%
!! GAATATCCTTAGGCTTTGTT+TGG + chr8_2:52961238-52961257 Msa1254770:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG - chr8_2:52961469-52961488 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr8_2:52961476-52961495 None:intergenic 35.0%
!!! ATTTTTGAGTTCCCCAAATG+AGG + chr8_2:52961481-52961500 Msa1254770:intron 35.0%
!!! TTTTTGAGTTCCCCAAATGA+GGG + chr8_2:52961482-52961501 Msa1254770:intron 35.0%
TAAAAAATCCCCCTCATTTG+GGG - chr8_2:52961495-52961514 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG - chr8_2:52961551-52961570 None:intergenic 35.0%
GAGGAAGAAATAGAAGACAT+TGG - chr8_2:52961555-52961574 None:intergenic 35.0%
!! CACAACATTAAGGCTTTGTT+TGG - chr8_2:52961633-52961652 None:intergenic 35.0%
GTGGTAAGACTAATTAATGC+AGG + chr8_2:52961661-52961680 Msa1254770:intron 35.0%
CTTTGGTATATTACTCCATC+CGG - chr8_2:52961997-52962016 None:intergenic 35.0%
GATGGAGTAATATACCAAAG+AGG + chr8_2:52961997-52962016 Msa1254770:intron 35.0%
ACTTTGTCAAAATTGGACTG+GGG - chr8_2:52962371-52962390 None:intergenic 35.0%
GACTTTGTCAAAATTGGACT+GGG - chr8_2:52962372-52962391 None:intergenic 35.0%
TGACTTTGTCAAAATTGGAC+TGG - chr8_2:52962373-52962392 None:intergenic 35.0%
!!! CACGTGCGTAATTTTTTTAG+AGG + chr8_2:52962409-52962428 Msa1254770:intron 35.0%
TTTAATCTAACAGCAAGACG+AGG + chr8_2:52962623-52962642 Msa1254770:intron 35.0%
ACATTTACACTATGCAGTGT+TGG + chr8_2:52962723-52962742 Msa1254770:intron 35.0%
! TTGGCATTGGATCCAATAAT+TGG + chr8_2:52962742-52962761 Msa1254770:CDS 35.0%
! TGGCATTGGATCCAATAATT+GGG + chr8_2:52962743-52962762 Msa1254770:CDS 35.0%
!! TAAGTACTGAGGAAGGATAT+TGG - chr8_2:52962839-52962858 None:intergenic 35.0%
CTTAGACACTAATGCCATAA+AGG + chr8_2:52962855-52962874 Msa1254770:CDS 35.0%
TAATGCCATAAAGGTCATTG+AGG + chr8_2:52962864-52962883 Msa1254770:CDS 35.0%
AATGCCATAAAGGTCATTGA+GGG + chr8_2:52962865-52962884 Msa1254770:CDS 35.0%
!! AGTCGTTTCCTTTTGATTGA+TGG + chr8_2:52963179-52963198 Msa1254770:intron 35.0%
CGAAGAAACCATCAATCAAA+AGG - chr8_2:52963190-52963209 None:intergenic 35.0%
! ACATGGTGTATGACATTTTC+AGG + chr8_2:52963251-52963270 Msa1254770:intron 35.0%
! TATTCTTTTCACTGCCATCT+TGG - chr8_2:52963641-52963660 None:intergenic 35.0%
ATGGCAGTGAAAAGAATAGT+AGG + chr8_2:52963643-52963662 Msa1254770:CDS 35.0%
AAAGAATAGTAGGAGCAAAG+TGG + chr8_2:52963653-52963672 Msa1254770:CDS 35.0%
AAGAATAGTAGGAGCAAAGT+GGG + chr8_2:52963654-52963673 Msa1254770:CDS 35.0%
!!! GCTGCTATTTTTTTCTTCTG+AGG + chr8_2:52963769-52963788 Msa1254770:intron 35.0%
! AAATCCACGCCTCTAAATTT+TGG + chr8_2:52964162-52964181 Msa1254770:intron 35.0%
! AATCCACGCCTCTAAATTTT+GGG + chr8_2:52964163-52964182 Msa1254770:intron 35.0%
CAGTTTCTTACAACTTTGTC+AGG + chr8_2:52964474-52964493 Msa1254770:intron 35.0%
GGTGGATCTAACAATATTGT+AGG - chr8_2:52964509-52964528 None:intergenic 35.0%
ACTAGATGCTGAAATCATGA+CGG + chr8_2:52964529-52964548 Msa1254770:CDS 35.0%
! ATCATGACGGAAGAAATCTT+TGG + chr8_2:52964542-52964561 Msa1254770:CDS 35.0%
!! ACTTAACTTGCCATCTATAC+AGG + chr8_2:52964653-52964672 Msa1254770:intron 35.0%
! GCATAAATTGCAAGAGGTTT+TGG - chr8_2:52964720-52964739 None:intergenic 35.0%
GTGAATGCATAAATTGCAAG+AGG - chr8_2:52964726-52964745 None:intergenic 35.0%
ATTGTATCAGAAACTTCCTC+AGG + chr8_2:52964771-52964790 Msa1254770:CDS 35.0%
! TGTATCAAACGGGTTCAAAA+TGG - chr8_2:52964856-52964875 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG - chr8_2:52964895-52964914 None:intergenic 35.0%
TCTAACTTGAACTTACTCCA+AGG - chr8_2:52965567-52965586 None:intergenic 35.0%
CAAGTTAGAATTCCTCAGAT+TGG + chr8_2:52965578-52965597 Msa1254770:CDS 35.0%
GCATACAGACTGAATTACTT+TGG + chr8_2:52965600-52965619 Msa1254770:CDS 35.0%
!! CATATGGTGCTACATATGTT+AGG + chr8_2:52965633-52965652 Msa1254770:CDS 35.0%
GGACTGTGTTGAAAAATGGA+TGG + chr8_2:52960639-52960658 Msa1254770:CDS 40.0%
AAAATGGATGGCTCCTAAGA+AGG + chr8_2:52960651-52960670 Msa1254770:CDS 40.0%
TCCCATCAAAGTAAAGGGAT+TGG + chr8_2:52960733-52960752 Msa1254770:intron 40.0%
CCCAATCCCTTTACTTTGAT+GGG - chr8_2:52960737-52960756 None:intergenic 40.0%
CCCATCAAAGTAAAGGGATT+GGG + chr8_2:52960734-52960753 Msa1254770:intron 40.0%
ACCCAATCCCTTTACTTTGA+TGG - chr8_2:52960738-52960757 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr8_2:52961247-52961266 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr8_2:52961246-52961265 Msa1254770:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG - chr8_2:52961470-52961489 None:intergenic 40.0%
!!! TTTTGAGTTCCCCAAATGAG+GGG + chr8_2:52961483-52961502 Msa1254770:intron 40.0%
TGGAAAAAGGAAGGAACAAG+AGG - chr8_2:52961574-52961593 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr8_2:52961625-52961644 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr8_2:52962164-52962183 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr8_2:52962163-52962182 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr8_2:52962163-52962182 Msa1254770:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr8_2:52962164-52962183 Msa1254770:intron 40.0%
TGAAGAATTCTGCAGCATAG+TGG - chr8_2:52962204-52962223 None:intergenic 40.0%
TCGCAACTTCCTGATACTTA+GGG - chr8_2:52962281-52962300 None:intergenic 40.0%
ATCGCAACTTCCTGATACTT+AGG - chr8_2:52962282-52962301 None:intergenic 40.0%
! GTATCAGGAAGTTGCGATTT+TGG + chr8_2:52962284-52962303 Msa1254770:intron 40.0%
! CTTTGTCAAAATTGGACTGG+GGG - chr8_2:52962370-52962389 None:intergenic 40.0%
! GGCATTGGATCCAATAATTG+GGG + chr8_2:52962744-52962763 Msa1254770:CDS 40.0%
!! TAGTGTCTAAGTACTGAGGA+AGG - chr8_2:52962846-52962865 None:intergenic 40.0%
! GCATTAGTGTCTAAGTACTG+AGG - chr8_2:52962850-52962869 None:intergenic 40.0%
GCACATAAGTCCAATGTTAC+CGG - chr8_2:52963116-52963135 None:intergenic 40.0%
GTTGTTTGTGACCACAATTG+TGG + chr8_2:52963435-52963454 Msa1254770:intron 40.0%
TGTTGTCTCTGCTACAATTG+TGG + chr8_2:52963476-52963495 Msa1254770:intron 40.0%
AGAATAGTAGGAGCAAAGTG+GGG + chr8_2:52963655-52963674 Msa1254770:CDS 40.0%
!! TGTAGTGGACAAGCATGTAT+AGG + chr8_2:52963681-52963700 Msa1254770:CDS 40.0%
!! GGAGAAGTACTCATCTGAAT+TGG + chr8_2:52963725-52963744 Msa1254770:CDS 40.0%
GATTGCACAATCTCTCAAAG+TGG - chr8_2:52963932-52963951 None:intergenic 40.0%
CTATTGAAGCAGCAACTAGA+GGG - chr8_2:52963965-52963984 None:intergenic 40.0%
ACTATTGAAGCAGCAACTAG+AGG - chr8_2:52963966-52963985 None:intergenic 40.0%
! GTTGCTGCTTCAATAGTTCA+TGG + chr8_2:52963969-52963988 Msa1254770:CDS 40.0%
ATGATTTCAGCATCTAGTGG+TGG - chr8_2:52964527-52964546 None:intergenic 40.0%
GTCATGATTTCAGCATCTAG+TGG - chr8_2:52964530-52964549 None:intergenic 40.0%
TCAAATGGGTCATCTATTGC+GGG - chr8_2:52964894-52964913 None:intergenic 40.0%
TATCATGTATTATGGGACGG+AGG + chr8_2:52965106-52965125 Msa1254770:intron 40.0%
ATCATGTATTATGGGACGGA+GGG + chr8_2:52965107-52965126 Msa1254770:intron 40.0%
TAAAGGATGGGAACTGGTTA+AGG + chr8_2:52965134-52965153 Msa1254770:intron 40.0%
AGAAATGCTAATTGATGCCC+CGG - chr8_2:52965259-52965278 None:intergenic 40.0%
TGTGATACACTACCATTTGG+AGG + chr8_2:52965426-52965445 Msa1254770:CDS 40.0%
TGTCAAACGAGTATTTCCCA+TGG - chr8_2:52965479-52965498 None:intergenic 40.0%
TTGGCTCAATTTCAAGGCAA+AGG - chr8_2:52965536-52965555 None:intergenic 40.0%
TTTGCCTTGAAATTGAGCCA+AGG + chr8_2:52965535-52965554 Msa1254770:CDS 40.0%
GATACCTTGGCTCAATTTCA+AGG - chr8_2:52965542-52965561 None:intergenic 40.0%
AACTTGAACTTACTCCAAGG+AGG - chr8_2:52965564-52965583 None:intergenic 40.0%
!! CTTTGGACTAGTGCTACATA+TGG + chr8_2:52965617-52965636 Msa1254770:CDS 40.0%
!! ACAGAGAAGCATTGTAGTTG+AGG - chr8_2:52965685-52965704 None:intergenic 40.0%
!! GTGAAAGGCGTCTGAAAATA+CGG - chr8_2:52965787-52965806 None:intergenic 40.0%
! ATGTTTGAAACCACGGTGAA+AGG - chr8_2:52965802-52965821 None:intergenic 40.0%
! CGAGAACATGTTTGAAACCA+CGG - chr8_2:52965809-52965828 None:intergenic 40.0%
!! GGTTAAGTAGAGCTTTGAGC+TGG - chr8_2:52960252-52960271 None:intergenic 45.0%
TCATCACGGTAAGCTTCAAC+AGG - chr8_2:52960334-52960353 None:intergenic 45.0%
TGTTGAAGCTTACCGTGATG+AGG + chr8_2:52960333-52960352 Msa1254770:CDS 45.0%
TTTGCTGGGAAGAAAAGCAG+AGG - chr8_2:52960931-52960950 None:intergenic 45.0%
!! CTGCTTTTCTTCCCAGCAAA+AGG + chr8_2:52960931-52960950 Msa1254770:CDS 45.0%
! GCAGTAACTCTCCTTTTGCT+GGG - chr8_2:52960945-52960964 None:intergenic 45.0%
AGAACTACACCAAGTGGTTC+TGG - chr8_2:52960967-52960986 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_2:52961250-52961269 Msa1254770:intron 45.0%
TTTGGGAGTTTGGAGGGAAA+GGG + chr8_2:52961256-52961275 Msa1254770:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG - chr8_2:52961462-52961481 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG - chr8_2:52961463-52961482 None:intergenic 45.0%
! TTTGAGTTCCCCAAATGAGG+GGG + chr8_2:52961484-52961503 Msa1254770:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - chr8_2:52961545-52961564 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG - chr8_2:52961546-52961565 None:intergenic 45.0%
!!! GGAGGGTTTTGGAAAAAGGA+AGG - chr8_2:52961583-52961602 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_2:52961251-52961270 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr8_2:52961250-52961269 None:intergenic 45.0%
TTGTCTCGCATTGTCCTCTT+TGG - chr8_2:52962014-52962033 None:intergenic 45.0%
AGAATTCTGCAGCATAGTGG+CGG - chr8_2:52962201-52962220 None:intergenic 45.0%
GCAACTTCCTGATACTTAGG+GGG - chr8_2:52962279-52962298 None:intergenic 45.0%
CGCAACTTCCTGATACTTAG+GGG - chr8_2:52962280-52962299 None:intergenic 45.0%
CAAAAGGGGCAGTACTTAAG+GGG - chr8_2:52962338-52962357 None:intergenic 45.0%
GCAAAAGGGGCAGTACTTAA+GGG - chr8_2:52962339-52962358 None:intergenic 45.0%
TGCAAAAGGGGCAGTACTTA+AGG - chr8_2:52962340-52962359 None:intergenic 45.0%
! TACTGCCCCTTTTGCAGTTT+TGG + chr8_2:52962344-52962363 Msa1254770:intron 45.0%
TGACAAAGTCAATGCTGACG+TGG + chr8_2:52962382-52962401 Msa1254770:intron 45.0%
!! ACACTATGCAGTGTTGGCAT+TGG + chr8_2:52962729-52962748 Msa1254770:intron 45.0%
GCAGATACTGCCCCAATTAT+TGG - chr8_2:52962757-52962776 None:intergenic 45.0%
ATAATTGGGGCAGTATCTGC+TGG + chr8_2:52962757-52962776 Msa1254770:CDS 45.0%
! GCAAGAAATGAAGAGCATGC+TGG - chr8_2:52962817-52962836 None:intergenic 45.0%
TCCACCCTCAATGACCTTTA+TGG - chr8_2:52962872-52962891 None:intergenic 45.0%
ATAAAGGTCATTGAGGGTGG+AGG + chr8_2:52962871-52962890 Msa1254770:CDS 45.0%
CATTCATGCAGTAAGCATGC+CGG + chr8_2:52963094-52963113 Msa1254770:intron 45.0%
AGTAAGCATGCCGGTAACAT+TGG + chr8_2:52963103-52963122 Msa1254770:intron 45.0%
!! ATTTTCAGGAAGTCCACGTG+TGG + chr8_2:52963265-52963284 Msa1254770:intron 45.0%
!! ACTCCTGTTACTCTAGAGCT+AGG + chr8_2:52963323-52963342 Msa1254770:CDS 45.0%
CTGCTACAATTGTGGTCACA+TGG + chr8_2:52963484-52963503 Msa1254770:intron 45.0%
GCTGCTTCAATAGTTCATGG+TGG + chr8_2:52963972-52963991 Msa1254770:CDS 45.0%
AAGCCCAAAATTTAGAGGCG+TGG - chr8_2:52964169-52964188 None:intergenic 45.0%
ACAGTGATCACTGGAAGTAG+TGG - chr8_2:52964569-52964588 None:intergenic 45.0%
CTGATACTCACAGTGATCAC+TGG - chr8_2:52964578-52964597 None:intergenic 45.0%
! ACGGAGGGAGTATAAAGGAT+GGG + chr8_2:52965122-52965141 Msa1254770:intron 45.0%
GGAGTATAAAGGATGGGAAC+TGG + chr8_2:52965128-52965147 Msa1254770:intron 45.0%
! ACACTACCATTTGGAGGTGT+TGG + chr8_2:52965432-52965451 Msa1254770:CDS 45.0%
!! GTGTTGGTCAGAGTGGTTTT+GGG + chr8_2:52965448-52965467 Msa1254770:CDS 45.0%
TTACTCCAAGGAGGATACCT+TGG - chr8_2:52965555-52965574 None:intergenic 45.0%
TCAGTCTGTATGCCAATCTG+AGG - chr8_2:52965593-52965612 None:intergenic 45.0%
! AAGGCGTCTGAAAATACGGT+GGG - chr8_2:52965783-52965802 None:intergenic 45.0%
!! AAAGGCGTCTGAAAATACGG+TGG - chr8_2:52965784-52965803 None:intergenic 45.0%
!! AAAATATAATAAAAAGAAAA+AGG - chr8_2:52960502-52960521 None:intergenic 5.0%
!! ATAACAAAAAATAAAATAAA+GGG - chr8_2:52960711-52960730 None:intergenic 5.0%
!! TATAACAAAAAATAAAATAA+AGG - chr8_2:52960712-52960731 None:intergenic 5.0%
!!! AATTTTTTTATAATAATAAC+CGG + chr8_2:52961975-52961994 Msa1254770:intron 5.0%
CAGGATGCTTCCCAAGATCT+TGG - chr8_2:52960315-52960334 None:intergenic 50.0%
TGGATGGCTCCTAAGAAGGT+AGG + chr8_2:52960655-52960674 Msa1254770:intron 50.0%
! GGCAGTAACTCTCCTTTTGC+TGG - chr8_2:52960946-52960965 None:intergenic 50.0%
GAGTTACTGCCAGAACCACT+TGG + chr8_2:52960955-52960974 Msa1254770:CDS 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_2:52961249-52961268 Msa1254770:intron 50.0%
GTTTGGGAGTTTGGAGGGAA+AGG + chr8_2:52961255-52961274 Msa1254770:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG - chr8_2:52961461-52961480 None:intergenic 50.0%
!!! GGAGGGAGGGTTTTGGAAAA+AGG - chr8_2:52961587-52961606 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr8_2:52961249-52961268 None:intergenic 50.0%
GACAAAGTGAGTACACCCTC+CGG + chr8_2:52962029-52962048 Msa1254770:intron 50.0%
!! GTTTTGGCCCCCTAAGTATC+AGG + chr8_2:52962269-52962288 Msa1254770:intron 50.0%
TGGGGGCCAAAACTGCAAAA+GGG - chr8_2:52962353-52962372 None:intergenic 50.0%
GCCATAAAGGTCATTGAGGG+TGG + chr8_2:52962868-52962887 Msa1254770:CDS 50.0%
ATGACTATGCTTGCCACACG+TGG - chr8_2:52963281-52963300 None:intergenic 50.0%
!! CCACCTAGCTCTAGAGTAAC+AGG - chr8_2:52963329-52963348 None:intergenic 50.0%
!! CCTGTTACTCTAGAGCTAGG+TGG + chr8_2:52963326-52963345 Msa1254770:CDS 50.0%
TGACGTCGTGACCACAATTG+TGG - chr8_2:52963449-52963468 None:intergenic 50.0%
AGCAAAGTGGGGAGTTGTAG+TGG + chr8_2:52963666-52963685 Msa1254770:CDS 50.0%
ATGGGTCATCTATTGCGGGA+CGG - chr8_2:52964890-52964909 None:intergenic 50.0%
! ATGGGACGGAGGGAGTATAA+AGG + chr8_2:52965117-52965136 Msa1254770:intron 50.0%
! GACGGAGGGAGTATAAAGGA+TGG + chr8_2:52965121-52965140 Msa1254770:intron 50.0%
TTGCTTCCTTAACCCGTGTC+CGG + chr8_2:52965237-52965256 Msa1254770:intron 50.0%
CTCTGACCAACACCTCCAAA+TGG - chr8_2:52965441-52965460 None:intergenic 50.0%
!! TTTGGAGGTGTTGGTCAGAG+TGG + chr8_2:52965441-52965460 Msa1254770:CDS 50.0%
!!! GGTGTTGGTCAGAGTGGTTT+TGG + chr8_2:52965447-52965466 Msa1254770:CDS 50.0%
!!! TTGGTCAGAGTGGTTTTGGG+AGG + chr8_2:52965451-52965470 Msa1254770:CDS 50.0%
!!! AGTGGTTTTGGGAGGTACCA+TGG + chr8_2:52965459-52965478 Msa1254770:CDS 50.0%
!!! GTGGTTTTGGGAGGTACCAT+GGG + chr8_2:52965460-52965479 Msa1254770:CDS 50.0%
! TTGAGCCAAGGTATCCTCCT+TGG + chr8_2:52965547-52965566 Msa1254770:CDS 50.0%
! TTTTCAGACGCCTTTCACCG+TGG + chr8_2:52965789-52965808 Msa1254770:three_prime_UTR 50.0%
GGAGTTTGGAGGGAAAGGGA+GGG + chr8_2:52961260-52961279 Msa1254770:intron 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr8_2:52961261-52961280 Msa1254770:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG - chr8_2:52961449-52961468 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG - chr8_2:52961450-52961469 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG - chr8_2:52961459-52961478 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG - chr8_2:52961460-52961479 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG - chr8_2:52961539-52961558 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr8_2:52961615-52961634 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr8_2:52961616-52961635 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr8_2:52961617-52961636 None:intergenic 55.0%
GCGGTAACAAGTACACCCTC+CGG - chr8_2:52962182-52962201 None:intergenic 55.0%
GGGGGCCAAAACTGCAAAAG+GGG - chr8_2:52962352-52962371 None:intergenic 55.0%
CTGGGGGCCAAAACTGCAAA+AGG - chr8_2:52962354-52962373 None:intergenic 55.0%
! CATGCTGGAGCTTGCTCTGA+TGG - chr8_2:52962802-52962821 None:intergenic 55.0%
TGCTTCCTTAACCCGTGTCC+GGG + chr8_2:52965238-52965257 Msa1254770:intron 55.0%
CTAATTGATGCCCCGGACAC+GGG - chr8_2:52965252-52965271 None:intergenic 55.0%
GCTAATTGATGCCCCGGACA+CGG - chr8_2:52965253-52965272 None:intergenic 55.0%
GGGAGTTTGGAGGGAAAGGG+AGG + chr8_2:52961259-52961278 Msa1254770:intron 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG + chr8_2:52961264-52961283 Msa1254770:intron 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG + chr8_2:52961265-52961284 Msa1254770:intron 60.0%
GAAAGGGAGGGGAGGGCTTT+GGG + chr8_2:52961272-52961291 Msa1254770:intron 60.0%
AAAGGGAGGGGAGGGCTTTG+GGG + chr8_2:52961273-52961292 Msa1254770:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG - chr8_2:52961453-52961472 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - chr8_2:52961536-52961555 None:intergenic 60.0%
AGGGGCAGTACTTAAGGGGC+TGG - chr8_2:52962334-52962353 None:intergenic 60.0%
GCTTCCTTAACCCGTGTCCG+GGG + chr8_2:52965239-52965258 Msa1254770:intron 60.0%
GGAAAGGGAGGGGAGGGCTT+TGG + chr8_2:52961271-52961290 Msa1254770:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr8_2:52961274-52961293 Msa1254770:intron 65.0%
AGTTTGGAGGGGAGGGGAGG+GGG - chr8_2:52961609-52961628 None:intergenic 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr8_2:52961610-52961629 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr8_2:52961611-52961630 None:intergenic 65.0%
GCGCGAGATTGCTGACCGCA+AGG - chr8_2:52963075-52963094 None:intergenic 65.0%
! GATGCCCCGGACACGGGTTA+AGG - chr8_2:52965246-52965265 None:intergenic 65.0%
!! GAGGGGAGGGCTTTGGGGGT+TGG + chr8_2:52961278-52961297 Msa1254770:intron 70.0%
! GGAGGGGGGAGGGAGGGTTT+TGG - chr8_2:52961594-52961613 None:intergenic 70.0%
GTTTGGAGGGGAGGGGAGGG+GGG - chr8_2:52961608-52961627 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr8_2:52961612-52961631 None:intergenic 70.0%
! GGGAGGGGAGGGGGGAGGGA+GGG - chr8_2:52961600-52961619 None:intergenic 80.0%
! GGAGGGGAGGGGAGGGGGGA+GGG - chr8_2:52961604-52961623 None:intergenic 80.0%
! TGGAGGGGAGGGGAGGGGGG+AGG - chr8_2:52961605-52961624 None:intergenic 80.0%
! GGGGAGGGGAGGGGGGAGGG+AGG - chr8_2:52961601-52961620 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52960096 52965907 52960096 ID=Msa1254770;Name=Msa1254770
chr8_2 mRNA 52960096 52965907 52960096 ID=Msa1254770-mRNA-1;Parent=Msa1254770;Name=Msa1254770-mRNA-1;_AED=0.15;_eAED=0.15;_QI=58|0.88|0.9|1|1|1|10|233|495
chr8_2 exon 52960096 52960354 52960096 ID=Msa1254770-mRNA-1:exon:16312;Parent=Msa1254770-mRNA-1
chr8_2 exon 52960604 52960672 52960604 ID=Msa1254770-mRNA-1:exon:16313;Parent=Msa1254770-mRNA-1
chr8_2 exon 52960919 52961015 52960919 ID=Msa1254770-mRNA-1:exon:16314;Parent=Msa1254770-mRNA-1
chr8_2 exon 52962740 52962946 52962740 ID=Msa1254770-mRNA-1:exon:16315;Parent=Msa1254770-mRNA-1
chr8_2 exon 52963273 52963397 52963273 ID=Msa1254770-mRNA-1:exon:16316;Parent=Msa1254770-mRNA-1
chr8_2 exon 52963627 52963746 52963627 ID=Msa1254770-mRNA-1:exon:16317;Parent=Msa1254770-mRNA-1
chr8_2 exon 52963843 52964015 52963843 ID=Msa1254770-mRNA-1:exon:16318;Parent=Msa1254770-mRNA-1
chr8_2 exon 52964496 52964586 52964496 ID=Msa1254770-mRNA-1:exon:16319;Parent=Msa1254770-mRNA-1
chr8_2 exon 52964675 52964824 52964675 ID=Msa1254770-mRNA-1:exon:16320;Parent=Msa1254770-mRNA-1
chr8_2 exon 52965420 52965907 52965420 ID=Msa1254770-mRNA-1:exon:16321;Parent=Msa1254770-mRNA-1
chr8_2 five_prime_UTR 52960096 52960153 52960096 ID=Msa1254770-mRNA-1:five_prime_utr;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52960154 52960354 52960154 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52960604 52960672 52960604 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52960919 52961015 52960919 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52962740 52962946 52962740 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52963273 52963397 52963273 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52963627 52963746 52963627 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52963843 52964015 52963843 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52964496 52964586 52964496 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52964675 52964824 52964675 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 CDS 52965420 52965674 52965420 ID=Msa1254770-mRNA-1:cds;Parent=Msa1254770-mRNA-1
chr8_2 three_prime_UTR 52965675 52965907 52965675 ID=Msa1254770-mRNA-1:three_prime_utr;Parent=Msa1254770-mRNA-1
Gene Sequence

>Msa1254770

ATGAACAACATTGGTGTGGAAGTAGAAGAAACTGTAAGAGATTTGAGACAGTACTTCAAAACAGGAAAAACAAGAAGTGTTACATGGAGAAAAAACCAGCTCAAAGCTCTACTTAACCTAATTCATGAAAATGAAGATGCTATATCTAAAGCTCTTTACCAAGATCTTGGGAAGCATCCTGTTGAAGCTTACCGTGATGAGATTGGAGGGGTAGAAAAATCAGCACAAAACTCTTTGGACTGTGTTGAAAAATGGATGGCTCCTAAGAAGAGCAATATTCCTCTGCTTTTCTTCCCAGCAAAAGGAGAGTTACTGCCAGAACCACTTGGTGTAGTTCTCATTTTTTCTTCTTGGAACTTTCCAATCATGTTGGCATTGGATCCAATAATTGGGGCAGTATCTGCTGGAAATGTTGTAGTTATAAAACCATCAGAGCAAGCTCCAGCATGCTCTTCATTTCTTGCCAATATCCTTCCTCAGTACTTAGACACTAATGCCATAAAGGTCATTGAGGGTGGAGGAGATGTCTGTGAACAACTACTGCTACAAAAATGGGACAAAATATTTTTCACTGGAAGTCCACGTGTGGCAAGCATAGTCATGTCTTCTGCTGCAAGAAATTTAACTCCTGTTACTCTAGAGCTAGGTGGAAAATGCCCTACTATATTTGATGATCTTTCAAATCCTTCAGATTTTAAGTTTGATTTTTACCAAGATGGCAGTGAAAAGAATAGTAGGAGCAAAGTGGGGAGTTGTAGTGGACAAGCATGTATAGGAATCGATTATTTGCTTGTTGAGGAGAAGTACTCATCTGAATTGATAGAACTATTAAAGAAGTTCATGAGAAAATTTTATGGTGACAACATGATGGAGTCAAAGACACTCTCAAGAATAATAAATAAGAACCACTTTGAGAGATTGTGCAATCTTCTTAAAGACCCTCTAGTTGCTGCTTCAATAGTTCATGGTGGTTCAGTTGATGAAACAAACCTGTTTATTGAGCCTACAATATTGTTAGATCCACCACTAGATGCTGAAATCATGACGGAAGAAATCTTTGGTCCACTACTTCCAGTGATCACTGTGAATAAAATTCAGGAAAGTATTGAATTTATAAACTCAAGGCCAAAACCTCTTGCAATTTATGCATTCACCAAAGATGCAACTTTCAAGAAAAAGATTGTATCAGAAACTTCCTCAGGAAGTGTCATATTTAATGACACACTAGTTCAATTTTTATGTGATACACTACCATTTGGAGGTGTTGGTCAGAGTGGTTTTGGGAGGTACCATGGGAAATACTCGTTTGACACATTCAGCCATGAAAAAGCTGTATTGCATAGACACCTTTGCCTTGAAATTGAGCCAAGGTATCCTCCTTGGAGTAAGTTCAAGTTAGAATTCCTCAGATTGGCATACAGACTGAATTACTTTGGACTAGTGCTACATATGGTGCTACATATGTTAGGATTGAAAAAACACAACTAG

Protein sequence

>Msa1254770

MNNIGVEVEETVRDLRQYFKTGKTRSVTWRKNQLKALLNLIHENEDAISKALYQDLGKHPVEAYRDEIGGVEKSAQNSLDCVEKWMAPKKSNIPLLFFPAKGELLPEPLGVVLIFSSWNFPIMLALDPIIGAVSAGNVVVIKPSEQAPACSSFLANILPQYLDTNAIKVIEGGGDVCEQLLLQKWDKIFFTGSPRVASIVMSSAARNLTPVTLELGGKCPTIFDDLSNPSDFKFDFYQDGSEKNSRSKVGSCSGQACIGIDYLLVEEKYSSELIELLKKFMRKFYGDNMMESKTLSRIINKNHFERLCNLLKDPLVAASIVHGGSVDETNLFIEPTILLDPPLDAEIMTEEIFGPLLPVITVNKIQESIEFINSRPKPLAIYAFTKDATFKKKIVSETSSGSVIFNDTLVQFLCDTLPFGGVGQSGFGRYHGKYSFDTFSHEKAVLHRHLCLEIEPRYPPWSKFKLEFLRLAYRLNYFGLVLHMVLHMLGLKKHN*