AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576420 MtrunA17_Chr8g0390401 93.496 738 25 7 1 717 1 736 0.0 1403
Msa0576420 MtrunA17_Chr2g0331251 50.358 419 195 1 257 662 140 558 1.32e-142 429
Msa0576420 MtrunA17_Chr8g0357041 47.642 424 203 3 253 659 80 501 7.58e-142 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576420 AT2G32230.2 49.779 452 195 4 238 657 119 570 2.93e-141 426
Msa0576420 AT2G32230.1 49.779 452 195 4 238 657 119 570 2.93e-141 426
Msa0576420 AT4G21900.1 46.404 431 202 5 253 655 144 573 5.12e-129 395
Msa0576420 AT2G16650.1 46.512 430 201 6 257 658 89 517 1.18e-120 371
Msa0576420 AT2G16650.2 46.539 419 195 6 268 658 1 418 1.34e-115 355
Msa0576420 AT5G60430.3 42.718 103 52 1 409 504 1 103 8.64e-12 64.3
Msa0576420 AT5G60430.1 42.718 103 52 1 409 504 1 103 8.64e-12 64.3
Msa0576420 AT5G60430.4 42.718 103 52 1 409 504 1 103 8.64e-12 64.3
Msa0576420 AT5G60430.2 42.718 103 52 1 409 504 1 103 8.64e-12 64.3

Find 153 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCATTTGTTTCAACTTC+TGG 0.179107 4_1:+80510982 Msa0576420:CDS
AGCTAAATTGCGGGTTTCTT+TGG 0.206390 4_1:+80509056 Msa0576420:CDS
TCCTTGTTCTGTTGTTATTC+AGG 0.221050 4_1:+80511290 Msa0576420:CDS
GTCTCATCTAATAATTTAAA+TGG 0.232728 4_1:+80509261 Msa0576420:CDS
TTCTAAAAGAGGGGATTTAA+AGG 0.242554 4_1:+80509086 Msa0576420:CDS
TTCATCTCATACTGACAAAA+AGG 0.243237 4_1:+80508906 Msa0576420:CDS
ACTCAATGCGCTGATTAATA+TGG 0.249923 4_1:-80512603 None:intergenic
GTGTATCACACGTGCTAAAT+TGG 0.253319 4_1:+80511541 Msa0576420:CDS
GCTTCCAACTCAGGTTCTTC+AGG 0.277661 4_1:-80509708 None:intergenic
TGTTTGTGTTGCAGAGATTA+AGG 0.283516 4_1:-80508553 None:intergenic
GATGAGAAACCTCTGCAAAA+TGG 0.286182 4_1:+80512136 Msa0576420:intron
TTATCTACTTACTGTAATAA+TGG 0.290091 4_1:+80509630 Msa0576420:CDS
CTTTGTTCTTCTGCAGCTAT+TGG 0.296874 4_1:+80509186 Msa0576420:CDS
GGATATTGCTGAATCAAATA+AGG 0.329065 4_1:-80509118 None:intergenic
GATCATTTGTTTCAACTTCT+GGG 0.330258 4_1:+80510983 Msa0576420:CDS
CTGCTGATTTGATTGTTGTT+TGG 0.333467 4_1:+80509826 Msa0576420:CDS
TCATTAAGTTCTGCTTCAAT+TGG 0.354266 4_1:-80511497 None:intergenic
ATGAGAAACCTCTGCAAAAT+GGG 0.361773 4_1:+80512137 Msa0576420:CDS
TCAACCAATGCCTTGTTGAT+TGG 0.362207 4_1:-80510739 None:intergenic
AATCCTAGGTTAAGGTCTTA+TGG 0.368995 4_1:+80509600 Msa0576420:CDS
GCAAAATTCTCAGTTTCAAC+AGG 0.370160 4_1:-80510050 None:intergenic
ACATGTAGATTAGATTAGAT+TGG 0.379029 4_1:+80508611 Msa0576420:five_prime_UTR
CTGATGCCTTTCTTTCCACT+TGG 0.380390 4_1:-80511020 None:intergenic
ATGGGATAAAGGATTGATAA+TGG 0.380414 4_1:+80509887 Msa0576420:CDS
CAGAAATGGATTGAATACTA+TGG 0.384397 4_1:+80510444 Msa0576420:intron
GGATAAGAGGAATGGGATAA+TGG 0.395428 4_1:+80509398 Msa0576420:CDS
TAGGGATAAATCCTAGGTTA+AGG 0.401557 4_1:+80509592 Msa0576420:CDS
ATGATCTCTCATCTCATCAT+TGG 0.401872 4_1:-80510966 None:intergenic
TCAACAAGGCATTGGTTGAT+AGG 0.403849 4_1:+80510743 Msa0576420:CDS
CCTGCGATATGAAACTAAAC+TGG 0.406689 4_1:-80512415 None:intergenic
ACCTCTGCAAAATGGGGAAC+AGG 0.408493 4_1:+80512144 Msa0576420:CDS
GGACAGGTTGGTTGGGTAAA+GGG 0.416147 4_1:+80509943 Msa0576420:CDS
CTGTCCTAGTTTAACACCTT+GGG 0.417066 4_1:-80509139 None:intergenic
ATAAGTGGAAACTTCTTTGA+AGG 0.417993 4_1:-80510673 None:intergenic
CGTGAAGAACATTGGATTGA+AGG 0.423729 4_1:-80508811 None:intergenic
GATACAAAAGAACAGTATAA+TGG 0.430667 4_1:-80509164 None:intergenic
CTTGGGTTGAAATTGATTGA+AGG 0.444987 4_1:-80508781 None:intergenic
GCTAAATTGGACATGGTTAG+TGG 0.446480 4_1:+80511554 Msa0576420:CDS
CATGTAGATTAGATTAGATT+GGG 0.448936 4_1:+80508612 Msa0576420:five_prime_UTR
TGGCATGGGACAGGTTGGTT+GGG 0.450920 4_1:+80509936 Msa0576420:CDS
CAAACCAGTGTAGGAAATGA+TGG 0.453031 4_1:+80509981 Msa0576420:CDS
TACATTTGCCTTATCGTATG+TGG 0.453458 4_1:-80508653 None:intergenic
AGTTTCTTACTTGAAATGTC+TGG 0.453497 4_1:-80510121 None:intergenic
TGATGCCTTTCTTTCCACTT+GGG 0.455973 4_1:-80511019 None:intergenic
GGGACAGGTTGGTTGGGTAA+AGG 0.459252 4_1:+80509942 Msa0576420:CDS
TTGGTTGTTGTGTCAAGTGG+GGG 0.462745 4_1:-80508838 None:intergenic
GGCGTATCAAAGGAGACAAA+AGG 0.463022 4_1:+80510710 Msa0576420:CDS
CCAGTTTAGTTTCATATCGC+AGG 0.475696 4_1:+80512415 Msa0576420:three_prime_UTR
TGTTCTTCTGCAGCTATTGG+CGG 0.477046 4_1:+80509189 Msa0576420:CDS
TCTAAAAGAGGGGATTTAAA+GGG 0.478557 4_1:+80509087 Msa0576420:CDS
GTTGGTTGGGTAAAGGGAAA+TGG 0.480815 4_1:+80509949 Msa0576420:CDS
GTTGAAATTGATTGAAGGGA+AGG 0.480985 4_1:-80508776 None:intergenic
ATTGACATCTGTGGCTAGAA+TGG 0.481180 4_1:+80509512 Msa0576420:CDS
TTTGGTTGTTGTGTCAAGTG+GGG 0.481612 4_1:-80508839 None:intergenic
GCTGTCCTAGTTTAACACCT+TGG 0.481887 4_1:-80509140 None:intergenic
CAACTCTGCAGCCTCAAGTT+CGG 0.482797 4_1:-80512291 None:intergenic
ATACTCTATGCAACACCTAC+AGG 0.482929 4_1:+80510781 Msa0576420:CDS
TTTAGCAGCCACATACGATA+AGG 0.482995 4_1:+80508645 Msa0576420:five_prime_UTR
ATGATAAGGATAAGAGGAAT+GGG 0.485314 4_1:+80509391 Msa0576420:CDS
AATGATAAGGATAAGAGGAA+TGG 0.485631 4_1:+80509390 Msa0576420:CDS
GCATCTATCACTGCTTCAAA+AGG 0.486413 4_1:-80510468 None:intergenic
CGATTCGGTTTCTCTGATGC+TGG 0.490885 4_1:+80511246 Msa0576420:CDS
AAACCCGCAATTTAGCTTGT+GGG 0.490965 4_1:-80509050 None:intergenic
CTACAGGATCAAATGATGAT+TGG 0.494498 4_1:+80510797 Msa0576420:CDS
CTATGATGCAAAACAATAAG+TGG 0.496606 4_1:-80510688 None:intergenic
GAGGCTGCAGAGTTGATTAG+TGG 0.497760 4_1:+80512299 Msa0576420:three_prime_UTR
CTTCCAACTCAGGTTCTTCA+GGG 0.498182 4_1:-80509707 None:intergenic
AGATGAAGAAGAAGGAGAAG+AGG 0.499099 4_1:-80508890 None:intergenic
GAGGATGGCATGGGACAGGT+TGG 0.499348 4_1:+80509931 Msa0576420:CDS
GGTGGAGGATGGCATGGGAC+AGG 0.500466 4_1:+80509927 Msa0576420:CDS
ACATGAATGATAAGGATAAG+AGG 0.501905 4_1:+80509385 Msa0576420:CDS
CTCAAGAGTGCTTCCAACTC+AGG 0.503977 4_1:-80509717 None:intergenic
TGGATCAGTGTTCTAAAAGA+GGG 0.506420 4_1:+80509076 Msa0576420:CDS
TTTCTCATTACTTATAGCAA+TGG 0.507951 4_1:-80510087 None:intergenic
ATGGCATGGGACAGGTTGGT+TGG 0.508670 4_1:+80509935 Msa0576420:CDS
AGCAAAATCGCTTTAAGAGT+GGG 0.508909 4_1:+80509855 Msa0576420:CDS
TAAATGTTGTGGAGTGCAAT+TGG 0.509532 4_1:+80510010 Msa0576420:CDS
TTGGATCAGTGTTCTAAAAG+AGG 0.511467 4_1:+80509075 Msa0576420:CDS
TTGTTGCAGTTGCAGAGTGA+GGG 0.513267 4_1:-80508689 None:intergenic
TTGGGTTGAAATTGATTGAA+GGG 0.515957 4_1:-80508780 None:intergenic
TCTTCCCCAAGTGGAAAGAA+AGG 0.516386 4_1:+80511014 Msa0576420:CDS
TGAGAATATGTGTATGAGTA+AGG 0.518766 4_1:+80509470 Msa0576420:CDS
TCAGTATGAGATGAAGAAGA+AGG 0.520949 4_1:-80508898 None:intergenic
ATACGATAAGGCAAATGTAA+TGG 0.525285 4_1:+80508657 Msa0576420:exon
CATTCCATCATTTCCTACAC+TGG 0.529681 4_1:-80509985 None:intergenic
GCGTATCAAAGGAGACAAAA+GGG 0.537954 4_1:+80510711 Msa0576420:CDS
ATGATGAAGCAGAAAGAAGA+TGG 0.537993 4_1:+80511516 Msa0576420:CDS
AATAACGGTGGAGGATGGCA+TGG 0.538779 4_1:+80509921 Msa0576420:CDS
GATGCCTTTCTTTCCACTTG+GGG 0.541694 4_1:-80511018 None:intergenic
GAAACCCGCAATTTAGCTTG+TGG 0.542236 4_1:-80509051 None:intergenic
TGGTTGTTGTGTCAAGTGGG+GGG 0.543510 4_1:-80508837 None:intergenic
TGCAAAATAACGGTGGAGGA+TGG 0.543752 4_1:+80509916 Msa0576420:CDS
CAAGTGGAAAGAAAGGCATC+AGG 0.544258 4_1:+80511021 Msa0576420:CDS
TGTTGCAGTTGCAGAGTGAG+GGG 0.548413 4_1:-80508688 None:intergenic
ATTGTTGCAGTTGCAGAGTG+AGG 0.553833 4_1:-80508690 None:intergenic
AAGAAATATGCACTACAAAG+AGG 0.553943 4_1:+80509435 Msa0576420:CDS
GAGCAAAATCGCTTTAAGAG+TGG 0.555862 4_1:+80509854 Msa0576420:CDS
TGATGTTGAAAAGCACATGT+TGG 0.556500 4_1:+80509671 Msa0576420:CDS
ATGGAAGCAATGCAAAATAA+CGG 0.556927 4_1:+80509906 Msa0576420:CDS
GAATGGGATAATGGTGAGCG+AGG 0.558576 4_1:+80509407 Msa0576420:CDS
AACCCGCAATTTAGCTTGTG+GGG 0.559927 4_1:-80509049 None:intergenic
TTGCATCATAGGCGTATCAA+AGG 0.560624 4_1:+80510700 Msa0576420:CDS
TGTTCTTTGTTTGTGAATGT+CGG 0.561364 4_1:+80512722 Msa0576420:three_prime_UTR
CGACCTGCGAAAAGTGGAAG+TGG 0.563418 4_1:+80509216 Msa0576420:CDS
TAAGTGGAAACTTCTTTGAA+GGG 0.565681 4_1:-80510672 None:intergenic
ATATCCCAAGGTGTTAAACT+AGG 0.565875 4_1:+80509135 Msa0576420:CDS
GGTCTTCGACCTGCGAAAAG+TGG 0.570123 4_1:+80509210 Msa0576420:CDS
TAAACCAATCAACAAGGCAT+TGG 0.570466 4_1:+80510735 Msa0576420:CDS
CAGTTTAGTTTCATATCGCA+GGG 0.570836 4_1:+80512416 Msa0576420:three_prime_UTR
AGGGAGAAATACAAAGGCTA+AGG 0.571612 4_1:+80512435 Msa0576420:three_prime_UTR
GATGGAATGTGTAAATGTTG+TGG 0.572152 4_1:+80509999 Msa0576420:CDS
TACTAGAACTTTGAATGCAC+AGG 0.573536 4_1:+80509239 Msa0576420:CDS
CAAGTTCTTCAAACCAGTGT+AGG 0.574735 4_1:+80509972 Msa0576420:CDS
TACTAGAAAAGAGTCTGCAA+AGG 0.582764 4_1:+80512177 Msa0576420:CDS
ACCCGCAATTTAGCTTGTGG+GGG 0.583550 4_1:-80509048 None:intergenic
TGATAGTGACATGAATGATA+AGG 0.583884 4_1:+80509377 Msa0576420:CDS
TTTGATTCAGCAATATCCCA+AGG 0.585577 4_1:+80509123 Msa0576420:CDS
TTACAGTAAGTAGATAAAGC+AGG 0.586608 4_1:-80509624 None:intergenic
TAACAGCAGTAGCAGTTACA+CGG 0.590782 4_1:+80508951 Msa0576420:CDS
CCCGCAATTTAGCTTGTGGG+GGG 0.593676 4_1:-80509047 None:intergenic
GTCACCATCACTCATTGCCA+TGG 0.598569 4_1:-80509535 None:intergenic
ATCTGTGGCTAGAATGGCCA+TGG 0.598920 4_1:+80509518 Msa0576420:CDS
ATAACGGTGGAGGATGGCAT+GGG 0.600626 4_1:+80509922 Msa0576420:CDS
CACACGTGCTAAATTGGACA+TGG 0.604143 4_1:+80511547 Msa0576420:CDS
AGGAATCAGAAGAAGGCCAC+TGG 0.604583 4_1:+80511468 Msa0576420:intron
TGGTTGCAGGAATCAGAAGA+AGG 0.604739 4_1:+80511461 Msa0576420:intron
CAATCATCATTTGATCCTGT+AGG 0.609726 4_1:-80510796 None:intergenic
GCAATGCAAAATAACGGTGG+AGG 0.613704 4_1:+80509912 Msa0576420:CDS
GGCAATGAGTGATGGTGACA+AGG 0.615969 4_1:+80509539 Msa0576420:CDS
GGATCAGTGTTCTAAAAGAG+GGG 0.616326 4_1:+80509077 Msa0576420:CDS
TTGAGAGTAAGCATAAGAGC+TGG 0.616424 4_1:+80509735 Msa0576420:CDS
GACTCTTCAACAACATACAA+AGG 0.616484 4_1:+80511578 Msa0576420:CDS
TGAGAAACCTCTGCAAAATG+GGG 0.619135 4_1:+80512138 Msa0576420:CDS
AACAAAGAACATTTAAAACA+TGG 0.620277 4_1:-80512710 None:intergenic
ACCTGAATAACAACAGAACA+AGG 0.621468 4_1:-80511291 None:intergenic
ACAAGGCATTGGTTGATAGG+TGG 0.623654 4_1:+80510746 Msa0576420:CDS
GTACCCTGAAGAACCTGAGT+TGG 0.627372 4_1:+80509704 Msa0576420:CDS
TTCTTAGTTTATGCAACACA+TGG 0.628656 4_1:-80509776 None:intergenic
GAAATGACTTCTTCCCCAAG+TGG 0.634783 4_1:+80511005 Msa0576420:CDS
CTCGTTATTATCCGAACTTG+AGG 0.634891 4_1:+80512280 Msa0576420:three_prime_UTR
GGACCATAAGACCTTAACCT+AGG 0.639415 4_1:-80509603 None:intergenic
GAAAAGCACATGTTGGAACA+TGG 0.648794 4_1:+80509678 Msa0576420:CDS
TATCGCAGGGAGAAATACAA+AGG 0.650537 4_1:+80512429 Msa0576420:three_prime_UTR
ATGGCCATGGCAATGAGTGA+TGG 0.659856 4_1:+80509531 Msa0576420:CDS
CTTCAATTGGAATATGCCAG+TGG 0.661796 4_1:-80511484 None:intergenic
CCGCAATTTAGCTTGTGGGG+GGG 0.667914 4_1:-80509046 None:intergenic
ATAACAACAGAACAAGGAGG+CGG 0.677532 4_1:-80511285 None:intergenic
ATAAACTAAGAAGCAGTGTG+AGG 0.692717 4_1:+80509787 Msa0576420:CDS
GAAGCAATGCAAAATAACGG+TGG 0.696359 4_1:+80509909 Msa0576420:CDS
TGAAGCAGCATTGACATCTG+TGG 0.699676 4_1:+80509503 Msa0576420:CDS
AAGGGATAAACCAATCAACA+AGG 0.704437 4_1:+80510729 Msa0576420:CDS
GTACTTGTAAGTTGTAACAA+CGG 0.718942 4_1:-80508577 None:intergenic
TGAATAACAACAGAACAAGG+AGG 0.769709 4_1:-80511288 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTCTTATTATAATGT+AGG + chr4_1:80511066-80511085 Msa0576420:intron 10.0%
!! GAAGAAAAAAAATATATATA+GGG - chr4_1:80511213-80511232 None:intergenic 10.0%
!!! TTAAACAAATGAAGATTTTA+GGG + chr4_1:80509574-80509593 Msa0576420:CDS 15.0%
!! TGTATATATTTGATGAAAAA+AGG + chr4_1:80511090-80511109 Msa0576420:intron 15.0%
!! GGAAGAAAAAAAATATATAT+AGG - chr4_1:80511214-80511233 None:intergenic 15.0%
!!! TTTTTTTTCTTCCAAATTTT+AGG + chr4_1:80511221-80511240 Msa0576420:intron 15.0%
!!! AATTTTTTTAAACAGTACTA+TGG - chr4_1:80511337-80511356 None:intergenic 15.0%
!! ATAGTACTGTTTAAAAAAAT+TGG + chr4_1:80511336-80511355 Msa0576420:intron 15.0%
!! TAGTACTGTTTAAAAAAATT+GGG + chr4_1:80511337-80511356 Msa0576420:intron 15.0%
!!! TATTTTTGAGATTTATCTTT+TGG - chr4_1:80511692-80511711 None:intergenic 15.0%
!! GATAAATCTCAAAAATAAAA+TGG + chr4_1:80511695-80511714 Msa0576420:intron 15.0%
!!! TATTTTTGAGATTTATCTTT+TGG - chr4_1:80511692-80511711 None:intergenic 15.0%
!! GATAAATCTCAAAAATAAAA+TGG + chr4_1:80511695-80511714 Msa0576420:intron 15.0%
!! TTAAAAGTTAAGAGAATAAA+TGG - chr4_1:80511932-80511951 None:intergenic 15.0%
!!! TTTTGTTAAAATTTTAACAG+TGG + chr4_1:80512577-80512596 Msa0576420:three_prime_UTR 15.0%
!! GTCTCATCTAATAATTTAAA+TGG + chr4_1:80509261-80509280 Msa0576420:CDS 20.0%
!!! GTTAAACAAATGAAGATTTT+AGG + chr4_1:80509573-80509592 Msa0576420:CDS 20.0%
!! TTATCTACTTACTGTAATAA+TGG + chr4_1:80509630-80509649 Msa0576420:CDS 20.0%
!!! AAGGTTTAATTTTTGTTCTT+TGG + chr4_1:80511109-80511128 Msa0576420:intron 20.0%
!! TCTAAATTGTAATCAAAGAA+AGG - chr4_1:80511170-80511189 None:intergenic 20.0%
!! AAAATATAACATGACAATTG+TGG + chr4_1:80511441-80511460 Msa0576420:intron 20.0%
!! TCTTAAAATCTATACTTTAG+TGG - chr4_1:80511994-80512013 None:intergenic 20.0%
!!! AACAAAGAACATTTAAAACA+TGG - chr4_1:80512713-80512732 None:intergenic 20.0%
!!! GAGATTAAGGATTTTAATAG+AGG - chr4_1:80508543-80508562 None:intergenic 25.0%
! ACATGTAGATTAGATTAGAT+TGG + chr4_1:80508611-80508630 Msa0576420:five_prime_UTR 25.0%
! CATGTAGATTAGATTAGATT+GGG + chr4_1:80508612-80508631 Msa0576420:five_prime_UTR 25.0%
! GATACAAAAGAACAGTATAA+TGG - chr4_1:80509167-80509186 None:intergenic 25.0%
! TTTCTCATTACTTATAGCAA+TGG - chr4_1:80510090-80510109 None:intergenic 25.0%
! AGGTGATTAATAAGTATATC+AGG - chr4_1:80510295-80510314 None:intergenic 25.0%
! GAAATTATGAATTGCAGAAA+TGG + chr4_1:80510430-80510449 Msa0576420:intron 25.0%
! AATGCAAGGTAAAAAGAAAA+AGG - chr4_1:80510566-80510585 None:intergenic 25.0%
! AATATATATAGGGATTTCGA+TGG - chr4_1:80511203-80511222 None:intergenic 25.0%
!!! ACATTTACAAGGTTACTTTT+AGG + chr4_1:80511611-80511630 Msa0576420:intron 25.0%
!!! TTTTGGTTAGTAATATGAGT+TGG - chr4_1:80511675-80511694 None:intergenic 25.0%
!!! GTACACTGTATATTACTTTT+AGG + chr4_1:80511754-80511773 Msa0576420:intron 25.0%
!!! ATATTACTTTTAGGACGATA+TGG + chr4_1:80511763-80511782 Msa0576420:intron 25.0%
!!! TTTTGGTTAGTAATATGAGT+TGG - chr4_1:80511675-80511694 None:intergenic 25.0%
! TTAGTGGCATATATTATGAA+CGG - chr4_1:80511978-80511997 None:intergenic 25.0%
!! TTTTATGTTGTCACAATTGA+TGG + chr4_1:80512053-80512072 Msa0576420:intron 25.0%
! TAATCAAAGGAAAAGAAAGT+GGG - chr4_1:80512116-80512135 None:intergenic 25.0%
! GTCAATCACAAAAAAATGAA+CGG + chr4_1:80512220-80512239 Msa0576420:CDS 25.0%
! GAAAGAGAGAAAAAAAAACA+TGG - chr4_1:80512674-80512693 None:intergenic 25.0%
GTACTTGTAAGTTGTAACAA+CGG - chr4_1:80508580-80508599 None:intergenic 30.0%
ATACGATAAGGCAAATGTAA+TGG + chr4_1:80508657-80508676 Msa0576420:exon 30.0%
! CTTTTTGCACTCTCAAATTA+TGG + chr4_1:80508745-80508764 Msa0576420:CDS 30.0%
!! TTGGGTTGAAATTGATTGAA+GGG - chr4_1:80508783-80508802 None:intergenic 30.0%
TGACACAACAACCAAAAATT+CGG + chr4_1:80508846-80508865 Msa0576420:CDS 30.0%
! AAACCTTCTTACCGAATTTT+TGG - chr4_1:80508860-80508879 None:intergenic 30.0%
TTCATCTCATACTGACAAAA+AGG + chr4_1:80508906-80508925 Msa0576420:CDS 30.0%
!!! GTTAACTGATTTTGATTCCA+AGG - chr4_1:80508935-80508954 None:intergenic 30.0%
! TTCTAAAAGAGGGGATTTAA+AGG + chr4_1:80509086-80509105 Msa0576420:CDS 30.0%
TCTAAAAGAGGGGATTTAAA+GGG + chr4_1:80509087-80509106 Msa0576420:CDS 30.0%
GGATATTGCTGAATCAAATA+AGG - chr4_1:80509121-80509140 None:intergenic 30.0%
! TGATAGTGACATGAATGATA+AGG + chr4_1:80509377-80509396 Msa0576420:CDS 30.0%
ACATGAATGATAAGGATAAG+AGG + chr4_1:80509385-80509404 Msa0576420:CDS 30.0%
AATGATAAGGATAAGAGGAA+TGG + chr4_1:80509390-80509409 Msa0576420:CDS 30.0%
ATGATAAGGATAAGAGGAAT+GGG + chr4_1:80509391-80509410 Msa0576420:CDS 30.0%
AAGAAATATGCACTACAAAG+AGG + chr4_1:80509435-80509454 Msa0576420:CDS 30.0%
TGAGAATATGTGTATGAGTA+AGG + chr4_1:80509470-80509489 Msa0576420:CDS 30.0%
!! AGATTTTAGGGATAAATCCT+AGG + chr4_1:80509586-80509605 Msa0576420:CDS 30.0%
TTACAGTAAGTAGATAAAGC+AGG - chr4_1:80509627-80509646 None:intergenic 30.0%
TTCTTAGTTTATGCAACACA+TGG - chr4_1:80509779-80509798 None:intergenic 30.0%
TAAGAGTGGGAAAAAGAAAA+TGG + chr4_1:80509868-80509887 Msa0576420:CDS 30.0%
AAGAGTGGGAAAAAGAAAAT+GGG + chr4_1:80509869-80509888 Msa0576420:CDS 30.0%
GGAAAAAGAAAATGGGATAA+AGG + chr4_1:80509876-80509895 Msa0576420:CDS 30.0%
ATGGGATAAAGGATTGATAA+TGG + chr4_1:80509887-80509906 Msa0576420:CDS 30.0%
ATGGAAGCAATGCAAAATAA+CGG + chr4_1:80509906-80509925 Msa0576420:CDS 30.0%
AGTTTCTTACTTGAAATGTC+TGG - chr4_1:80510124-80510143 None:intergenic 30.0%
GGTTATTTATGTTTAGTAGC+TGG + chr4_1:80510246-80510265 Msa0576420:intron 30.0%
! GTTATTTCGACAACAGAAAT+TGG - chr4_1:80510362-80510381 None:intergenic 30.0%
!! CAGAAATGGATTGAATACTA+TGG + chr4_1:80510444-80510463 Msa0576420:intron 30.0%
ATCAATGACTGCAATTAGAA+CGG - chr4_1:80510589-80510608 None:intergenic 30.0%
TCTAAAAGTTTCACATCAGA+TGG - chr4_1:80510618-80510637 None:intergenic 30.0%
TAAGTGGAAACTTCTTTGAA+GGG - chr4_1:80510675-80510694 None:intergenic 30.0%
ATAAGTGGAAACTTCTTTGA+AGG - chr4_1:80510676-80510695 None:intergenic 30.0%
CTATGATGCAAAACAATAAG+TGG - chr4_1:80510691-80510710 None:intergenic 30.0%
!! CACTTATTGTTTTGCATCAT+AGG + chr4_1:80510689-80510708 Msa0576420:CDS 30.0%
GATGATTGGTATGAACAAAA+TGG + chr4_1:80510811-80510830 Msa0576420:intron 30.0%
CATTTACAAACATGTGTTTC+AGG + chr4_1:80510900-80510919 Msa0576420:intron 30.0%
AGATCATTTGTTTCAACTTC+TGG + chr4_1:80510982-80511001 Msa0576420:CDS 30.0%
GATCATTTGTTTCAACTTCT+GGG + chr4_1:80510983-80511002 Msa0576420:CDS 30.0%
!! TCCAAATTTTAGGTACGATT+CGG + chr4_1:80511231-80511250 Msa0576420:intron 30.0%
TCATTAAGTTCTGCTTCAAT+TGG - chr4_1:80511500-80511519 None:intergenic 30.0%
! GTATCTAGTTCACATTTACA+AGG + chr4_1:80511600-80511619 Msa0576420:intron 30.0%
GATATGGAATCTTCATACTA+TGG + chr4_1:80511636-80511655 Msa0576420:intron 30.0%
GATATGGAATCTTCATACTA+TGG + chr4_1:80511636-80511655 Msa0576420:intron 30.0%
CTAATCAAAGGAAAAGAAAG+TGG - chr4_1:80512117-80512136 None:intergenic 30.0%
! TGATTTTTGTACGATTCTTG+AGG - chr4_1:80512250-80512269 None:intergenic 30.0%
! TGTTCTTTGTTTGTGAATGT+CGG + chr4_1:80512722-80512741 Msa0576420:three_prime_UTR 30.0%
TGTTTGTGTTGCAGAGATTA+AGG - chr4_1:80508556-80508575 None:intergenic 35.0%
TACATTTGCCTTATCGTATG+TGG - chr4_1:80508656-80508675 None:intergenic 35.0%
! TTTGAGAGTGCAAAAAGCTT+GGG - chr4_1:80508742-80508761 None:intergenic 35.0%
! ATTTGAGAGTGCAAAAAGCT+TGG - chr4_1:80508743-80508762 None:intergenic 35.0%
GTTGAAATTGATTGAAGGGA+AGG - chr4_1:80508779-80508798 None:intergenic 35.0%
!! CTTGGGTTGAAATTGATTGA+AGG - chr4_1:80508784-80508803 None:intergenic 35.0%
!! GGATTGAAGGTTGTTTTCTT+GGG - chr4_1:80508801-80508820 None:intergenic 35.0%
!! TGGATTGAAGGTTGTTTTCT+TGG - chr4_1:80508802-80508821 None:intergenic 35.0%
!! TTTTGGTTGTTGTGTCAAGT+GGG - chr4_1:80508843-80508862 None:intergenic 35.0%
!!! TTTTTGGTTGTTGTGTCAAG+TGG - chr4_1:80508844-80508863 None:intergenic 35.0%
CAACCAAAAATTCGGTAAGA+AGG + chr4_1:80508854-80508873 Msa0576420:CDS 35.0%
TCAGTATGAGATGAAGAAGA+AGG - chr4_1:80508901-80508920 None:intergenic 35.0%
TACTGACAAAAAGGTTTCCT+TGG + chr4_1:80508915-80508934 Msa0576420:CDS 35.0%
!!! TCTCGAAGGCATTTTTATTC+TGG - chr4_1:80509005-80509024 None:intergenic 35.0%
AATCTTCTTCTTCTTCTCGA+AGG - chr4_1:80509019-80509038 None:intergenic 35.0%
CGAGAAGAAGAAGAAGATTA+AGG + chr4_1:80509020-80509039 Msa0576420:CDS 35.0%
!! TTGGATCAGTGTTCTAAAAG+AGG + chr4_1:80509075-80509094 Msa0576420:CDS 35.0%
!! TGGATCAGTGTTCTAAAAGA+GGG + chr4_1:80509076-80509095 Msa0576420:CDS 35.0%
TTTGATTCAGCAATATCCCA+AGG + chr4_1:80509123-80509142 Msa0576420:CDS 35.0%
! ATATCCCAAGGTGTTAAACT+AGG + chr4_1:80509135-80509154 Msa0576420:CDS 35.0%
TACTAGAACTTTGAATGCAC+AGG + chr4_1:80509239-80509258 Msa0576420:CDS 35.0%
TAGGGATAAATCCTAGGTTA+AGG + chr4_1:80509592-80509611 Msa0576420:CDS 35.0%
AATCCTAGGTTAAGGTCTTA+TGG + chr4_1:80509600-80509619 Msa0576420:CDS 35.0%
! TGATGTTGAAAAGCACATGT+TGG + chr4_1:80509671-80509690 Msa0576420:CDS 35.0%
ATAAACTAAGAAGCAGTGTG+AGG + chr4_1:80509787-80509806 Msa0576420:CDS 35.0%
!! CTGCTGATTTGATTGTTGTT+TGG + chr4_1:80509826-80509845 Msa0576420:CDS 35.0%
!! AGCAAAATCGCTTTAAGAGT+GGG + chr4_1:80509855-80509874 Msa0576420:CDS 35.0%
GATGGAATGTGTAAATGTTG+TGG + chr4_1:80509999-80510018 Msa0576420:CDS 35.0%
TAAATGTTGTGGAGTGCAAT+TGG + chr4_1:80510010-80510029 Msa0576420:CDS 35.0%
GCAAAATTCTCAGTTTCAAC+AGG - chr4_1:80510053-80510072 None:intergenic 35.0%
!!! TTCGCGAGTCTTTTTTTAAG+TGG + chr4_1:80510203-80510222 Msa0576420:intron 35.0%
GTTAGCACAGTTCAAATAGA+TGG + chr4_1:80510225-80510244 Msa0576420:intron 35.0%
GTGATTAACGCTGTTGAAAT+AGG - chr4_1:80510315-80510334 None:intergenic 35.0%
!! ACTTCTTTGAAGGGAGTTTT+TGG - chr4_1:80510666-80510685 None:intergenic 35.0%
AAGGGATAAACCAATCAACA+AGG + chr4_1:80510729-80510748 Msa0576420:CDS 35.0%
TAAACCAATCAACAAGGCAT+TGG + chr4_1:80510735-80510754 Msa0576420:CDS 35.0%
CAATCATCATTTGATCCTGT+AGG - chr4_1:80510799-80510818 None:intergenic 35.0%
CTACAGGATCAAATGATGAT+TGG + chr4_1:80510797-80510816 Msa0576420:CDS 35.0%
ATGATCTCTCATCTCATCAT+TGG - chr4_1:80510969-80510988 None:intergenic 35.0%
ACCGAATCGTACCTAAAATT+TGG - chr4_1:80511235-80511254 None:intergenic 35.0%
TGAATAACAACAGAACAAGG+AGG - chr4_1:80511291-80511310 None:intergenic 35.0%
! TCCTTGTTCTGTTGTTATTC+AGG + chr4_1:80511290-80511309 Msa0576420:CDS 35.0%
ACCTGAATAACAACAGAACA+AGG - chr4_1:80511294-80511313 None:intergenic 35.0%
TTCAGGTAAGAAACATACAC+TGG + chr4_1:80511307-80511326 Msa0576420:intron 35.0%
ATGATGAAGCAGAAAGAAGA+TGG + chr4_1:80511516-80511535 Msa0576420:CDS 35.0%
GACTCTTCAACAACATACAA+AGG + chr4_1:80511578-80511597 Msa0576420:CDS 35.0%
!!! AGGTTACTTTTAGGACGATA+TGG + chr4_1:80511620-80511639 Msa0576420:intron 35.0%
! TATGAGTTGGCTGTATATCA+TGG - chr4_1:80511662-80511681 None:intergenic 35.0%
! TATGAGTTGGCTGTATATCA+TGG - chr4_1:80511662-80511681 None:intergenic 35.0%
!! TCACAATTGATGGATTAGCT+TGG + chr4_1:80512063-80512082 Msa0576420:intron 35.0%
GAGGTTTCTCATCTAATCAA+AGG - chr4_1:80512129-80512148 None:intergenic 35.0%
ATGAGAAACCTCTGCAAAAT+GGG + chr4_1:80512137-80512156 Msa0576420:CDS 35.0%
TACTAGAAAAGAGTCTGCAA+AGG + chr4_1:80512177-80512196 Msa0576420:CDS 35.0%
! CAGTTTAGTTTCATATCGCA+GGG + chr4_1:80512416-80512435 Msa0576420:three_prime_UTR 35.0%
!! TTTTAATTGCTGCTTGCACA+TGG + chr4_1:80512490-80512509 Msa0576420:three_prime_UTR 35.0%
!! ACTCAATGCGCTGATTAATA+TGG - chr4_1:80512606-80512625 None:intergenic 35.0%
TTTAGCAGCCACATACGATA+AGG + chr4_1:80508645-80508664 Msa0576420:five_prime_UTR 40.0%
CGTGAAGAACATTGGATTGA+AGG - chr4_1:80508814-80508833 None:intergenic 40.0%
TTTGGTTGTTGTGTCAAGTG+GGG - chr4_1:80508842-80508861 None:intergenic 40.0%
! AGAAGGAGAAGAGGTTTTCT+TGG - chr4_1:80508884-80508903 None:intergenic 40.0%
AGATGAAGAAGAAGGAGAAG+AGG - chr4_1:80508893-80508912 None:intergenic 40.0%
TAACAGCAGTAGCAGTTACA+CGG + chr4_1:80508951-80508970 Msa0576420:CDS 40.0%
!! AAACCCGCAATTTAGCTTGT+GGG - chr4_1:80509053-80509072 None:intergenic 40.0%
AGCTAAATTGCGGGTTTCTT+TGG + chr4_1:80509056-80509075 Msa0576420:CDS 40.0%
!! GGATCAGTGTTCTAAAAGAG+GGG + chr4_1:80509077-80509096 Msa0576420:CDS 40.0%
CTGTCCTAGTTTAACACCTT+GGG - chr4_1:80509142-80509161 None:intergenic 40.0%
CTTTGTTCTTCTGCAGCTAT+TGG + chr4_1:80509186-80509205 Msa0576420:CDS 40.0%
GGATAAGAGGAATGGGATAA+TGG + chr4_1:80509398-80509417 Msa0576420:CDS 40.0%
ATTGACATCTGTGGCTAGAA+TGG + chr4_1:80509512-80509531 Msa0576420:CDS 40.0%
! GAAAAGCACATGTTGGAACA+TGG + chr4_1:80509678-80509697 Msa0576420:CDS 40.0%
TTGAGAGTAAGCATAAGAGC+TGG + chr4_1:80509735-80509754 Msa0576420:CDS 40.0%
!! GAGCAAAATCGCTTTAAGAG+TGG + chr4_1:80509854-80509873 Msa0576420:CDS 40.0%
GAAGCAATGCAAAATAACGG+TGG + chr4_1:80509909-80509928 Msa0576420:CDS 40.0%
CAAGTTCTTCAAACCAGTGT+AGG + chr4_1:80509972-80509991 Msa0576420:CDS 40.0%
CAAACCAGTGTAGGAAATGA+TGG + chr4_1:80509981-80510000 Msa0576420:CDS 40.0%
CATTCCATCATTTCCTACAC+TGG - chr4_1:80509988-80510007 None:intergenic 40.0%
GCATCTATCACTGCTTCAAA+AGG - chr4_1:80510471-80510490 None:intergenic 40.0%
GTGATAGATGCTGCAAATGT+AGG + chr4_1:80510480-80510499 Msa0576420:intron 40.0%
! ATTCAGTAACTTGCCTTGGA+TGG - chr4_1:80510531-80510550 None:intergenic 40.0%
TGCAATTAGAACGGAATGCA+AGG - chr4_1:80510580-80510599 None:intergenic 40.0%
TTGCATCATAGGCGTATCAA+AGG + chr4_1:80510700-80510719 Msa0576420:CDS 40.0%
GCGTATCAAAGGAGACAAAA+GGG + chr4_1:80510711-80510730 Msa0576420:CDS 40.0%
! TCAACCAATGCCTTGTTGAT+TGG - chr4_1:80510742-80510761 None:intergenic 40.0%
!! TCAACAAGGCATTGGTTGAT+AGG + chr4_1:80510743-80510762 Msa0576420:CDS 40.0%
ATACTCTATGCAACACCTAC+AGG + chr4_1:80510781-80510800 Msa0576420:CDS 40.0%
! CAAACATGTGTTTCAGGTAC+TGG + chr4_1:80510906-80510925 Msa0576420:intron 40.0%
TGATGCCTTTCTTTCCACTT+GGG - chr4_1:80511022-80511041 None:intergenic 40.0%
ATAACAACAGAACAAGGAGG+CGG - chr4_1:80511288-80511307 None:intergenic 40.0%
AACATGACAATTGTGGTTGC+AGG + chr4_1:80511448-80511467 Msa0576420:intron 40.0%
CTTCAATTGGAATATGCCAG+TGG - chr4_1:80511487-80511506 None:intergenic 40.0%
GTGTATCACACGTGCTAAAT+TGG + chr4_1:80511541-80511560 Msa0576420:CDS 40.0%
GCTAAATTGGACATGGTTAG+TGG + chr4_1:80511554-80511573 Msa0576420:CDS 40.0%
AAAAGAAAGTGGGAAGTGAG+GGG - chr4_1:80512106-80512125 None:intergenic 40.0%
GAAAAGAAAGTGGGAAGTGA+GGG - chr4_1:80512107-80512126 None:intergenic 40.0%
GATGAGAAACCTCTGCAAAA+TGG + chr4_1:80512136-80512155 Msa0576420:intron 40.0%
TGAGAAACCTCTGCAAAATG+GGG + chr4_1:80512138-80512157 Msa0576420:CDS 40.0%
CTCGTTATTATCCGAACTTG+AGG + chr4_1:80512280-80512299 Msa0576420:three_prime_UTR 40.0%
CCTGCGATATGAAACTAAAC+TGG - chr4_1:80512418-80512437 None:intergenic 40.0%
! CCAGTTTAGTTTCATATCGC+AGG + chr4_1:80512415-80512434 Msa0576420:three_prime_UTR 40.0%
TATCGCAGGGAGAAATACAA+AGG + chr4_1:80512429-80512448 Msa0576420:three_prime_UTR 40.0%
AGGGAGAAATACAAAGGCTA+AGG + chr4_1:80512435-80512454 Msa0576420:three_prime_UTR 40.0%
TTGTTGCAGTTGCAGAGTGA+GGG - chr4_1:80508692-80508711 None:intergenic 45.0%
ATTGTTGCAGTTGCAGAGTG+AGG - chr4_1:80508693-80508712 None:intergenic 45.0%
TTGGTTGTTGTGTCAAGTGG+GGG - chr4_1:80508841-80508860 None:intergenic 45.0%
!! AACCCGCAATTTAGCTTGTG+GGG - chr4_1:80509052-80509071 None:intergenic 45.0%
!! GAAACCCGCAATTTAGCTTG+TGG - chr4_1:80509054-80509073 None:intergenic 45.0%
GCTGTCCTAGTTTAACACCT+TGG - chr4_1:80509143-80509162 None:intergenic 45.0%
TGTTCTTCTGCAGCTATTGG+CGG + chr4_1:80509189-80509208 Msa0576420:CDS 45.0%
!! TGAAGCAGCATTGACATCTG+TGG + chr4_1:80509503-80509522 Msa0576420:CDS 45.0%
!! TGGTGACAAGGCTTTTGAGA+TGG + chr4_1:80509551-80509570 Msa0576420:CDS 45.0%
GGACCATAAGACCTTAACCT+AGG - chr4_1:80509606-80509625 None:intergenic 45.0%
CTTCCAACTCAGGTTCTTCA+GGG - chr4_1:80509710-80509729 None:intergenic 45.0%
GCAATGCAAAATAACGGTGG+AGG + chr4_1:80509912-80509931 Msa0576420:CDS 45.0%
TGCAAAATAACGGTGGAGGA+TGG + chr4_1:80509916-80509935 Msa0576420:CDS 45.0%
GTTGGTTGGGTAAAGGGAAA+TGG + chr4_1:80509949-80509968 Msa0576420:CDS 45.0%
AATGTAGGCCTTTACAGCCA+AGG + chr4_1:80510495-80510514 Msa0576420:intron 45.0%
ATGTAGGCCTTTACAGCCAA+GGG + chr4_1:80510496-80510515 Msa0576420:intron 45.0%
TGAACTTCCCTTGGCTGTAA+AGG - chr4_1:80510506-80510525 None:intergenic 45.0%
! CCACATTCAGTAACTTGCCT+TGG - chr4_1:80510535-80510554 None:intergenic 45.0%
CCAAGGCAAGTTACTGAATG+TGG + chr4_1:80510532-80510551 Msa0576420:intron 45.0%
GGCGTATCAAAGGAGACAAA+AGG + chr4_1:80510710-80510729 Msa0576420:CDS 45.0%
!! ACAAGGCATTGGTTGATAGG+TGG + chr4_1:80510746-80510765 Msa0576420:CDS 45.0%
GAAATGACTTCTTCCCCAAG+TGG + chr4_1:80511005-80511024 Msa0576420:CDS 45.0%
TCTTCCCCAAGTGGAAAGAA+AGG + chr4_1:80511014-80511033 Msa0576420:CDS 45.0%
GATGCCTTTCTTTCCACTTG+GGG - chr4_1:80511021-80511040 None:intergenic 45.0%
CTGATGCCTTTCTTTCCACT+TGG - chr4_1:80511023-80511042 None:intergenic 45.0%
!! CAAGTGGAAAGAAAGGCATC+AGG + chr4_1:80511021-80511040 Msa0576420:CDS 45.0%
!! GGAAAGAAAGGCATCAGGTA+TGG + chr4_1:80511026-80511045 Msa0576420:intron 45.0%
TGGTTGCAGGAATCAGAAGA+AGG + chr4_1:80511461-80511480 Msa0576420:intron 45.0%
CACACGTGCTAAATTGGACA+TGG + chr4_1:80511547-80511566 Msa0576420:CDS 45.0%
AAAGAAAGTGGGAAGTGAGG+GGG - chr4_1:80512105-80512124 None:intergenic 45.0%
GGAAAAGAAAGTGGGAAGTG+AGG - chr4_1:80512108-80512127 None:intergenic 45.0%
TGTTGCAGTTGCAGAGTGAG+GGG - chr4_1:80508691-80508710 None:intergenic 50.0%
TGGTTGTTGTGTCAAGTGGG+GGG - chr4_1:80508840-80508859 None:intergenic 50.0%
!! ACCCGCAATTTAGCTTGTGG+GGG - chr4_1:80509051-80509070 None:intergenic 50.0%
!! GTACCACTTCCACTTTTCGC+AGG - chr4_1:80509222-80509241 None:intergenic 50.0%
! GAATGGGATAATGGTGAGCG+AGG + chr4_1:80509407-80509426 Msa0576420:CDS 50.0%
ATCTGTGGCTAGAATGGCCA+TGG + chr4_1:80509518-80509537 Msa0576420:CDS 50.0%
ATGGCCATGGCAATGAGTGA+TGG + chr4_1:80509531-80509550 Msa0576420:CDS 50.0%
GTCACCATCACTCATTGCCA+TGG - chr4_1:80509538-80509557 None:intergenic 50.0%
! GGCAATGAGTGATGGTGACA+AGG + chr4_1:80509539-80509558 Msa0576420:CDS 50.0%
GTACCCTGAAGAACCTGAGT+TGG + chr4_1:80509704-80509723 Msa0576420:CDS 50.0%
GCTTCCAACTCAGGTTCTTC+AGG - chr4_1:80509711-80509730 None:intergenic 50.0%
!! CTCAAGAGTGCTTCCAACTC+AGG - chr4_1:80509720-80509739 None:intergenic 50.0%
AATAACGGTGGAGGATGGCA+TGG + chr4_1:80509921-80509940 Msa0576420:CDS 50.0%
ATAACGGTGGAGGATGGCAT+GGG + chr4_1:80509922-80509941 Msa0576420:CDS 50.0%
!! GGACAGGTTGGTTGGGTAAA+GGG + chr4_1:80509943-80509962 Msa0576420:CDS 50.0%
TGGATGGCATGAACTTCCCT+TGG - chr4_1:80510515-80510534 None:intergenic 50.0%
AGGGAAGTTCATGCCATCCA+AGG + chr4_1:80510515-80510534 Msa0576420:intron 50.0%
!! CGATTCGGTTTCTCTGATGC+TGG + chr4_1:80511246-80511265 Msa0576420:CDS 50.0%
AGGAATCAGAAGAAGGCCAC+TGG + chr4_1:80511468-80511487 Msa0576420:intron 50.0%
ACCTCTGCAAAATGGGGAAC+AGG + chr4_1:80512144-80512163 Msa0576420:CDS 50.0%
CAACTCTGCAGCCTCAAGTT+CGG - chr4_1:80512294-80512313 None:intergenic 50.0%
! GAGGCTGCAGAGTTGATTAG+TGG + chr4_1:80512299-80512318 Msa0576420:three_prime_UTR 50.0%
GGGGGTTGCGTGAAGAACAT+TGG - chr4_1:80508822-80508841 None:intergenic 55.0%
!! CCGCAATTTAGCTTGTGGGG+GGG - chr4_1:80509049-80509068 None:intergenic 55.0%
CCCCCCCACAAGCTAAATTG+CGG + chr4_1:80509046-80509065 Msa0576420:CDS 55.0%
!! CCCGCAATTTAGCTTGTGGG+GGG - chr4_1:80509050-80509069 None:intergenic 55.0%
CCCCCCACAAGCTAAATTGC+GGG + chr4_1:80509047-80509066 Msa0576420:CDS 55.0%
GGTCTTCGACCTGCGAAAAG+TGG + chr4_1:80509210-80509229 Msa0576420:CDS 55.0%
CGACCTGCGAAAAGTGGAAG+TGG + chr4_1:80509216-80509235 Msa0576420:CDS 55.0%
!! ATGGCATGGGACAGGTTGGT+TGG + chr4_1:80509935-80509954 Msa0576420:CDS 55.0%
!! TGGCATGGGACAGGTTGGTT+GGG + chr4_1:80509936-80509955 Msa0576420:CDS 55.0%
!! GGGACAGGTTGGTTGGGTAA+AGG + chr4_1:80509942-80509961 Msa0576420:CDS 55.0%
! GCCTGTTCCCCATTTTGCAG+AGG - chr4_1:80512148-80512167 None:intergenic 55.0%
GAGGATGGCATGGGACAGGT+TGG + chr4_1:80509931-80509950 Msa0576420:CDS 60.0%
GGTGGAGGATGGCATGGGAC+AGG + chr4_1:80509927-80509946 Msa0576420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80508535 80512748 80508535 ID=Msa0576420;Name=Msa0576420
chr4_1 mRNA 80508535 80512748 80508535 ID=Msa0576420-mRNA-1;Parent=Msa0576420;Name=Msa0576420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.83|0.85|1|1|1|7|469|717
chr4_1 exon 80508535 80510133 80508535 ID=Msa0576420-mRNA-1:exon:28797;Parent=Msa0576420-mRNA-1
chr4_1 exon 80510447 80510497 80510447 ID=Msa0576420-mRNA-1:exon:28798;Parent=Msa0576420-mRNA-1
chr4_1 exon 80510637 80510818 80510637 ID=Msa0576420-mRNA-1:exon:28799;Parent=Msa0576420-mRNA-1
chr4_1 exon 80510922 80511042 80510922 ID=Msa0576420-mRNA-1:exon:28800;Parent=Msa0576420-mRNA-1
chr4_1 exon 80511243 80511311 80511243 ID=Msa0576420-mRNA-1:exon:28801;Parent=Msa0576420-mRNA-1
chr4_1 exon 80511470 80511599 80511470 ID=Msa0576420-mRNA-1:exon:28802;Parent=Msa0576420-mRNA-1
chr4_1 exon 80512137 80512748 80512137 ID=Msa0576420-mRNA-1:exon:28803;Parent=Msa0576420-mRNA-1
chr4_1 five_prime_UTR 80508535 80508675 80508535 ID=Msa0576420-mRNA-1:five_prime_utr;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80508676 80510133 80508676 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80510447 80510497 80510447 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80510637 80510818 80510637 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80510922 80511042 80510922 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80511243 80511311 80511243 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80511470 80511599 80511470 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 CDS 80512137 80512279 80512137 ID=Msa0576420-mRNA-1:cds;Parent=Msa0576420-mRNA-1
chr4_1 three_prime_UTR 80512280 80512748 80512280 ID=Msa0576420-mRNA-1:three_prime_utr;Parent=Msa0576420-mRNA-1
Gene Sequence

>Msa0576420

ATGGCTACTTCTCCCCTCACTCTGCAACTGCAACAATCTCTTTCTTTCTCTCATTCTCTCATACCCAAGCTTTTTGCACTCTCAAATTATGGTTATGAATCCTTCCCTTCAATCAATTTCAACCCAAGAAAACAACCTTCAATCCAATGTTCTTCACGCAACCCCCCACTTGACACAACAACCAAAAATTCGGTAAGAAGGTTTTCCAAGAAAACCTCTTCTCCTTCTTCTTCATCTCATACTGACAAAAAGGTTTCCTTGGAATCAAAATCAGTTAACAGCAGTAGCAGTTACACGGTTGTTGAGAAAAAGAAGAAAAATGAAAACCAGAATAAAAATGCCTTCGAGAAGAAGAAGAAGATTAAGGACACCCCCCCACAAGCTAAATTGCGGGTTTCTTTGGATCAGTGTTCTAAAAGAGGGGATTTAAAGGGAGCTTTATCCTTATTTGATTCAGCAATATCCCAAGGTGTTAAACTAGGACAGCACCATTATACTGTTCTTTTGTATCTTTGTTCTTCTGCAGCTATTGGCGGTCTTCGACCTGCGAAAAGTGGAAGTGGTACTAGAACTTTGAATGCACAGGTCTCATCTAATAATTTAAATGGATCAGTAGATAGAAATGATGACGATGAAAGATTTTGTAGCGATAGTGATGATAATAAATTGTTAGATAGTTCAGTTTCAGTTTCACATAGTGATGATAGTGACATGAATGATAAGGATAAGAGGAATGGGATAATGGTGAGCGAGGATGTTAAGAAATATGCACTACAAAGAGGATTTGAAGTGTATGAGAATATGTGTATGAGTAAGGTTGAAATGAATGAAGCAGCATTGACATCTGTGGCTAGAATGGCCATGGCAATGAGTGATGGTGACAAGGCTTTTGAGATGGTTAAACAAATGAAGATTTTAGGGATAAATCCTAGGTTAAGGTCTTATGGTCCTGCTTTATCTACTTACTGTAATAATGGAGAAATAGATAAAGCATTTGATGTTGAAAAGCACATGTTGGAACATGGTGTGTACCCTGAAGAACCTGAGTTGGAAGCACTCTTGAGAGTAAGCATAAGAGCTGGTAAGAGTGATAGAGTCTACCATGTGTTGCATAAACTAAGAAGCAGTGTGAGGAAAGTTTCAACTACTACTGCTGATTTGATTGTTGTTTGGTTTAAGAGCAAAATCGCTTTAAGAGTGGGAAAAAGAAAATGGGATAAAGGATTGATAATGGAAGCAATGCAAAATAACGGTGGAGGATGGCATGGGACAGGTTGGTTGGGTAAAGGGAAATGGCAAGTTCTTCAAACCAGTGTAGGAAATGATGGAATGTGTAAATGTTGTGGAGTGCAATTGGCTACTATTGATCTTGATCCTGTTGAAACTGAGAATTTTGCGAAGTCAGTTGCATCCATTGCTATAAGTAATGAGAAAAATTCAAACTTCCAGACATTTCAAAAATGGATTGAATACTATGGACCTTTTGAAGCAGTGATAGATGCTGCAAATATCAATGCTGTTGTCAATGAATTGCGCCAAAAACTCCCTTCAAAGAAGTTTCCACTTATTGTTTTGCATCATAGGCGTATCAAAGGAGACAAAAGGGATAAACCAATCAACAAGGCATTGGTTGATAGGTGGAATAATGCTAATATACTCTATGCAACACCTACAGGATCAAATGATGATTGGTACTGGTTGTATGCAGCTATAAAATTCAAATGCTTACTTGTTTCCAATGATGAGATGAGAGATCATTTGTTTCAACTTCTGGGAAATGACTTCTTCCCCAAGTGGAAAGAAAGGCATCAGGTACGATTCGGTTTCTCTGATGCTGGTCTTGAGTTTTACATGCCGCCTCCTTGTTCTGTTGTTATTCAGGAATCAGAAGAAGGCCACTGGCATATTCCAATTGAAGCAGAACTTAATGATGAAGCAGAAAGAAGATGGCTGTGTATCACACGTGCTAAATTGGACATGGTTAGTGGAGACTCTTCAACAACATACAAAGATGAGAAACCTCTGCAAAATGGGGAACAGGCAAAATCAGTTACTAGAAAAGAGTCTGCAAAGGAGTTGCAATATCAGAATCTTGTCAATCACAAAAAAATGAACGGAACTCCTCAAGAATCGTACAAAAATCACAGAAAATAA

Protein sequence

>Msa0576420

MATSPLTLQLQQSLSFSHSLIPKLFALSNYGYESFPSINFNPRKQPSIQCSSRNPPLDTTTKNSVRRFSKKTSSPSSSSHTDKKVSLESKSVNSSSSYTVVEKKKKNENQNKNAFEKKKKIKDTPPQAKLRVSLDQCSKRGDLKGALSLFDSAISQGVKLGQHHYTVLLYLCSSAAIGGLRPAKSGSGTRTLNAQVSSNNLNGSVDRNDDDERFCSDSDDNKLLDSSVSVSHSDDSDMNDKDKRNGIMVSEDVKKYALQRGFEVYENMCMSKVEMNEAALTSVARMAMAMSDGDKAFEMVKQMKILGINPRLRSYGPALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRAGKSDRVYHVLHKLRSSVRKVSTTTADLIVVWFKSKIALRVGKRKWDKGLIMEAMQNNGGGWHGTGWLGKGKWQVLQTSVGNDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWIEYYGPFEAVIDAANINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDKPINKALVDRWNNANILYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERHQVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKLDMVSGDSSTTYKDEKPLQNGEQAKSVTRKESAKELQYQNLVNHKKMNGTPQESYKNHRK*