AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254800 MtrunA17_Chr8g0372381 96.728 489 13 1 2 490 3 488 0.0 976
Msa1254800 MtrunA17_Chr2g0328781 56.660 473 205 0 8 480 20 492 0.0 584
Msa1254800 MtrunA17_Chr4g0032441 56.156 463 203 0 10 472 7 469 0.0 527
Msa1254800 MtrunA17_Chr3g0124811 48.305 472 241 1 5 476 15 483 2.20e-167 481
Msa1254800 MtrunA17_Chr8g0384741 47.548 469 243 1 12 480 73 538 3.31e-159 462
Msa1254800 MtrunA17_Chr1g0159811 49.631 407 202 1 12 418 20 423 5.05e-144 422
Msa1254800 MtrunA17_Chr3g0129271 88.542 192 22 0 174 365 30 221 1.08e-119 351
Msa1254800 MtrunA17_Chr4g0009161 89.720 107 10 1 174 279 115 221 8.05e-60 196
Msa1254800 MtrunA17_Chr2g0294411 28.936 470 303 10 7 461 87 540 1.45e-48 176
Msa1254800 MtrunA17_Chr4g0059521 29.384 422 281 10 30 442 74 487 6.38e-39 147
Msa1254800 MtrunA17_Chr3g0118081 29.343 426 284 10 24 440 98 515 1.86e-37 144
Msa1254800 MtrunA17_Chr3g0118121 29.263 434 290 10 16 440 60 485 4.76e-37 142
Msa1254800 MtrunA17_Chr2g0310091 30.205 341 218 11 104 434 193 523 8.19e-37 142
Msa1254800 MtrunA17_Chr4g0059221 28.818 406 256 11 61 441 138 535 2.80e-35 138
Msa1254800 MtrunA17_Chr3g0117861 29.539 369 243 9 84 441 171 533 3.79e-34 135
Msa1254800 MtrunA17_Chr8g0365221 28.414 454 286 15 7 441 99 532 4.29e-34 134
Msa1254800 MtrunA17_Chr8g0390651 27.409 467 297 16 7 456 61 502 5.98e-31 125
Msa1254800 MtrunA17_Chr6g0485301 30.460 348 221 11 105 441 156 493 1.56e-30 124
Msa1254800 MtrunA17_Chr8g0390631 29.275 345 229 9 105 441 148 485 4.33e-30 122
Msa1254800 MtrunA17_Chr6g0485311 29.942 344 226 10 105 440 154 490 6.59e-28 116
Msa1254800 MtrunA17_Chr4g0074171 26.037 434 279 15 13 423 53 467 2.12e-20 94.0
Msa1254800 MtrunA17_Chr1g0149961 28.615 325 208 9 108 423 158 467 4.63e-20 92.8
Msa1254800 MtrunA17_Chr2g0300801 26.346 353 231 12 108 446 155 492 7.51e-19 89.4
Msa1254800 MtrunA17_Chr4g0049641 25.381 394 272 10 19 401 92 474 1.05e-18 89.0
Msa1254800 MtrunA17_Chr2g0279751 25.500 400 264 14 19 401 65 447 6.33e-18 86.7
Msa1254800 MtrunA17_Chr1g0159821 48.387 62 32 0 7 68 15 76 5.61e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254800 AT4G36250.1 59.016 488 196 1 1 488 1 484 0.0 630
Msa1254800 AT1G44170.1 49.041 469 236 1 7 475 11 476 2.35e-165 476
Msa1254800 AT1G44170.2 49.041 469 236 1 7 475 11 476 2.35e-165 476
Msa1254800 AT4G34240.4 48.414 473 241 1 5 477 57 526 4.52e-158 459
Msa1254800 AT4G34240.1 48.414 473 241 1 5 477 72 541 5.80e-158 460
Msa1254800 AT1G44170.3 50.864 405 196 1 71 475 12 413 1.22e-151 439
Msa1254800 AT4G34240.3 50.505 396 193 1 82 477 7 399 1.41e-139 408
Msa1254800 AT4G34240.2 48.758 322 162 1 5 326 72 390 1.33e-101 310
Msa1254800 AT3G66658.1 31.350 437 275 9 7 427 87 514 1.83e-50 181
Msa1254800 AT3G66658.2 31.350 437 275 9 7 427 87 514 3.02e-50 181
Msa1254800 AT1G74920.2 32.619 420 266 10 30 440 69 480 9.78e-47 169
Msa1254800 AT1G74920.1 32.619 420 266 10 30 440 74 485 1.03e-46 169
Msa1254800 AT3G48170.1 30.260 423 276 11 30 442 74 487 1.11e-41 155
Msa1254800 AT1G79440.1 31.534 352 223 11 104 444 184 528 2.24e-38 147
Msa1254800 AT1G23800.1 27.273 451 295 12 7 441 92 525 4.87e-34 135
Msa1254800 AT3G48000.1 28.919 370 244 10 84 441 167 529 3.74e-33 132
Msa1254800 AT3G24503.1 27.874 348 236 11 102 441 152 492 1.11e-29 122
Msa1254800 AT2G24270.2 29.375 320 212 8 108 423 198 507 8.57e-22 99.0
Msa1254800 AT2G24270.3 28.402 338 228 8 108 441 158 485 1.48e-21 97.8
Msa1254800 AT2G24270.1 28.402 338 228 8 108 441 158 485 1.48e-21 97.8
Msa1254800 AT2G24270.4 28.402 338 228 8 108 441 158 485 1.52e-21 97.8
Msa1254800 AT1G54100.2 26.136 352 233 12 108 446 154 491 8.74e-20 92.8
Msa1254800 AT1G54100.1 26.136 352 233 12 108 446 154 491 8.74e-20 92.8
Msa1254800 AT1G23800.2 28.276 290 179 10 7 282 92 366 2.37e-15 78.6
Msa1254800 AT2G14170.2 23.516 455 313 12 7 443 43 480 3.36e-15 78.6
Msa1254800 AT2G14170.1 23.516 455 313 12 7 443 152 589 8.17e-15 77.4
Msa1254800 AT2G14170.3 23.227 409 286 10 7 401 152 546 2.55e-14 75.9

Find 94 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCCTCAATGACCTTTA+TGG 0.167477 8_2:-53012424 None:intergenic
ATTGATTTGCAATACATTAT+AGG 0.167573 8_2:+53015275 Msa1254800:three_prime_UTR
GCAGATACTGCCCCAATTAT+TGG 0.191437 8_2:-53012309 None:intergenic
TTGGCATTGGATCCAATAAT+TGG 0.193325 8_2:+53012297 Msa1254800:CDS
TTTCTTGAAAGTTGCATCTT+TGG 0.201229 8_2:-53014302 None:intergenic
GGTGTTGGTCAGAGTGGTTT+TGG 0.239610 8_2:+53015006 Msa1254800:CDS
GCATAAATTGCAAGAGGTTT+TGG 0.241150 8_2:-53014274 None:intergenic
CCACCTAGCTCTAGAGTAAC+AGG 0.301770 8_2:-53012881 None:intergenic
ATATAAGATCCTACCTTCTT+AGG 0.324184 8_2:-53010216 None:intergenic
AAAATCAGCACAAAACTCTT+TGG 0.349014 8_2:+53010170 Msa1254800:CDS
AAAGCTCTTTACCAAGATCT+TGG 0.352241 8_2:+53009853 Msa1254800:CDS
TATACAGGTGAATAAAATTC+AGG 0.355113 8_2:+53014225 Msa1254800:intron
GAAAGATCATCAAATATAGT+AGG 0.370943 8_2:-53012911 None:intergenic
AGAACTACACCAAGTGGTTC+TGG 0.378314 8_2:-53010517 None:intergenic
GTTGCTGCTTCAATAGTTCA+TGG 0.387966 8_2:+53013525 Msa1254800:CDS
ACACCAATGTTGTTCATTGT+AGG 0.390428 8_2:-53009700 None:intergenic
CTTAGACACTAATGCCATAA+AGG 0.393893 8_2:+53012410 Msa1254800:CDS
GCATACAGACTGAATTACTT+TGG 0.403077 8_2:+53015159 Msa1254800:CDS
CATGCTGGAGCTTGCTCTGA+TGG 0.406820 8_2:-53012354 None:intergenic
TGGCATTGGATCCAATAATT+GGG 0.411604 8_2:+53012298 Msa1254800:CDS
CAAGTTAGAATTCCTCAGAT+TGG 0.413705 8_2:+53015137 Msa1254800:CDS
TTGAGACAGTACTTCAAAAC+AGG 0.415007 8_2:+53009748 Msa1254800:CDS
TTATGTGATACACTACCATT+TGG 0.419289 8_2:+53014982 Msa1254800:CDS
CATATGGTGCTACATATGTT+AGG 0.420594 8_2:+53015192 Msa1254800:CDS
GATACCTTGGCTCAATTTCA+AGG 0.428430 8_2:-53015098 None:intergenic
GGTGGATCTAACAATATTGT+AGG 0.428757 8_2:-53014063 None:intergenic
AAGAATAGTAGGAGCAAAGT+GGG 0.429810 8_2:+53013209 Msa1254800:CDS
TAAGTACTGAGGAAGGATAT+TGG 0.438509 8_2:-53012391 None:intergenic
ATGGCAGTGAAAAGAATAGT+AGG 0.440145 8_2:+53013198 Msa1254800:CDS
GTGAAAGGCGTCTGAAAATA+CGG 0.443663 8_2:-53015343 None:intergenic
GGAGAAGTACTCATCTGAAT+TGG 0.449394 8_2:+53013281 Msa1254800:CDS
ACACTATGCAGTGTTGGCAT+TGG 0.456843 8_2:+53012284 Msa1254800:intron
AAGCTCTTTACCAAGATCTT+GGG 0.464763 8_2:+53009854 Msa1254800:CDS
CAGGATGCTTCCCAAGATCT+TGG 0.467321 8_2:-53009864 None:intergenic
TGTAGTGGACAAGCATGTAT+AGG 0.471434 8_2:+53013237 Msa1254800:CDS
ATCATGACGGAAGAAATCTT+TGG 0.471719 8_2:+53014099 Msa1254800:CDS
CTTTGGACTAGTGCTACATA+TGG 0.480977 8_2:+53015176 Msa1254800:CDS
ACACTACCATTTGGAGGTGT+TGG 0.484552 8_2:+53014991 Msa1254800:CDS
TCATCACGGTAAGCTTCAAC+AGG 0.489627 8_2:-53009883 None:intergenic
CTGATACTCACAGTGATCAC+TGG 0.503261 8_2:-53014132 None:intergenic
TGTGATACACTACCATTTGG+AGG 0.510788 8_2:+53014985 Msa1254800:CDS
TTGAGCCAAGGTATCCTCCT+TGG 0.511711 8_2:+53015106 Msa1254800:CDS
ACAGAGAAGCATTGTAGTTG+AGG 0.513301 8_2:-53015241 None:intergenic
ATGTTTGAAACCACGGTGAA+AGG 0.514160 8_2:-53015358 None:intergenic
AATCGATTATTTGCTTGTTG+AGG 0.518086 8_2:+53013260 Msa1254800:CDS
ATAATTGGGGCAGTATCTGC+TGG 0.528260 8_2:+53012312 Msa1254800:CDS
AAAATGGATGGCTCCTAAGA+AGG 0.533456 8_2:+53010203 Msa1254800:CDS
TTGGCTCAATTTCAAGGCAA+AGG 0.542814 8_2:-53015092 None:intergenic
TGAACTACCTTAAAATCTGA+AGG 0.546236 8_2:-53012938 None:intergenic
AAAGATCATCAAATATAGTA+GGG 0.548769 8_2:-53012910 None:intergenic
GGTTAAGTAGAGCTTTGAGC+TGG 0.549576 8_2:-53009801 None:intergenic
CTCTGACCAACACCTCCAAA+TGG 0.550552 8_2:-53014997 None:intergenic
TAATGCCATAAAGGTCATTG+AGG 0.552612 8_2:+53012419 Msa1254800:CDS
GCAAGAAATGAAGAGCATGC+TGG 0.556083 8_2:-53012369 None:intergenic
TTACTCCAAGGAGGATACCT+TGG 0.560424 8_2:-53015111 None:intergenic
ACTCCTGTTACTCTAGAGCT+AGG 0.562087 8_2:+53012878 Msa1254800:CDS
TTTGGAGGTGTTGGTCAGAG+TGG 0.564157 8_2:+53015000 Msa1254800:CDS
CTATTGAAGCAGCAACTAGA+GGG 0.568707 8_2:-53013518 None:intergenic
AAAGAATAGTAGGAGCAAAG+TGG 0.572509 8_2:+53013208 Msa1254800:CDS
ATTGTATCAGAAACTTCCTC+AGG 0.573193 8_2:+53014328 Msa1254800:CDS
GTGAATGCATAAATTGCAAG+AGG 0.573538 8_2:-53014280 None:intergenic
ACAGTGATCACTGGAAGTAG+TGG 0.575288 8_2:-53014123 None:intergenic
GGCATTGGATCCAATAATTG+GGG 0.578716 8_2:+53012299 Msa1254800:CDS
AATGCCATAAAGGTCATTGA+GGG 0.579952 8_2:+53012420 Msa1254800:CDS
AATCCTACAATGAACAACAT+TGG 0.581075 8_2:+53009697 Msa1254800:exon
ATGACTATGCTTGCCACACG+TGG 0.587456 8_2:-53012833 None:intergenic
TGTTGAAGCTTACCGTGATG+AGG 0.592972 8_2:+53009885 Msa1254800:CDS
GTATTGAATTTATAAACTCA+AGG 0.594021 8_2:+53014251 Msa1254800:CDS
CGAGAACATGTTTGAAACCA+CGG 0.597995 8_2:-53015365 None:intergenic
ATAAAGGTCATTGAGGGTGG+AGG 0.600689 8_2:+53012426 Msa1254800:CDS
GCCATAAAGGTCATTGAGGG+TGG 0.603042 8_2:+53012423 Msa1254800:CDS
TACAATGAACAACATTGGTG+TGG 0.607534 8_2:+53009702 Msa1254800:exon
GCAAAGTGGGGAGTTTGTAG+TGG 0.610650 8_2:+53013222 Msa1254800:CDS
TAGTGTCTAAGTACTGAGGA+AGG 0.614966 8_2:-53012398 None:intergenic
GTCATGATTTCAGCATCTAG+TGG 0.618737 8_2:-53014084 None:intergenic
GATTGCACAATCTCTCAAAG+TGG 0.621444 8_2:-53013485 None:intergenic
AGAATAGTAGGAGCAAAGTG+GGG 0.628018 8_2:+53013210 Msa1254800:CDS
TTTGCCTTGAAATTGAGCCA+AGG 0.634603 8_2:+53015094 Msa1254800:CDS
ACTATTGAAGCAGCAACTAG+AGG 0.638003 8_2:-53013519 None:intergenic
TCAGTCTGTATGCCAATCTG+AGG 0.638610 8_2:-53015149 None:intergenic
AAAATGAGAACTACACCAAG+TGG 0.638963 8_2:-53010523 None:intergenic
GAGTTACTGCCAGAACCACT+TGG 0.646451 8_2:+53010508 Msa1254800:CDS
TCTAACTTGAACTTACTCCA+AGG 0.647081 8_2:-53015123 None:intergenic
ATGATTTCAGCATCTAGTGG+TGG 0.655142 8_2:-53014081 None:intergenic
ATTAAATATGACACTTCCTG+AGG 0.657142 8_2:-53014344 None:intergenic
GCTGCTTCAATAGTTCATGG+TGG 0.661244 8_2:+53013528 Msa1254800:CDS
TTTGCTGGGAAGAAAAGCAG+AGG 0.663378 8_2:-53010481 None:intergenic
AAGGCGTCTGAAAATACGGT+GGG 0.663404 8_2:-53015339 None:intergenic
CCTGTTACTCTAGAGCTAGG+TGG 0.670414 8_2:+53012881 Msa1254800:CDS
GCATTAGTGTCTAAGTACTG+AGG 0.688176 8_2:-53012402 None:intergenic
ACTAGATGCTGAAATCATGA+CGG 0.689032 8_2:+53014086 Msa1254800:CDS
TGTCAAACGAGTATTTCCCA+TGG 0.692335 8_2:-53015035 None:intergenic
AACTTGAACTTACTCCAAGG+AGG 0.715059 8_2:-53015120 None:intergenic
AAAGGCGTCTGAAAATACGG+TGG 0.717505 8_2:-53015340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATAATTTATATATT+TGG - chr8_2:53011498-53011517 None:intergenic 0.0%
!!! TTAAGTATTTTTTTCTTTTT+GGG - chr8_2:53010091-53010110 None:intergenic 10.0%
!!! TTTAAGTATTTTTTTCTTTT+TGG - chr8_2:53010092-53010111 None:intergenic 10.0%
!! AACAAAAAATAAAATAAAAG+GGG - chr8_2:53010262-53010281 None:intergenic 10.0%
!!! CTCATTTTTATTTATATTTT+GGG - chr8_2:53010619-53010638 None:intergenic 10.0%
!!! ACTCATTTTTATTTATATTT+TGG - chr8_2:53010620-53010639 None:intergenic 10.0%
!!! GTATTAGTAATTTTTTTTAA+GGG - chr8_2:53011292-53011311 None:intergenic 10.0%
!!! AGTATTAGTAATTTTTTTTA+AGG - chr8_2:53011293-53011312 None:intergenic 10.0%
!!! TATATACATTTTAATTTGAT+TGG + chr8_2:53012567-53012586 Msa1254800:intron 10.0%
!! TAAAAGAATAAAACTTATAA+TGG - chr8_2:53013848-53013867 None:intergenic 10.0%
!!! TATACTTTTTTTTTAGGAAA+AGG + chr8_2:53009909-53009928 Msa1254800:intron 15.0%
!!! ATACTTTTTTTTTAGGAAAA+GGG + chr8_2:53009910-53009929 Msa1254800:intron 15.0%
!!! TTTTTTCATATAACAAAAAC+AGG - chr8_2:53011425-53011444 None:intergenic 15.0%
!!! ATTGTATTTTATTTTGTTAG+GGG - chr8_2:53011866-53011885 None:intergenic 15.0%
!!! GATTGTATTTTATTTTGTTA+GGG - chr8_2:53011867-53011886 None:intergenic 15.0%
!!! AAAATTGTACATTTTCAAAT+GGG - chr8_2:53014465-53014484 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr8_2:53014505-53014524 None:intergenic 15.0%
!!! AGTTGAAAATAATATTTTTG+AGG + chr8_2:53014736-53014755 Msa1254800:intron 15.0%
!!! GATTTTTATATTCAATAATC+TGG + chr8_2:53014849-53014868 Msa1254800:intron 15.0%
!!! AAAAACAGTGATTTTTATTA+TGG - chr8_2:53014915-53014934 None:intergenic 15.0%
!!! TGAGGTTATACTTTTTTTTT+AGG + chr8_2:53009903-53009922 Msa1254800:intron 20.0%
!!! AACTATTTTCACTGTTATTA+TGG + chr8_2:53010437-53010456 Msa1254800:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr8_2:53010850-53010869 Msa1254800:intron 20.0%
!! CAAAAAAAAAAAAAACAGGA+GGG - chr8_2:53011391-53011410 None:intergenic 20.0%
!! TCAAAAAAAAAAAAAACAGG+AGG - chr8_2:53011392-53011411 None:intergenic 20.0%
!! TGCTCAAAAAAAAAAAAAAC+AGG - chr8_2:53011395-53011414 None:intergenic 20.0%
!!! TTTTTATAATAATAACCGGA+TGG + chr8_2:53011534-53011553 Msa1254800:intron 20.0%
!! CAATTCTTCTAACAAAATTA+AGG + chr8_2:53011791-53011810 Msa1254800:intron 20.0%
!!! TTGTATTTTATTTTGTTAGG+GGG - chr8_2:53011865-53011884 None:intergenic 20.0%
!!! GGATTGTATTTTATTTTGTT+AGG - chr8_2:53011868-53011887 None:intergenic 20.0%
!! AAAGATCATCAAATATAGTA+GGG - chr8_2:53012913-53012932 None:intergenic 20.0%
!!! TAGTAACTTAGTAAGTTTTT+TGG + chr8_2:53013362-53013381 Msa1254800:intron 20.0%
!!! AAGTTCATGAGAAAATTTTA+TGG + chr8_2:53013414-53013433 Msa1254800:CDS 20.0%
!! AATTAATGTGTAGTGATTAT+AGG - chr8_2:53013595-53013614 None:intergenic 20.0%
!!! GAAACTATATGTCAAATTTT+GGG - chr8_2:53013676-53013695 None:intergenic 20.0%
!!! TGAAACTATATGTCAAATTT+TGG - chr8_2:53013677-53013696 None:intergenic 20.0%
!! GTATTGAATTTATAAACTCA+AGG + chr8_2:53014251-53014270 Msa1254800:CDS 20.0%
!!! CAAAATTGTACATTTTCAAA+TGG - chr8_2:53014466-53014485 None:intergenic 20.0%
!! TCAATTGTATCATGTATTAT+GGG + chr8_2:53014658-53014677 Msa1254800:intron 20.0%
!!! ATTGATTTGCAATACATTAT+AGG + chr8_2:53015275-53015294 Msa1254800:three_prime_UTR 20.0%
!! CATCTTCATTTTCATGAATT+AGG - chr8_2:53009825-53009844 None:intergenic 25.0%
!! AAAAAAGTATAACCTCATCA+CGG - chr8_2:53009900-53009919 None:intergenic 25.0%
! TTATAATCCCATCAAAGTAA+AGG + chr8_2:53010280-53010299 Msa1254800:intron 25.0%
! TATAATCCCATCAAAGTAAA+GGG + chr8_2:53010281-53010300 Msa1254800:intron 25.0%
! TAGACAAAAGAAATTGATAC+AGG - chr8_2:53010321-53010340 None:intergenic 25.0%
! TAATTAACTGTTACATGTTC+TGG + chr8_2:53010355-53010374 Msa1254800:intron 25.0%
!!! TAGTTCTCATTTTTTCTTCT+TGG + chr8_2:53010533-53010552 Msa1254800:CDS 25.0%
!! AAATTTTGTGACTTACTGAT+TGG - chr8_2:53010565-53010584 None:intergenic 25.0%
!! AAGGAGTATAAAAAAAAGGT+GGG - chr8_2:53010593-53010612 None:intergenic 25.0%
!!! TTATTTATATTTTGGGACGA+AGG - chr8_2:53010612-53010631 None:intergenic 25.0%
!! ACCTAATTTTCACAACATTA+AGG - chr8_2:53011198-53011217 None:intergenic 25.0%
! TTAATGTTGTGAAAATTAGG+TGG + chr8_2:53011197-53011216 Msa1254800:intron 25.0%
!!! AATCACTTTAGAATATTGTG+CGG - chr8_2:53011317-53011336 None:intergenic 25.0%
! TTCATATAACAAAAACAGGA+GGG - chr8_2:53011421-53011440 None:intergenic 25.0%
! TTTCATATAACAAAAACAGG+AGG - chr8_2:53011422-53011441 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr8_2:53011715-53011734 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr8_2:53011680-53011699 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr8_2:53011715-53011734 Msa1254800:intron 25.0%
! TTATTCCTCAAGTAATAGAA+AGG - chr8_2:53012116-53012135 None:intergenic 25.0%
! CTTTGATTATTGTCAAACTT+TGG + chr8_2:53012222-53012241 Msa1254800:intron 25.0%
! CAAGTTTAGTGAAATGAATT+AGG - chr8_2:53012524-53012543 None:intergenic 25.0%
! AATTCATTTCACTAAACTTG+TGG + chr8_2:53012524-53012543 Msa1254800:intron 25.0%
! TTTGAATTAGAATTTCCTTG+CGG + chr8_2:53012612-53012631 Msa1254800:intron 25.0%
! GAAAGATCATCAAATATAGT+AGG - chr8_2:53012914-53012933 None:intergenic 25.0%
!! TTCAAATCCTTCAGATTTTA+AGG + chr8_2:53012931-53012950 Msa1254800:CDS 25.0%
!!! AGCCAAAGTTTTTTAAATCA+CGG - chr8_2:53013121-53013140 None:intergenic 25.0%
! TGTCATATTATTGAAGATCA+AGG + chr8_2:53013149-53013168 Msa1254800:intron 25.0%
!!! TAGTTTGATTTTTACCAAGA+TGG + chr8_2:53013179-53013198 Msa1254800:intron 25.0%
! AAAATAAGCCCAAAATTTAG+AGG - chr8_2:53013730-53013749 None:intergenic 25.0%
!! TTTACTTCAGTTACTTTCAT+TGG - chr8_2:53013986-53014005 None:intergenic 25.0%
!! ATTTTATTCACCTGTATAGA+TGG - chr8_2:53014223-53014242 None:intergenic 25.0%
! TATACAGGTGAATAAAATTC+AGG + chr8_2:53014225-53014244 Msa1254800:intron 25.0%
! AGAGAGTAATATGTATCAAA+CGG - chr8_2:53014424-53014443 None:intergenic 25.0%
! AAATATGGTCAAAGTAAGTT+AGG - chr8_2:53014490-53014509 None:intergenic 25.0%
! TTAAGCTCAAAATTATGCAT+TGG + chr8_2:53014621-53014640 Msa1254800:intron 25.0%
! GTCAATTGTATCATGTATTA+TGG + chr8_2:53014657-53014676 Msa1254800:intron 25.0%
! CTTTATAGAGAAATGCTAAT+TGG - chr8_2:53014826-53014845 None:intergenic 25.0%
AATCCTACAATGAACAACAT+TGG + chr8_2:53009697-53009716 Msa1254800:exon 30.0%
!! GAAAAACAAGAAGTGTTACA+TGG + chr8_2:53009770-53009789 Msa1254800:CDS 30.0%
!! GAGTGATTACTTTTGTAGAT+TGG + chr8_2:53010138-53010157 Msa1254800:intron 30.0%
!! TGATTACTTTTGTAGATTGG+AGG + chr8_2:53010141-53010160 Msa1254800:intron 30.0%
!! GATTACTTTTGTAGATTGGA+GGG + chr8_2:53010142-53010161 Msa1254800:intron 30.0%
!! ATTACTTTTGTAGATTGGAG+GGG + chr8_2:53010143-53010162 Msa1254800:intron 30.0%
AAAATCAGCACAAAACTCTT+TGG + chr8_2:53010170-53010189 Msa1254800:CDS 30.0%
ATATAAGATCCTACCTTCTT+AGG - chr8_2:53010219-53010238 None:intergenic 30.0%
CAAAAGAAATTGATACAGGT+TGG - chr8_2:53010317-53010336 None:intergenic 30.0%
!! TTTGTCCATACTTTTGTTGT+TGG + chr8_2:53010401-53010420 Msa1254800:intron 30.0%
TAAGTCCAACAACAAAAGTA+TGG - chr8_2:53010409-53010428 None:intergenic 30.0%
! AGGAGTATAAAAAAAAGGTG+GGG - chr8_2:53010592-53010611 None:intergenic 30.0%
! GAAGGAGTATAAAAAAAAGG+TGG - chr8_2:53010594-53010613 None:intergenic 30.0%
! GACGAAGGAGTATAAAAAAA+AGG - chr8_2:53010597-53010616 None:intergenic 30.0%
! TTGTTGACTAGAATATCCTT+AGG + chr8_2:53010782-53010801 Msa1254800:intron 30.0%
!! AATATCCTTAGGCTTTGTTT+GGG + chr8_2:53010793-53010812 Msa1254800:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG - chr8_2:53011027-53011046 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG - chr8_2:53011028-53011047 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - chr8_2:53011029-53011048 None:intergenic 30.0%
ATAAAAAATCCCCCTCATTT+GGG - chr8_2:53011051-53011070 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG - chr8_2:53011052-53011071 None:intergenic 30.0%
AGGAAGAAATAGAAGACATT+GGG - chr8_2:53011109-53011128 None:intergenic 30.0%
!! ACAACATTAAGGCTTTGTTT+GGG - chr8_2:53011187-53011206 None:intergenic 30.0%
GCCTTAATGTTGTGAAAATT+AGG + chr8_2:53011194-53011213 Msa1254800:intron 30.0%
!! ATCACTTTAGAATATTGTGC+GGG - chr8_2:53011316-53011335 None:intergenic 30.0%
! TTAAGGCTTAATAGCAGTTT+TGG + chr8_2:53011808-53011827 Msa1254800:intron 30.0%
!! AGCATTGACTTTGTCAAAAT+TGG - chr8_2:53011933-53011952 None:intergenic 30.0%
GTAAACCTTTCTATTACTTG+AGG + chr8_2:53012108-53012127 Msa1254800:intron 30.0%
AACAACTACTGCTACAAAAA+TGG + chr8_2:53012460-53012479 Msa1254800:CDS 30.0%
ACAACTACTGCTACAAAAAT+GGG + chr8_2:53012461-53012480 Msa1254800:CDS 30.0%
! TGGGACAAAATATTTTTCAC+TGG + chr8_2:53012480-53012499 Msa1254800:CDS 30.0%
TGAAATGAATTAGGCTGTTA+TGG - chr8_2:53012515-53012534 None:intergenic 30.0%
GCAAGGAAATTCTAATTCAA+AGG - chr8_2:53012613-53012632 None:intergenic 30.0%
! GTTCTAGATTTATCTCTACA+TGG + chr8_2:53012789-53012808 Msa1254800:intron 30.0%
TGAACTACCTTAAAATCTGA+AGG - chr8_2:53012941-53012960 None:intergenic 30.0%
GACCGTGATTTAAAAAACTT+TGG + chr8_2:53013116-53013135 Msa1254800:intron 30.0%
! AATCGATTATTTGCTTGTTG+AGG + chr8_2:53013260-53013279 Msa1254800:CDS 30.0%
! ATTTTATGGTGACAACATGA+TGG + chr8_2:53013428-53013447 Msa1254800:CDS 30.0%
AAGAGACTACTATTACATAC+AGG - chr8_2:53013572-53013591 None:intergenic 30.0%
TTTCTTGAAAGTTGCATCTT+TGG - chr8_2:53014305-53014324 None:intergenic 30.0%
ATTAAATATGACACTTCCTG+AGG - chr8_2:53014347-53014366 None:intergenic 30.0%
GAGAGTAATATGTATCAAAC+GGG - chr8_2:53014423-53014442 None:intergenic 30.0%
TTGTATCATGTATTATGGGA+CGG + chr8_2:53014662-53014681 Msa1254800:intron 30.0%
!! AATATTTTTGAGGAGTTGAC+TGG + chr8_2:53014746-53014765 Msa1254800:intron 30.0%
ACAAAGTTGAATCTATCGAA+TGG + chr8_2:53014882-53014901 Msa1254800:intron 30.0%
TTATGTGATACACTACCATT+TGG + chr8_2:53014982-53015001 Msa1254800:CDS 30.0%
!!! TATGCAATACAGCTTTTTCA+TGG - chr8_2:53015068-53015087 None:intergenic 30.0%
ACACCAATGTTGTTCATTGT+AGG - chr8_2:53009703-53009722 None:intergenic 35.0%
TACAATGAACAACATTGGTG+TGG + chr8_2:53009702-53009721 Msa1254800:exon 35.0%
TTGAGACAGTACTTCAAAAC+AGG + chr8_2:53009748-53009767 Msa1254800:CDS 35.0%
AAAGCTCTTTACCAAGATCT+TGG + chr8_2:53009853-53009872 Msa1254800:CDS 35.0%
AAGCTCTTTACCAAGATCTT+GGG + chr8_2:53009854-53009873 Msa1254800:CDS 35.0%
CTTTGGACTGTGTTGAAAAA+TGG + chr8_2:53010187-53010206 Msa1254800:CDS 35.0%
AAAATGAGAACTACACCAAG+TGG - chr8_2:53010526-53010545 None:intergenic 35.0%
GTATAAAAAAAAGGTGGGGT+AGG - chr8_2:53010588-53010607 None:intergenic 35.0%
!! GAATATCCTTAGGCTTTGTT+TGG + chr8_2:53010792-53010811 Msa1254800:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG - chr8_2:53011023-53011042 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr8_2:53011030-53011049 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+GGG - chr8_2:53011050-53011069 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG - chr8_2:53011106-53011125 None:intergenic 35.0%
GAGGAAGAAATAGAAGACAT+TGG - chr8_2:53011110-53011129 None:intergenic 35.0%
!! CACAACATTAAGGCTTTGTT+TGG - chr8_2:53011188-53011207 None:intergenic 35.0%
GTGGTAAGACTAATTAATGC+AGG + chr8_2:53011216-53011235 Msa1254800:intron 35.0%
CTTTGGTATATTACTCCATC+CGG - chr8_2:53011552-53011571 None:intergenic 35.0%
GATGGAGTAATATACCAAAG+AGG + chr8_2:53011552-53011571 Msa1254800:intron 35.0%
ACTTTGTCAAAATTGGACTG+GGG - chr8_2:53011926-53011945 None:intergenic 35.0%
GACTTTGTCAAAATTGGACT+GGG - chr8_2:53011927-53011946 None:intergenic 35.0%
TGACTTTGTCAAAATTGGAC+TGG - chr8_2:53011928-53011947 None:intergenic 35.0%
!!! CACGTGCGTAATTTTTTTAG+AGG + chr8_2:53011964-53011983 Msa1254800:intron 35.0%
TTTAATCTAACAGCAAGACG+AGG + chr8_2:53012178-53012197 Msa1254800:intron 35.0%
ACATTTACACTATGCAGTGT+TGG + chr8_2:53012278-53012297 Msa1254800:intron 35.0%
! TTGGCATTGGATCCAATAAT+TGG + chr8_2:53012297-53012316 Msa1254800:CDS 35.0%
! TGGCATTGGATCCAATAATT+GGG + chr8_2:53012298-53012317 Msa1254800:CDS 35.0%
!! TAAGTACTGAGGAAGGATAT+TGG - chr8_2:53012394-53012413 None:intergenic 35.0%
CTTAGACACTAATGCCATAA+AGG + chr8_2:53012410-53012429 Msa1254800:CDS 35.0%
TAATGCCATAAAGGTCATTG+AGG + chr8_2:53012419-53012438 Msa1254800:CDS 35.0%
AATGCCATAAAGGTCATTGA+GGG + chr8_2:53012420-53012439 Msa1254800:CDS 35.0%
!! AGTCGTTTCCTTTTGATTGA+TGG + chr8_2:53012734-53012753 Msa1254800:intron 35.0%
CGAAGAAACCATCAATCAAA+AGG - chr8_2:53012745-53012764 None:intergenic 35.0%
! ACATGGTGTATGACATTTTC+AGG + chr8_2:53012806-53012825 Msa1254800:intron 35.0%
! TATTCTTTTCACTGCCATCT+TGG - chr8_2:53013196-53013215 None:intergenic 35.0%
ATGGCAGTGAAAAGAATAGT+AGG + chr8_2:53013198-53013217 Msa1254800:CDS 35.0%
AAAGAATAGTAGGAGCAAAG+TGG + chr8_2:53013208-53013227 Msa1254800:CDS 35.0%
AAGAATAGTAGGAGCAAAGT+GGG + chr8_2:53013209-53013228 Msa1254800:CDS 35.0%
!!! GCTGCTATTTTTTTCTTCTG+AGG + chr8_2:53013325-53013344 Msa1254800:intron 35.0%
! AAATCCACGCCTCTAAATTT+TGG + chr8_2:53013718-53013737 Msa1254800:intron 35.0%
! AATCCACGCCTCTAAATTTT+GGG + chr8_2:53013719-53013738 Msa1254800:intron 35.0%
CAGTTTCTTACAACTTTGTC+AGG + chr8_2:53014031-53014050 Msa1254800:intron 35.0%
GGTGGATCTAACAATATTGT+AGG - chr8_2:53014066-53014085 None:intergenic 35.0%
ACTAGATGCTGAAATCATGA+CGG + chr8_2:53014086-53014105 Msa1254800:CDS 35.0%
! ATCATGACGGAAGAAATCTT+TGG + chr8_2:53014099-53014118 Msa1254800:CDS 35.0%
!! ACTTAACTTGCCATCTATAC+AGG + chr8_2:53014210-53014229 Msa1254800:intron 35.0%
! GCATAAATTGCAAGAGGTTT+TGG - chr8_2:53014277-53014296 None:intergenic 35.0%
GTGAATGCATAAATTGCAAG+AGG - chr8_2:53014283-53014302 None:intergenic 35.0%
ATTGTATCAGAAACTTCCTC+AGG + chr8_2:53014328-53014347 Msa1254800:CDS 35.0%
! TGTATCAAACGGGTTCAAAA+TGG - chr8_2:53014413-53014432 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG - chr8_2:53014452-53014471 None:intergenic 35.0%
TCTAACTTGAACTTACTCCA+AGG - chr8_2:53015126-53015145 None:intergenic 35.0%
CAAGTTAGAATTCCTCAGAT+TGG + chr8_2:53015137-53015156 Msa1254800:CDS 35.0%
GCATACAGACTGAATTACTT+TGG + chr8_2:53015159-53015178 Msa1254800:CDS 35.0%
!! CATATGGTGCTACATATGTT+AGG + chr8_2:53015192-53015211 Msa1254800:CDS 35.0%
GGACTGTGTTGAAAAATGGA+TGG + chr8_2:53010191-53010210 Msa1254800:CDS 40.0%
AAAATGGATGGCTCCTAAGA+AGG + chr8_2:53010203-53010222 Msa1254800:CDS 40.0%
TCCCATCAAAGTAAAGGGAT+TGG + chr8_2:53010286-53010305 Msa1254800:intron 40.0%
CCCAATCCCTTTACTTTGAT+GGG - chr8_2:53010290-53010309 None:intergenic 40.0%
CCCATCAAAGTAAAGGGATT+GGG + chr8_2:53010287-53010306 Msa1254800:intron 40.0%
ACCCAATCCCTTTACTTTGA+TGG - chr8_2:53010291-53010310 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr8_2:53010801-53010820 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr8_2:53010800-53010819 Msa1254800:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG - chr8_2:53011024-53011043 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr8_2:53011036-53011055 Msa1254800:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr8_2:53011037-53011056 Msa1254800:intron 40.0%
AAAAAATCCCCCTCATTTGG+GGG - chr8_2:53011049-53011068 None:intergenic 40.0%
GGAAAAAAGGAAGGAACAAG+AGG - chr8_2:53011129-53011148 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - chr8_2:53011138-53011157 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr8_2:53011180-53011199 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr8_2:53011719-53011738 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr8_2:53011718-53011737 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr8_2:53011718-53011737 Msa1254800:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr8_2:53011719-53011738 Msa1254800:intron 40.0%
TGAAGAATTCTGCAGCATAG+TGG - chr8_2:53011759-53011778 None:intergenic 40.0%
TCGCAACTTCCTGATACTTA+GGG - chr8_2:53011836-53011855 None:intergenic 40.0%
ATCGCAACTTCCTGATACTT+AGG - chr8_2:53011837-53011856 None:intergenic 40.0%
! GTATCAGGAAGTTGCGATTT+TGG + chr8_2:53011839-53011858 Msa1254800:intron 40.0%
! CTTTGTCAAAATTGGACTGG+GGG - chr8_2:53011925-53011944 None:intergenic 40.0%
! GGCATTGGATCCAATAATTG+GGG + chr8_2:53012299-53012318 Msa1254800:CDS 40.0%
!! TAGTGTCTAAGTACTGAGGA+AGG - chr8_2:53012401-53012420 None:intergenic 40.0%
! GCATTAGTGTCTAAGTACTG+AGG - chr8_2:53012405-53012424 None:intergenic 40.0%
GCACATAAGTCCAATGTTAC+CGG - chr8_2:53012671-53012690 None:intergenic 40.0%
GTTGTTTGTGACCACAATTG+TGG + chr8_2:53012990-53013009 Msa1254800:intron 40.0%
TGTTGTCTCTGCTACAATTG+TGG + chr8_2:53013031-53013050 Msa1254800:intron 40.0%
AGAATAGTAGGAGCAAAGTG+GGG + chr8_2:53013210-53013229 Msa1254800:CDS 40.0%
!! TGTAGTGGACAAGCATGTAT+AGG + chr8_2:53013237-53013256 Msa1254800:CDS 40.0%
!! GGAGAAGTACTCATCTGAAT+TGG + chr8_2:53013281-53013300 Msa1254800:CDS 40.0%
GATTGCACAATCTCTCAAAG+TGG - chr8_2:53013488-53013507 None:intergenic 40.0%
CTATTGAAGCAGCAACTAGA+GGG - chr8_2:53013521-53013540 None:intergenic 40.0%
ACTATTGAAGCAGCAACTAG+AGG - chr8_2:53013522-53013541 None:intergenic 40.0%
! GTTGCTGCTTCAATAGTTCA+TGG + chr8_2:53013525-53013544 Msa1254800:CDS 40.0%
ATGATTTCAGCATCTAGTGG+TGG - chr8_2:53014084-53014103 None:intergenic 40.0%
GTCATGATTTCAGCATCTAG+TGG - chr8_2:53014087-53014106 None:intergenic 40.0%
TCAAATGGGTCATCTATTGC+GGG - chr8_2:53014451-53014470 None:intergenic 40.0%
TATCATGTATTATGGGACGG+AGG + chr8_2:53014665-53014684 Msa1254800:intron 40.0%
ATCATGTATTATGGGACGGA+GGG + chr8_2:53014666-53014685 Msa1254800:intron 40.0%
TAAAGGATGGGAACTGGTTA+AGG + chr8_2:53014693-53014712 Msa1254800:intron 40.0%
TGTGATACACTACCATTTGG+AGG + chr8_2:53014985-53015004 Msa1254800:CDS 40.0%
TGTCAAACGAGTATTTCCCA+TGG - chr8_2:53015038-53015057 None:intergenic 40.0%
TTGGCTCAATTTCAAGGCAA+AGG - chr8_2:53015095-53015114 None:intergenic 40.0%
TTTGCCTTGAAATTGAGCCA+AGG + chr8_2:53015094-53015113 Msa1254800:CDS 40.0%
GATACCTTGGCTCAATTTCA+AGG - chr8_2:53015101-53015120 None:intergenic 40.0%
AACTTGAACTTACTCCAAGG+AGG - chr8_2:53015123-53015142 None:intergenic 40.0%
!! CTTTGGACTAGTGCTACATA+TGG + chr8_2:53015176-53015195 Msa1254800:CDS 40.0%
!! ACAGAGAAGCATTGTAGTTG+AGG - chr8_2:53015244-53015263 None:intergenic 40.0%
!! GTGAAAGGCGTCTGAAAATA+CGG - chr8_2:53015346-53015365 None:intergenic 40.0%
! ATGTTTGAAACCACGGTGAA+AGG - chr8_2:53015361-53015380 None:intergenic 40.0%
! CGAGAACATGTTTGAAACCA+CGG - chr8_2:53015368-53015387 None:intergenic 40.0%
!! GGTTAAGTAGAGCTTTGAGC+TGG - chr8_2:53009804-53009823 None:intergenic 45.0%
TCATCACGGTAAGCTTCAAC+AGG - chr8_2:53009886-53009905 None:intergenic 45.0%
TGTTGAAGCTTACCGTGATG+AGG + chr8_2:53009885-53009904 Msa1254800:CDS 45.0%
TTTGCTGGGAAGAAAAGCAG+AGG - chr8_2:53010484-53010503 None:intergenic 45.0%
!! CTGCTTTTCTTCCCAGCAAA+AGG + chr8_2:53010484-53010503 Msa1254800:CDS 45.0%
! GCAGTAACTCTCCTTTTGCT+GGG - chr8_2:53010498-53010517 None:intergenic 45.0%
AGAACTACACCAAGTGGTTC+TGG - chr8_2:53010520-53010539 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_2:53010804-53010823 Msa1254800:intron 45.0%
TTTGGGAGTTTGGAGGGAAA+GGG + chr8_2:53010810-53010829 Msa1254800:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG - chr8_2:53011016-53011035 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG - chr8_2:53011017-53011036 None:intergenic 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG + chr8_2:53011038-53011057 Msa1254800:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - chr8_2:53011100-53011119 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG - chr8_2:53011101-53011120 None:intergenic 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - chr8_2:53011142-53011161 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_2:53010805-53010824 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr8_2:53010804-53010823 None:intergenic 45.0%
TTGTCTCGCATTGTCCTCTT+TGG - chr8_2:53011569-53011588 None:intergenic 45.0%
AGAATTCTGCAGCATAGTGG+CGG - chr8_2:53011756-53011775 None:intergenic 45.0%
GCAACTTCCTGATACTTAGG+GGG - chr8_2:53011834-53011853 None:intergenic 45.0%
CGCAACTTCCTGATACTTAG+GGG - chr8_2:53011835-53011854 None:intergenic 45.0%
CAAAAGGGGCAGTACTTAAG+GGG - chr8_2:53011893-53011912 None:intergenic 45.0%
GCAAAAGGGGCAGTACTTAA+GGG - chr8_2:53011894-53011913 None:intergenic 45.0%
TGCAAAAGGGGCAGTACTTA+AGG - chr8_2:53011895-53011914 None:intergenic 45.0%
! TACTGCCCCTTTTGCAGTTT+TGG + chr8_2:53011899-53011918 Msa1254800:intron 45.0%
TGACAAAGTCAATGCTGACG+TGG + chr8_2:53011937-53011956 Msa1254800:intron 45.0%
!! ACACTATGCAGTGTTGGCAT+TGG + chr8_2:53012284-53012303 Msa1254800:intron 45.0%
GCAGATACTGCCCCAATTAT+TGG - chr8_2:53012312-53012331 None:intergenic 45.0%
ATAATTGGGGCAGTATCTGC+TGG + chr8_2:53012312-53012331 Msa1254800:CDS 45.0%
! GCAAGAAATGAAGAGCATGC+TGG - chr8_2:53012372-53012391 None:intergenic 45.0%
TCCACCCTCAATGACCTTTA+TGG - chr8_2:53012427-53012446 None:intergenic 45.0%
ATAAAGGTCATTGAGGGTGG+AGG + chr8_2:53012426-53012445 Msa1254800:CDS 45.0%
CATTCATGCAGTAAGCATGC+CGG + chr8_2:53012649-53012668 Msa1254800:intron 45.0%
AGTAAGCATGCCGGTAACAT+TGG + chr8_2:53012658-53012677 Msa1254800:intron 45.0%
!! ATTTTCAGGAAGTCCACGTG+TGG + chr8_2:53012820-53012839 Msa1254800:intron 45.0%
!! ACTCCTGTTACTCTAGAGCT+AGG + chr8_2:53012878-53012897 Msa1254800:CDS 45.0%
CTGCTACAATTGTGGTCACA+TGG + chr8_2:53013039-53013058 Msa1254800:intron 45.0%
GCTGCTTCAATAGTTCATGG+TGG + chr8_2:53013528-53013547 Msa1254800:CDS 45.0%
AAGCCCAAAATTTAGAGGCG+TGG - chr8_2:53013725-53013744 None:intergenic 45.0%
ACAGTGATCACTGGAAGTAG+TGG - chr8_2:53014126-53014145 None:intergenic 45.0%
CTGATACTCACAGTGATCAC+TGG - chr8_2:53014135-53014154 None:intergenic 45.0%
! ACGGAGGGAGTATAAAGGAT+GGG + chr8_2:53014681-53014700 Msa1254800:intron 45.0%
GGAGTATAAAGGATGGGAAC+TGG + chr8_2:53014687-53014706 Msa1254800:intron 45.0%
! AGAAATGCTAATTGGTGCCC+CGG - chr8_2:53014818-53014837 None:intergenic 45.0%
! ACACTACCATTTGGAGGTGT+TGG + chr8_2:53014991-53015010 Msa1254800:CDS 45.0%
!! GTGTTGGTCAGAGTGGTTTT+GGG + chr8_2:53015007-53015026 Msa1254800:CDS 45.0%
TTACTCCAAGGAGGATACCT+TGG - chr8_2:53015114-53015133 None:intergenic 45.0%
TCAGTCTGTATGCCAATCTG+AGG - chr8_2:53015152-53015171 None:intergenic 45.0%
! AAGGCGTCTGAAAATACGGT+GGG - chr8_2:53015342-53015361 None:intergenic 45.0%
!! AAAGGCGTCTGAAAATACGG+TGG - chr8_2:53015343-53015362 None:intergenic 45.0%
!! AAAATATAATAAAAAGAAAA+AGG - chr8_2:53010054-53010073 None:intergenic 5.0%
!! TAACAAAAAATAAAATAAAA+GGG - chr8_2:53010263-53010282 None:intergenic 5.0%
!! ATAACAAAAAATAAAATAAA+AGG - chr8_2:53010264-53010283 None:intergenic 5.0%
!!! AATTTTTTTATAATAATAAC+CGG + chr8_2:53011530-53011549 Msa1254800:intron 5.0%
CAGGATGCTTCCCAAGATCT+TGG - chr8_2:53009867-53009886 None:intergenic 50.0%
TGGATGGCTCCTAAGAAGGT+AGG + chr8_2:53010207-53010226 Msa1254800:intron 50.0%
! GGCAGTAACTCTCCTTTTGC+TGG - chr8_2:53010499-53010518 None:intergenic 50.0%
GAGTTACTGCCAGAACCACT+TGG + chr8_2:53010508-53010527 Msa1254800:CDS 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_2:53010803-53010822 Msa1254800:intron 50.0%
GTTTGGGAGTTTGGAGGGAA+AGG + chr8_2:53010809-53010828 Msa1254800:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG - chr8_2:53011015-53011034 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+GGG + chr8_2:53011039-53011058 Msa1254800:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr8_2:53010803-53010822 None:intergenic 50.0%
GACAAAGTGAGTACACCCTC+CGG + chr8_2:53011584-53011603 Msa1254800:intron 50.0%
!! GTTTTGGCCCCCTAAGTATC+AGG + chr8_2:53011824-53011843 Msa1254800:intron 50.0%
TGGGGGCCAAAACTGCAAAA+GGG - chr8_2:53011908-53011927 None:intergenic 50.0%
GCCATAAAGGTCATTGAGGG+TGG + chr8_2:53012423-53012442 Msa1254800:CDS 50.0%
ATGACTATGCTTGCCACACG+TGG - chr8_2:53012836-53012855 None:intergenic 50.0%
!! CCACCTAGCTCTAGAGTAAC+AGG - chr8_2:53012884-53012903 None:intergenic 50.0%
!! CCTGTTACTCTAGAGCTAGG+TGG + chr8_2:53012881-53012900 Msa1254800:CDS 50.0%
TGACGTCGTGACCACAATTG+TGG - chr8_2:53013004-53013023 None:intergenic 50.0%
GCAAAGTGGGGAGTTTGTAG+TGG + chr8_2:53013222-53013241 Msa1254800:CDS 50.0%
ATGGGTCATCTATTGCGGGA+CGG - chr8_2:53014447-53014466 None:intergenic 50.0%
! ATGGGACGGAGGGAGTATAA+AGG + chr8_2:53014676-53014695 Msa1254800:intron 50.0%
! GACGGAGGGAGTATAAAGGA+TGG + chr8_2:53014680-53014699 Msa1254800:intron 50.0%
TTGCTTCCTTAACCCGTGTC+CGG + chr8_2:53014796-53014815 Msa1254800:intron 50.0%
CTCTGACCAACACCTCCAAA+TGG - chr8_2:53015000-53015019 None:intergenic 50.0%
!! TTTGGAGGTGTTGGTCAGAG+TGG + chr8_2:53015000-53015019 Msa1254800:CDS 50.0%
!!! GGTGTTGGTCAGAGTGGTTT+TGG + chr8_2:53015006-53015025 Msa1254800:CDS 50.0%
!!! TTGGTCAGAGTGGTTTTGGG+AGG + chr8_2:53015010-53015029 Msa1254800:CDS 50.0%
!!! AGTGGTTTTGGGAGGTACCA+TGG + chr8_2:53015018-53015037 Msa1254800:CDS 50.0%
!!! GTGGTTTTGGGAGGTACCAT+GGG + chr8_2:53015019-53015038 Msa1254800:CDS 50.0%
! TTGAGCCAAGGTATCCTCCT+TGG + chr8_2:53015106-53015125 Msa1254800:CDS 50.0%
! TTTTCAGACGCCTTTCACCG+TGG + chr8_2:53015348-53015367 Msa1254800:three_prime_UTR 50.0%
GGAGTTTGGAGGGAAAGGGA+GGG + chr8_2:53010814-53010833 Msa1254800:intron 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr8_2:53010815-53010834 Msa1254800:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG - chr8_2:53011003-53011022 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG - chr8_2:53011004-53011023 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG - chr8_2:53011013-53011032 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG - chr8_2:53011014-53011033 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG - chr8_2:53011094-53011113 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr8_2:53011170-53011189 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr8_2:53011171-53011190 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr8_2:53011172-53011191 None:intergenic 55.0%
GCGGTAACAAGTACACCCTC+CGG - chr8_2:53011737-53011756 None:intergenic 55.0%
GGGGGCCAAAACTGCAAAAG+GGG - chr8_2:53011907-53011926 None:intergenic 55.0%
CTGGGGGCCAAAACTGCAAA+AGG - chr8_2:53011909-53011928 None:intergenic 55.0%
! CATGCTGGAGCTTGCTCTGA+TGG - chr8_2:53012357-53012376 None:intergenic 55.0%
TGCTTCCTTAACCCGTGTCC+GGG + chr8_2:53014797-53014816 Msa1254800:intron 55.0%
GGGAGTTTGGAGGGAAAGGG+AGG + chr8_2:53010813-53010832 Msa1254800:intron 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG + chr8_2:53010818-53010837 Msa1254800:intron 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG + chr8_2:53010819-53010838 Msa1254800:intron 60.0%
GAAAGGGAGGGGAGGGCTTT+GGG + chr8_2:53010826-53010845 Msa1254800:intron 60.0%
AAAGGGAGGGGAGGGCTTTG+GGG + chr8_2:53010827-53010846 Msa1254800:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG - chr8_2:53011007-53011026 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - chr8_2:53011091-53011110 None:intergenic 60.0%
AGGGGCAGTACTTAAGGGGC+TGG - chr8_2:53011889-53011908 None:intergenic 60.0%
GCTTCCTTAACCCGTGTCCG+GGG + chr8_2:53014798-53014817 Msa1254800:intron 60.0%
! CTAATTGGTGCCCCGGACAC+GGG - chr8_2:53014811-53014830 None:intergenic 60.0%
! GCTAATTGGTGCCCCGGACA+CGG - chr8_2:53014812-53014831 None:intergenic 60.0%
GGAAAGGGAGGGGAGGGCTT+TGG + chr8_2:53010825-53010844 Msa1254800:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr8_2:53010828-53010847 Msa1254800:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr8_2:53011165-53011184 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr8_2:53011166-53011185 None:intergenic 65.0%
GCGCGAGATTGCTGACCGCA+AGG - chr8_2:53012630-53012649 None:intergenic 65.0%
!! GAGGGGAGGGCTTTGGGGGT+TGG + chr8_2:53010832-53010851 Msa1254800:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - chr8_2:53011150-53011169 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr8_2:53011161-53011180 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - chr8_2:53011162-53011181 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr8_2:53011167-53011186 None:intergenic 70.0%
! GGTGCCCCGGACACGGGTTA+AGG - chr8_2:53014805-53014824 None:intergenic 70.0%
TGGAGGGGAGGGGAGGGGAG+GGG - chr8_2:53011160-53011179 None:intergenic 75.0%
! GGGGAGGGGAGGGGAGGGGA+GGG - chr8_2:53011156-53011175 None:intergenic 80.0%
! AGGGGAGGGGAGGGGAGGGG+AGG - chr8_2:53011157-53011176 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53009648 53015466 53009648 ID=Msa1254800;Name=Msa1254800
chr8_2 mRNA 53009648 53015466 53009648 ID=Msa1254800-mRNA-1;Parent=Msa1254800;Name=Msa1254800-mRNA-1;_AED=0.15;_eAED=0.15;_QI=58|1|1|1|1|1|10|233|490
chr8_2 exon 53009648 53009906 53009648 ID=Msa1254800-mRNA-1:exon:16368;Parent=Msa1254800-mRNA-1
chr8_2 exon 53010156 53010224 53010156 ID=Msa1254800-mRNA-1:exon:16369;Parent=Msa1254800-mRNA-1
chr8_2 exon 53010472 53010568 53010472 ID=Msa1254800-mRNA-1:exon:16370;Parent=Msa1254800-mRNA-1
chr8_2 exon 53012295 53012501 53012295 ID=Msa1254800-mRNA-1:exon:16371;Parent=Msa1254800-mRNA-1
chr8_2 exon 53012828 53012952 53012828 ID=Msa1254800-mRNA-1:exon:16372;Parent=Msa1254800-mRNA-1
chr8_2 exon 53013198 53013302 53013198 ID=Msa1254800-mRNA-1:exon:16373;Parent=Msa1254800-mRNA-1
chr8_2 exon 53013399 53013571 53013399 ID=Msa1254800-mRNA-1:exon:16374;Parent=Msa1254800-mRNA-1
chr8_2 exon 53014053 53014143 53014053 ID=Msa1254800-mRNA-1:exon:16375;Parent=Msa1254800-mRNA-1
chr8_2 exon 53014232 53014381 53014232 ID=Msa1254800-mRNA-1:exon:16376;Parent=Msa1254800-mRNA-1
chr8_2 exon 53014979 53015466 53014979 ID=Msa1254800-mRNA-1:exon:16377;Parent=Msa1254800-mRNA-1
chr8_2 five_prime_UTR 53009648 53009705 53009648 ID=Msa1254800-mRNA-1:five_prime_utr;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53009706 53009906 53009706 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53010156 53010224 53010156 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53010472 53010568 53010472 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53012295 53012501 53012295 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53012828 53012952 53012828 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53013198 53013302 53013198 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53013399 53013571 53013399 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53014053 53014143 53014053 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53014232 53014381 53014232 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 CDS 53014979 53015233 53014979 ID=Msa1254800-mRNA-1:cds;Parent=Msa1254800-mRNA-1
chr8_2 three_prime_UTR 53015234 53015466 53015234 ID=Msa1254800-mRNA-1:three_prime_utr;Parent=Msa1254800-mRNA-1
Gene Sequence

>Msa1254800

ATGAACAACATTGGTGTGGAAGTAGAAGAAACTGTAAGAGATTTGAGACAGTACTTCAAAACAGGAAAAACAAGAAGTGTTACATGGAGAAAAAACCAGCTCAAAGCTCTACTTAACCTAATTCATGAAAATGAAGATGCTATATCTAAAGCTCTTTACCAAGATCTTGGGAAGCATCCTGTTGAAGCTTACCGTGATGAGATTGGAGGGGTAGAAAAATCAGCACAAAACTCTTTGGACTGTGTTGAAAAATGGATGGCTCCTAAGAAGAGCAATATTCCTCTGCTTTTCTTCCCAGCAAAAGGAGAGTTACTGCCAGAACCACTTGGTGTAGTTCTCATTTTTTCTTCTTGGAACTTTCCAATCATGTTGGCATTGGATCCAATAATTGGGGCAGTATCTGCTGGAAATGTTGTAGTTATAAAACCATCAGAGCAAGCTCCAGCATGCTCTTCATTTCTTGCCAATATCCTTCCTCAGTACTTAGACACTAATGCCATAAAGGTCATTGAGGGTGGAGGAGATGTCTGTGAACAACTACTGCTACAAAAATGGGACAAAATATTTTTCACTGGAAGTCCACGTGTGGCAAGCATAGTCATGTCTTCTGCTGCAAGAAATTTAACTCCTGTTACTCTAGAGCTAGGTGGAAAATGCCCTACTATATTTGATGATCTTTCAAATCCTTCAGATTTTAAGATGGCAGTGAAAAGAATAGTAGGAGCAAAGTGGGGAGTTTGTAGTGGACAAGCATGTATAGGAATCGATTATTTGCTTGTTGAGGAGAAGTACTCATCTGAATTGATAGAACTATTAAAGAAGTTCATGAGAAAATTTTATGGTGACAACATGATGGAGTCAAAGACACTCTCAAGAATAATAAATAAGAACCACTTTGAGAGATTGTGCAATCTTCTTAAAGACCCTCTAGTTGCTGCTTCAATAGTTCATGGTGGTTCAGTTGATGAAACAAACCTGTTTATTGAGCCTACAATATTGTTAGATCCACCACTAGATGCTGAAATCATGACGGAAGAAATCTTTGGTCCACTACTTCCAGTGATCACTGTGAATAAAATTCAGGAAAGTATTGAATTTATAAACTCAAGGCCAAAACCTCTTGCAATTTATGCATTCACCAAAGATGCAACTTTCAAGAAAAAGATTGTATCAGAAACTTCCTCAGGAAGTGTCATATTTAATGACACACTAGTTCAATTTTTATGTGATACACTACCATTTGGAGGTGTTGGTCAGAGTGGTTTTGGGAGGTACCATGGGAAATACTCGTTTGACACATTCAGCCATGAAAAAGCTGTATTGCATAGACACCTTTGCCTTGAAATTGAGCCAAGGTATCCTCCTTGGAGTAAGTTCAAGTTAGAATTCCTCAGATTGGCATACAGACTGAATTACTTTGGACTAGTGCTACATATGGTGCTACATATGTTAGGATTGAAAAAACACAACTAG

Protein sequence

>Msa1254800

MNNIGVEVEETVRDLRQYFKTGKTRSVTWRKNQLKALLNLIHENEDAISKALYQDLGKHPVEAYRDEIGGVEKSAQNSLDCVEKWMAPKKSNIPLLFFPAKGELLPEPLGVVLIFSSWNFPIMLALDPIIGAVSAGNVVVIKPSEQAPACSSFLANILPQYLDTNAIKVIEGGGDVCEQLLLQKWDKIFFTGSPRVASIVMSSAARNLTPVTLELGGKCPTIFDDLSNPSDFKMAVKRIVGAKWGVCSGQACIGIDYLLVEEKYSSELIELLKKFMRKFYGDNMMESKTLSRIINKNHFERLCNLLKDPLVAASIVHGGSVDETNLFIEPTILLDPPLDAEIMTEEIFGPLLPVITVNKIQESIEFINSRPKPLAIYAFTKDATFKKKIVSETSSGSVIFNDTLVQFLCDTLPFGGVGQSGFGRYHGKYSFDTFSHEKAVLHRHLCLEIEPRYPPWSKFKLEFLRLAYRLNYFGLVLHMVLHMLGLKKHN*