AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575250 MtrunA17_Chr8g0392321 95.306 490 5 5 1 489 1 473 0.0 943
Msa0575250 MtrunA17_Chr2g0329091 35.714 406 228 7 93 471 188 587 6.16e-79 257
Msa0575250 MtrunA17_Chr4g0033061 34.988 423 234 9 80 471 172 584 6.17e-76 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575250 AT1G12330.1 54.678 481 162 12 19 470 19 472 3.59e-172 494
Msa0575250 AT5G12900.1 40.764 314 181 3 161 471 247 558 1.00e-80 261

Find 93 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAACATGGTTAGGATTA+TGG 0.210083 4_1:-79082855 Msa0575250:CDS
ATATACACATTGATTAAAAT+TGG 0.227786 4_1:+79082610 None:intergenic
CAACGTTGTACAACATTTCT+TGG 0.272548 4_1:-79083464 Msa0575250:CDS
AATCAATGTGTATATTATAT+TGG 0.278120 4_1:-79082602 Msa0575250:three_prime_UTR
TTGGGTCAACGTGAACAATT+TGG 0.278229 4_1:-79082474 Msa0575250:three_prime_UTR
TTTGTTGTTGCTGAGGTTAT+TGG 0.282756 4_1:+79082769 None:intergenic
TTCTGTTTACATGGAAGATA+TGG 0.285090 4_1:-79082903 Msa0575250:CDS
TTGGTTTGGAATTTAGAATT+TGG 0.291184 4_1:-79082660 Msa0575250:three_prime_UTR
TATTGTCACACTTTGAAATC+TGG 0.312009 4_1:-79083580 Msa0575250:CDS
TTGAATGATATGATAATGAT+AGG 0.315417 4_1:+79084343 None:intergenic
AGGGATTAAAGGAGGAGATT+TGG 0.319288 4_1:+79084265 None:intergenic
TTCAAAAGAATGCTTGTAAT+AGG 0.330527 4_1:-79083225 Msa0575250:CDS
TGCTATGTTGGGTTGGAATA+GGG 0.335899 4_1:-79083053 Msa0575250:CDS
TTGCTATGTTGGGTTGGAAT+AGG 0.340560 4_1:-79083054 Msa0575250:CDS
GGATATGATATGTCGATATA+TGG 0.351949 4_1:-79082503 Msa0575250:three_prime_UTR
GCTTCATTCAACATGATTCA+TGG 0.354899 4_1:-79083166 Msa0575250:CDS
TTAAATGTAAGGTTCTTTGC+AGG 0.355993 4_1:-79082799 Msa0575250:CDS
GCTGTTACTGCTGTTGTTGT+TGG 0.357262 4_1:+79083849 None:intergenic
CAATGAAGAACAATGGAAAA+TGG 0.357639 4_1:-79083728 Msa0575250:CDS
GAATGGCGTGAAGGGATTAA+AGG 0.362757 4_1:+79084254 None:intergenic
ATGGATTTGAAAATCCCATT+TGG 0.381416 4_1:+79083802 None:intergenic
GGTTCTATTGTTGTTTATGT+TGG 0.389790 4_1:-79082633 Msa0575250:three_prime_UTR
TTGTTGCTTCAAAGAGTGTT+TGG 0.389896 4_1:-79083000 Msa0575250:CDS
ATTAATACTACTAATGTTGT+TGG 0.391283 4_1:-79083538 Msa0575250:CDS
TTGGTGTTGTTCTTCTACTT+TGG 0.395204 4_1:+79084061 None:intergenic
AATATTATCCGTGACATGTC+AGG 0.397237 4_1:+79084370 None:intergenic
TGTTGGGTTGGAATAGGGCT+TGG 0.406333 4_1:-79083048 Msa0575250:CDS
TCACACTTTGAAATCTGGTC+TGG 0.408533 4_1:-79083575 Msa0575250:CDS
GTATATTATATTGGTGTTGA+TGG 0.412976 4_1:-79082593 Msa0575250:three_prime_UTR
CAACTTTGATTCTGTTTACA+TGG 0.414082 4_1:-79082912 Msa0575250:CDS
AAGCTCTTCAAGAAGCTTCA+AGG 0.420955 4_1:-79083654 Msa0575250:CDS
GGTTGGTACCAAACATGGTT+AGG 0.425331 4_1:-79082862 Msa0575250:CDS
ACCATAATCCTAACCATGTT+TGG 0.426702 4_1:+79082854 None:intergenic
ACTTGATGGGTTTAAGGTGA+TGG 0.428119 4_1:+79082728 None:intergenic
ACATGATTCATGGGTTGACT+TGG 0.437332 4_1:-79083156 Msa0575250:CDS
CTTTGTTGCAAAGTCCAAAT+GGG 0.440057 4_1:-79083816 Msa0575250:CDS
TGTTTGGATGGTTCATTTGT+TGG 0.441093 4_1:-79082984 Msa0575250:CDS
ACAAAGAAAGCTTGCAAAAG+TGG 0.443973 4_1:+79083019 None:intergenic
ATTGGAAAGTGTACTCTGTT+TGG 0.445141 4_1:-79082679 Msa0575250:three_prime_UTR
TAATAGGATATTGAACCCTA+TGG 0.449841 4_1:-79083209 Msa0575250:CDS
GTTAGGATTATGGTTGCTCC+TGG 0.452810 4_1:-79082845 Msa0575250:CDS
CTTCATTCAACATGATTCAT+GGG 0.453738 4_1:-79083165 Msa0575250:CDS
TGGAATTTAGAATTTGGATC+AGG 0.454327 4_1:-79082654 Msa0575250:three_prime_UTR
TTTGGAGTTGAAGCACTTGT+TGG 0.456480 4_1:+79084042 None:intergenic
CTTGATGGGTTTAAGGTGAT+GGG 0.456935 4_1:+79082729 None:intergenic
TTGATATTGATTGGTGTTGG+TGG 0.458109 4_1:+79083997 None:intergenic
TCTTTGTTGCAAAGTCCAAA+TGG 0.458726 4_1:-79083817 Msa0575250:CDS
TATATTATATTGGTGTTGAT+GGG 0.465982 4_1:-79082592 Msa0575250:three_prime_UTR
AAAGTGTACTCTGTTTGGTT+TGG 0.465999 4_1:-79082674 Msa0575250:three_prime_UTR
AGTGAAATTGTTGCTATGTT+GGG 0.472103 4_1:-79083064 Msa0575250:CDS
TTGTTGATATTGATTGGTGT+TGG 0.475429 4_1:+79083994 None:intergenic
GAGTGAAATTGTTGCTATGT+TGG 0.475944 4_1:-79083065 Msa0575250:CDS
TGATGATTGATACTATGCTT+TGG 0.479172 4_1:+79084024 None:intergenic
TTATATTGGTGTTGATGGGT+TGG 0.485131 4_1:-79082588 Msa0575250:three_prime_UTR
CTTGATTCACACCTTTCCAT+AGG 0.488970 4_1:+79083193 None:intergenic
TGGTAGTGCTGTTAAATGTA+AGG 0.493435 4_1:-79082810 Msa0575250:CDS
TTTGTTGTTGATGCTGACAT+TGG 0.496621 4_1:+79083754 None:intergenic
TCTTGTTAGCTTTGAAACAA+TGG 0.500929 4_1:+79083783 None:intergenic
TATCCGTGACATGTCAGGGC+AGG 0.511446 4_1:+79084375 None:intergenic
CGTTGTACAACATTTCTTGG+TGG 0.514695 4_1:-79083461 Msa0575250:CDS
TTGATTCACACCTTTCCATA+GGG 0.520693 4_1:+79083194 None:intergenic
TTCAAGGTTGGTACCAAACA+TGG 0.524833 4_1:-79082867 Msa0575250:CDS
TGTCTTGTTTGTTGTTGCTG+AGG 0.529272 4_1:+79082762 None:intergenic
TGGGTGGGGACAAGTCTTCA+AGG 0.532792 4_1:-79082883 Msa0575250:CDS
GGAGATTTGGAAGAAGAAGA+AGG 0.534128 4_1:+79084278 None:intergenic
AAATTGTTGCTATGTTGGGT+TGG 0.545805 4_1:-79083060 Msa0575250:CDS
TGCTTCAAAGAGTGTTTGGA+TGG 0.549445 4_1:-79082996 Msa0575250:CDS
ATTAAATATGCAGATTCAAG+AGG 0.551509 4_1:-79084124 Msa0575250:intron
TCTGAAACTGAACTAGAAGA+TGG 0.555922 4_1:-79083940 Msa0575250:CDS
TCTGTTTACATGGAAGATAT+GGG 0.561170 4_1:-79082902 Msa0575250:CDS
TGGCGTGAAGGGATTAAAGG+AGG 0.561993 4_1:+79084257 None:intergenic
GTTGTTGTTGGAATGATCAA+AGG 0.567800 4_1:+79083861 None:intergenic
TACTAAACTGGTGTGAATTG+TGG 0.581713 4_1:+79084230 None:intergenic
ACAGTACAGTACCGAGGAGG+TGG 0.584764 4_1:+79084400 None:intergenic
TGCCCTGCCCTGACATGTCA+CGG 0.588131 4_1:-79084378 Msa0575250:five_prime_UTR
ATCCGTGACATGTCAGGGCA+GGG 0.592324 4_1:+79084376 None:intergenic
CATGATTCATGGGTTGACTT+GGG 0.593679 4_1:-79083155 Msa0575250:CDS
ATTGTGGAGAATGGCGTGAA+GGG 0.597358 4_1:+79084246 None:intergenic
GGATATTGAACCCTATGGAA+AGG 0.598272 4_1:-79083204 Msa0575250:CDS
TTTACATGGAAGATATGGGT+GGG 0.600565 4_1:-79082898 Msa0575250:CDS
ATATTATCCGTGACATGTCA+GGG 0.601359 4_1:+79084371 None:intergenic
CTGGTGTGAATTGTGGAGAA+TGG 0.603934 4_1:+79084237 None:intergenic
TTGTTGTTGGAATGATCAAA+GGG 0.606933 4_1:+79083862 None:intergenic
CAAACAACAATGAAGAACAA+TGG 0.609170 4_1:-79083735 Msa0575250:CDS
AATTGTGGAGAATGGCGTGA+AGG 0.614898 4_1:+79084245 None:intergenic
TGGGGACAAGTCTTCAAGGT+TGG 0.629308 4_1:-79082879 Msa0575250:CDS
GTTTACATGGAAGATATGGG+TGG 0.629654 4_1:-79082899 Msa0575250:CDS
ACAATGCAACTTAGACACAC+AGG 0.633999 4_1:-79083391 Msa0575250:CDS
TTACATGGAAGATATGGGTG+GGG 0.637589 4_1:-79082897 Msa0575250:CDS
TGTTGGAATGATCAAAGGGA+AGG 0.654140 4_1:+79083866 None:intergenic
CAGGGCACAGTACAGTACCG+AGG 0.662777 4_1:+79084394 None:intergenic
AGCAACAACAAACAAGACAA+AGG 0.670945 4_1:-79082758 Msa0575250:CDS
GGCACAGTACAGTACCGAGG+AGG 0.741209 4_1:+79084397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAGATTTTTATATCATA+AGG + chr4_1:79083544-79083563 None:intergenic 15.0%
!! TCAAAAATAAAAAACTTGAT+GGG + chr4_1:79084160-79084179 None:intergenic 15.0%
!! ATCAAAAATAAAAAACTTGA+TGG + chr4_1:79084161-79084180 None:intergenic 15.0%
!!! TTTGATTTTTAATGTGAAAT+TGG - chr4_1:79084175-79084194 Msa0575250:intron 15.0%
!!! ATATACACATTGATTAAAAT+TGG + chr4_1:79084265-79084284 None:intergenic 15.0%
!! AATCAATGTGTATATTATAT+TGG - chr4_1:79084270-79084289 Msa0575250:CDS 15.0%
!!! AAAGAGATTTTTATATCATA+AGG + chr4_1:79083544-79083563 None:intergenic 15.0%
!! TCAAAAATAAAAAACTTGAT+GGG + chr4_1:79084160-79084179 None:intergenic 15.0%
!! ATCAAAAATAAAAAACTTGA+TGG + chr4_1:79084161-79084180 None:intergenic 15.0%
!!! TTTGATTTTTAATGTGAAAT+TGG - chr4_1:79084175-79084194 Msa0575250:intron 15.0%
!!! ATATACACATTGATTAAAAT+TGG + chr4_1:79084265-79084284 None:intergenic 15.0%
!! AATCAATGTGTATATTATAT+TGG - chr4_1:79084270-79084289 Msa0575250:CDS 15.0%
!!! TTGAATGATATGATAATGAT+AGG + chr4_1:79082532-79082551 None:intergenic 20.0%
!! ATTAATACTACTAATGTTGT+TGG - chr4_1:79083334-79083353 Msa0575250:CDS 20.0%
!!! TATATTATATTGGTGTTGAT+GGG - chr4_1:79084280-79084299 Msa0575250:CDS 20.0%
!!! TTGAATGATATGATAATGAT+AGG + chr4_1:79082532-79082551 None:intergenic 20.0%
!! ATTAATACTACTAATGTTGT+TGG - chr4_1:79083334-79083353 Msa0575250:CDS 20.0%
!!! TATATTATATTGGTGTTGAT+GGG - chr4_1:79084280-79084299 Msa0575250:CDS 20.0%
!!! AGTCATTTTTGAGAGATAAT+TGG + chr4_1:79082568-79082587 None:intergenic 25.0%
! GTATGAAAATGTTACTAAAC+TGG + chr4_1:79082657-79082676 None:intergenic 25.0%
! ATTAAATATGCAGATTCAAG+AGG - chr4_1:79082748-79082767 Msa0575250:CDS 25.0%
!!! GTGTTTTTGTTGATATTGAT+TGG + chr4_1:79082887-79082906 None:intergenic 25.0%
! AAGTAAAAAAGCAAACTTCT+TGG + chr4_1:79083577-79083596 None:intergenic 25.0%
!!! AAGAAGTTTGCTTTTTTACT+TGG - chr4_1:79083576-79083595 Msa0575250:CDS 25.0%
!!! TTTGAACAAGACATTTTTTG+AGG - chr4_1:79083606-79083625 Msa0575250:CDS 25.0%
! TTCAAAAGAATGCTTGTAAT+AGG - chr4_1:79083647-79083666 Msa0575250:CDS 25.0%
!! CCTTTATCAACTCTAAAAAT+TGG + chr4_1:79083937-79083956 None:intergenic 25.0%
!!! CCAATTTTTAGAGTTGATAA+AGG - chr4_1:79083934-79083953 Msa0575250:CDS 25.0%
!!! TAAAAAACTTGATGGGTTTA+AGG + chr4_1:79084153-79084172 None:intergenic 25.0%
!!! TTGGTTTGGAATTTAGAATT+TGG - chr4_1:79084212-79084231 Msa0575250:intron 25.0%
!!! GTATATTATATTGGTGTTGA+TGG - chr4_1:79084279-79084298 Msa0575250:CDS 25.0%
!!! AGTCATTTTTGAGAGATAAT+TGG + chr4_1:79082568-79082587 None:intergenic 25.0%
! GTATGAAAATGTTACTAAAC+TGG + chr4_1:79082657-79082676 None:intergenic 25.0%
! ATTAAATATGCAGATTCAAG+AGG - chr4_1:79082748-79082767 Msa0575250:CDS 25.0%
!!! GTGTTTTTGTTGATATTGAT+TGG + chr4_1:79082887-79082906 None:intergenic 25.0%
! AAGTAAAAAAGCAAACTTCT+TGG + chr4_1:79083577-79083596 None:intergenic 25.0%
!!! AAGAAGTTTGCTTTTTTACT+TGG - chr4_1:79083576-79083595 Msa0575250:CDS 25.0%
!!! TTTGAACAAGACATTTTTTG+AGG - chr4_1:79083606-79083625 Msa0575250:CDS 25.0%
! TTCAAAAGAATGCTTGTAAT+AGG - chr4_1:79083647-79083666 Msa0575250:CDS 25.0%
!! CCTTTATCAACTCTAAAAAT+TGG + chr4_1:79083937-79083956 None:intergenic 25.0%
!!! CCAATTTTTAGAGTTGATAA+AGG - chr4_1:79083934-79083953 Msa0575250:CDS 25.0%
!!! TAAAAAACTTGATGGGTTTA+AGG + chr4_1:79084153-79084172 None:intergenic 25.0%
!!! TTGGTTTGGAATTTAGAATT+TGG - chr4_1:79084212-79084231 Msa0575250:intron 25.0%
!!! GTATATTATATTGGTGTTGA+TGG - chr4_1:79084279-79084298 Msa0575250:CDS 25.0%
!! CATTTTTGAGAGATAATTGG+TGG + chr4_1:79082565-79082584 None:intergenic 30.0%
TGATGATTGATACTATGCTT+TGG + chr4_1:79082851-79082870 None:intergenic 30.0%
! TTGTTGATATTGATTGGTGT+TGG + chr4_1:79082881-79082900 None:intergenic 30.0%
!!! GAACGTTTTTTCTTGTGATT+TGG + chr4_1:79082914-79082933 None:intergenic 30.0%
! TTGTTGTTGGAATGATCAAA+GGG + chr4_1:79083013-79083032 None:intergenic 30.0%
ATGGATTTGAAAATCCCATT+TGG + chr4_1:79083073-79083092 None:intergenic 30.0%
!! TCTTGTTAGCTTTGAAACAA+TGG + chr4_1:79083092-79083111 None:intergenic 30.0%
CAAACAACAATGAAGAACAA+TGG - chr4_1:79083137-79083156 Msa0575250:CDS 30.0%
CAATGAAGAACAATGGAAAA+TGG - chr4_1:79083144-79083163 Msa0575250:CDS 30.0%
!! TATTGTCACACTTTGAAATC+TGG - chr4_1:79083292-79083311 Msa0575250:CDS 30.0%
!! TTTGAGGATTTTGAGTCAAT+AGG - chr4_1:79083622-79083641 Msa0575250:CDS 30.0%
!! TTGAGGATTTTGAGTCAATA+GGG - chr4_1:79083623-79083642 Msa0575250:CDS 30.0%
TAATAGGATATTGAACCCTA+TGG - chr4_1:79083663-79083682 Msa0575250:CDS 30.0%
CTTCATTCAACATGATTCAT+GGG - chr4_1:79083707-79083726 Msa0575250:CDS 30.0%
AGTGAAATTGTTGCTATGTT+GGG - chr4_1:79083808-79083827 Msa0575250:CDS 30.0%
! ACTCTAAAAATTGGCAAACT+TGG + chr4_1:79083928-79083947 None:intergenic 30.0%
CAACTTTGATTCTGTTTACA+TGG - chr4_1:79083960-79083979 Msa0575250:CDS 30.0%
TTCTGTTTACATGGAAGATA+TGG - chr4_1:79083969-79083988 Msa0575250:CDS 30.0%
TCTGTTTACATGGAAGATAT+GGG - chr4_1:79083970-79083989 Msa0575250:CDS 30.0%
TTAAATGTAAGGTTCTTTGC+AGG - chr4_1:79084073-79084092 Msa0575250:CDS 30.0%
! TGGAATTTAGAATTTGGATC+AGG - chr4_1:79084218-79084237 Msa0575250:intron 30.0%
!! GGTTCTATTGTTGTTTATGT+TGG - chr4_1:79084239-79084258 Msa0575250:CDS 30.0%
! TGTATTTTTCATGCTTGAGT+TGG - chr4_1:79084347-79084366 Msa0575250:five_prime_UTR 30.0%
! GTATTTTTCATGCTTGAGTT+GGG - chr4_1:79084348-79084367 Msa0575250:five_prime_UTR 30.0%
GGATATGATATGTCGATATA+TGG - chr4_1:79084369-79084388 Msa0575250:five_prime_UTR 30.0%
!!! TGTCGATATATGGAGTTTTT+TGG - chr4_1:79084379-79084398 Msa0575250:five_prime_UTR 30.0%
!!! GTCGATATATGGAGTTTTTT+GGG - chr4_1:79084380-79084399 Msa0575250:five_prime_UTR 30.0%
! GTGAACAATTTGGCATTTTA+TGG - chr4_1:79084408-79084427 Msa0575250:five_prime_UTR 30.0%
!! CATTTTTGAGAGATAATTGG+TGG + chr4_1:79082565-79082584 None:intergenic 30.0%
TGATGATTGATACTATGCTT+TGG + chr4_1:79082851-79082870 None:intergenic 30.0%
! TTGTTGATATTGATTGGTGT+TGG + chr4_1:79082881-79082900 None:intergenic 30.0%
!!! GAACGTTTTTTCTTGTGATT+TGG + chr4_1:79082914-79082933 None:intergenic 30.0%
! TTGTTGTTGGAATGATCAAA+GGG + chr4_1:79083013-79083032 None:intergenic 30.0%
ATGGATTTGAAAATCCCATT+TGG + chr4_1:79083073-79083092 None:intergenic 30.0%
!! TCTTGTTAGCTTTGAAACAA+TGG + chr4_1:79083092-79083111 None:intergenic 30.0%
CAAACAACAATGAAGAACAA+TGG - chr4_1:79083137-79083156 Msa0575250:CDS 30.0%
CAATGAAGAACAATGGAAAA+TGG - chr4_1:79083144-79083163 Msa0575250:CDS 30.0%
!! TATTGTCACACTTTGAAATC+TGG - chr4_1:79083292-79083311 Msa0575250:CDS 30.0%
!! TTTGAGGATTTTGAGTCAAT+AGG - chr4_1:79083622-79083641 Msa0575250:CDS 30.0%
!! TTGAGGATTTTGAGTCAATA+GGG - chr4_1:79083623-79083642 Msa0575250:CDS 30.0%
TAATAGGATATTGAACCCTA+TGG - chr4_1:79083663-79083682 Msa0575250:CDS 30.0%
CTTCATTCAACATGATTCAT+GGG - chr4_1:79083707-79083726 Msa0575250:CDS 30.0%
AGTGAAATTGTTGCTATGTT+GGG - chr4_1:79083808-79083827 Msa0575250:CDS 30.0%
! ACTCTAAAAATTGGCAAACT+TGG + chr4_1:79083928-79083947 None:intergenic 30.0%
CAACTTTGATTCTGTTTACA+TGG - chr4_1:79083960-79083979 Msa0575250:CDS 30.0%
TTCTGTTTACATGGAAGATA+TGG - chr4_1:79083969-79083988 Msa0575250:CDS 30.0%
TCTGTTTACATGGAAGATAT+GGG - chr4_1:79083970-79083989 Msa0575250:CDS 30.0%
TTAAATGTAAGGTTCTTTGC+AGG - chr4_1:79084073-79084092 Msa0575250:CDS 30.0%
! TGGAATTTAGAATTTGGATC+AGG - chr4_1:79084218-79084237 Msa0575250:intron 30.0%
!! GGTTCTATTGTTGTTTATGT+TGG - chr4_1:79084239-79084258 Msa0575250:CDS 30.0%
! TGTATTTTTCATGCTTGAGT+TGG - chr4_1:79084347-79084366 Msa0575250:five_prime_UTR 30.0%
! GTATTTTTCATGCTTGAGTT+GGG - chr4_1:79084348-79084367 Msa0575250:five_prime_UTR 30.0%
GGATATGATATGTCGATATA+TGG - chr4_1:79084369-79084388 Msa0575250:five_prime_UTR 30.0%
!!! TGTCGATATATGGAGTTTTT+TGG - chr4_1:79084379-79084398 Msa0575250:five_prime_UTR 30.0%
!!! GTCGATATATGGAGTTTTTT+GGG - chr4_1:79084380-79084399 Msa0575250:five_prime_UTR 30.0%
! GTGAACAATTTGGCATTTTA+TGG - chr4_1:79084408-79084427 Msa0575250:five_prime_UTR 30.0%
ATATTATCCGTGACATGTCA+GGG + chr4_1:79082504-79082523 None:intergenic 35.0%
AATATTATCCGTGACATGTC+AGG + chr4_1:79082505-79082524 None:intergenic 35.0%
TACTAAACTGGTGTGAATTG+TGG + chr4_1:79082645-79082664 None:intergenic 35.0%
!! TTGGTGTTGTTCTTCTACTT+TGG + chr4_1:79082814-79082833 None:intergenic 35.0%
!! TTGATATTGATTGGTGTTGG+TGG + chr4_1:79082878-79082897 None:intergenic 35.0%
! TCTGAAACTGAACTAGAAGA+TGG - chr4_1:79082932-79082951 Msa0575250:CDS 35.0%
! AAGATTTTGTCACGAGAATG+TGG + chr4_1:79082983-79083002 None:intergenic 35.0%
! GTTGTTGTTGGAATGATCAA+AGG + chr4_1:79083014-79083033 None:intergenic 35.0%
TCTTTGTTGCAAAGTCCAAA+TGG - chr4_1:79083055-79083074 Msa0575250:CDS 35.0%
CTTTGTTGCAAAGTCCAAAT+GGG - chr4_1:79083056-79083075 Msa0575250:CDS 35.0%
!! TTTGTTGTTGATGCTGACAT+TGG + chr4_1:79083121-79083140 None:intergenic 35.0%
! AGCTTCATCTCTTTTTCTTG+TGG + chr4_1:79083203-79083222 None:intergenic 35.0%
CAACGTTGTACAACATTTCT+TGG - chr4_1:79083408-79083427 Msa0575250:CDS 35.0%
TTGATTCACACCTTTCCATA+GGG + chr4_1:79083681-79083700 None:intergenic 35.0%
GCTTCATTCAACATGATTCA+TGG - chr4_1:79083706-79083725 Msa0575250:CDS 35.0%
GAGTGAAATTGTTGCTATGT+TGG - chr4_1:79083807-79083826 Msa0575250:CDS 35.0%
AAATTGTTGCTATGTTGGGT+TGG - chr4_1:79083812-79083831 Msa0575250:CDS 35.0%
ACAAAGAAAGCTTGCAAAAG+TGG + chr4_1:79083856-79083875 None:intergenic 35.0%
!! TTGTTGCTTCAAAGAGTGTT+TGG - chr4_1:79083872-79083891 Msa0575250:CDS 35.0%
TGTTTGGATGGTTCATTTGT+TGG - chr4_1:79083888-79083907 Msa0575250:CDS 35.0%
TTTACATGGAAGATATGGGT+GGG - chr4_1:79083974-79083993 Msa0575250:CDS 35.0%
ACCAAACATGGTTAGGATTA+TGG - chr4_1:79084017-79084036 Msa0575250:CDS 35.0%
ACCATAATCCTAACCATGTT+TGG + chr4_1:79084021-79084040 None:intergenic 35.0%
CTACCATAGACATAAAAACC+AGG + chr4_1:79084048-79084067 None:intergenic 35.0%
! TGGTAGTGCTGTTAAATGTA+AGG - chr4_1:79084062-79084081 Msa0575250:CDS 35.0%
!! TTTGTTGTTGCTGAGGTTAT+TGG + chr4_1:79084106-79084125 None:intergenic 35.0%
AGCAACAACAAACAAGACAA+AGG - chr4_1:79084114-79084133 Msa0575250:CDS 35.0%
! ATTGGAAAGTGTACTCTGTT+TGG - chr4_1:79084193-79084212 Msa0575250:intron 35.0%
AAAGTGTACTCTGTTTGGTT+TGG - chr4_1:79084198-79084217 Msa0575250:intron 35.0%
!! TTATATTGGTGTTGATGGGT+TGG - chr4_1:79084284-79084303 Msa0575250:CDS 35.0%
ATATTATCCGTGACATGTCA+GGG + chr4_1:79082504-79082523 None:intergenic 35.0%
AATATTATCCGTGACATGTC+AGG + chr4_1:79082505-79082524 None:intergenic 35.0%
TACTAAACTGGTGTGAATTG+TGG + chr4_1:79082645-79082664 None:intergenic 35.0%
!! TTGGTGTTGTTCTTCTACTT+TGG + chr4_1:79082814-79082833 None:intergenic 35.0%
!! TTGATATTGATTGGTGTTGG+TGG + chr4_1:79082878-79082897 None:intergenic 35.0%
! TCTGAAACTGAACTAGAAGA+TGG - chr4_1:79082932-79082951 Msa0575250:CDS 35.0%
! AAGATTTTGTCACGAGAATG+TGG + chr4_1:79082983-79083002 None:intergenic 35.0%
! GTTGTTGTTGGAATGATCAA+AGG + chr4_1:79083014-79083033 None:intergenic 35.0%
TCTTTGTTGCAAAGTCCAAA+TGG - chr4_1:79083055-79083074 Msa0575250:CDS 35.0%
CTTTGTTGCAAAGTCCAAAT+GGG - chr4_1:79083056-79083075 Msa0575250:CDS 35.0%
!! TTTGTTGTTGATGCTGACAT+TGG + chr4_1:79083121-79083140 None:intergenic 35.0%
! AGCTTCATCTCTTTTTCTTG+TGG + chr4_1:79083203-79083222 None:intergenic 35.0%
CAACGTTGTACAACATTTCT+TGG - chr4_1:79083408-79083427 Msa0575250:CDS 35.0%
TTGATTCACACCTTTCCATA+GGG + chr4_1:79083681-79083700 None:intergenic 35.0%
GCTTCATTCAACATGATTCA+TGG - chr4_1:79083706-79083725 Msa0575250:CDS 35.0%
GAGTGAAATTGTTGCTATGT+TGG - chr4_1:79083807-79083826 Msa0575250:CDS 35.0%
AAATTGTTGCTATGTTGGGT+TGG - chr4_1:79083812-79083831 Msa0575250:CDS 35.0%
ACAAAGAAAGCTTGCAAAAG+TGG + chr4_1:79083856-79083875 None:intergenic 35.0%
!! TTGTTGCTTCAAAGAGTGTT+TGG - chr4_1:79083872-79083891 Msa0575250:CDS 35.0%
TGTTTGGATGGTTCATTTGT+TGG - chr4_1:79083888-79083907 Msa0575250:CDS 35.0%
TTTACATGGAAGATATGGGT+GGG - chr4_1:79083974-79083993 Msa0575250:CDS 35.0%
ACCAAACATGGTTAGGATTA+TGG - chr4_1:79084017-79084036 Msa0575250:CDS 35.0%
ACCATAATCCTAACCATGTT+TGG + chr4_1:79084021-79084040 None:intergenic 35.0%
CTACCATAGACATAAAAACC+AGG + chr4_1:79084048-79084067 None:intergenic 35.0%
! TGGTAGTGCTGTTAAATGTA+AGG - chr4_1:79084062-79084081 Msa0575250:CDS 35.0%
!! TTTGTTGTTGCTGAGGTTAT+TGG + chr4_1:79084106-79084125 None:intergenic 35.0%
AGCAACAACAAACAAGACAA+AGG - chr4_1:79084114-79084133 Msa0575250:CDS 35.0%
! ATTGGAAAGTGTACTCTGTT+TGG - chr4_1:79084193-79084212 Msa0575250:intron 35.0%
AAAGTGTACTCTGTTTGGTT+TGG - chr4_1:79084198-79084217 Msa0575250:intron 35.0%
!! TTATATTGGTGTTGATGGGT+TGG - chr4_1:79084284-79084303 Msa0575250:CDS 35.0%
!!! TTTTTTTTGGACCACCTCCT+CGG - chr4_1:79082461-79082480 Msa0575250:three_prime_UTR 40.0%
GGAGATTTGGAAGAAGAAGA+AGG + chr4_1:79082597-79082616 None:intergenic 40.0%
AGGGATTAAAGGAGGAGATT+TGG + chr4_1:79082610-79082629 None:intergenic 40.0%
! TTGGCTTCTGTTTTCACTGT+TGG + chr4_1:79082795-79082814 None:intergenic 40.0%
! TTTGGAGTTGAAGCACTTGT+TGG + chr4_1:79082833-79082852 None:intergenic 40.0%
TGTTGGAATGATCAAAGGGA+AGG + chr4_1:79083009-79083028 None:intergenic 40.0%
AAGCTCTTCAAGAAGCTTCA+AGG - chr4_1:79083218-79083237 Msa0575250:CDS 40.0%
!! TCACACTTTGAAATCTGGTC+TGG - chr4_1:79083297-79083316 Msa0575250:CDS 40.0%
CGTTGTACAACATTTCTTGG+TGG - chr4_1:79083411-79083430 Msa0575250:CDS 40.0%
ACAATGCAACTTAGACACAC+AGG - chr4_1:79083481-79083500 Msa0575250:CDS 40.0%
GGATATTGAACCCTATGGAA+AGG - chr4_1:79083668-79083687 Msa0575250:CDS 40.0%
CTTGATTCACACCTTTCCAT+AGG + chr4_1:79083682-79083701 None:intergenic 40.0%
! ACATGATTCATGGGTTGACT+TGG - chr4_1:79083716-79083735 Msa0575250:CDS 40.0%
! CATGATTCATGGGTTGACTT+GGG - chr4_1:79083717-79083736 Msa0575250:CDS 40.0%
!!! TGGGATGAAGTTTTGAGCAA+AGG - chr4_1:79083736-79083755 Msa0575250:CDS 40.0%
!!! GGGATGAAGTTTTGAGCAAA+GGG - chr4_1:79083737-79083756 Msa0575250:CDS 40.0%
!! TTGCTATGTTGGGTTGGAAT+AGG - chr4_1:79083818-79083837 Msa0575250:CDS 40.0%
!! TGCTATGTTGGGTTGGAATA+GGG - chr4_1:79083819-79083838 Msa0575250:CDS 40.0%
!! TGCTTCAAAGAGTGTTTGGA+TGG - chr4_1:79083876-79083895 Msa0575250:CDS 40.0%
GTTTACATGGAAGATATGGG+TGG - chr4_1:79083973-79083992 Msa0575250:CDS 40.0%
TTACATGGAAGATATGGGTG+GGG - chr4_1:79083975-79083994 Msa0575250:CDS 40.0%
!! TTCAAGGTTGGTACCAAACA+TGG - chr4_1:79084005-79084024 Msa0575250:CDS 40.0%
!! GCTCCTGGTTTTTATGTCTA+TGG - chr4_1:79084042-79084061 Msa0575250:CDS 40.0%
!! TGTCTTGTTTGTTGTTGCTG+AGG + chr4_1:79084113-79084132 None:intergenic 40.0%
!! CTTGATGGGTTTAAGGTGAT+GGG + chr4_1:79084146-79084165 None:intergenic 40.0%
!! ACTTGATGGGTTTAAGGTGA+TGG + chr4_1:79084147-79084166 None:intergenic 40.0%
TTGGGTCAACGTGAACAATT+TGG - chr4_1:79084398-79084417 Msa0575250:five_prime_UTR 40.0%
GGAGGTGGTCCAAAAAAAAT+TGG + chr4_1:79082460-79082479 None:intergenic 40.0%
!!! TTTTTTTTGGACCACCTCCT+CGG - chr4_1:79082461-79082480 Msa0575250:three_prime_UTR 40.0%
GGAGATTTGGAAGAAGAAGA+AGG + chr4_1:79082597-79082616 None:intergenic 40.0%
AGGGATTAAAGGAGGAGATT+TGG + chr4_1:79082610-79082629 None:intergenic 40.0%
! TTGGCTTCTGTTTTCACTGT+TGG + chr4_1:79082795-79082814 None:intergenic 40.0%
! TTTGGAGTTGAAGCACTTGT+TGG + chr4_1:79082833-79082852 None:intergenic 40.0%
TGTTGGAATGATCAAAGGGA+AGG + chr4_1:79083009-79083028 None:intergenic 40.0%
AAGCTCTTCAAGAAGCTTCA+AGG - chr4_1:79083218-79083237 Msa0575250:CDS 40.0%
!! TCACACTTTGAAATCTGGTC+TGG - chr4_1:79083297-79083316 Msa0575250:CDS 40.0%
CGTTGTACAACATTTCTTGG+TGG - chr4_1:79083411-79083430 Msa0575250:CDS 40.0%
ACAATGCAACTTAGACACAC+AGG - chr4_1:79083481-79083500 Msa0575250:CDS 40.0%
GGATATTGAACCCTATGGAA+AGG - chr4_1:79083668-79083687 Msa0575250:CDS 40.0%
CTTGATTCACACCTTTCCAT+AGG + chr4_1:79083682-79083701 None:intergenic 40.0%
! ACATGATTCATGGGTTGACT+TGG - chr4_1:79083716-79083735 Msa0575250:CDS 40.0%
! CATGATTCATGGGTTGACTT+GGG - chr4_1:79083717-79083736 Msa0575250:CDS 40.0%
!!! TGGGATGAAGTTTTGAGCAA+AGG - chr4_1:79083736-79083755 Msa0575250:CDS 40.0%
!!! GGGATGAAGTTTTGAGCAAA+GGG - chr4_1:79083737-79083756 Msa0575250:CDS 40.0%
!! TTGCTATGTTGGGTTGGAAT+AGG - chr4_1:79083818-79083837 Msa0575250:CDS 40.0%
!! TGCTATGTTGGGTTGGAATA+GGG - chr4_1:79083819-79083838 Msa0575250:CDS 40.0%
!! TGCTTCAAAGAGTGTTTGGA+TGG - chr4_1:79083876-79083895 Msa0575250:CDS 40.0%
GTTTACATGGAAGATATGGG+TGG - chr4_1:79083973-79083992 Msa0575250:CDS 40.0%
TTACATGGAAGATATGGGTG+GGG - chr4_1:79083975-79083994 Msa0575250:CDS 40.0%
!! TTCAAGGTTGGTACCAAACA+TGG - chr4_1:79084005-79084024 Msa0575250:CDS 40.0%
!! GCTCCTGGTTTTTATGTCTA+TGG - chr4_1:79084042-79084061 Msa0575250:CDS 40.0%
!! TGTCTTGTTTGTTGTTGCTG+AGG + chr4_1:79084113-79084132 None:intergenic 40.0%
!! CTTGATGGGTTTAAGGTGAT+GGG + chr4_1:79084146-79084165 None:intergenic 40.0%
!! ACTTGATGGGTTTAAGGTGA+TGG + chr4_1:79084147-79084166 None:intergenic 40.0%
TTGGGTCAACGTGAACAATT+TGG - chr4_1:79084398-79084417 Msa0575250:five_prime_UTR 40.0%
GAATGGCGTGAAGGGATTAA+AGG + chr4_1:79082621-79082640 None:intergenic 45.0%
ATTGTGGAGAATGGCGTGAA+GGG + chr4_1:79082629-79082648 None:intergenic 45.0%
AATTGTGGAGAATGGCGTGA+AGG + chr4_1:79082630-79082649 None:intergenic 45.0%
CTGGTGTGAATTGTGGAGAA+TGG + chr4_1:79082638-79082657 None:intergenic 45.0%
GCTGTTACTGCTGTTGTTGT+TGG + chr4_1:79083026-79083045 None:intergenic 45.0%
! GGTTGGTACCAAACATGGTT+AGG - chr4_1:79084010-79084029 Msa0575250:CDS 45.0%
GTTAGGATTATGGTTGCTCC+TGG - chr4_1:79084027-79084046 Msa0575250:CDS 45.0%
GAATGGCGTGAAGGGATTAA+AGG + chr4_1:79082621-79082640 None:intergenic 45.0%
ATTGTGGAGAATGGCGTGAA+GGG + chr4_1:79082629-79082648 None:intergenic 45.0%
AATTGTGGAGAATGGCGTGA+AGG + chr4_1:79082630-79082649 None:intergenic 45.0%
CTGGTGTGAATTGTGGAGAA+TGG + chr4_1:79082638-79082657 None:intergenic 45.0%
GCTGTTACTGCTGTTGTTGT+TGG + chr4_1:79083026-79083045 None:intergenic 45.0%
! GGTTGGTACCAAACATGGTT+AGG - chr4_1:79084010-79084029 Msa0575250:CDS 45.0%
GTTAGGATTATGGTTGCTCC+TGG - chr4_1:79084027-79084046 Msa0575250:CDS 45.0%
!!! ATTTTATTTTTTTTATCATA+TGG - chr4_1:79082704-79082723 Msa0575250:three_prime_UTR 5.0%
!!! ATTTTATTTTTTTTATCATA+TGG - chr4_1:79082704-79082723 Msa0575250:three_prime_UTR 5.0%
TGGCGTGAAGGGATTAAAGG+AGG + chr4_1:79082618-79082637 None:intergenic 50.0%
!! TGTTGGGTTGGAATAGGGCT+TGG - chr4_1:79083824-79083843 Msa0575250:CDS 50.0%
TGGGGACAAGTCTTCAAGGT+TGG - chr4_1:79083993-79084012 Msa0575250:CDS 50.0%
TGGCGTGAAGGGATTAAAGG+AGG + chr4_1:79082618-79082637 None:intergenic 50.0%
!! TGTTGGGTTGGAATAGGGCT+TGG - chr4_1:79083824-79083843 Msa0575250:CDS 50.0%
TGGGGACAAGTCTTCAAGGT+TGG - chr4_1:79083993-79084012 Msa0575250:CDS 50.0%
! ACAGTACAGTACCGAGGAGG+TGG + chr4_1:79082475-79082494 None:intergenic 55.0%
ATCCGTGACATGTCAGGGCA+GGG + chr4_1:79082499-79082518 None:intergenic 55.0%
TATCCGTGACATGTCAGGGC+AGG + chr4_1:79082500-79082519 None:intergenic 55.0%
TGGGTGGGGACAAGTCTTCA+AGG - chr4_1:79083989-79084008 Msa0575250:CDS 55.0%
! ACAGTACAGTACCGAGGAGG+TGG + chr4_1:79082475-79082494 None:intergenic 55.0%
ATCCGTGACATGTCAGGGCA+GGG + chr4_1:79082499-79082518 None:intergenic 55.0%
TATCCGTGACATGTCAGGGC+AGG + chr4_1:79082500-79082519 None:intergenic 55.0%
TGGGTGGGGACAAGTCTTCA+AGG - chr4_1:79083989-79084008 Msa0575250:CDS 55.0%
! GGCACAGTACAGTACCGAGG+AGG + chr4_1:79082478-79082497 None:intergenic 60.0%
CAGGGCACAGTACAGTACCG+AGG + chr4_1:79082481-79082500 None:intergenic 60.0%
TGCCCTGCCCTGACATGTCA+CGG - chr4_1:79082494-79082513 Msa0575250:three_prime_UTR 60.0%
! GGCACAGTACAGTACCGAGG+AGG + chr4_1:79082478-79082497 None:intergenic 60.0%
CAGGGCACAGTACAGTACCG+AGG + chr4_1:79082481-79082500 None:intergenic 60.0%
TGCCCTGCCCTGACATGTCA+CGG - chr4_1:79082494-79082513 Msa0575250:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79082459 79084435 79082459 ID=Msa0575250;Name=Msa0575250
chr4_1 mRNA 79082459 79084435 79082459 ID=Msa0575250-mRNA-1;Parent=Msa0575250;Name=Msa0575250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123|1|1|1|1|1|2|280|489
chr4_1 exon 79082459 79084133 79082459 ID=Msa0575250-mRNA-1:exon:28140;Parent=Msa0575250-mRNA-1
chr4_1 exon 79084238 79084435 79084238 ID=Msa0575250-mRNA-1:exon:28139;Parent=Msa0575250-mRNA-1
chr4_1 five_prime_UTR 79084313 79084435 79084313 ID=Msa0575250-mRNA-1:five_prime_utr;Parent=Msa0575250-mRNA-1
chr4_1 CDS 79084238 79084312 79084238 ID=Msa0575250-mRNA-1:cds;Parent=Msa0575250-mRNA-1
chr4_1 CDS 79082739 79084133 79082739 ID=Msa0575250-mRNA-1:cds;Parent=Msa0575250-mRNA-1
chr4_1 three_prime_UTR 79082459 79082738 79082459 ID=Msa0575250-mRNA-1:three_prime_utr;Parent=Msa0575250-mRNA-1
Gene Sequence

>Msa0575250

ATGACTTCTTCTCCTTCTTCTTCTTCCAAATCTCCTCCTTTAATCCCTTCACGCCATTCTCCACAATTCACACCAATTCAAGAGGAACATGAATTTGATGAATACACCAACAGTGAAAACAGAAGCCAAAGTAGAAGAACAACACCAACAAGTGCTTCAACTCCAAAGCATAGTATCAATCATCATCATCCACCAACACCAATCAATATCAACAAAAACACAAAACCAAATCACAAGAAAAAACGTTCTGAAACTGAACTAGAAGATGGTTCTGTTTCATGCAACAAATGCAGACCACATTCTCGTGACAAAATCTTCATCCTTCCCTTTGATCATTCCAACAACAACAGCAGTAACAGCAAGTATTCATCTTTGTTGCAAAGTCCAAATGGGATTTTCAAATCCATTGTTTCAAAGCTAACAAGAAAAAGTCCAATGTCAGCATCAACAACAAACAACAATGAAGAACAATGGAAAATGGCAGTAGCAGAACTTTCTCACAAACTTGTTCATGCCACAAGAAAAAGAGATGAAGCTCTTCAAGAAGCTTCAAGGCTCATGAATTCTATGTCAGAGTTAGAGAAAAAGTTGAACAAGCTTGAAATTTATTGTCACACTTTGAAATCTGGTCTGGAAGAATGTAACAATATTAATACTACTAATGTTGTTGGTTCTTCTAATGTTGCTCAGAAGAATTTTCATCATCATGTTCAAGACAATGACAACGTTGTACAACATTTCTTGGTGGCTGTTTCTGAAGCAAGATCTTCAGTGAGACTTCTAAGTCGTTCTTTAACAATGCAACTTAGACACACAGGAAGCAAAGTGTATGAAAAAGTTTCTTTACTTTTACAACCTTATGATATAAAAATCTCTTTTTCAAAGAATCCAAGAAGTTTGCTTTTTTACTTGGAAGCACTTTTGAACAAGACATTTTTTGAGGATTTTGAGTCAATAGGGTTTCAAAAGAATGCTTGTAATAGGATATTGAACCCTATGGAAAGGTGTGAATCAAGTTTTGCTTCATTCAACATGATTCATGGGTTGACTTGGGATGAAGTTTTGAGCAAAGGGACAAGACATTTTAGTGAAGATTTTAGTAGATTTTGTGATAGAAAAATGAGTGAAATTGTTGCTATGTTGGGTTGGAATAGGGCTTGGTCTGAACCACTTTTGCAAGCTTTCTTTGTTGCTTCAAAGAGTGTTTGGATGGTTCATTTGTTGGCTAATTCAGTTCATCCAAGTTTGCCAATTTTTAGAGTTGATAAAGGAGTCAACTTTGATTCTGTTTACATGGAAGATATGGGTGGGGACAAGTCTTCAAGGTTGGTACCAAACATGGTTAGGATTATGGTTGCTCCTGGTTTTTATGTCTATGGTAGTGCTGTTAAATGTAAGGTTCTTTGCAGGTACTTGACCAATAACCTCAGCAACAACAAACAAGACAAAGGTTTAAACCCATCACCTTAA

Protein sequence

>Msa0575250

MTSSPSSSSKSPPLIPSRHSPQFTPIQEEHEFDEYTNSENRSQSRRTTPTSASTPKHSINHHHPPTPININKNTKPNHKKKRSETELEDGSVSCNKCRPHSRDKIFILPFDHSNNNSSNSKYSSLLQSPNGIFKSIVSKLTRKSPMSASTTNNNEEQWKMAVAELSHKLVHATRKRDEALQEASRLMNSMSELEKKLNKLEIYCHTLKSGLEECNNINTTNVVGSSNVAQKNFHHHVQDNDNVVQHFLVAVSEARSSVRLLSRSLTMQLRHTGSKVYEKVSLLLQPYDIKISFSKNPRSLLFYLEALLNKTFFEDFESIGFQKNACNRILNPMERCESSFASFNMIHGLTWDEVLSKGTRHFSEDFSRFCDRKMSEIVAMLGWNRAWSEPLLQAFFVASKSVWMVHLLANSVHPSLPIFRVDKGVNFDSVYMEDMGGDKSSRLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLTNNLSNNKQDKGLNPSP*