AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520590 MtrunA17_Chr6g0473061 97.701 87 2 0 1 87 1 87 5.09e-56 181
Msa0520590 MtrunA17_Chr3g0136481 97.701 87 2 0 1 87 1 87 5.65e-56 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520590 AT2G26270.1 54.255 94 33 2 1 92 1 86 1.21e-24 96.7
Msa0520590 AT3G43930.3 52.000 100 38 2 1 90 1 100 3.24e-23 90.9
Msa0520590 AT3G43930.1 52.000 100 38 2 1 90 1 100 4.16e-23 92.0
Msa0520590 AT3G43930.2 52.000 100 38 2 1 90 1 100 4.61e-23 91.7

Find 177 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATAGTTTGAAGAATTA+TGG 0.150732 3_4:-73160471 Msa0520590:three_prime_UTR
TACGGTTATCTATAGTATTT+TGG 0.194222 3_4:-73157690 Msa0520590:three_prime_UTR
TGTATTCACAGTCCCCATTT+TGG 0.213595 3_4:+73157922 None:intergenic
TATGCAGAACAAACCCAATT+TGG 0.219441 3_4:+73162036 None:intergenic
GAAAATTAAGAGAGGGTAAA+AGG 0.221597 3_4:+73162087 None:intergenic
GATGAGTATGCTTGATTTCA+TGG 0.230447 3_4:+73160370 None:intergenic
CTGATGCTTGATGACATTTC+AGG 0.260903 3_4:-73159511 Msa0520590:three_prime_UTR
CAGGGCAGTAAAAGTGAAAT+TGG 0.280733 3_4:-73159287 Msa0520590:three_prime_UTR
GATAGAGTCCAGAAGGTTAT+TGG 0.281598 3_4:+73158811 None:intergenic
TGCCAAACTAGCACCTTCTT+TGG 0.298759 3_4:+73159954 None:intergenic
CTTGAGTAGGGTGCCCAAAA+TGG 0.298928 3_4:-73157936 Msa0520590:three_prime_UTR
AACAAACCCAATTTGGAAAA+AGG 0.305757 3_4:+73162043 None:intergenic
GAGAACAACCTTTCTGTTAG+AGG 0.306209 3_4:+73158638 None:intergenic
TTACGAACCACTTGAACTTT+TGG 0.310539 3_4:-73157724 Msa0520590:three_prime_UTR
AAAAGTCCATGACGATCTTC+AGG 0.319631 3_4:-73159306 Msa0520590:three_prime_UTR
TTGTGTGAGAGAAGTAATTT+TGG 0.327368 3_4:-73161167 Msa0520590:three_prime_UTR
ACTGAAAGAGTCTGTGTAAA+TGG 0.327959 3_4:+73158754 None:intergenic
TGTTAGCATGTCTGTTGATT+TGG 0.329381 3_4:-73159548 Msa0520590:three_prime_UTR
ATAAAGTAGAAATACTGATA+TGG 0.331846 3_4:+73161142 None:intergenic
CAATTCACAATTGACAAAAC+TGG 0.339488 3_4:-73160948 Msa0520590:three_prime_UTR
TTTATAGTTTGAAGAATTAT+GGG 0.341154 3_4:-73160470 Msa0520590:three_prime_UTR
GGAAGAGTATGGTGAGAAAA+TGG 0.345135 3_4:+73158513 None:intergenic
TTTAACATATAGCACAGTTT+TGG 0.346095 3_4:-73160785 Msa0520590:three_prime_UTR
CTCTATCTGTTGGTCAATAT+CGG 0.352911 3_4:-73158795 Msa0520590:three_prime_UTR
AAAATTCAAGATGATTTAGA+AGG 0.353960 3_4:+73161312 None:intergenic
TTGATTTCATGGATTCTTGC+AGG 0.362130 3_4:+73160381 None:intergenic
GATGCAGATTGGGGCTATAC+TGG 0.365924 3_4:+73161370 None:intergenic
GGTCTTGTTATATGTGTTAC+CGG 0.369177 3_4:-73161663 Msa0520590:CDS
ATCCAAAGAAGGTGCTAGTT+TGG 0.369729 3_4:-73159956 Msa0520590:three_prime_UTR
TTTAGTGGTGGTAACAGTTA+TGG 0.374078 3_4:-73161826 Msa0520590:exon
GATTACACCCAATAACCTTC+TGG 0.380114 3_4:-73158819 Msa0520590:three_prime_UTR
TTGAGTAGGGTGCCCAAAAT+GGG 0.388027 3_4:-73157935 Msa0520590:three_prime_UTR
TGCTGATGCTATTATTATAT+AGG 0.395336 3_4:+73161289 None:intergenic
TGCAGAGTCTAACAGAAGTT+TGG 0.395732 3_4:-73160319 Msa0520590:three_prime_UTR
GTACATTGAGGATGCAGATT+GGG 0.398670 3_4:+73161360 None:intergenic
TGCAATTCGGATGAAATGCC+TGG 0.401863 3_4:+73160261 None:intergenic
TTTGGCAGAAGCAAGGAATC+AGG 0.406989 3_4:-73161421 Msa0520590:intron
TTAGTGGTGGTAACAGTTAT+GGG 0.408245 3_4:-73161825 Msa0520590:exon
TCGATCAGTTTACTCAAGTA+AGG 0.418161 3_4:-73158193 Msa0520590:three_prime_UTR
GAAGAATTTCGAAGATTCTC+TGG 0.419860 3_4:-73160342 Msa0520590:three_prime_UTR
TGTCACACTGGGTTGGTTTG+TGG 0.422711 3_4:-73160708 Msa0520590:three_prime_UTR
ACATCCATTCAAAGATATCT+TGG 0.423871 3_4:-73159883 Msa0520590:three_prime_UTR
AAAATTAAGAGAGGGTAAAA+GGG 0.424229 3_4:+73162088 None:intergenic
AGTTTGGACTCAAGTTTGTC+TGG 0.430371 3_4:-73160303 Msa0520590:three_prime_UTR
AGTAAAGGACAATAAGAAAA+GGG 0.431926 3_4:+73162187 None:intergenic
GCATCCTCAATGTACTCATT+TGG 0.432536 3_4:-73161352 Msa0520590:CDS
TTGTGAATTGCAGAAAATAG+AGG 0.434508 3_4:+73160961 None:intergenic
GGCCTCTTTGTTGTCACACT+GGG 0.434913 3_4:-73160719 Msa0520590:three_prime_UTR
AAGTAAAGGACAATAAGAAA+AGG 0.436020 3_4:+73162186 None:intergenic
GAATCGCCACATCTATTTCA+AGG 0.441154 3_4:+73158244 None:intergenic
GGGACTGTGAATACAAGAAA+TGG 0.443737 3_4:-73157914 Msa0520590:three_prime_UTR
ATCCACACCTTTAGATAAAC+CGG 0.444295 3_4:+73161644 None:intergenic
AGAAGGTTATTGGGTGTAAT+CGG 0.444905 3_4:+73158821 None:intergenic
CTTCAAACTATAAAGTGATT+CGG 0.448581 3_4:+73160479 None:intergenic
AATGCCTGGATCAACGTAGA+TGG 0.449609 3_4:+73160275 None:intergenic
CCAGCAAAAGGAGCATTTGA+TGG 0.452352 3_4:+73161684 None:intergenic
TCCTCAATGTACTCATTTGG+TGG 0.452439 3_4:-73161349 Msa0520590:CDS
TGTGTTACCGGTTTATCTAA+AGG 0.452554 3_4:-73161651 Msa0520590:intron
CTTGAAGTCATGCACTATAC+AGG 0.453779 3_4:-73160610 Msa0520590:three_prime_UTR
ATAGAGTCCAGAAGGTTATT+GGG 0.457546 3_4:+73158812 None:intergenic
CTGAAATGTCATCAAGCATC+AGG 0.464163 3_4:+73159512 None:intergenic
ATCTCGGAAAACCGGTCCAC+AGG 0.464717 3_4:+73158491 None:intergenic
TTGGCAGACCAATGGTTTGT+TGG 0.465550 3_4:-73159937 Msa0520590:three_prime_UTR
ATGTGTATGAGTTATTACTT+AGG 0.468174 3_4:-73158068 Msa0520590:three_prime_UTR
TAAAGTAGAAATACTGATAT+GGG 0.475297 3_4:+73161143 None:intergenic
TGCCATCTGTTTCCACAGCA+TGG 0.475634 3_4:-73160835 Msa0520590:three_prime_UTR
TGCTCCATCTACGTTGATCC+AGG 0.475904 3_4:-73160279 Msa0520590:three_prime_UTR
TTACACCCCAAGTCTTCAAA+AGG 0.477167 3_4:-73157863 Msa0520590:three_prime_UTR
TGATGCAAAAGGGGATGAGA+AGG 0.477811 3_4:-73158693 Msa0520590:three_prime_UTR
CATCAGCATGATGCTGTAGT+AGG 0.481432 3_4:-73161274 Msa0520590:three_prime_UTR
GAAGACATGTAAAACCGTTA+TGG 0.482418 3_4:+73158441 None:intergenic
GAGTTATTACTTAGGGCATA+AGG 0.483600 3_4:-73158060 Msa0520590:three_prime_UTR
TCTTTGTTGTCACACTGGGT+TGG 0.484753 3_4:-73160715 Msa0520590:three_prime_UTR
AATATCACAAAAGCCGTGTC+AGG 0.485399 3_4:+73160585 None:intergenic
TGGGGATAACAATATGAAGT+TGG 0.486015 3_4:-73160451 Msa0520590:three_prime_UTR
TGATGCTTGATGACATTTCA+GGG 0.486927 3_4:-73159510 Msa0520590:three_prime_UTR
CCATGATCATGGTTCATAAG+AGG 0.487562 3_4:+73160866 None:intergenic
AATCAGAACTCTTCAACCAT+TGG 0.490906 3_4:-73161742 Msa0520590:CDS
TCAGTATTTCTACTTTATCT+CGG 0.491918 3_4:-73161137 Msa0520590:three_prime_UTR
TCAAGATGATTTAGAAGGAA+AGG 0.492055 3_4:+73161317 None:intergenic
AATTGCGGAGAGGATGAAAC+AGG 0.492134 3_4:+73161708 None:intergenic
CTGTTACATTAAAGATGTGT+TGG 0.492623 3_4:-73157971 Msa0520590:three_prime_UTR
TACACACCCAAGTCTTGAAA+AGG 0.493665 3_4:-73157821 Msa0520590:three_prime_UTR
GGACTGTGAATACAAGAAAT+GGG 0.494131 3_4:-73157913 Msa0520590:three_prime_UTR
GTTGAAGTTGCGAGTGGCAA+AGG 0.494441 3_4:-73161789 Msa0520590:CDS
CCGGTCCACAGGGAAGAGTA+TGG 0.500922 3_4:+73158502 None:intergenic
AAGGGCCGATCTCGGAAAAC+CGG 0.502602 3_4:+73158483 None:intergenic
TGTGTATGAGTTATTACTTA+GGG 0.502710 3_4:-73158067 Msa0520590:three_prime_UTR
TGGCCTCTTTGTTGTCACAC+TGG 0.503600 3_4:-73160720 Msa0520590:three_prime_UTR
TCGCCGTGGTCGTCGAATGC+AGG 0.505488 3_4:-73159213 Msa0520590:intron
CGAGTGGCAAAGGGTGTTCG+AGG 0.509530 3_4:-73161779 Msa0520590:CDS
AGGATGAAACAGGAGACATT+TGG 0.509792 3_4:+73161718 None:intergenic
AGTACATTGAGGATGCAGAT+TGG 0.510198 3_4:+73161359 None:intergenic
CCATACTCTTCCCTGTGGAC+CGG 0.511727 3_4:-73158502 Msa0520590:three_prime_UTR
GCAAGCAACAACCATGATCA+TGG 0.516567 3_4:+73160855 None:intergenic
ATGGAGGCTACAGAGAGATT+AGG 0.517779 3_4:-73161396 Msa0520590:CDS
GGAGCATTTGATGGCAATTG+CGG 0.518188 3_4:+73161693 None:intergenic
CAGATTCAAGACATGCGGAC+AGG 0.518946 3_4:-73158218 Msa0520590:three_prime_UTR
CTTCCCGGGTACACAAATGC+TGG 0.520659 3_4:-73160414 Msa0520590:three_prime_UTR
CATATAACAAGACCAGCAAA+AGG 0.535472 3_4:+73161672 None:intergenic
GCTGAAACTGCATCCAAAGA+AGG 0.536257 3_4:-73159967 Msa0520590:three_prime_UTR
ACAGGAGACATTTGGTCCAA+TGG 0.538148 3_4:+73161726 None:intergenic
TTGAAGTTGCGAGTGGCAAA+GGG 0.545784 3_4:-73161788 Msa0520590:CDS
ATTTCCAGCATTTGTGTACC+CGG 0.546283 3_4:+73160410 None:intergenic
TCTTGAGGAAGGGCCGATCT+CGG 0.547315 3_4:+73158475 None:intergenic
AAAGTCCATGACGATCTTCA+GGG 0.549038 3_4:-73159305 Msa0520590:three_prime_UTR
GGAGTGTGCAGAAGAAGTAA+AGG 0.549629 3_4:+73162172 None:intergenic
GTTGATTTGGCAAGACAAGT+TGG 0.550833 3_4:-73159535 Msa0520590:three_prime_UTR
AAGATTTCATGATGGTACTA+CGG 0.556839 3_4:+73160806 None:intergenic
GTTGGTTTGTGGATAGTGTC+AGG 0.558130 3_4:-73160697 Msa0520590:three_prime_UTR
ATATACTTACATGAACCCAT+TGG 0.558502 3_4:-73161237 Msa0520590:three_prime_UTR
GTGCTAGTTTGGCAGACCAA+TGG 0.559716 3_4:-73159945 Msa0520590:three_prime_UTR
GCCACATCTATTTCAAGGCT+AGG 0.562789 3_4:+73158249 None:intergenic
GTTAGTCATGTAGTCACTGA+AGG 0.562909 3_4:-73159907 Msa0520590:three_prime_UTR
TTTGAGCATGCAGTAAAGCA+TGG 0.564693 3_4:-73160752 Msa0520590:three_prime_UTR
GTAACAGTTATGGGTGGTGA+GGG 0.565849 3_4:-73161816 Msa0520590:exon
GTGGAACATGTCACTTGAGT+AGG 0.567006 3_4:-73157949 Msa0520590:three_prime_UTR
CACTATACAGGAACCTGACA+CGG 0.569964 3_4:-73160598 Msa0520590:three_prime_UTR
GTATCCAAGATATCTTTGAA+TGG 0.574153 3_4:+73159879 None:intergenic
GTAAGGAAACAGCGGAGCGT+GGG 0.574806 3_4:-73158176 Msa0520590:three_prime_UTR
ACCTTCTGGACTCTATCTGT+TGG 0.575317 3_4:-73158805 Msa0520590:three_prime_UTR
AGTAAGGAAACAGCGGAGCG+TGG 0.576929 3_4:-73158177 Msa0520590:three_prime_UTR
GCTTGATGACATTTCAGGGA+AGG 0.577574 3_4:-73159506 Msa0520590:intron
CAAATTGGGAAAATTAAGAG+AGG 0.577775 3_4:+73162079 None:intergenic
CAGCATGATGCTGTAGTAGG+AGG 0.577914 3_4:-73161271 Msa0520590:three_prime_UTR
TTCATCCGAATTGCAAAACA+AGG 0.577926 3_4:-73160253 Msa0520590:intron
CCACATGTCCTCTAACAGAA+AGG 0.578709 3_4:-73158646 Msa0520590:intron
AAATTAAGAGAGGGTAAAAG+GGG 0.585895 3_4:+73162089 None:intergenic
CATTACAGCCAACAAACCAT+TGG 0.587337 3_4:+73159929 None:intergenic
TACATTGAGGATGCAGATTG+GGG 0.589195 3_4:+73161361 None:intergenic
TAGAAGCACTCACTGTAATG+AGG 0.589590 3_4:+73159848 None:intergenic
CCTTTCTGTTAGAGGACATG+TGG 0.589664 3_4:+73158646 None:intergenic
TACTGCCCTGAAGATCGTCA+TGG 0.589825 3_4:+73159300 None:intergenic
AATAAGATATTGATGAGCAC+AGG 0.593011 3_4:+73160906 None:intergenic
TACAAAATATTGTGAAGTAG+CGG 0.596986 3_4:-73161020 Msa0520590:three_prime_UTR
GTGGATTCTCAAAACAGCTA+AGG 0.597139 3_4:-73159590 Msa0520590:three_prime_UTR
AAAAGCTTCTCTTCATCACC+AGG 0.600801 3_4:+73161904 None:intergenic
TTACATTAAAGATGTGTTGG+TGG 0.602391 3_4:-73157968 Msa0520590:three_prime_UTR
TCTCGGAAAACCGGTCCACA+GGG 0.604616 3_4:+73158492 None:intergenic
TTGGGTGTAATCGGACGGAT+CGG 0.604793 3_4:+73158830 None:intergenic
GGTAACAGTTATGGGTGGTG+AGG 0.606272 3_4:-73161817 Msa0520590:exon
CCTCTTATGAACCATGATCA+TGG 0.608938 3_4:-73160866 Msa0520590:three_prime_UTR
ACCAACAGATAGAGTCCAGA+AGG 0.609079 3_4:+73158804 None:intergenic
GAAATGTTGAAGCGCGTGAG+TGG 0.613290 3_4:-73158105 Msa0520590:three_prime_UTR
ATATGTTAAAGATTTCATGA+TGG 0.613863 3_4:+73160798 None:intergenic
TGGAACATGTCACTTGAGTA+GGG 0.616343 3_4:-73157948 Msa0520590:three_prime_UTR
AGTGTATCGCAGAACAATAG+TGG 0.616508 3_4:+73161053 None:intergenic
ATCCATGCTGTGGAAACAGA+TGG 0.617621 3_4:+73160833 None:intergenic
CTACGGAAATATCCATGCTG+TGG 0.623393 3_4:+73160823 None:intergenic
AACCCAGTGTGACAACAAAG+AGG 0.624024 3_4:+73160717 None:intergenic
CTAAGGAGAAACAAGTGCAA+AGG 0.624728 3_4:-73159573 Msa0520590:three_prime_UTR
ACATAACTTGAAATTCAAAG+AGG 0.625524 3_4:+73161953 None:intergenic
TCATTCAGATTCAAGACATG+CGG 0.626495 3_4:-73158223 Msa0520590:three_prime_UTR
GACTGTGAATACAAGAAATG+GGG 0.626820 3_4:-73157912 Msa0520590:three_prime_UTR
TTATAGTTTGAAGAATTATG+GGG 0.627002 3_4:-73160469 Msa0520590:three_prime_UTR
GGTTATTGGGTGTAATCGGA+CGG 0.627487 3_4:+73158825 None:intergenic
TGAGTAGGGTGCCCAAAATG+GGG 0.631792 3_4:-73157934 Msa0520590:three_prime_UTR
GCCTAGCCTTGAAATAGATG+TGG 0.639029 3_4:-73158250 Msa0520590:three_prime_UTR
TTAGTCATGTAGTCACTGAA+GGG 0.640621 3_4:-73159906 Msa0520590:three_prime_UTR
GAATATAGTGCAGTGGTGTG+AGG 0.641520 3_4:+73162219 None:intergenic
AGAAGCAAGGAATCAGGTCA+TGG 0.644925 3_4:-73161415 Msa0520590:CDS
GAGGCTACAGAGAGATTAGG+TGG 0.645575 3_4:-73161393 Msa0520590:CDS
TCTCACCATACTCTTCCCTG+TGG 0.646627 3_4:-73158507 Msa0520590:three_prime_UTR
ACCACCAAATGAGTACATTG+AGG 0.647498 3_4:+73161348 None:intergenic
TTTCCAGCATTTGTGTACCC+GGG 0.655427 3_4:+73160411 None:intergenic
AAGTAATAACTCATACACAT+TGG 0.664276 3_4:+73158071 None:intergenic
AAATTGGGAAAATTAAGAGA+GGG 0.670526 3_4:+73162080 None:intergenic
ATTTGATGGCAATTGCGGAG+AGG 0.674786 3_4:+73161698 None:intergenic
TGACCTGCATTCGACGACCA+CGG 0.680999 3_4:+73159210 None:intergenic
GCTATAGCACTGCTGCACAG+CGG 0.683726 3_4:-73160996 Msa0520590:three_prime_UTR
ATGATATTTCTCAGCCAGTG+TGG 0.684887 3_4:-73159609 Msa0520590:intron
GGTAGAGTTGAAGTTGCGAG+TGG 0.698549 3_4:-73161795 Msa0520590:CDS
AGCAAGGAATCAGGTCATGG+AGG 0.703167 3_4:-73161412 Msa0520590:CDS
ACTGTGAATACAAGAAATGG+GGG 0.709309 3_4:-73157911 Msa0520590:three_prime_UTR
GTGGTGGTAACAGTTATGGG+TGG 0.723421 3_4:-73161822 Msa0520590:exon
AATGGTGTCAGAAGTCGCCG+TGG 0.728899 3_4:-73159227 Msa0520590:three_prime_UTR
TTACTCAAGTAAGGAAACAG+CGG 0.729643 3_4:-73158184 Msa0520590:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGCTTTTTTTTTTTTTAA+CGG - chr3_4:73160230-73160249 Msa0520590:intron 10.0%
!! TTTATAGTTTGAAGAATTAT+GGG - chr3_4:73159492-73159511 Msa0520590:intron 15.0%
!! TCCTATTTATAAGAAAAATT+TGG - chr3_4:73159759-73159778 Msa0520590:intron 15.0%
!! CCTATTTATAAGAAAAATTT+GGG - chr3_4:73159760-73159779 Msa0520590:intron 15.0%
!!! AAACATTTAGAATAATCTTT+TGG - chr3_4:73160159-73160178 Msa0520590:intron 15.0%
!! TATTATAACAAATGCTAATA+AGG + chr3_4:73161598-73161617 None:intergenic 15.0%
!!! TATTAGCATTTGTTATAATA+CGG - chr3_4:73161598-73161617 Msa0520590:intron 15.0%
!!! TGAATTTTTAGGATGAAAAA+TGG + chr3_4:73157814-73157833 None:intergenic 20.0%
!!! GTGAAATTTTTGAACAAATT+GGG + chr3_4:73157900-73157919 None:intergenic 20.0%
!! GTTAATGTTATTCTTTGAAT+TGG - chr3_4:73158515-73158534 Msa0520590:three_prime_UTR 20.0%
!! AAAATTCAAGATGATTTAGA+AGG + chr3_4:73158653-73158672 None:intergenic 20.0%
!!! AATTGTTTGCTTAACTTTTT+TGG - chr3_4:73158772-73158791 Msa0520590:three_prime_UTR 20.0%
!! TAAAGTAGAAATACTGATAT+GGG + chr3_4:73158822-73158841 None:intergenic 20.0%
!! ATAAAGTAGAAATACTGATA+TGG + chr3_4:73158823-73158842 None:intergenic 20.0%
!! ATATGTTAAAGATTTCATGA+TGG + chr3_4:73159167-73159186 None:intergenic 20.0%
!! CTTTATAGTTTGAAGAATTA+TGG - chr3_4:73159491-73159510 Msa0520590:intron 20.0%
!! TTATAGTTTGAAGAATTATG+GGG - chr3_4:73159493-73159512 Msa0520590:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG + chr3_4:73159758-73159777 None:intergenic 20.0%
!!! CCCAAATTTTTCTTATAAAT+AGG + chr3_4:73159763-73159782 None:intergenic 20.0%
!! TCAACAAAAGTTAATGAATT+TGG + chr3_4:73159822-73159841 None:intergenic 20.0%
!!! AATATCTAGACATTTTGTAA+TGG - chr3_4:73159884-73159903 Msa0520590:three_prime_UTR 20.0%
!! ATTAATATTATGCGATAAGT+AGG - chr3_4:73160287-73160306 Msa0520590:three_prime_UTR 20.0%
!! TCATTGTGATGTAAATAATA+CGG + chr3_4:73160319-73160338 None:intergenic 20.0%
!! CGAAATTAAATATTCCAATA+TGG + chr3_4:73160995-73161014 None:intergenic 20.0%
!!! TTTTGCATCAAAAAATATTG+AGG + chr3_4:73161259-73161278 None:intergenic 20.0%
!!! TCAATATTTTTTGATGCAAA+AGG - chr3_4:73161258-73161277 Msa0520590:three_prime_UTR 20.0%
!!! CAATATTTTTTGATGCAAAA+GGG - chr3_4:73161259-73161278 Msa0520590:three_prime_UTR 20.0%
!!! AATATTTTTTGATGCAAAAG+GGG - chr3_4:73161260-73161279 Msa0520590:three_prime_UTR 20.0%
!!! TATGGCTTAATATTTCATTT+TGG - chr3_4:73161389-73161408 Msa0520590:CDS 20.0%
!!! ATGGTTTTTAAATATCAACT+CGG + chr3_4:73161433-73161452 None:intergenic 20.0%
!!! TTGAAACGAATTGAATTTTT+GGG - chr3_4:73161818-73161837 Msa0520590:exon 20.0%
!!! TTTTTTTGAATATAGTGCAG+TGG + chr3_4:73157753-73157772 None:intergenic 25.0%
! AGTAAAGGACAATAAGAAAA+GGG + chr3_4:73157778-73157797 None:intergenic 25.0%
! AAGTAAAGGACAATAAGAAA+AGG + chr3_4:73157779-73157798 None:intergenic 25.0%
!! GAGACAAAGAATGAATTTTT+AGG + chr3_4:73157825-73157844 None:intergenic 25.0%
! AAAATTAAGAGAGGGTAAAA+GGG + chr3_4:73157877-73157896 None:intergenic 25.0%
! AAATTGGGAAAATTAAGAGA+GGG + chr3_4:73157885-73157904 None:intergenic 25.0%
!! GGTGAAATTTTTGAACAAAT+TGG + chr3_4:73157901-73157920 None:intergenic 25.0%
!! AATTTCACCTTTTTCCAAAT+TGG - chr3_4:73157912-73157931 Msa0520590:three_prime_UTR 25.0%
!! ATTTCACCTTTTTCCAAATT+GGG - chr3_4:73157913-73157932 Msa0520590:three_prime_UTR 25.0%
!!! AATTGTTTTTTTGGTCAATG+AGG - chr3_4:73157976-73157995 Msa0520590:three_prime_UTR 25.0%
! ACATAACTTGAAATTCAAAG+AGG + chr3_4:73158012-73158031 None:intergenic 25.0%
!! TATATAGATTTTCAATTGCC+TGG - chr3_4:73158040-73158059 Msa0520590:three_prime_UTR 25.0%
! TGCTGATGCTATTATTATAT+AGG + chr3_4:73158676-73158695 None:intergenic 25.0%
!!! TAACAGAACTTTTTTCCAAT+GGG + chr3_4:73158743-73158762 None:intergenic 25.0%
!!! TTAACAGAACTTTTTTCCAA+TGG + chr3_4:73158744-73158763 None:intergenic 25.0%
!! AAGTTAAGCAAACAATTTTC+AGG + chr3_4:73158769-73158788 None:intergenic 25.0%
!! TCAGTATTTCTACTTTATCT+CGG - chr3_4:73158825-73158844 Msa0520590:three_prime_UTR 25.0%
!!! ATCTCGGTATTTTTAAATAG+TGG - chr3_4:73158841-73158860 Msa0520590:three_prime_UTR 25.0%
!! TTTTTAAATAGTGGCTATAG+TGG - chr3_4:73158850-73158869 Msa0520590:intron 25.0%
! TACAAAATATTGTGAAGTAG+CGG - chr3_4:73158942-73158961 Msa0520590:intron 25.0%
!! TTTAACATATAGCACAGTTT+TGG - chr3_4:73159177-73159196 Msa0520590:intron 25.0%
! CTTCAAACTATAAAGTGATT+CGG + chr3_4:73159486-73159505 None:intergenic 25.0%
!!! ATTTACCTTGTTTTGCAATT+CGG + chr3_4:73159717-73159736 None:intergenic 25.0%
! CTCAAATTTCTCTTGTAAAT+AGG - chr3_4:73159842-73159861 Msa0520590:intron 25.0%
!!! CATTTAGAATAATCTTTTGG+AGG - chr3_4:73160162-73160181 Msa0520590:intron 25.0%
! TGATGTAAATAATACGGTAT+AGG + chr3_4:73160313-73160332 None:intergenic 25.0%
! GTATTTACAATTCCAAGAAA+AGG + chr3_4:73160512-73160531 None:intergenic 25.0%
! AAAATTAGCGAGTTTAATCT+TGG + chr3_4:73160534-73160553 None:intergenic 25.0%
! TCACAATTTCAAGAAAATGA+GGG + chr3_4:73160599-73160618 None:intergenic 25.0%
! ATCACAATTTCAAGAAAATG+AGG + chr3_4:73160600-73160619 None:intergenic 25.0%
! ATTGTAAATTCAGCGAAAAA+TGG - chr3_4:73160717-73160736 Msa0520590:three_prime_UTR 25.0%
! AAATCACATGTATAGATTAG+TGG + chr3_4:73160895-73160914 None:intergenic 25.0%
! AAAGATAACAAACTAAAGAC+AGG + chr3_4:73161032-73161051 None:intergenic 25.0%
!! ATTGAGGTATGATTTTCATT+AGG + chr3_4:73161243-73161262 None:intergenic 25.0%
! TTAAGCCATATTTACTACAT+CGG + chr3_4:73161379-73161398 None:intergenic 25.0%
!! GTTGAAACGAATTGAATTTT+TGG - chr3_4:73161817-73161836 Msa0520590:exon 25.0%
! AAGTAATAACTCATACACAT+TGG + chr3_4:73161894-73161913 None:intergenic 25.0%
! ATGTGTATGAGTTATTACTT+AGG - chr3_4:73161894-73161913 Msa0520590:five_prime_UTR 25.0%
! TGTGTATGAGTTATTACTTA+GGG - chr3_4:73161895-73161914 Msa0520590:five_prime_UTR 25.0%
!!! TTAAATCCTTTTCAAGACTT+GGG + chr3_4:73162150-73162169 None:intergenic 25.0%
!!! ATTAAATCCTTTTCAAGACT+TGG + chr3_4:73162151-73162170 None:intergenic 25.0%
!!! CTTTTGGTTTTTCATTGTTA+CGG - chr3_4:73162254-73162273 Msa0520590:five_prime_UTR 25.0%
! TTTTGTGTGTGATTCCATTT+TGG + chr3_4:73157694-73157713 None:intergenic 30.0%
AAATTAAGAGAGGGTAAAAG+GGG + chr3_4:73157876-73157895 None:intergenic 30.0%
GAAAATTAAGAGAGGGTAAA+AGG + chr3_4:73157878-73157897 None:intergenic 30.0%
CAAATTGGGAAAATTAAGAG+AGG + chr3_4:73157886-73157905 None:intergenic 30.0%
AACAAACCCAATTTGGAAAA+AGG + chr3_4:73157922-73157941 None:intergenic 30.0%
TCATGTCTTCTATGATTGAT+TGG - chr3_4:73158341-73158360 Msa0520590:intron 30.0%
CAATGACTTCAAGTAAGATA+AGG + chr3_4:73158382-73158401 None:intergenic 30.0%
CTTATCTTACTTGAAGTCAT+TGG - chr3_4:73158380-73158399 Msa0520590:intron 30.0%
TCATATACTTGAGCTTGAAA+AGG - chr3_4:73158435-73158454 Msa0520590:three_prime_UTR 30.0%
! TATTCTTTGAATTGGCGTTT+TGG - chr3_4:73158523-73158542 Msa0520590:three_prime_UTR 30.0%
TCAAGATGATTTAGAAGGAA+AGG + chr3_4:73158648-73158667 None:intergenic 30.0%
ATATACTTACATGAACCCAT+TGG - chr3_4:73158725-73158744 Msa0520590:three_prime_UTR 30.0%
! TTGTGTGAGAGAAGTAATTT+TGG - chr3_4:73158795-73158814 Msa0520590:three_prime_UTR 30.0%
TTGTGAATTGCAGAAAATAG+AGG + chr3_4:73159004-73159023 None:intergenic 30.0%
CAATTCACAATTGACAAAAC+TGG - chr3_4:73159014-73159033 Msa0520590:intron 30.0%
AATAAGATATTGATGAGCAC+AGG + chr3_4:73159059-73159078 None:intergenic 30.0%
AAGATTTCATGATGGTACTA+CGG + chr3_4:73159159-73159178 None:intergenic 30.0%
GTAAAGCATGGAACAAAAAA+TGG - chr3_4:73159222-73159241 Msa0520590:three_prime_UTR 30.0%
! TCATTTTGTCTACTACAGTA+AGG - chr3_4:73159456-73159475 Msa0520590:intron 30.0%
ATTTCTCTTGTAAATAGGAC+CGG - chr3_4:73159847-73159866 Msa0520590:intron 30.0%
ACATCCATTCAAAGATATCT+TGG - chr3_4:73160079-73160098 Msa0520590:intron 30.0%
GTATCCAAGATATCTTTGAA+TGG + chr3_4:73160086-73160105 None:intergenic 30.0%
AAAAAAGCAAAACAAGTGTG+AGG + chr3_4:73160221-73160240 None:intergenic 30.0%
TTACAATTCCAAGAAAAGGA+GGG + chr3_4:73160508-73160527 None:intergenic 30.0%
TTTACAATTCCAAGAAAAGG+AGG + chr3_4:73160509-73160528 None:intergenic 30.0%
TTCAACAAACCACTCAAATT+TGG - chr3_4:73160552-73160571 Msa0520590:three_prime_UTR 30.0%
! TTTTGCAAACCAAATTTGAG+TGG + chr3_4:73160564-73160583 None:intergenic 30.0%
CTGAATTTCATTGACATAAC+AGG - chr3_4:73160620-73160639 Msa0520590:three_prime_UTR 30.0%
AGCAAAATCAACAAACTTAG+AGG + chr3_4:73160869-73160888 None:intergenic 30.0%
TCTATACATGTGATTTGAGT+TGG - chr3_4:73160899-73160918 Msa0520590:three_prime_UTR 30.0%
!! TGTGATTTGAGTTGGTAATT+TGG - chr3_4:73160907-73160926 Msa0520590:three_prime_UTR 30.0%
! GTTCCTCATTCTTAACATTT+TGG - chr3_4:73160952-73160971 Msa0520590:three_prime_UTR 30.0%
AGACCAAAATGTTAAGAATG+AGG + chr3_4:73160958-73160977 None:intergenic 30.0%
!! AACATTTTGGTCTATGAAAC+TGG - chr3_4:73160965-73160984 Msa0520590:three_prime_UTR 30.0%
ATGAAACTGGATTTCCATAT+TGG - chr3_4:73160978-73160997 Msa0520590:three_prime_UTR 30.0%
! GGAATATTTAATTTCGAGCA+CGG - chr3_4:73160999-73161018 Msa0520590:three_prime_UTR 30.0%
! TTTTCCCGATGTAGTAAATA+TGG - chr3_4:73161371-73161390 Msa0520590:CDS 30.0%
TAAGCCATATTTACTACATC+GGG + chr3_4:73161378-73161397 None:intergenic 30.0%
! TCATATCCATGCATTTTATC+AGG - chr3_4:73161554-73161573 Msa0520590:intron 30.0%
! CTTTTACCTGATAAAATGCA+TGG + chr3_4:73161563-73161582 None:intergenic 30.0%
! CATGCATTTTATCAGGTAAA+AGG - chr3_4:73161561-73161580 Msa0520590:intron 30.0%
CTGTTACATTAAAGATGTGT+TGG - chr3_4:73161991-73162010 Msa0520590:five_prime_UTR 30.0%
TTACATTAAAGATGTGTTGG+TGG - chr3_4:73161994-73162013 Msa0520590:five_prime_UTR 30.0%
!! AGATAACCTTTTGAAGACTT+GGG + chr3_4:73162108-73162127 None:intergenic 30.0%
!! TAGATAACCTTTTGAAGACT+TGG + chr3_4:73162109-73162128 None:intergenic 30.0%
TGAAAAACCAAAAGTTCAAG+TGG + chr3_4:73162248-73162267 None:intergenic 30.0%
GACAAAAGGGGTTATAGAAT+TGG + chr3_4:73157847-73157866 None:intergenic 35.0%
TATGCAGAACAAACCCAATT+TGG + chr3_4:73157929-73157948 None:intergenic 35.0%
!! TGTGTTGTTCACTGTTTTAG+TGG - chr3_4:73158121-73158140 Msa0520590:three_prime_UTR 35.0%
TTTAGTGGTGGTAACAGTTA+TGG - chr3_4:73158136-73158155 Msa0520590:three_prime_UTR 35.0%
TTAGTGGTGGTAACAGTTAT+GGG - chr3_4:73158137-73158156 Msa0520590:three_prime_UTR 35.0%
AATCAGAACTCTTCAACCAT+TGG - chr3_4:73158220-73158239 Msa0520590:three_prime_UTR 35.0%
CATATAACAAGACCAGCAAA+AGG + chr3_4:73158293-73158312 None:intergenic 35.0%
!! GGTCTTGTTATATGTGTTAC+CGG - chr3_4:73158299-73158318 Msa0520590:intron 35.0%
!! TGTGTTACCGGTTTATCTAA+AGG - chr3_4:73158311-73158330 Msa0520590:intron 35.0%
ATCCACACCTTTAGATAAAC+CGG + chr3_4:73158321-73158340 None:intergenic 35.0%
!! AACATATAGCACAGTTTTGG+CGG - chr3_4:73159180-73159199 Msa0520590:intron 35.0%
TGGGGATAACAATATGAAGT+TGG - chr3_4:73159511-73159530 Msa0520590:three_prime_UTR 35.0%
TTGATTTCATGGATTCTTGC+AGG + chr3_4:73159584-73159603 None:intergenic 35.0%
GATGAGTATGCTTGATTTCA+TGG + chr3_4:73159595-73159614 None:intergenic 35.0%
GAAGAATTTCGAAGATTCTC+TGG - chr3_4:73159620-73159639 Msa0520590:intron 35.0%
TTCATCCGAATTGCAAAACA+AGG - chr3_4:73159709-73159728 Msa0520590:intron 35.0%
TTCTTATAAATAGGACCGGA+GGG + chr3_4:73159754-73159773 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr3_4:73159755-73159774 None:intergenic 35.0%
ATATTTATTGCTACTCCCTC+CGG + chr3_4:73159869-73159888 None:intergenic 35.0%
AGATGCTTTACATGTTCGAT+AGG - chr3_4:73159970-73159989 Msa0520590:three_prime_UTR 35.0%
TTAGTCATGTAGTCACTGAA+GGG - chr3_4:73160056-73160075 Msa0520590:intron 35.0%
! TGTTAGCATGTCTGTTGATT+TGG - chr3_4:73160414-73160433 Msa0520590:three_prime_UTR 35.0%
! TGATGCTTGATGACATTTCA+GGG - chr3_4:73160452-73160471 Msa0520590:three_prime_UTR 35.0%
! TTTTGTCTTTTCAGTGGAGT+TGG - chr3_4:73160797-73160816 Msa0520590:three_prime_UTR 35.0%
!! CTCTAAGACACACAATTACA+TGG + chr3_4:73160833-73160852 None:intergenic 35.0%
CATGTAATTGTGTGTCTTAG+AGG - chr3_4:73160831-73160850 Msa0520590:three_prime_UTR 35.0%
GATAACAAACTAAAGACAGG+TGG + chr3_4:73161029-73161048 None:intergenic 35.0%
AGAAGGTTATTGGGTGTAAT+CGG + chr3_4:73161144-73161163 None:intergenic 35.0%
ATAGAGTCCAGAAGGTTATT+GGG + chr3_4:73161153-73161172 None:intergenic 35.0%
CTCTATCTGTTGGTCAATAT+CGG - chr3_4:73161167-73161186 Msa0520590:three_prime_UTR 35.0%
ACTGAAAGAGTCTGTGTAAA+TGG + chr3_4:73161211-73161230 None:intergenic 35.0%
GAAAGGTTGTTCTCAATTTG+TGG - chr3_4:73161333-73161352 Msa0520590:CDS 35.0%
TGAAAAACGTTCTTGAGGAA+GGG + chr3_4:73161500-73161519 None:intergenic 35.0%
!! AGAACGTTTTTCAGCCATAA+CGG - chr3_4:73161507-73161526 Msa0520590:intron 35.0%
GAAGACATGTAAAACCGTTA+TGG + chr3_4:73161524-73161543 None:intergenic 35.0%
! TAACGGTTTTACATGTCTTC+AGG - chr3_4:73161524-73161543 Msa0520590:intron 35.0%
! TTTTACATGTCTTCAGGTGT+TGG - chr3_4:73161530-73161549 Msa0520590:intron 35.0%
TCATTCAGATTCAAGACATG+CGG - chr3_4:73161739-73161758 Msa0520590:CDS 35.0%
TCGATCAGTTTACTCAAGTA+AGG - chr3_4:73161769-73161788 Msa0520590:CDS 35.0%
TTACTCAAGTAAGGAAACAG+CGG - chr3_4:73161778-73161797 Msa0520590:CDS 35.0%
GAGTTATTACTTAGGGCATA+AGG - chr3_4:73161902-73161921 Msa0520590:five_prime_UTR 35.0%
GGACTGTGAATACAAGAAAT+GGG - chr3_4:73162049-73162068 Msa0520590:five_prime_UTR 35.0%
GACTGTGAATACAAGAAATG+GGG - chr3_4:73162050-73162069 Msa0520590:five_prime_UTR 35.0%
ACTGTGAATACAAGAAATGG+GGG - chr3_4:73162051-73162070 Msa0520590:five_prime_UTR 35.0%
!! GATAACCTTTTGAAGACTTG+GGG + chr3_4:73162107-73162126 None:intergenic 35.0%
! TTACGAACCACTTGAACTTT+TGG - chr3_4:73162238-73162257 Msa0520590:five_prime_UTR 35.0%
AAAGGGGAATCTGGACAAAA+GGG + chr3_4:73157860-73157879 None:intergenic 40.0%
AAAAGGGGAATCTGGACAAA+AGG + chr3_4:73157861-73157880 None:intergenic 40.0%
AAAAGCTTCTCTTCATCACC+AGG + chr3_4:73158061-73158080 None:intergenic 40.0%
!!! GTTGTTCACTGTTTTAGTGG+TGG - chr3_4:73158124-73158143 Msa0520590:three_prime_UTR 40.0%
AGGATGAAACAGGAGACATT+TGG + chr3_4:73158247-73158266 None:intergenic 40.0%
!! TACCGGTTTATCTAAAGGTG+TGG - chr3_4:73158316-73158335 Msa0520590:intron 40.0%
TACATTGAGGATGCAGATTG+GGG + chr3_4:73158604-73158623 None:intergenic 40.0%
GTACATTGAGGATGCAGATT+GGG + chr3_4:73158605-73158624 None:intergenic 40.0%
AGTACATTGAGGATGCAGAT+TGG + chr3_4:73158606-73158625 None:intergenic 40.0%
GCATCCTCAATGTACTCATT+TGG - chr3_4:73158610-73158629 Msa0520590:intron 40.0%
TCCTCAATGTACTCATTTGG+TGG - chr3_4:73158613-73158632 Msa0520590:intron 40.0%
ACCACCAAATGAGTACATTG+AGG + chr3_4:73158617-73158636 None:intergenic 40.0%
AGTGTATCGCAGAACAATAG+TGG + chr3_4:73158912-73158931 None:intergenic 40.0%
CCATGATCATGGTTCATAAG+AGG + chr3_4:73159099-73159118 None:intergenic 40.0%
CCTCTTATGAACCATGATCA+TGG - chr3_4:73159096-73159115 Msa0520590:intron 40.0%
TTTGAGCATGCAGTAAAGCA+TGG - chr3_4:73159210-73159229 Msa0520590:intron 40.0%
GTGGATAGTGTCAGGAAAAA+TGG - chr3_4:73159273-73159292 Msa0520590:three_prime_UTR 40.0%
CTTGAAGTCATGCACTATAC+AGG - chr3_4:73159352-73159371 Msa0520590:intron 40.0%
AATATCACAAAAGCCGTGTC+AGG + chr3_4:73159380-73159399 None:intergenic 40.0%
! GATGATTTTAGACTGCTTCC+CGG - chr3_4:73159533-73159552 Msa0520590:three_prime_UTR 40.0%
! ATGATTTTAGACTGCTTCCC+GGG - chr3_4:73159534-73159553 Msa0520590:three_prime_UTR 40.0%
ATTTCCAGCATTTGTGTACC+CGG + chr3_4:73159555-73159574 None:intergenic 40.0%
TGCAGAGTCTAACAGAAGTT+TGG - chr3_4:73159643-73159662 Msa0520590:intron 40.0%
AGTTTGGACTCAAGTTTGTC+TGG - chr3_4:73159659-73159678 Msa0520590:intron 40.0%
TTTATGCGATATACTCCCTC+CGG - chr3_4:73159736-73159755 Msa0520590:intron 40.0%
CAGTTTCCTCTGTTTCAGTT+AGG - chr3_4:73159910-73159929 Msa0520590:three_prime_UTR 40.0%
!! ATCCAAAGAAGGTGCTAGTT+TGG - chr3_4:73160006-73160025 Msa0520590:intron 40.0%
CATTACAGCCAACAAACCAT+TGG + chr3_4:73160036-73160055 None:intergenic 40.0%
GTTAGTCATGTAGTCACTGA+AGG - chr3_4:73160055-73160074 Msa0520590:intron 40.0%
!! TAGAAGCACTCACTGTAATG+AGG + chr3_4:73160117-73160136 None:intergenic 40.0%
TGTCTTCCAGAAGATGTACA+GGG + chr3_4:73160257-73160276 None:intergenic 40.0%
ATGTCTTCCAGAAGATGTAC+AGG + chr3_4:73160258-73160277 None:intergenic 40.0%
ATGATATTTCTCAGCCAGTG+TGG - chr3_4:73160353-73160372 Msa0520590:three_prime_UTR 40.0%
GTGGATTCTCAAAACAGCTA+AGG - chr3_4:73160372-73160391 Msa0520590:three_prime_UTR 40.0%
CTAAGGAGAAACAAGTGCAA+AGG - chr3_4:73160389-73160408 Msa0520590:three_prime_UTR 40.0%
!! GTTGATTTGGCAAGACAAGT+TGG - chr3_4:73160427-73160446 Msa0520590:three_prime_UTR 40.0%
CTGAAATGTCATCAAGCATC+AGG + chr3_4:73160453-73160472 None:intergenic 40.0%
! CTGATGCTTGATGACATTTC+AGG - chr3_4:73160451-73160470 Msa0520590:three_prime_UTR 40.0%
CAAGAAAAGGAGGGAAATCT+AGG + chr3_4:73160499-73160518 None:intergenic 40.0%
! CTAGATTTCCCTCCTTTTCT+TGG - chr3_4:73160497-73160516 Msa0520590:three_prime_UTR 40.0%
CAAGAAAATGAGGGAAGTCT+AGG + chr3_4:73160590-73160609 None:intergenic 40.0%
AAAAGTCCATGACGATCTTC+AGG - chr3_4:73160656-73160675 Msa0520590:three_prime_UTR 40.0%
AAAGTCCATGACGATCTTCA+GGG - chr3_4:73160657-73160676 Msa0520590:three_prime_UTR 40.0%
CAGGGCAGTAAAAGTGAAAT+TGG - chr3_4:73160675-73160694 Msa0520590:three_prime_UTR 40.0%
CACTGAAAAGACAAAAGTGG+AGG + chr3_4:73160793-73160812 None:intergenic 40.0%
!! CTCCACTTTTGTCTTTTCAG+TGG - chr3_4:73160791-73160810 Msa0520590:three_prime_UTR 40.0%
CTCCACTGAAAAGACAAAAG+TGG + chr3_4:73160796-73160815 None:intergenic 40.0%
GATTACACCCAATAACCTTC+TGG - chr3_4:73161143-73161162 Msa0520590:three_prime_UTR 40.0%
GATAGAGTCCAGAAGGTTAT+TGG + chr3_4:73161154-73161173 None:intergenic 40.0%
GAGAACAACCTTTCTGTTAG+AGG + chr3_4:73161327-73161346 None:intergenic 40.0%
TTCTCAATTTGTGGCCTGAT+GGG - chr3_4:73161342-73161361 Msa0520590:CDS 40.0%
CGGGAAAAAATATACCCATC+AGG + chr3_4:73161359-73161378 None:intergenic 40.0%
! GGAAGAGTATGGTGAGAAAA+TGG + chr3_4:73161452-73161471 None:intergenic 40.0%
CTGAAAAACGTTCTTGAGGA+AGG + chr3_4:73161501-73161520 None:intergenic 40.0%
ATGGCTGAAAAACGTTCTTG+AGG + chr3_4:73161505-73161524 None:intergenic 40.0%
TCAGGTAAAAGGAAACTTGC+AGG - chr3_4:73161572-73161591 Msa0520590:intron 40.0%
TGTCGTCACTAATGAGACAA+TGG - chr3_4:73161660-73161679 Msa0520590:CDS 40.0%
CACTAATGAGACAATGGATG+TGG - chr3_4:73161666-73161685 Msa0520590:CDS 40.0%
! GATGTGGCGATTTTTGTGAT+AGG - chr3_4:73161682-73161701 Msa0520590:CDS 40.0%
GAATCGCCACATCTATTTCA+AGG + chr3_4:73161721-73161740 None:intergenic 40.0%
! TGGAACATGTCACTTGAGTA+GGG - chr3_4:73162014-73162033 Msa0520590:five_prime_UTR 40.0%
! GTATTCACAGTCCCCATTTT+GGG + chr3_4:73162042-73162061 None:intergenic 40.0%
! TGTATTCACAGTCCCCATTT+TGG + chr3_4:73162043-73162062 None:intergenic 40.0%
GGGACTGTGAATACAAGAAA+TGG - chr3_4:73162048-73162067 Msa0520590:five_prime_UTR 40.0%
GAATACAAGAAATGGGGGAT+TGG - chr3_4:73162056-73162075 Msa0520590:five_prime_UTR 40.0%
!! AAATGGGGGATTGGCTTATA+TGG - chr3_4:73162065-73162084 Msa0520590:five_prime_UTR 40.0%
TTACACCCCAAGTCTTCAAA+AGG - chr3_4:73162099-73162118 Msa0520590:intron 40.0%
TACACACCCAAGTCTTGAAA+AGG - chr3_4:73162141-73162160 Msa0520590:five_prime_UTR 40.0%
GAATATAGTGCAGTGGTGTG+AGG + chr3_4:73157746-73157765 None:intergenic 45.0%
GGAGTGTGCAGAAGAAGTAA+AGG + chr3_4:73157793-73157812 None:intergenic 45.0%
AAGGGGAATCTGGACAAAAG+GGG + chr3_4:73157859-73157878 None:intergenic 45.0%
GTAACAGTTATGGGTGGTGA+GGG - chr3_4:73158146-73158165 Msa0520590:three_prime_UTR 45.0%
TTGAAGTTGCGAGTGGCAAA+GGG - chr3_4:73158174-73158193 Msa0520590:three_prime_UTR 45.0%
ACAGGAGACATTTGGTCCAA+TGG + chr3_4:73158239-73158258 None:intergenic 45.0%
AATTGCGGAGAGGATGAAAC+AGG + chr3_4:73158257-73158276 None:intergenic 45.0%
! ATTTGATGGCAATTGCGGAG+AGG + chr3_4:73158267-73158286 None:intergenic 45.0%
! GGAGCATTTGATGGCAATTG+CGG + chr3_4:73158272-73158291 None:intergenic 45.0%
!! CCAGCAAAAGGAGCATTTGA+TGG + chr3_4:73158281-73158300 None:intergenic 45.0%
! CCATCAAATGCTCCTTTTGC+TGG - chr3_4:73158278-73158297 Msa0520590:intron 45.0%
TTTGGCAGAAGCAAGGAATC+AGG - chr3_4:73158541-73158560 Msa0520590:three_prime_UTR 45.0%
AGAAGCAAGGAATCAGGTCA+TGG - chr3_4:73158547-73158566 Msa0520590:intron 45.0%
ATGGAGGCTACAGAGAGATT+AGG - chr3_4:73158566-73158585 Msa0520590:intron 45.0%
CATCAGCATGATGCTGTAGT+AGG - chr3_4:73158688-73158707 Msa0520590:three_prime_UTR 45.0%
GCAAGCAACAACCATGATCA+TGG + chr3_4:73159110-73159129 None:intergenic 45.0%
ATCCATGCTGTGGAAACAGA+TGG + chr3_4:73159132-73159151 None:intergenic 45.0%
CTACGGAAATATCCATGCTG+TGG + chr3_4:73159142-73159161 None:intergenic 45.0%
AACCCAGTGTGACAACAAAG+AGG + chr3_4:73159248-73159267 None:intergenic 45.0%
! TCTTTGTTGTCACACTGGGT+TGG - chr3_4:73159247-73159266 Msa0520590:three_prime_UTR 45.0%
!! GTTGGTTTGTGGATAGTGTC+AGG - chr3_4:73159265-73159284 Msa0520590:three_prime_UTR 45.0%
CACTATACAGGAACCTGACA+CGG - chr3_4:73159364-73159383 Msa0520590:intron 45.0%
TTTCCAGCATTTGTGTACCC+GGG + chr3_4:73159554-73159573 None:intergenic 45.0%
AATGCCTGGATCAACGTAGA+TGG + chr3_4:73159690-73159709 None:intergenic 45.0%
TGCAATTCGGATGAAATGCC+TGG + chr3_4:73159704-73159723 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr3_4:73159850-73159869 Msa0520590:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr3_4:73159851-73159870 Msa0520590:intron 45.0%
! GCGTATGACTGAAGTGTTCT+CGG - chr3_4:73159936-73159955 Msa0520590:three_prime_UTR 45.0%
GCTGAAACTGCATCCAAAGA+AGG - chr3_4:73159995-73160014 Msa0520590:intron 45.0%
TGCCAAACTAGCACCTTCTT+TGG + chr3_4:73160011-73160030 None:intergenic 45.0%
! TTGGCAGACCAATGGTTTGT+TGG - chr3_4:73160025-73160044 Msa0520590:intron 45.0%
!!! GCTGTTTTGAGAATCCACAC+TGG + chr3_4:73160370-73160389 None:intergenic 45.0%
! GCTTGATGACATTTCAGGGA+AGG - chr3_4:73160456-73160475 Msa0520590:three_prime_UTR 45.0%
GGTTATTGGGTGTAATCGGA+CGG + chr3_4:73161140-73161159 None:intergenic 45.0%
ACCTTCTGGACTCTATCTGT+TGG - chr3_4:73161157-73161176 Msa0520590:three_prime_UTR 45.0%
ACCAACAGATAGAGTCCAGA+AGG + chr3_4:73161161-73161180 None:intergenic 45.0%
TGATGCAAAAGGGGATGAGA+AGG - chr3_4:73161269-73161288 Msa0520590:three_prime_UTR 45.0%
CCTTTCTGTTAGAGGACATG+TGG + chr3_4:73161319-73161338 None:intergenic 45.0%
CCACATGTCCTCTAACAGAA+AGG - chr3_4:73161316-73161335 Msa0520590:exon 45.0%
GTTCTCAATTTGTGGCCTGA+TGG - chr3_4:73161341-73161360 Msa0520590:CDS 45.0%
!! GCCTAGCCTTGAAATAGATG+TGG - chr3_4:73161712-73161731 Msa0520590:CDS 45.0%
GCCACATCTATTTCAAGGCT+AGG + chr3_4:73161716-73161735 None:intergenic 45.0%
! GTGGAACATGTCACTTGAGT+AGG - chr3_4:73162013-73162032 Msa0520590:five_prime_UTR 45.0%
! TTGAGTAGGGTGCCCAAAAT+GGG - chr3_4:73162027-73162046 Msa0520590:five_prime_UTR 45.0%
!!! AATATTAAAAATTGTTTTTT+TGG - chr3_4:73157967-73157986 Msa0520590:three_prime_UTR 5.0%
GAGAGGGTAAAAGGGGAATC+TGG + chr3_4:73157869-73157888 None:intergenic 50.0%
GTGGTGGTAACAGTTATGGG+TGG - chr3_4:73158140-73158159 Msa0520590:three_prime_UTR 50.0%
GGTAACAGTTATGGGTGGTG+AGG - chr3_4:73158145-73158164 Msa0520590:three_prime_UTR 50.0%
GGTAGAGTTGAAGTTGCGAG+TGG - chr3_4:73158167-73158186 Msa0520590:three_prime_UTR 50.0%
GTTGAAGTTGCGAGTGGCAA+AGG - chr3_4:73158173-73158192 Msa0520590:three_prime_UTR 50.0%
!! TTGGCGTTTTGGCAGAAGCA+AGG - chr3_4:73158534-73158553 Msa0520590:three_prime_UTR 50.0%
AGCAAGGAATCAGGTCATGG+AGG - chr3_4:73158550-73158569 Msa0520590:intron 50.0%
GAGGCTACAGAGAGATTAGG+TGG - chr3_4:73158569-73158588 Msa0520590:intron 50.0%
GATGCAGATTGGGGCTATAC+TGG + chr3_4:73158595-73158614 None:intergenic 50.0%
CAGCATGATGCTGTAGTAGG+AGG - chr3_4:73158691-73158710 Msa0520590:three_prime_UTR 50.0%
TGCCATCTGTTTCCACAGCA+TGG - chr3_4:73159127-73159146 Msa0520590:intron 50.0%
! TGGCCTCTTTGTTGTCACAC+TGG - chr3_4:73159242-73159261 Msa0520590:three_prime_UTR 50.0%
! GGCCTCTTTGTTGTCACACT+GGG - chr3_4:73159243-73159262 Msa0520590:three_prime_UTR 50.0%
!! TGTCACACTGGGTTGGTTTG+TGG - chr3_4:73159254-73159273 Msa0520590:three_prime_UTR 50.0%
TGCTCCATCTACGTTGATCC+AGG - chr3_4:73159683-73159702 Msa0520590:intron 50.0%
! CGCTAGCCTAACTGAAACAG+AGG + chr3_4:73159919-73159938 None:intergenic 50.0%
! GTGCTAGTTTGGCAGACCAA+TGG - chr3_4:73160017-73160036 Msa0520590:intron 50.0%
AACGGTCCCTGTACATCTTC+TGG - chr3_4:73160248-73160267 Msa0520590:intron 50.0%
TACTGCCCTGAAGATCGTCA+TGG + chr3_4:73160665-73160684 None:intergenic 50.0%
TTGGGTGTAATCGGACGGAT+CGG + chr3_4:73161135-73161154 None:intergenic 50.0%
TCTCACCATACTCTTCCCTG+TGG - chr3_4:73161455-73161474 Msa0520590:intron 50.0%
CAGATTCAAGACATGCGGAC+AGG - chr3_4:73161744-73161763 Msa0520590:CDS 50.0%
GAAATGTTGAAGCGCGTGAG+TGG - chr3_4:73161857-73161876 Msa0520590:five_prime_UTR 50.0%
! CTTGAGTAGGGTGCCCAAAA+TGG - chr3_4:73162026-73162045 Msa0520590:five_prime_UTR 50.0%
! TGAGTAGGGTGCCCAAAATG+GGG - chr3_4:73162028-73162047 Msa0520590:five_prime_UTR 50.0%
GCTATAGCACTGCTGCACAG+CGG - chr3_4:73158966-73158985 Msa0520590:intron 55.0%
CTTCCCGGGTACACAAATGC+TGG - chr3_4:73159548-73159567 Msa0520590:three_prime_UTR 55.0%
! AATGGTGTCAGAAGTCGCCG+TGG - chr3_4:73160735-73160754 Msa0520590:three_prime_UTR 55.0%
TGACCTGCATTCGACGACCA+CGG + chr3_4:73160755-73160774 None:intergenic 55.0%
CCATACTCTTCCCTGTGGAC+CGG - chr3_4:73161460-73161479 Msa0520590:intron 55.0%
TCTCGGAAAACCGGTCCACA+GGG + chr3_4:73161473-73161492 None:intergenic 55.0%
ATCTCGGAAAACCGGTCCAC+AGG + chr3_4:73161474-73161493 None:intergenic 55.0%
!! GTGGACCGGTTTTCCGAGAT+CGG - chr3_4:73161474-73161493 Msa0520590:intron 55.0%
AAGGGCCGATCTCGGAAAAC+CGG + chr3_4:73161482-73161501 None:intergenic 55.0%
TCTTGAGGAAGGGCCGATCT+CGG + chr3_4:73161490-73161509 None:intergenic 55.0%
AGTAAGGAAACAGCGGAGCG+TGG - chr3_4:73161785-73161804 Msa0520590:CDS 55.0%
GTAAGGAAACAGCGGAGCGT+GGG - chr3_4:73161786-73161805 Msa0520590:CDS 55.0%
!! CGAGTGGCAAAGGGTGTTCG+AGG - chr3_4:73158183-73158202 Msa0520590:three_prime_UTR 60.0%
CCGGTCCACAGGGAAGAGTA+TGG + chr3_4:73161463-73161482 None:intergenic 60.0%
TCGCCGTGGTCGTCGAATGC+AGG - chr3_4:73160749-73160768 Msa0520590:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73157690 73162294 73157690 ID=Msa0520590;Name=Msa0520590
chr3_4 mRNA 73157690 73162294 73157690 ID=Msa0520590-mRNA-1;Parent=Msa0520590;Name=Msa0520590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=445|1|1|1|0.87|0.66|9|2398|98
chr3_4 exon 73157690 73158280 73157690 ID=Msa0520590-mRNA-1:exon:20433;Parent=Msa0520590-mRNA-1
chr3_4 exon 73158409 73158562 73158409 ID=Msa0520590-mRNA-1:exon:20432;Parent=Msa0520590-mRNA-1
chr3_4 exon 73158647 73158864 73158647 ID=Msa0520590-mRNA-1:exon:20431;Parent=Msa0520590-mRNA-1
chr3_4 exon 73159214 73159342 73159214 ID=Msa0520590-mRNA-1:exon:20430;Parent=Msa0520590-mRNA-1
chr3_4 exon 73159507 73159617 73159507 ID=Msa0520590-mRNA-1:exon:20429;Parent=Msa0520590-mRNA-1
chr3_4 exon 73159861 73159992 73159861 ID=Msa0520590-mRNA-1:exon:20428;Parent=Msa0520590-mRNA-1
chr3_4 exon 73160254 73161435 73160254 ID=Msa0520590-mRNA-1:exon:20427;Parent=Msa0520590-mRNA-1
chr3_4 exon 73161652 73162114 73161652 ID=Msa0520590-mRNA-1:exon:20426;Parent=Msa0520590-mRNA-1
chr3_4 exon 73162135 73162294 73162135 ID=Msa0520590-mRNA-1:exon:20425;Parent=Msa0520590-mRNA-1
chr3_4 five_prime_UTR 73162135 73162294 73162135 ID=Msa0520590-mRNA-1:five_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 five_prime_UTR 73161830 73162114 73161830 ID=Msa0520590-mRNA-1:five_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 CDS 73161652 73161829 73161652 ID=Msa0520590-mRNA-1:cds;Parent=Msa0520590-mRNA-1
chr3_4 CDS 73161317 73161435 73161317 ID=Msa0520590-mRNA-1:cds;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73160254 73161316 73160254 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73159861 73159992 73159861 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73159507 73159617 73159507 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73159214 73159342 73159214 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73158647 73158864 73158647 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73158409 73158562 73158409 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
chr3_4 three_prime_UTR 73157690 73158280 73157690 ID=Msa0520590-mRNA-1:three_prime_utr;Parent=Msa0520590-mRNA-1
Gene Sequence

>Msa0520590

ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGAACTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGA
Protein sequence

>Msa0520590

MGGEGRVEVASGKGCSRLFSSSIRTLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISFPSKSS*