Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214890 | XP_027348046.1 | 56.818 | 88 | 27 | 2 | 18 | 98 | 175 | 258 | 1.13e-20 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214890 | sp|P49046|LEGU_CANEN | 48.889 | 90 | 35 | 2 | 16 | 98 | 174 | 259 | 5.16e-20 | 86.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214890 | A0A3Q7Y8Y5 | 50.000 | 96 | 37 | 2 | 16 | 104 | 70 | 161 | 2.36e-20 | 89.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214880 | Msa0214890 | 0.836265 | 1.035243e-56 | -8.615850e-47 |
| Msa0214890 | Msa0227480 | 0.801714 | 7.904739e-49 | -8.615850e-47 |
| Msa0214890 | Msa0267000 | 0.805873 | 1.081808e-49 | -8.615850e-47 |
| Msa0214890 | Msa0267010 | 0.803736 | 3.023843e-49 | -8.615850e-47 |
| Msa0214890 | Msa0414420 | 0.804416 | 2.183111e-49 | -8.615850e-47 |
| Msa0214890 | Msa0452900 | 0.810164 | 1.320425e-50 | -8.615850e-47 |
| Msa0214890 | Msa0743810 | 0.823705 | 1.199685e-53 | -8.615850e-47 |
| Msa0214890 | Msa0808010 | 0.814181 | 1.755912e-51 | -8.615850e-47 |
| Msa0214890 | Msa0808020 | 0.817251 | 3.634101e-52 | -8.615850e-47 |
| Msa0214890 | Msa1016280 | 0.801142 | 1.035380e-48 | -8.615850e-47 |
| Msa0214890 | Msa1025370 | 0.816714 | 4.795856e-52 | -8.615850e-47 |
| Msa0214890 | Msa1044830 | 0.820030 | 8.505033e-53 | -8.615850e-47 |
| Msa0214890 | Msa1270230 | 0.804158 | 2.471013e-49 | -8.615850e-47 |
| Msa0214890 | Msa1287800 | 0.819346 | 1.218587e-52 | -8.615850e-47 |
| Msa0214890 | Msa1287810 | 0.819906 | 9.079566e-53 | -8.615850e-47 |
| Msa0214890 | Msa1289430 | 0.804706 | 1.899380e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214890 | MtrunA17_Chr7g0248651 | 52.273 | 88 | 31 | 2 | 18 | 98 | 183 | 266 | 3.92e-20 | 83.6 |
| Msa0214890 | MtrunA17_Chr4g0056561 | 47.191 | 89 | 36 | 2 | 17 | 98 | 194 | 278 | 7.18e-20 | 82.8 |
| Msa0214890 | MtrunA17_Chr3g0135491 | 45.455 | 88 | 37 | 2 | 18 | 98 | 185 | 268 | 8.53e-20 | 82.8 |
| Msa0214890 | MtrunA17_Chr7g0246051 | 47.826 | 92 | 37 | 2 | 18 | 102 | 182 | 269 | 9.05e-20 | 80.9 |
| Msa0214890 | MtrunA17_Chr7g0226431 | 55.385 | 65 | 22 | 1 | 43 | 100 | 1 | 65 | 3.03e-18 | 72.8 |
| Msa0214890 | MtrunA17_Chr1g0151801 | 48.864 | 88 | 34 | 2 | 18 | 98 | 194 | 277 | 1.45e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214890 | AT1G62710.1 | 51.136 | 88 | 32 | 2 | 18 | 98 | 187 | 270 | 1.60e-20 | 85.1 |
| Msa0214890 | AT2G25940.1 | 45.455 | 88 | 37 | 2 | 18 | 98 | 180 | 263 | 4.18e-19 | 81.3 |
| Msa0214890 | AT4G32940.1 | 45.455 | 88 | 37 | 2 | 18 | 98 | 195 | 278 | 4.25e-16 | 72.8 |
Find 19 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGATGCCTCATTTAA+TGG | 0.198433 | 2_1:+59515660 | Msa0214890:CDS |
| TGGAAGATATGTATGGTTTA+AGG | 0.240553 | 2_1:+59516636 | Msa0214890:CDS |
| TACGTGGAAGCATCTGAATT+TGG | 0.290947 | 2_1:+59516473 | Msa0214890:CDS |
| AGATGAGTACCGTACTTGTT+TGG | 0.336013 | 2_1:+59516589 | Msa0214890:CDS |
| GAGATATGTACAACATTTCA+TGG | 0.362056 | 2_1:+59516612 | Msa0214890:CDS |
| GATGAGTACCGTACTTGTTT+GGG | 0.371503 | 2_1:+59516590 | Msa0214890:CDS |
| ACGTGGAAGCATCTGAATTT+GGG | 0.398162 | 2_1:+59516474 | Msa0214890:CDS |
| AGCATCTGAATTTGGGAGCT+TGG | 0.413096 | 2_1:+59516481 | Msa0214890:CDS |
| TGATATCGTAAATACCTTGA+AGG | 0.453064 | 2_1:+59515686 | Msa0214890:CDS |
| CTCACTTGCATTTGAAGTTG+TGG | 0.455708 | 2_1:-59516543 | None:intergenic |
| TCATGGATGGAAGATATGTA+TGG | 0.471518 | 2_1:+59516629 | Msa0214890:CDS |
| GAATTTGGGAGCTTGGTTGA+AGG | 0.483511 | 2_1:+59516488 | Msa0214890:CDS |
| GGACACAAATAAGTCCTTCA+AGG | 0.492217 | 2_1:-59515700 | None:intergenic |
| AATTTGGGAGCTTGGTTGAA+GGG | 0.520073 | 2_1:+59516489 | Msa0214890:CDS |
| GTTGAAGGGATGCGTCCAAA+TGG | 0.528644 | 2_1:+59516503 | Msa0214890:CDS |
| GATATCAATGCCATTAAATG+AGG | 0.550622 | 2_1:-59515670 | None:intergenic |
| TATGTACAACATTTCATGGA+TGG | 0.558622 | 2_1:+59516616 | Msa0214890:CDS |
| ACATATCTCCCAAACAAGTA+CGG | 0.605749 | 2_1:-59516598 | None:intergenic |
| ACATGAAAAGGTGATATACG+TGG | 0.694213 | 2_1:+59516457 | Msa0214890:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATATTATATGTTTTG+AGG | - | chr2_1:59514758-59514777 | None:intergenic | 10.0% |
| !! | AAAATATAGCAAATTTAATT+AGG | + | chr2_1:59515393-59515412 | Msa0214890:intron | 10.0% |
| !! | ATGTAATAATATACTTAAAT+AGG | + | chr2_1:59514698-59514717 | Msa0214890:intron | 10.0% |
| !! | TGTAATAATATACTTAAATA+GGG | + | chr2_1:59514699-59514718 | Msa0214890:intron | 10.0% |
| !! | GGAATAAAATATTATAATAT+TGG | + | chr2_1:59516123-59516142 | Msa0214890:intron | 10.0% |
| !!! | TAATAATATTATATGTTTTG+AGG | - | chr2_1:59514758-59514777 | None:intergenic | 10.0% |
| !! | AAAATATAGCAAATTTAATT+AGG | + | chr2_1:59515393-59515412 | Msa0214890:intron | 10.0% |
| !! | ATGTAATAATATACTTAAAT+AGG | + | chr2_1:59514698-59514717 | Msa0214890:intron | 10.0% |
| !! | TGTAATAATATACTTAAATA+GGG | + | chr2_1:59514699-59514718 | Msa0214890:intron | 10.0% |
| !! | GGAATAAAATATTATAATAT+TGG | + | chr2_1:59516123-59516142 | Msa0214890:intron | 10.0% |
| !!! | ACTATTTTTACTATGAATAA+TGG | + | chr2_1:59514904-59514923 | Msa0214890:intron | 15.0% |
| !! | TTGTTCTTTAAATTTGATAT+CGG | + | chr2_1:59515325-59515344 | Msa0214890:intron | 15.0% |
| !!! | TAATAATGTTATATGTTTTG+AGG | - | chr2_1:59515580-59515599 | None:intergenic | 15.0% |
| !!! | TAACTATTTTGTATGAATTA+TGG | + | chr2_1:59515752-59515771 | Msa0214890:intron | 15.0% |
| !!! | AGTATATTTAAAATAGAGTT+GGG | - | chr2_1:59515902-59515921 | None:intergenic | 15.0% |
| !!! | CATTACATATGATTTTTTAT+TGG | - | chr2_1:59515929-59515948 | None:intergenic | 15.0% |
| !!! | GCATTTGAATTATTTTAAAA+CGG | + | chr2_1:59516045-59516064 | Msa0214890:intron | 15.0% |
| !! | TTATATTTATTCGACAATAT+TGG | + | chr2_1:59516102-59516121 | Msa0214890:intron | 15.0% |
| !! | TTTATACTTAAATAAATAGG+TGG | - | chr2_1:59516183-59516202 | None:intergenic | 15.0% |
| !! | TGGTTTATACTTAAATAAAT+AGG | - | chr2_1:59516186-59516205 | None:intergenic | 15.0% |
| !! | AATGAAATACATAAATATTG+AGG | - | chr2_1:59516432-59516451 | None:intergenic | 15.0% |
| !!! | ACTATTTTTACTATGAATAA+TGG | + | chr2_1:59514904-59514923 | Msa0214890:intron | 15.0% |
| !! | TTGTTCTTTAAATTTGATAT+CGG | + | chr2_1:59515325-59515344 | Msa0214890:intron | 15.0% |
| !!! | TAATAATGTTATATGTTTTG+AGG | - | chr2_1:59515580-59515599 | None:intergenic | 15.0% |
| !!! | TAACTATTTTGTATGAATTA+TGG | + | chr2_1:59515752-59515771 | Msa0214890:intron | 15.0% |
| !!! | AGTATATTTAAAATAGAGTT+GGG | - | chr2_1:59515902-59515921 | None:intergenic | 15.0% |
| !!! | CATTACATATGATTTTTTAT+TGG | - | chr2_1:59515929-59515948 | None:intergenic | 15.0% |
| !!! | GCATTTGAATTATTTTAAAA+CGG | + | chr2_1:59516045-59516064 | Msa0214890:intron | 15.0% |
| !! | TTATATTTATTCGACAATAT+TGG | + | chr2_1:59516102-59516121 | Msa0214890:intron | 15.0% |
| !! | TTTATACTTAAATAAATAGG+TGG | - | chr2_1:59516183-59516202 | None:intergenic | 15.0% |
| !! | TGGTTTATACTTAAATAAAT+AGG | - | chr2_1:59516186-59516205 | None:intergenic | 15.0% |
| !! | AATGAAATACATAAATATTG+AGG | - | chr2_1:59516432-59516451 | None:intergenic | 15.0% |
| !! | TATTTGGCAATATTTACTAT+AGG | - | chr2_1:59514968-59514987 | None:intergenic | 20.0% |
| !!! | AGACTATTTAAAATAGAGTT+GGG | - | chr2_1:59515054-59515073 | None:intergenic | 20.0% |
| !!! | CACTACATATCTTTTTTTAT+TGG | - | chr2_1:59515081-59515100 | None:intergenic | 20.0% |
| !! | AAAGATATGTAGTGAATATA+TGG | + | chr2_1:59515087-59515106 | Msa0214890:intron | 20.0% |
| !!! | ATCTTTGAAATTACTAACAT+AGG | + | chr2_1:59515360-59515379 | Msa0214890:intron | 20.0% |
| !! | TAAAGTTATTATGTTTGATC+AGG | + | chr2_1:59515633-59515652 | Msa0214890:intron | 20.0% |
| !!! | GAGTATATTTAAAATAGAGT+TGG | - | chr2_1:59515903-59515922 | None:intergenic | 20.0% |
| !! | TAAGTATAAACCATGTAAAT+TGG | + | chr2_1:59516193-59516212 | Msa0214890:intron | 20.0% |
| !! | TATTTGGCAATATTTACTAT+AGG | - | chr2_1:59514968-59514987 | None:intergenic | 20.0% |
| !!! | AGACTATTTAAAATAGAGTT+GGG | - | chr2_1:59515054-59515073 | None:intergenic | 20.0% |
| !!! | CACTACATATCTTTTTTTAT+TGG | - | chr2_1:59515081-59515100 | None:intergenic | 20.0% |
| !! | AAAGATATGTAGTGAATATA+TGG | + | chr2_1:59515087-59515106 | Msa0214890:intron | 20.0% |
| !!! | ATCTTTGAAATTACTAACAT+AGG | + | chr2_1:59515360-59515379 | Msa0214890:intron | 20.0% |
| !! | TAAAGTTATTATGTTTGATC+AGG | + | chr2_1:59515633-59515652 | Msa0214890:intron | 20.0% |
| !!! | GAGTATATTTAAAATAGAGT+TGG | - | chr2_1:59515903-59515922 | None:intergenic | 20.0% |
| !! | TAAGTATAAACCATGTAAAT+TGG | + | chr2_1:59516193-59516212 | Msa0214890:intron | 20.0% |
| ! | TAAAGTTATTGTGTTTGATC+AGG | + | chr2_1:59514783-59514802 | Msa0214890:intron | 25.0% |
| ! | TACGAAGTTTGTAGTTTATT+TGG | - | chr2_1:59514984-59515003 | None:intergenic | 25.0% |
| !! | GAGACTATTTAAAATAGAGT+TGG | - | chr2_1:59515055-59515074 | None:intergenic | 25.0% |
| ! | ATTTATTCAAATGAATGCAC+AGG | + | chr2_1:59515259-59515278 | Msa0214890:intron | 25.0% |
| ! | AGCAAATTTAATTAGGATGA+CGG | + | chr2_1:59515400-59515419 | Msa0214890:intron | 25.0% |
| !! | TACCATCTTTTTGTATGATT+TGG | - | chr2_1:59515724-59515743 | None:intergenic | 25.0% |
| ! | TGTTTGGCAATATTTACTAT+AGG | - | chr2_1:59515816-59515835 | None:intergenic | 25.0% |
| !!! | TATGAAGTTTGTAGTTTGTT+TGG | - | chr2_1:59515832-59515851 | None:intergenic | 25.0% |
| !! | TGTATTTTATAGACCAAAGT+TGG | + | chr2_1:59516000-59516019 | Msa0214890:intron | 25.0% |
| !!! | ATTATTTTAAAACGGATCCT+TGG | + | chr2_1:59516053-59516072 | Msa0214890:intron | 25.0% |
| ! | AACAATAAGACCAATTTACA+TGG | - | chr2_1:59516206-59516225 | None:intergenic | 25.0% |
| !!! | CTTTAACTTGTCTTTGATAT+TGG | + | chr2_1:59516338-59516357 | Msa0214890:intron | 25.0% |
| !! | TTTCATTTGATGACATGAAA+AGG | + | chr2_1:59516445-59516464 | Msa0214890:intron | 25.0% |
| !! | ACGTAGATTTTTATACCATT+TGG | - | chr2_1:59516521-59516540 | None:intergenic | 25.0% |
| ! | TAAAGTTATTGTGTTTGATC+AGG | + | chr2_1:59514783-59514802 | Msa0214890:intron | 25.0% |
| ! | TACGAAGTTTGTAGTTTATT+TGG | - | chr2_1:59514984-59515003 | None:intergenic | 25.0% |
| !! | GAGACTATTTAAAATAGAGT+TGG | - | chr2_1:59515055-59515074 | None:intergenic | 25.0% |
| ! | ATTTATTCAAATGAATGCAC+AGG | + | chr2_1:59515259-59515278 | Msa0214890:intron | 25.0% |
| ! | AGCAAATTTAATTAGGATGA+CGG | + | chr2_1:59515400-59515419 | Msa0214890:intron | 25.0% |
| !! | TACCATCTTTTTGTATGATT+TGG | - | chr2_1:59515724-59515743 | None:intergenic | 25.0% |
| ! | TGTTTGGCAATATTTACTAT+AGG | - | chr2_1:59515816-59515835 | None:intergenic | 25.0% |
| !!! | TATGAAGTTTGTAGTTTGTT+TGG | - | chr2_1:59515832-59515851 | None:intergenic | 25.0% |
| !! | TGTATTTTATAGACCAAAGT+TGG | + | chr2_1:59516000-59516019 | Msa0214890:intron | 25.0% |
| !!! | ATTATTTTAAAACGGATCCT+TGG | + | chr2_1:59516053-59516072 | Msa0214890:intron | 25.0% |
| ! | AACAATAAGACCAATTTACA+TGG | - | chr2_1:59516206-59516225 | None:intergenic | 25.0% |
| !!! | CTTTAACTTGTCTTTGATAT+TGG | + | chr2_1:59516338-59516357 | Msa0214890:intron | 25.0% |
| !! | TTTCATTTGATGACATGAAA+AGG | + | chr2_1:59516445-59516464 | Msa0214890:intron | 25.0% |
| !! | ACGTAGATTTTTATACCATT+TGG | - | chr2_1:59516521-59516540 | None:intergenic | 25.0% |
| GATATCAATGCCATTAAATG+AGG | - | chr2_1:59514823-59514842 | None:intergenic | 30.0% | |
| GGACACAAATAAGTCATTTA+TGG | - | chr2_1:59514853-59514872 | None:intergenic | 30.0% | |
| GTCCAAATCATACAAAAAGA+TGG | + | chr2_1:59514869-59514888 | Msa0214890:intron | 30.0% | |
| ! | CACCATCTTTTTGTATGATT+TGG | - | chr2_1:59514874-59514893 | None:intergenic | 30.0% |
| GTTAGTCAATCAAAGACAAT+TGG | + | chr2_1:59515024-59515043 | Msa0214890:intron | 30.0% | |
| TGTACTTTATAGACCAAAGT+TGG | + | chr2_1:59515152-59515171 | Msa0214890:intron | 30.0% | |
| !! | TTTATAGACCAAAGTTGGTA+AGG | + | chr2_1:59515157-59515176 | Msa0214890:intron | 30.0% |
| !! | TTATAGACCAAAGTTGGTAA+GGG | + | chr2_1:59515158-59515177 | Msa0214890:intron | 30.0% |
| AATAAAAGTTGACGTCACTA+AGG | - | chr2_1:59515225-59515244 | None:intergenic | 30.0% | |
| GATATCAATGCCATTAAATG+AGG | - | chr2_1:59514823-59514842 | None:intergenic | 30.0% | |
| TGATATCGTAAATACCTTGA+AGG | + | chr2_1:59515686-59515705 | Msa0214890:CDS | 30.0% | |
| GTCCAAATCATACAAAAAGA+TGG | + | chr2_1:59514869-59514888 | Msa0214890:intron | 30.0% | |
| GTTAGTCAATCAAAGATGAT+TGG | + | chr2_1:59515872-59515891 | Msa0214890:intron | 30.0% | |
| !! | TTTATAGACCAAAGTTGGTA+AGG | + | chr2_1:59515157-59515176 | Msa0214890:intron | 30.0% |
| !! | TTATAGACCAAAGTTGGTAA+GGG | + | chr2_1:59515158-59515177 | Msa0214890:intron | 30.0% |
| !!! | ATTAACATTGCTGTCGATTT+TGG | - | chr2_1:59516160-59516179 | None:intergenic | 30.0% |
| TATATATGCCAGAAAGAATG+TGG | + | chr2_1:59516237-59516256 | Msa0214890:intron | 30.0% | |
| ATATATGCCAGAAAGAATGT+GGG | + | chr2_1:59516238-59516257 | Msa0214890:intron | 30.0% | |
| AAAGAATGTGGGTTCAAATT+TGG | + | chr2_1:59516249-59516268 | Msa0214890:intron | 30.0% | |
| GAGATATGTACAACATTTCA+TGG | + | chr2_1:59516612-59516631 | Msa0214890:CDS | 30.0% | |
| TATGTACAACATTTCATGGA+TGG | + | chr2_1:59516616-59516635 | Msa0214890:CDS | 30.0% | |
| TGGAAGATATGTATGGTTTA+AGG | + | chr2_1:59516636-59516655 | Msa0214890:CDS | 30.0% | |
| GATATCAATGCCATTAAATG+AGG | - | chr2_1:59514823-59514842 | None:intergenic | 30.0% | |
| GGACACAAATAAGTCATTTA+TGG | - | chr2_1:59514853-59514872 | None:intergenic | 30.0% | |
| GTCCAAATCATACAAAAAGA+TGG | + | chr2_1:59514869-59514888 | Msa0214890:intron | 30.0% | |
| ! | CACCATCTTTTTGTATGATT+TGG | - | chr2_1:59514874-59514893 | None:intergenic | 30.0% |
| GTTAGTCAATCAAAGACAAT+TGG | + | chr2_1:59515024-59515043 | Msa0214890:intron | 30.0% | |
| TGTACTTTATAGACCAAAGT+TGG | + | chr2_1:59515152-59515171 | Msa0214890:intron | 30.0% | |
| !! | TTTATAGACCAAAGTTGGTA+AGG | + | chr2_1:59515157-59515176 | Msa0214890:intron | 30.0% |
| !! | TTATAGACCAAAGTTGGTAA+GGG | + | chr2_1:59515158-59515177 | Msa0214890:intron | 30.0% |
| AATAAAAGTTGACGTCACTA+AGG | - | chr2_1:59515225-59515244 | None:intergenic | 30.0% | |
| GATATCAATGCCATTAAATG+AGG | - | chr2_1:59514823-59514842 | None:intergenic | 30.0% | |
| TGATATCGTAAATACCTTGA+AGG | + | chr2_1:59515686-59515705 | Msa0214890:CDS | 30.0% | |
| GTCCAAATCATACAAAAAGA+TGG | + | chr2_1:59514869-59514888 | Msa0214890:intron | 30.0% | |
| GTTAGTCAATCAAAGATGAT+TGG | + | chr2_1:59515872-59515891 | Msa0214890:intron | 30.0% | |
| !! | TTTATAGACCAAAGTTGGTA+AGG | + | chr2_1:59515157-59515176 | Msa0214890:intron | 30.0% |
| !! | TTATAGACCAAAGTTGGTAA+GGG | + | chr2_1:59515158-59515177 | Msa0214890:intron | 30.0% |
| !!! | ATTAACATTGCTGTCGATTT+TGG | - | chr2_1:59516160-59516179 | None:intergenic | 30.0% |
| TATATATGCCAGAAAGAATG+TGG | + | chr2_1:59516237-59516256 | Msa0214890:intron | 30.0% | |
| ATATATGCCAGAAAGAATGT+GGG | + | chr2_1:59516238-59516257 | Msa0214890:intron | 30.0% | |
| AAAGAATGTGGGTTCAAATT+TGG | + | chr2_1:59516249-59516268 | Msa0214890:intron | 30.0% | |
| GAGATATGTACAACATTTCA+TGG | + | chr2_1:59516612-59516631 | Msa0214890:CDS | 30.0% | |
| TATGTACAACATTTCATGGA+TGG | + | chr2_1:59516616-59516635 | Msa0214890:CDS | 30.0% | |
| TGGAAGATATGTATGGTTTA+AGG | + | chr2_1:59516636-59516655 | Msa0214890:CDS | 30.0% | |
| ! | CCATTAAATGAGGCATCATT+TGG | - | chr2_1:59514813-59514832 | None:intergenic | 35.0% |
| CCAAATGATGCCTCATTTAA+TGG | + | chr2_1:59514810-59514829 | Msa0214890:intron | 35.0% | |
| ! | AAGGGATGTGCTATTCAATT+AGG | + | chr2_1:59515176-59515195 | Msa0214890:intron | 35.0% |
| GCAAATGATGCCTCATTTAA+TGG | + | chr2_1:59515660-59515679 | Msa0214890:CDS | 35.0% | |
| ATTTGAACCCACATTCTTTC+TGG | - | chr2_1:59516248-59516267 | None:intergenic | 35.0% | |
| TCATTACTCTCTCAACACTT+TGG | - | chr2_1:59516386-59516405 | None:intergenic | 35.0% | |
| ACATGAAAAGGTGATATACG+TGG | + | chr2_1:59516457-59516476 | Msa0214890:intron | 35.0% | |
| ACATATCTCCCAAACAAGTA+CGG | - | chr2_1:59516601-59516620 | None:intergenic | 35.0% | |
| TCATGGATGGAAGATATGTA+TGG | + | chr2_1:59516629-59516648 | Msa0214890:CDS | 35.0% | |
| ! | CCATTAAATGAGGCATCATT+TGG | - | chr2_1:59514813-59514832 | None:intergenic | 35.0% |
| CCAAATGATGCCTCATTTAA+TGG | + | chr2_1:59514810-59514829 | Msa0214890:intron | 35.0% | |
| ! | AAGGGATGTGCTATTCAATT+AGG | + | chr2_1:59515176-59515195 | Msa0214890:intron | 35.0% |
| GCAAATGATGCCTCATTTAA+TGG | + | chr2_1:59515660-59515679 | Msa0214890:CDS | 35.0% | |
| ATTTGAACCCACATTCTTTC+TGG | - | chr2_1:59516248-59516267 | None:intergenic | 35.0% | |
| TCATTACTCTCTCAACACTT+TGG | - | chr2_1:59516386-59516405 | None:intergenic | 35.0% | |
| ACATGAAAAGGTGATATACG+TGG | + | chr2_1:59516457-59516476 | Msa0214890:intron | 35.0% | |
| ACATATCTCCCAAACAAGTA+CGG | - | chr2_1:59516601-59516620 | None:intergenic | 35.0% | |
| TCATGGATGGAAGATATGTA+TGG | + | chr2_1:59516629-59516648 | Msa0214890:CDS | 35.0% | |
| GGACACAAATAAGTCCTTCA+AGG | - | chr2_1:59515703-59515722 | None:intergenic | 40.0% | |
| AGTACATCCCTTACCAACTT+TGG | - | chr2_1:59516016-59516035 | None:intergenic | 40.0% | |
| CAATAAAAGTTGCGTCACCA+AGG | - | chr2_1:59516073-59516092 | None:intergenic | 40.0% | |
| CTCTCAACACTTTGGTTAGT+TGG | - | chr2_1:59516378-59516397 | None:intergenic | 40.0% | |
| !! | TACGTGGAAGCATCTGAATT+TGG | + | chr2_1:59516473-59516492 | Msa0214890:CDS | 40.0% |
| !! | ACGTGGAAGCATCTGAATTT+GGG | + | chr2_1:59516474-59516493 | Msa0214890:CDS | 40.0% |
| AATTTGGGAGCTTGGTTGAA+GGG | + | chr2_1:59516489-59516508 | Msa0214890:CDS | 40.0% | |
| ! | CTCACTTGCATTTGAAGTTG+TGG | - | chr2_1:59516546-59516565 | None:intergenic | 40.0% |
| ! | AGATGAGTACCGTACTTGTT+TGG | + | chr2_1:59516589-59516608 | Msa0214890:CDS | 40.0% |
| ! | GATGAGTACCGTACTTGTTT+GGG | + | chr2_1:59516590-59516609 | Msa0214890:CDS | 40.0% |
| GGACACAAATAAGTCCTTCA+AGG | - | chr2_1:59515703-59515722 | None:intergenic | 40.0% | |
| AGTACATCCCTTACCAACTT+TGG | - | chr2_1:59516016-59516035 | None:intergenic | 40.0% | |
| CAATAAAAGTTGCGTCACCA+AGG | - | chr2_1:59516073-59516092 | None:intergenic | 40.0% | |
| CTCTCAACACTTTGGTTAGT+TGG | - | chr2_1:59516378-59516397 | None:intergenic | 40.0% | |
| !! | TACGTGGAAGCATCTGAATT+TGG | + | chr2_1:59516473-59516492 | Msa0214890:CDS | 40.0% |
| !! | ACGTGGAAGCATCTGAATTT+GGG | + | chr2_1:59516474-59516493 | Msa0214890:CDS | 40.0% |
| AATTTGGGAGCTTGGTTGAA+GGG | + | chr2_1:59516489-59516508 | Msa0214890:CDS | 40.0% | |
| ! | CTCACTTGCATTTGAAGTTG+TGG | - | chr2_1:59516546-59516565 | None:intergenic | 40.0% |
| ! | AGATGAGTACCGTACTTGTT+TGG | + | chr2_1:59516589-59516608 | Msa0214890:CDS | 40.0% |
| ! | GATGAGTACCGTACTTGTTT+GGG | + | chr2_1:59516590-59516609 | Msa0214890:CDS | 40.0% |
| AGCACATCCCTTACCAACTT+TGG | - | chr2_1:59515168-59515187 | None:intergenic | 45.0% | |
| AGCATCTGAATTTGGGAGCT+TGG | + | chr2_1:59516481-59516500 | Msa0214890:CDS | 45.0% | |
| GAATTTGGGAGCTTGGTTGA+AGG | + | chr2_1:59516488-59516507 | Msa0214890:CDS | 45.0% | |
| AGCACATCCCTTACCAACTT+TGG | - | chr2_1:59515168-59515187 | None:intergenic | 45.0% | |
| AGCATCTGAATTTGGGAGCT+TGG | + | chr2_1:59516481-59516500 | Msa0214890:CDS | 45.0% | |
| GAATTTGGGAGCTTGGTTGA+AGG | + | chr2_1:59516488-59516507 | Msa0214890:CDS | 45.0% | |
| GTTGAAGGGATGCGTCCAAA+TGG | + | chr2_1:59516503-59516522 | Msa0214890:CDS | 50.0% | |
| GTTGAAGGGATGCGTCCAAA+TGG | + | chr2_1:59516503-59516522 | Msa0214890:CDS | 50.0% | |
| TGTGTGTACGCACGCACGCG+CGG | - | chr2_1:59515476-59515495 | None:intergenic | 65.0% | |
| TGTGTGTACGCACGCACGCG+CGG | - | chr2_1:59515476-59515495 | None:intergenic | 65.0% | |
| GTGTGTACGCACGCACGCGC+GGG | - | chr2_1:59515475-59515494 | None:intergenic | 70.0% | |
| GTGTGTACGCACGCACGCGC+GGG | - | chr2_1:59515475-59515494 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 59514694 | 59516667 | 59514694 | ID=Msa0214890;Name=Msa0214890 |
| chr2_1 | mRNA | 59514694 | 59516667 | 59514694 | ID=Msa0214890-mRNA-1;Parent=Msa0214890;Name=Msa0214890-mRNA-1;_AED=0.62;_eAED=0.66;_QI=0|0|0|0.14|0|0.28|7|0|105 |
| chr2_1 | exon | 59514694 | 59514699 | 59514694 | ID=Msa0214890-mRNA-1:exon:16423;Parent=Msa0214890-mRNA-1 |
| chr2_1 | exon | 59515164 | 59515169 | 59515164 | ID=Msa0214890-mRNA-1:exon:16424;Parent=Msa0214890-mRNA-1 |
| chr2_1 | exon | 59515281 | 59515287 | 59515281 | ID=Msa0214890-mRNA-1:exon:16425;Parent=Msa0214890-mRNA-1 |
| chr2_1 | exon | 59515655 | 59515740 | 59515655 | ID=Msa0214890-mRNA-1:exon:16426;Parent=Msa0214890-mRNA-1 |
| chr2_1 | exon | 59515813 | 59515818 | 59515813 | ID=Msa0214890-mRNA-1:exon:16427;Parent=Msa0214890-mRNA-1 |
| chr2_1 | exon | 59516012 | 59516017 | 59516012 | ID=Msa0214890-mRNA-1:exon:16428;Parent=Msa0214890-mRNA-1 |
| chr2_1 | exon | 59516467 | 59516667 | 59516467 | ID=Msa0214890-mRNA-1:exon:16429;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59514694 | 59514699 | 59514694 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59515164 | 59515169 | 59515164 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59515281 | 59515287 | 59515281 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59515655 | 59515740 | 59515655 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59515813 | 59515818 | 59515813 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59516012 | 59516017 | 59516012 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| chr2_1 | CDS | 59516467 | 59516667 | 59516467 | ID=Msa0214890-mRNA-1:cds;Parent=Msa0214890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
