AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0283620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283620 MtrunA17_Chr2g0284321 95.495 222 2 2 1 220 1 216 1.67e-155 429
Msa0283620 MtrunA17_Chr8g0379461 53.769 199 63 7 11 197 46 227 2.65e-62 194
Msa0283620 MtrunA17_Chr2g0319961 51.980 202 80 6 7 194 47 245 1.24e-59 188
Msa0283620 MtrunA17_Chr7g0248691 60.440 91 30 1 9 99 134 218 2.50e-33 122
Msa0283620 MtrunA17_Chr8g0348311 50.000 126 49 3 4 121 129 248 8.81e-33 120
Msa0283620 MtrunA17_Chr2g0293481 50.769 130 48 3 11 124 239 368 1.32e-32 122
Msa0283620 MtrunA17_Chr7g0270051 52.252 111 48 3 9 116 24 132 5.61e-32 117
Msa0283620 MtrunA17_Chr8g0387501 76.562 64 15 0 36 99 130 193 1.50e-31 116
Msa0283620 MtrunA17_Chr5g0401821 54.945 91 40 1 4 94 169 258 1.35e-28 108
Msa0283620 MtrunA17_Chr1g0147881 54.762 84 37 1 11 94 239 321 8.99e-28 107
Msa0283620 MtrunA17_Chr1g0202461 72.308 65 18 0 35 99 261 325 2.23e-27 107
Msa0283620 MtrunA17_Chr4g0053281 55.172 87 37 2 9 94 240 325 2.26e-27 106
Msa0283620 MtrunA17_Chr4g0071521 56.471 85 36 1 9 93 220 303 2.86e-27 105
Msa0283620 MtrunA17_Chr1g0184691 55.294 85 37 1 12 96 271 354 2.98e-26 103
Msa0283620 MtrunA17_Chr7g0228941 64.407 59 21 0 34 92 51 109 3.97e-25 95.5
Msa0283620 MtrunA17_Chr3g0139021 51.163 86 41 1 11 96 291 375 4.22e-24 98.6
Msa0283620 MtrunA17_Chr2g0289181 59.677 62 25 0 34 95 13 74 3.83e-22 90.5
Msa0283620 MtrunA17_Chr3g0099641 58.065 62 26 0 35 96 251 312 2.70e-19 85.5
Msa0283620 MtrunA17_Chr7g0218081 42.017 119 50 4 11 116 375 487 6.10e-19 84.7
Msa0283620 MtrunA17_Chr7g0218081 43.182 88 47 3 31 118 224 308 1.38e-14 72.0
Msa0283620 MtrunA17_Chr7g0270831 56.452 62 27 0 35 96 216 277 7.20e-19 84.3
Msa0283620 MtrunA17_Chr4g0051881 56.667 60 25 1 36 95 179 237 8.06e-19 83.2
Msa0283620 MtrunA17_Chr5g0443131 55.000 60 26 1 36 95 158 216 1.00e-18 82.8
Msa0283620 MtrunA17_Chr2g0288871 56.452 62 27 0 35 96 305 366 1.13e-18 84.0
Msa0283620 MtrunA17_Chr2g0302391 55.738 61 27 0 36 96 212 272 1.36e-18 83.6
Msa0283620 MtrunA17_Chr7g0263531 53.846 78 30 3 36 113 362 433 4.28e-18 82.0
Msa0283620 MtrunA17_Chr7g0263531 49.206 63 30 2 33 95 187 247 2.08e-14 71.2
Msa0283620 MtrunA17_Chr3g0079691 38.596 114 65 4 32 142 277 388 4.67e-18 82.4
Msa0283620 MtrunA17_Chr3g0079691 41.053 95 46 3 36 121 496 589 1.02e-14 72.4
Msa0283620 MtrunA17_Chr2g0322391 54.839 62 28 0 35 96 349 410 5.76e-18 82.0
Msa0283620 MtrunA17_Chr5g0418191 47.500 80 40 2 36 114 321 399 7.74e-18 81.3
Msa0283620 MtrunA17_Chr5g0418191 32.520 123 80 3 33 155 149 268 1.86e-15 74.3
Msa0283620 MtrunA17_Chr5g0418781 54.688 64 27 2 36 98 125 187 7.86e-18 79.7
Msa0283620 MtrunA17_Chr4g0042831 47.561 82 40 2 36 115 279 359 8.33e-18 80.9
Msa0283620 MtrunA17_Chr4g0042831 35.246 122 68 3 7 126 125 237 1.05e-12 66.2
Msa0283620 MtrunA17_Chr4g0060271 52.459 61 29 0 35 95 255 315 6.81e-17 79.0
Msa0283620 MtrunA17_Chr4g0075201 51.613 62 30 0 35 96 267 328 7.11e-17 78.6
Msa0283620 MtrunA17_Chr4g0025051 52.459 61 29 0 35 95 335 395 7.62e-17 78.6
Msa0283620 MtrunA17_Chr4g0025061 50.000 64 32 0 32 95 357 420 9.95e-17 78.2
Msa0283620 MtrunA17_Chr5g0445311 50.794 63 30 1 36 98 365 426 1.15e-16 78.2
Msa0283620 MtrunA17_Chr5g0445311 32.168 143 94 3 36 178 201 340 2.24e-14 71.6
Msa0283620 MtrunA17_Chr1g0194481 48.333 60 30 1 36 95 159 217 1.85e-16 76.6
Msa0283620 MtrunA17_Chr3g0101131 50.000 64 31 1 36 99 416 478 2.01e-16 77.4
Msa0283620 MtrunA17_Chr3g0101131 34.579 107 66 4 36 142 244 346 8.75e-11 60.8
Msa0283620 MtrunA17_Chr4g0051181 52.459 61 29 0 35 95 243 303 3.13e-16 76.6
Msa0283620 MtrunA17_Chr1g0150281 49.123 57 29 0 36 92 141 197 3.16e-16 75.5
Msa0283620 MtrunA17_Chr3g0106491 43.158 95 51 2 14 106 342 435 5.52e-16 76.3
Msa0283620 MtrunA17_Chr3g0106491 40.909 110 59 5 36 143 199 304 2.15e-13 68.6
Msa0283620 MtrunA17_Chr5g0432161 52.381 63 29 1 36 98 422 483 6.01e-16 76.3
Msa0283620 MtrunA17_Chr5g0432161 48.333 60 29 2 36 95 245 302 1.60e-11 63.2
Msa0283620 MtrunA17_Chr7g0270191 51.667 60 28 1 36 95 146 204 8.64e-16 74.3
Msa0283620 MtrunA17_Chr7g0249301 55.000 60 25 2 36 95 63 120 9.28e-16 75.1
Msa0283620 MtrunA17_Chr7g0249301 50.794 63 30 1 36 98 293 354 7.63e-15 72.4
Msa0283620 MtrunA17_Chr4g0068541 48.333 60 30 1 36 95 209 267 1.39e-15 74.7
Msa0283620 MtrunA17_Chr7g0238921 40.000 105 56 3 36 134 125 228 1.42e-15 73.9
Msa0283620 MtrunA17_Chr7g0216891 53.448 58 27 0 35 92 219 276 1.51e-15 74.7
Msa0283620 MtrunA17_Chr1g0150271 46.667 60 32 0 36 95 102 161 2.79e-15 72.4
Msa0283620 MtrunA17_Chr3g0136961 43.056 72 41 0 36 107 139 210 3.00e-15 72.8
Msa0283620 MtrunA17_Chr7g0249311 48.052 77 34 2 36 112 393 463 3.40e-15 73.9
Msa0283620 MtrunA17_Chr7g0249311 48.611 72 34 3 24 95 169 237 9.55e-15 72.8
Msa0283620 MtrunA17_Chr6g0485431 51.613 62 28 2 35 95 154 214 3.83e-15 73.2
Msa0283620 MtrunA17_Chr4g0001361 42.857 70 40 0 27 96 154 223 4.57e-15 72.8
Msa0283620 MtrunA17_Chr7g0275531 46.479 71 32 2 36 100 119 189 1.59e-14 71.2
Msa0283620 MtrunA17_Chr4g0074001 47.619 63 32 1 36 98 360 421 3.05e-14 70.9
Msa0283620 MtrunA17_Chr2g0294231 46.667 60 31 1 36 95 204 262 3.33e-14 70.5
Msa0283620 MtrunA17_Chr2g0333851 45.000 60 33 0 36 95 170 229 4.01e-14 70.1
Msa0283620 MtrunA17_Chr8g0347251 30.827 133 83 3 9 134 110 240 5.12e-14 70.1
Msa0283620 MtrunA17_Chr3g0126391 50.000 60 28 1 33 90 131 190 5.42e-14 69.7
Msa0283620 MtrunA17_Chr3g0129321 48.333 60 30 1 36 95 119 177 6.27e-14 67.8
Msa0283620 MtrunA17_Chr8g0387981 31.724 145 86 4 9 146 106 244 8.20e-14 69.3
Msa0283620 MtrunA17_Chr4g0004911 49.206 63 31 1 36 98 337 398 9.68e-14 69.7
Msa0283620 MtrunA17_Chr5g0447701 50.000 60 29 1 36 95 253 311 1.10e-13 69.3
Msa0283620 MtrunA17_Chr5g0447701 48.333 60 29 2 36 95 93 150 5.81e-11 61.2
Msa0283620 MtrunA17_Chr1g0189391 55.932 59 24 2 36 93 98 155 1.15e-13 68.9
Msa0283620 MtrunA17_Chr1g0188941 38.298 94 48 2 4 97 29 112 1.23e-13 65.1
Msa0283620 MtrunA17_Chr1g0150801 49.123 57 28 1 36 92 103 158 2.46e-13 65.5
Msa0283620 MtrunA17_Chr5g0428351 35.433 127 69 5 36 152 184 307 3.24e-13 67.4
Msa0283620 MtrunA17_Chr7g0243891 47.619 63 32 1 36 98 375 436 3.68e-13 67.8
Msa0283620 MtrunA17_Chr7g0243891 45.588 68 33 3 36 103 217 280 5.83e-12 64.3
Msa0283620 MtrunA17_Chr4g0024391 45.312 64 35 0 32 95 226 289 5.98e-13 67.4
Msa0283620 MtrunA17_Chr8g0383351 46.552 58 30 1 36 93 161 217 1.19e-12 65.1
Msa0283620 MtrunA17_Chr3g0129361 46.552 58 30 1 36 93 145 201 1.57e-12 64.3
Msa0283620 MtrunA17_Chr8g0335811 48.276 58 29 1 36 93 155 211 1.83e-12 64.3
Msa0283620 MtrunA17_Chr8g0383251 45.000 60 32 1 36 95 109 167 2.05e-12 63.5
Msa0283620 MtrunA17_Chr7g0224801 44.068 59 32 1 36 94 94 151 5.11e-12 62.0
Msa0283620 MtrunA17_Chr7g0248721 47.368 57 28 2 36 92 142 196 2.83e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283620 AT1G29280.1 48.214 224 94 7 4 208 38 258 2.59e-57 182
Msa0283620 AT3G58710.2 45.714 210 89 6 11 197 41 248 6.83e-49 161
Msa0283620 AT3G58710.1 45.455 209 89 6 12 197 43 249 2.59e-48 160
Msa0283620 AT2G34830.2 36.709 237 101 5 6 203 185 411 4.43e-33 124
Msa0283620 AT2G34830.1 36.709 237 101 5 6 203 176 402 4.78e-33 123
Msa0283620 AT4G01250.1 44.000 150 69 3 7 155 105 240 3.24e-32 119
Msa0283620 AT1G30650.1 61.290 93 32 1 11 99 189 281 3.35e-31 118
Msa0283620 AT4G23550.1 49.612 129 54 4 16 143 126 244 1.60e-30 114
Msa0283620 AT5G52830.1 49.153 118 50 3 9 125 144 252 6.25e-30 114
Msa0283620 AT2G23320.1 53.488 86 39 1 9 94 215 299 4.41e-29 111
Msa0283620 AT4G24240.1 56.977 86 36 1 9 94 256 340 8.12e-28 108
Msa0283620 AT5G45050.2 55.914 93 36 1 7 99 1129 1216 1.16e-26 107
Msa0283620 AT2G30590.1 56.098 82 35 1 11 92 290 370 1.17e-26 105
Msa0283620 AT5G45050.1 55.914 93 36 1 7 99 1157 1244 1.31e-26 107
Msa0283620 AT5G45050.4 55.914 93 36 1 7 99 1018 1105 1.51e-26 107
Msa0283620 AT4G31550.2 54.878 82 36 1 11 92 222 302 2.50e-26 103
Msa0283620 AT4G31550.1 54.321 81 36 1 12 92 224 303 1.11e-25 102
Msa0283620 AT3G04670.1 51.648 91 43 1 3 93 231 320 2.25e-25 101
Msa0283620 AT2G24570.1 54.321 81 36 1 12 92 221 300 4.27e-25 100
Msa0283620 AT5G28650.1 50.549 91 44 1 3 93 231 320 6.18e-25 100
Msa0283620 AT5G46350.1 51.220 82 39 1 36 117 184 264 1.81e-21 90.9
Msa0283620 AT2G04880.1 44.828 87 45 2 36 120 308 393 1.77e-19 86.7
Msa0283620 AT2G04880.2 44.828 87 45 2 36 120 284 369 1.87e-19 86.3
Msa0283620 AT4G04450.2 56.452 62 27 0 35 96 198 259 5.31e-19 85.1
Msa0283620 AT4G18170.1 56.667 60 25 1 36 95 173 231 5.45e-19 84.0
Msa0283620 AT4G04450.1 56.452 62 27 0 35 96 292 353 7.57e-19 84.7
Msa0283620 AT1G62300.1 54.839 62 28 0 35 96 312 373 1.30e-18 84.3
Msa0283620 AT4G22070.4 54.839 62 28 0 35 96 297 358 2.05e-18 83.6
Msa0283620 AT4G22070.3 54.839 62 28 0 35 96 297 358 2.05e-18 83.6
Msa0283620 AT4G22070.2 54.839 62 28 0 35 96 297 358 2.05e-18 83.6
Msa0283620 AT4G22070.1 54.839 62 28 0 35 96 297 358 2.05e-18 83.6
Msa0283620 AT1G29860.1 53.333 60 27 1 36 95 137 195 2.49e-18 81.6
Msa0283620 AT5G45260.1 45.455 99 43 4 17 113 1197 1286 2.63e-18 83.6
Msa0283620 AT4G01720.1 53.846 65 30 0 32 96 236 300 1.77e-17 80.9
Msa0283620 AT2G40740.1 42.424 99 49 2 1 91 133 231 2.14e-17 79.3
Msa0283620 AT2G40740.3 42.857 98 48 2 1 90 142 239 2.56e-17 79.3
Msa0283620 AT2G03340.1 42.574 101 43 3 11 98 379 477 6.08e-17 79.3
Msa0283620 AT2G03340.1 41.379 87 44 3 28 114 243 322 3.72e-14 71.2
Msa0283620 AT1G68150.1 53.333 60 28 0 36 95 236 295 1.47e-16 77.8
Msa0283620 AT4G31800.2 41.250 80 46 1 16 95 93 171 3.15e-16 75.5
Msa0283620 AT1G18860.1 52.459 61 29 0 35 95 239 299 3.43e-16 77.0
Msa0283620 AT4G31800.1 45.455 66 36 0 30 95 171 236 4.88e-16 75.9
Msa0283620 AT5G15130.1 50.820 61 30 0 35 95 227 287 5.00e-16 76.6
Msa0283620 AT5G15130.2 50.820 61 30 0 35 95 185 245 5.51e-16 76.6
Msa0283620 AT5G07100.2 49.206 63 31 1 36 98 142 203 8.45e-16 73.6
Msa0283620 AT5G07100.2 30.252 119 74 3 27 139 16 131 8.61e-11 60.1
Msa0283620 AT5G07100.4 49.206 63 31 1 36 98 142 203 8.45e-16 73.6
Msa0283620 AT5G07100.4 30.252 119 74 3 27 139 16 131 8.61e-11 60.1
Msa0283620 AT5G07100.5 49.206 63 31 1 36 98 142 203 8.45e-16 73.6
Msa0283620 AT5G07100.5 30.252 119 74 3 27 139 16 131 8.61e-11 60.1
Msa0283620 AT5G07100.3 49.206 63 31 1 36 98 142 203 8.45e-16 73.6
Msa0283620 AT5G07100.3 30.252 119 74 3 27 139 16 131 8.61e-11 60.1
Msa0283620 AT4G26440.1 43.902 82 43 3 33 114 176 254 8.71e-16 75.9
Msa0283620 AT4G26440.1 48.438 64 32 1 36 99 373 435 4.37e-14 70.9
Msa0283620 AT5G26170.1 50.000 58 28 1 36 93 114 170 9.20e-16 72.8
Msa0283620 AT1G13960.1 51.667 60 28 1 36 95 410 468 9.63e-16 75.9
Msa0283620 AT1G13960.1 38.384 99 58 3 10 108 204 299 1.51e-14 72.4
Msa0283620 AT1G13960.2 51.667 60 28 1 36 95 257 315 1.07e-15 75.1
Msa0283620 AT1G13960.2 44.872 78 40 3 31 108 72 146 1.90e-14 71.6
Msa0283620 AT2G25000.2 45.455 66 36 0 30 95 98 163 1.56e-15 73.2
Msa0283620 AT2G25000.4 45.455 66 36 0 30 95 98 163 1.56e-15 73.2
Msa0283620 AT4G30935.1 47.619 63 32 1 36 98 332 393 1.72e-15 75.1
Msa0283620 AT2G37260.2 43.678 87 48 1 8 94 240 325 2.12e-15 74.3
Msa0283620 AT2G37260.2 48.333 60 29 2 36 95 84 141 1.40e-11 63.2
Msa0283620 AT2G37260.3 43.678 87 48 1 8 94 242 327 2.19e-15 74.3
Msa0283620 AT2G37260.3 48.333 60 29 2 36 95 86 143 1.45e-11 63.2
Msa0283620 AT4G23810.1 32.847 137 86 2 6 140 129 261 2.34e-15 73.9
Msa0283620 AT2G47260.1 48.333 60 30 1 36 95 175 233 2.47e-15 73.9
Msa0283620 AT2G37260.1 43.678 87 48 1 8 94 322 407 2.75e-15 74.3
Msa0283620 AT2G37260.1 48.333 60 29 2 36 95 166 223 1.28e-11 63.5
Msa0283620 AT5G49520.1 50.000 60 29 1 36 95 222 280 2.79e-15 74.3
Msa0283620 AT5G07100.1 49.206 63 31 1 36 98 235 296 2.91e-15 73.6
Msa0283620 AT2G38470.1 50.794 63 30 1 36 98 363 424 3.03e-15 74.3
Msa0283620 AT2G38470.1 46.667 60 30 2 36 95 185 242 2.09e-11 63.2
Msa0283620 AT3G01080.2 51.667 60 28 1 36 95 345 403 3.15e-15 74.3
Msa0283620 AT3G01080.2 47.059 68 34 2 31 98 201 266 1.39e-13 69.3
Msa0283620 AT4G11070.2 40.426 94 52 2 8 97 82 175 3.36e-15 73.2
Msa0283620 AT4G11070.1 40.426 94 52 2 8 97 114 207 3.56e-15 73.2
Msa0283620 AT2G25000.3 45.455 66 36 0 30 95 120 185 3.65e-15 72.4
Msa0283620 AT3G01080.1 51.667 60 28 1 36 95 307 365 3.97e-15 73.9
Msa0283620 AT3G01080.1 47.059 68 34 2 31 98 163 228 1.46e-13 69.3
Msa0283620 AT2G25000.1 45.455 66 36 0 30 95 141 206 4.18e-15 72.8
Msa0283620 AT4G26640.5 50.000 60 29 1 36 95 206 264 4.19e-15 73.6
Msa0283620 AT4G26640.5 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
Msa0283620 AT4G26640.6 50.000 60 29 1 36 95 206 264 4.19e-15 73.6
Msa0283620 AT4G26640.6 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
Msa0283620 AT4G26640.4 50.000 60 29 1 36 95 206 264 4.19e-15 73.6
Msa0283620 AT4G26640.4 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
Msa0283620 AT4G26640.3 50.000 60 29 1 36 95 206 264 4.19e-15 73.6
Msa0283620 AT4G26640.3 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
Msa0283620 AT4G26640.2 50.000 60 29 1 36 95 382 440 4.26e-15 73.9
Msa0283620 AT4G26640.2 45.161 62 32 2 36 97 212 271 5.90e-11 62.0
Msa0283620 AT4G26640.1 50.000 60 29 1 36 95 310 368 4.36e-15 73.9
Msa0283620 AT4G26640.1 45.161 62 32 2 36 97 140 199 6.10e-11 61.6
Msa0283620 AT4G26640.7 50.000 60 29 1 36 95 342 400 4.67e-15 73.9
Msa0283620 AT4G26640.7 45.161 62 32 2 36 97 172 231 6.81e-11 61.6
Msa0283620 AT2G21900.1 41.860 86 43 2 16 95 84 168 5.06e-15 71.2
Msa0283620 AT3G62340.1 45.455 77 38 2 36 109 119 194 5.30e-15 72.4
Msa0283620 AT1G80840.1 34.615 104 67 1 15 117 125 228 6.23e-15 72.4
Msa0283620 AT1G69310.4 49.153 59 29 1 36 94 148 205 6.89e-15 72.4
Msa0283620 AT1G69310.2 49.153 59 29 1 36 94 148 205 6.89e-15 72.4
Msa0283620 AT1G69310.1 49.153 59 29 1 36 94 148 205 6.89e-15 72.4
Msa0283620 AT1G69810.1 50.000 62 30 1 35 95 203 264 7.01e-15 73.2
Msa0283620 AT1G69810.2 50.000 62 30 1 35 95 145 206 1.06e-14 72.0
Msa0283620 AT5G56270.1 49.206 63 31 1 36 98 488 549 4.29e-14 71.2
Msa0283620 AT5G56270.1 47.692 65 32 2 33 97 271 333 1.74e-13 69.3
Msa0283620 AT3G01970.1 46.774 62 32 1 36 97 66 126 1.28e-13 66.2
Msa0283620 AT3G01080.3 47.692 65 32 2 31 95 201 263 1.31e-13 68.9
Msa0283620 AT1G64000.1 49.123 57 28 1 36 92 115 170 2.54e-13 66.6
Msa0283620 AT1G55600.1 36.782 87 50 2 10 96 286 367 5.85e-13 67.8
Msa0283620 AT2G30250.1 48.333 60 30 1 36 95 329 387 6.18e-13 67.4
Msa0283620 AT5G41570.1 49.123 57 28 1 36 92 99 154 9.48e-13 64.7
Msa0283620 AT1G66560.1 52.542 59 26 1 34 90 102 160 1.01e-12 65.9
Msa0283620 AT2G46130.1 47.368 57 29 1 36 92 31 86 1.65e-12 62.4
Msa0283620 AT2G46400.1 40.000 80 45 2 28 104 97 176 1.74e-12 65.5
Msa0283620 AT2G44745.1 49.123 57 28 1 36 92 146 201 2.36e-12 64.3
Msa0283620 AT5G13080.1 44.068 59 32 1 36 94 68 125 2.51e-12 62.8
Msa0283620 AT1G80590.1 39.130 92 50 2 5 90 51 142 2.73e-12 64.3
Msa0283620 AT5G43290.1 38.542 96 48 2 1 96 90 174 5.57e-12 63.9
Msa0283620 AT3G56400.1 35.802 81 48 2 12 90 99 177 5.68e-12 63.9
Msa0283620 AT5G01900.1 40.244 82 46 2 12 90 86 167 1.23e-11 62.8
Msa0283620 AT5G24110.1 43.750 64 34 1 29 90 107 170 1.35e-11 63.2
Msa0283620 AT4G39410.1 46.552 58 30 1 36 93 224 280 2.27e-11 62.4
Msa0283620 AT1G66550.2 32.374 139 84 5 5 136 70 205 2.66e-11 61.6
Msa0283620 AT1G66550.1 37.383 107 60 4 34 136 107 210 8.35e-11 60.5

Find 98 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTATCATTTGTTTATT+AGG 0.129965 2_3:-20981673 None:intergenic
TCATTATCATTTGTTTATTA+GGG 0.180992 2_3:-20981672 None:intergenic
GACCCTTAATCACTCTTAAA+AGG 0.221949 2_3:-20981859 None:intergenic
GGAGCTTTGTGGAGACTTAT+TGG 0.236522 2_3:-20981714 None:intergenic
CACTCTCTTCTTCTGCTAAA+AGG 0.248402 2_3:+20981987 Msa0283620:CDS
CATGAAATTAAGAACTTAAT+AGG 0.259309 2_3:-20983355 None:intergenic
ACCTCTTTCTATGCTTAATT+AGG 0.267112 2_3:+20981805 Msa0283620:five_prime_UTR
TCGGGTTCTTGTTCTTGTTC+TGG 0.268469 2_3:-20982852 None:intergenic
TCTTGTTCTTGTTCTGGTTC+AGG 0.273307 2_3:-20982846 None:intergenic
CTGGTGTTGCGGTAGTTTCT+TGG 0.299051 2_3:-20982786 None:intergenic
CGGAGTGTTCGACGGTGTTT+TGG 0.329073 2_3:+20983060 Msa0283620:CDS
CGGGTTTGTTGGGTTTAGTT+TGG 0.344993 2_3:+20983190 Msa0283620:three_prime_UTR
TGGATAAGGGGAACCTTTGA+TGG 0.349515 2_3:-20982330 None:intergenic
GTTTGATGCGGTGTTGTTGC+TGG 0.368100 2_3:-20982805 None:intergenic
TTGAAGAAGATTATAAAGAT+TGG 0.368130 2_3:-20981756 None:intergenic
GTCCCTTCCACATTCTTCAT+TGG 0.371466 2_3:-20982257 None:intergenic
TGCCGATCTCGGAGAGTTGC+CGG 0.372131 2_3:+20983040 Msa0283620:CDS
TGATGATCTTTCCATGTTAG+AGG 0.376413 2_3:-20981966 None:intergenic
TCATGGGCTTGGAGAAAGTA+TGG 0.382534 2_3:+20982299 Msa0283620:CDS
GAGAATGAATACCTTGGATA+AGG 0.400647 2_3:-20982344 None:intergenic
CACCGTCTGATTCATGGGCT+TGG 0.402885 2_3:+20982288 Msa0283620:CDS
CACTCCACCGTCTGATTCAT+GGG 0.406966 2_3:+20982283 Msa0283620:CDS
ACACTCCACCGTCTGATTCA+TGG 0.409389 2_3:+20982282 Msa0283620:CDS
AGAATGAATACCTTGGATAA+GGG 0.413010 2_3:-20982343 None:intergenic
TAGGCGAGGTATAAAGAAAA+GGG 0.417404 2_3:+20982223 Msa0283620:intron
CATAAGATGCGGTACTCAAC+CGG 0.417532 2_3:+20981643 None:intergenic
ATGTCGTTGTTTGCCGATCT+CGG 0.427384 2_3:+20983029 Msa0283620:CDS
AGTGTCTATGTTGGGAGAAG+AGG 0.434526 2_3:+20983004 Msa0283620:CDS
GATGAGTTAGGCGGATGGTT+TGG 0.439520 2_3:+20982921 Msa0283620:CDS
CTCTAAAACTAGGAGCTTTG+TGG 0.442692 2_3:-20981725 None:intergenic
ATAGGCGAGGTATAAAGAAA+AGG 0.449369 2_3:+20982222 Msa0283620:intron
AGGAGGAGTGGTGCCGGCGC+CGG 0.456828 2_3:+20983089 Msa0283620:CDS
AGGCGGATGGTTTGGAGATG+TGG 0.458894 2_3:+20982929 Msa0283620:CDS
TTTCATGCTTGATTCATAGC+TGG 0.481465 2_3:+20983371 Msa0283620:three_prime_UTR
TTGCGGTAGTTTCTTGGTGG+TGG 0.484307 2_3:-20982780 None:intergenic
GATATTCGTAAACGTTTCAT+CGG 0.485537 2_3:-20982871 None:intergenic
GAGAAGGAAGTGTCTATGTT+GGG 0.500215 2_3:+20982996 Msa0283620:CDS
TTGTTTATTAGGGGAACGTC+CGG 0.502136 2_3:-20981662 None:intergenic
ATATTCGTAAACGTTTCATC+GGG 0.505400 2_3:-20982870 None:intergenic
TGGCACGGCGTGGTTGTGAT+CGG 0.521456 2_3:-20982760 None:intergenic
TTCTGAGTCTTTGTTTGATG+CGG 0.524236 2_3:-20982817 None:intergenic
ATCGGACACTCCAACACTGC+CGG 0.524605 2_3:-20982966 None:intergenic
TGATTCAATTCCCTCTAACA+TGG 0.528817 2_3:+20981955 Msa0283620:exon
GATCGGATCGCCGGCAGTGT+TGG 0.529018 2_3:+20982956 Msa0283620:CDS
GGATAAGGGGAACCTTTGAT+GGG 0.529271 2_3:-20982329 None:intergenic
ATTGCCACCGGTGATGAGTT+AGG 0.530483 2_3:+20982909 Msa0283620:CDS
AGGAGTGGTGCCGGCGCCGG+TGG 0.532501 2_3:+20983092 Msa0283620:CDS
GTAGTTTCTTGGTGGTGGCA+CGG 0.532781 2_3:-20982775 None:intergenic
GGAGAAGGAAGTGTCTATGT+TGG 0.533402 2_3:+20982995 Msa0283620:CDS
AGAGGTAGGAGGAGTGGTGC+CGG 0.538061 2_3:+20983083 Msa0283620:CDS
GTGATATGATATTTATAAAG+TGG 0.545047 2_3:-20981831 None:intergenic
ACAAGTGGGATATATGCAGT+TGG 0.547521 2_3:+20983235 Msa0283620:three_prime_UTR
GTGTTGCGGTAGTTTCTTGG+TGG 0.552712 2_3:-20982783 None:intergenic
CAAGTGGGATATATGCAGTT+GGG 0.556548 2_3:+20983236 Msa0283620:three_prime_UTR
GATGATCTTTCCATGTTAGA+GGG 0.558105 2_3:-20981965 None:intergenic
ATTCCAATGAAGAATGTGGA+AGG 0.559865 2_3:+20982254 Msa0283620:CDS
TGTGGAGGCGATCGGATCGC+CGG 0.565940 2_3:+20982947 Msa0283620:CDS
CATTATCATTTGTTTATTAG+GGG 0.567478 2_3:-20981671 None:intergenic
GGAGAGTGCCCTCTAAAACT+AGG 0.567912 2_3:-20981735 None:intergenic
GAATGAATACCTTGGATAAG+GGG 0.571511 2_3:-20982342 None:intergenic
CGGTGTTGTTGCTGGTGTTG+CGG 0.572453 2_3:-20982797 None:intergenic
TAATCACTCTTAAAAGGTGT+CGG 0.573234 2_3:-20981853 None:intergenic
CGCCGGTGGTGATGTTAGTG+TGG 0.574656 2_3:+20983106 Msa0283620:CDS
CTCCGGCAACTCTCCGAGAT+CGG 0.577094 2_3:-20983042 None:intergenic
CAAACTAAACCCAACAAACC+CGG 0.579370 2_3:-20983189 None:intergenic
TTTGGAGATGTGGAGGCGAT+CGG 0.579590 2_3:+20982939 Msa0283620:CDS
TATGGTCAAAAGCCCATCAA+AGG 0.579773 2_3:+20982317 Msa0283620:CDS
TCCCACACTAACATCACCAC+CGG 0.582238 2_3:-20983108 None:intergenic
GCTTTGTGGAGACTTATTGG+TGG 0.582983 2_3:-20981711 None:intergenic
AGAAATTCCAATGAAGAATG+TGG 0.583073 2_3:+20982250 Msa0283620:CDS
GATCGGAGGTGTATGTTACA+AGG 0.587899 2_3:-20982743 None:intergenic
TATGTTACAAGGAGAACGGT+GGG 0.590777 2_3:-20982732 None:intergenic
ACCTAATTAAGCATAGAAAG+AGG 0.591509 2_3:-20981806 None:intergenic
GAAAATTCAATGATTGCCAC+CGG 0.593733 2_3:+20982897 Msa0283620:CDS
ACTAACATCACCACCGGCGC+CGG 0.599715 2_3:-20983102 None:intergenic
CTCCAAGCCCATGAATCAGA+CGG 0.600001 2_3:-20982290 None:intergenic
GCCGGTGGTGATGTTAGTGT+GGG 0.605737 2_3:+20983107 Msa0283620:CDS
AGAGTTGCCGGAGTGTTCGA+CGG 0.606059 2_3:+20983052 Msa0283620:CDS
TTCCAATGAAGAATGTGGAA+GGG 0.616216 2_3:+20982255 Msa0283620:CDS
CAAAACACCGTCGAACACTC+CGG 0.616354 2_3:-20983059 None:intergenic
CACGGCGTGGTTGTGATCGG+AGG 0.619714 2_3:-20982757 None:intergenic
TCAAAGGTTCCCCTTATCCA+AGG 0.623779 2_3:+20982333 Msa0283620:CDS
CGGATGGTTTGGAGATGTGG+AGG 0.626281 2_3:+20982932 Msa0283620:CDS
GAGCAATTAGCTTCAACTAG+TGG 0.632709 2_3:-20983131 None:intergenic
ACTTCCTTCTCCGAAAACAT+CGG 0.637465 2_3:-20982984 None:intergenic
CCGGTGATGAGTTAGGCGGA+TGG 0.641308 2_3:+20982916 Msa0283620:CDS
GGTGTATGTTACAAGGAGAA+CGG 0.648738 2_3:-20982736 None:intergenic
CTATAGCTCGAAATTGACAG+TGG 0.649288 2_3:+20981890 Msa0283620:five_prime_UTR
TTCTTGGTGGTGGCACGGCG+TGG 0.655603 2_3:-20982770 None:intergenic
CCATCCGCCTAACTCATCAC+CGG 0.656119 2_3:-20982916 None:intergenic
GGAGAACGGTGGGGTCCATG+TGG 0.658885 2_3:-20982722 None:intergenic
TGATAATAATTACAAGCACG+TGG 0.659338 2_3:-20983270 None:intergenic
ACAAGTAGAAAGAAACCACA+TGG 0.663213 2_3:+20982707 Msa0283620:CDS
TCCGCCTAACTCATCACCGG+TGG 0.676396 2_3:-20982913 None:intergenic
GTATGTTACAAGGAGAACGG+TGG 0.715629 2_3:-20982733 None:intergenic
GCCACCGGTGATGAGTTAGG+CGG 0.726711 2_3:+20982912 Msa0283620:CDS
CAAGCCCATGAATCAGACGG+TGG 0.730326 2_3:-20982287 None:intergenic
ATGTTACAAGGAGAACGGTG+GGG 0.778163 2_3:-20982731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGTAAATATGTATAAT+AGG + chr2_3:20982204-20982223 Msa0283620:intron 10.0%
!!! TTTTATTTTTTTAATTTTCC+GGG + chr2_3:20983171-20983190 Msa0283620:three_prime_UTR 10.0%
!! AAAATGTAAATATGTATAAT+AGG + chr2_3:20982204-20982223 Msa0283620:intron 10.0%
!!! TTTTATTTTTTTAATTTTCC+GGG + chr2_3:20983171-20983190 Msa0283620:three_prime_UTR 10.0%
!! TCATTATCATTTGTTTATTA+GGG - chr2_3:20981675-20981694 None:intergenic 15.0%
!! ATCATTATCATTTGTTTATT+AGG - chr2_3:20981676-20981695 None:intergenic 15.0%
!! TCAAACTATATTAATATTGA+TGG - chr2_3:20982026-20982045 None:intergenic 15.0%
!! TCATTATCATTTGTTTATTA+GGG - chr2_3:20981675-20981694 None:intergenic 15.0%
!! ATCATTATCATTTGTTTATT+AGG - chr2_3:20981676-20981695 None:intergenic 15.0%
!! TCAAACTATATTAATATTGA+TGG - chr2_3:20982026-20982045 None:intergenic 15.0%
!! CATTATCATTTGTTTATTAG+GGG - chr2_3:20981674-20981693 None:intergenic 20.0%
!! TTGAAGAAGATTATAAAGAT+TGG - chr2_3:20981759-20981778 None:intergenic 20.0%
!! GTGATATGATATTTATAAAG+TGG - chr2_3:20981834-20981853 None:intergenic 20.0%
!! AATCTTATAAGAATTGCATA+CGG - chr2_3:20982615-20982634 None:intergenic 20.0%
!! TCTTATAAGATTTACTCATA+TGG + chr2_3:20982623-20982642 Msa0283620:intron 20.0%
!! CTTATAAGATTTACTCATAT+GGG + chr2_3:20982624-20982643 Msa0283620:intron 20.0%
!! TTATAAGATTTACTCATATG+GGG + chr2_3:20982625-20982644 Msa0283620:intron 20.0%
!! AAAAATGAAATACAACAAGT+GGG + chr2_3:20983221-20983240 Msa0283620:three_prime_UTR 20.0%
!!! TTTTTTTGACGATACTTAAT+AGG - chr2_3:20983318-20983337 None:intergenic 20.0%
!! CATGAAATTAAGAACTTAAT+AGG - chr2_3:20983358-20983377 None:intergenic 20.0%
!! AATGTTATCTGCAAAAAAAA+AGG - chr2_3:20983411-20983430 None:intergenic 20.0%
!! CATTATCATTTGTTTATTAG+GGG - chr2_3:20981674-20981693 None:intergenic 20.0%
!! TTGAAGAAGATTATAAAGAT+TGG - chr2_3:20981759-20981778 None:intergenic 20.0%
!! GTGATATGATATTTATAAAG+TGG - chr2_3:20981834-20981853 None:intergenic 20.0%
!! AATCTTATAAGAATTGCATA+CGG - chr2_3:20982615-20982634 None:intergenic 20.0%
!! TCTTATAAGATTTACTCATA+TGG + chr2_3:20982623-20982642 Msa0283620:intron 20.0%
!! CTTATAAGATTTACTCATAT+GGG + chr2_3:20982624-20982643 Msa0283620:intron 20.0%
!! TTATAAGATTTACTCATATG+GGG + chr2_3:20982625-20982644 Msa0283620:intron 20.0%
!! AAAAATGAAATACAACAAGT+GGG + chr2_3:20983221-20983240 Msa0283620:three_prime_UTR 20.0%
!!! TTTTTTTGACGATACTTAAT+AGG - chr2_3:20983318-20983337 None:intergenic 20.0%
!! CATGAAATTAAGAACTTAAT+AGG - chr2_3:20983358-20983377 None:intergenic 20.0%
!! AATGTTATCTGCAAAAAAAA+AGG - chr2_3:20983411-20983430 None:intergenic 20.0%
!! ACACTCAAATTTTGCTTAAA+AGG - chr2_3:20982104-20982123 None:intergenic 25.0%
!! TTTTTGTGACATGAATGTAA+GGG - chr2_3:20982373-20982392 None:intergenic 25.0%
!!! TTTTTTGTGACATGAATGTA+AGG - chr2_3:20982374-20982393 None:intergenic 25.0%
!!! TATTAGGGCTTTAAATTGAA+AGG - chr2_3:20982483-20982502 None:intergenic 25.0%
! CAAAAATGAAATACAACAAG+TGG + chr2_3:20983220-20983239 Msa0283620:three_prime_UTR 25.0%
! GCAAAAAAAAAGGATAACTA+TGG - chr2_3:20983401-20983420 None:intergenic 25.0%
!! ACACTCAAATTTTGCTTAAA+AGG - chr2_3:20982104-20982123 None:intergenic 25.0%
!! TTTTTGTGACATGAATGTAA+GGG - chr2_3:20982373-20982392 None:intergenic 25.0%
!!! TTTTTTGTGACATGAATGTA+AGG - chr2_3:20982374-20982393 None:intergenic 25.0%
!!! TATTAGGGCTTTAAATTGAA+AGG - chr2_3:20982483-20982502 None:intergenic 25.0%
! CAAAAATGAAATACAACAAG+TGG + chr2_3:20983220-20983239 Msa0283620:three_prime_UTR 25.0%
! GCAAAAAAAAAGGATAACTA+TGG - chr2_3:20983401-20983420 None:intergenic 25.0%
ACCTCTTTCTATGCTTAATT+AGG + chr2_3:20981805-20981824 Msa0283620:five_prime_UTR 30.0%
ACCTAATTAAGCATAGAAAG+AGG - chr2_3:20981809-20981828 None:intergenic 30.0%
! TAATCACTCTTAAAAGGTGT+CGG - chr2_3:20981856-20981875 None:intergenic 30.0%
!! ACACCTTTTAAGAGTGATTA+AGG + chr2_3:20981856-20981875 Msa0283620:five_prime_UTR 30.0%
!! CACCTTTTAAGAGTGATTAA+GGG + chr2_3:20981857-20981876 Msa0283620:five_prime_UTR 30.0%
GTAAATATGTATAATAGGCG+AGG + chr2_3:20982209-20982228 Msa0283620:intron 30.0%
AGAAATTCCAATGAAGAATG+TGG + chr2_3:20982250-20982269 Msa0283620:CDS 30.0%
AGAATGAATACCTTGGATAA+GGG - chr2_3:20982346-20982365 None:intergenic 30.0%
! TTTTGTGACATGAATGTAAG+GGG - chr2_3:20982372-20982391 None:intergenic 30.0%
! CGCTTTTATGCAAAATTCAA+AGG - chr2_3:20982442-20982461 None:intergenic 30.0%
CCTCGATCTCTAATATATTA+GGG - chr2_3:20982498-20982517 None:intergenic 30.0%
ACCTCGATCTCTAATATATT+AGG - chr2_3:20982499-20982518 None:intergenic 30.0%
! TTACTCATATGGGGAAATTT+TGG + chr2_3:20982634-20982653 Msa0283620:intron 30.0%
ATATTCGTAAACGTTTCATC+GGG - chr2_3:20982873-20982892 None:intergenic 30.0%
GATATTCGTAAACGTTTCAT+CGG - chr2_3:20982874-20982893 None:intergenic 30.0%
!!! TTTTAATTTTCCGGGTTTGT+TGG + chr2_3:20983179-20983198 Msa0283620:three_prime_UTR 30.0%
!! TTTAATTTTCCGGGTTTGTT+GGG + chr2_3:20983180-20983199 Msa0283620:three_prime_UTR 30.0%
TGATAATAATTACAAGCACG+TGG - chr2_3:20983273-20983292 None:intergenic 30.0%
ACCTCTTTCTATGCTTAATT+AGG + chr2_3:20981805-20981824 Msa0283620:five_prime_UTR 30.0%
ACCTAATTAAGCATAGAAAG+AGG - chr2_3:20981809-20981828 None:intergenic 30.0%
! TAATCACTCTTAAAAGGTGT+CGG - chr2_3:20981856-20981875 None:intergenic 30.0%
!! ACACCTTTTAAGAGTGATTA+AGG + chr2_3:20981856-20981875 Msa0283620:five_prime_UTR 30.0%
!! CACCTTTTAAGAGTGATTAA+GGG + chr2_3:20981857-20981876 Msa0283620:five_prime_UTR 30.0%
GTAAATATGTATAATAGGCG+AGG + chr2_3:20982209-20982228 Msa0283620:intron 30.0%
AGAAATTCCAATGAAGAATG+TGG + chr2_3:20982250-20982269 Msa0283620:CDS 30.0%
AGAATGAATACCTTGGATAA+GGG - chr2_3:20982346-20982365 None:intergenic 30.0%
! TTTTGTGACATGAATGTAAG+GGG - chr2_3:20982372-20982391 None:intergenic 30.0%
! CGCTTTTATGCAAAATTCAA+AGG - chr2_3:20982442-20982461 None:intergenic 30.0%
CCTCGATCTCTAATATATTA+GGG - chr2_3:20982498-20982517 None:intergenic 30.0%
ACCTCGATCTCTAATATATT+AGG - chr2_3:20982499-20982518 None:intergenic 30.0%
! TTACTCATATGGGGAAATTT+TGG + chr2_3:20982634-20982653 Msa0283620:intron 30.0%
ATATTCGTAAACGTTTCATC+GGG - chr2_3:20982873-20982892 None:intergenic 30.0%
GATATTCGTAAACGTTTCAT+CGG - chr2_3:20982874-20982893 None:intergenic 30.0%
!!! TTTTAATTTTCCGGGTTTGT+TGG + chr2_3:20983179-20983198 Msa0283620:three_prime_UTR 30.0%
!! TTTAATTTTCCGGGTTTGTT+GGG + chr2_3:20983180-20983199 Msa0283620:three_prime_UTR 30.0%
TGATAATAATTACAAGCACG+TGG - chr2_3:20983273-20983292 None:intergenic 30.0%
!!! ACAAAGCTCCTAGTTTTAGA+GGG + chr2_3:20981727-20981746 Msa0283620:five_prime_UTR 35.0%
GACCCTTAATCACTCTTAAA+AGG - chr2_3:20981862-20981881 None:intergenic 35.0%
TGATTCAATTCCCTCTAACA+TGG + chr2_3:20981955-20981974 Msa0283620:exon 35.0%
GATGATCTTTCCATGTTAGA+GGG - chr2_3:20981968-20981987 None:intergenic 35.0%
TGATGATCTTTCCATGTTAG+AGG - chr2_3:20981969-20981988 None:intergenic 35.0%
ATAGGCGAGGTATAAAGAAA+AGG + chr2_3:20982222-20982241 Msa0283620:intron 35.0%
TAGGCGAGGTATAAAGAAAA+GGG + chr2_3:20982223-20982242 Msa0283620:intron 35.0%
ATTCCAATGAAGAATGTGGA+AGG + chr2_3:20982254-20982273 Msa0283620:CDS 35.0%
TTCCAATGAAGAATGTGGAA+GGG + chr2_3:20982255-20982274 Msa0283620:CDS 35.0%
GAATGAATACCTTGGATAAG+GGG - chr2_3:20982345-20982364 None:intergenic 35.0%
GAGAATGAATACCTTGGATA+AGG - chr2_3:20982347-20982366 None:intergenic 35.0%
CCCTAATATATTAGAGATCG+AGG + chr2_3:20982495-20982514 Msa0283620:intron 35.0%
!! CTTTCTACTTGTTTTCTTGC+TGG - chr2_3:20982699-20982718 None:intergenic 35.0%
ACAAGTAGAAAGAAACCACA+TGG + chr2_3:20982707-20982726 Msa0283620:CDS 35.0%
! TTCTGAGTCTTTGTTTGATG+CGG - chr2_3:20982820-20982839 None:intergenic 35.0%
GAAAATTCAATGATTGCCAC+CGG + chr2_3:20982897-20982916 Msa0283620:CDS 35.0%
TTTCATGCTTGATTCATAGC+TGG + chr2_3:20983371-20983390 Msa0283620:three_prime_UTR 35.0%
!!! ACAAAGCTCCTAGTTTTAGA+GGG + chr2_3:20981727-20981746 Msa0283620:five_prime_UTR 35.0%
GACCCTTAATCACTCTTAAA+AGG - chr2_3:20981862-20981881 None:intergenic 35.0%
TGATTCAATTCCCTCTAACA+TGG + chr2_3:20981955-20981974 Msa0283620:exon 35.0%
GATGATCTTTCCATGTTAGA+GGG - chr2_3:20981968-20981987 None:intergenic 35.0%
TGATGATCTTTCCATGTTAG+AGG - chr2_3:20981969-20981988 None:intergenic 35.0%
ATAGGCGAGGTATAAAGAAA+AGG + chr2_3:20982222-20982241 Msa0283620:intron 35.0%
TAGGCGAGGTATAAAGAAAA+GGG + chr2_3:20982223-20982242 Msa0283620:intron 35.0%
ATTCCAATGAAGAATGTGGA+AGG + chr2_3:20982254-20982273 Msa0283620:CDS 35.0%
TTCCAATGAAGAATGTGGAA+GGG + chr2_3:20982255-20982274 Msa0283620:CDS 35.0%
GAATGAATACCTTGGATAAG+GGG - chr2_3:20982345-20982364 None:intergenic 35.0%
GAGAATGAATACCTTGGATA+AGG - chr2_3:20982347-20982366 None:intergenic 35.0%
CCCTAATATATTAGAGATCG+AGG + chr2_3:20982495-20982514 Msa0283620:intron 35.0%
!! CTTTCTACTTGTTTTCTTGC+TGG - chr2_3:20982699-20982718 None:intergenic 35.0%
ACAAGTAGAAAGAAACCACA+TGG + chr2_3:20982707-20982726 Msa0283620:CDS 35.0%
! TTCTGAGTCTTTGTTTGATG+CGG - chr2_3:20982820-20982839 None:intergenic 35.0%
GAAAATTCAATGATTGCCAC+CGG + chr2_3:20982897-20982916 Msa0283620:CDS 35.0%
TTTCATGCTTGATTCATAGC+TGG + chr2_3:20983371-20983390 Msa0283620:three_prime_UTR 35.0%
TTGTTTATTAGGGGAACGTC+CGG - chr2_3:20981665-20981684 None:intergenic 40.0%
!! CTCTAAAACTAGGAGCTTTG+TGG - chr2_3:20981728-20981747 None:intergenic 40.0%
!!! CACAAAGCTCCTAGTTTTAG+AGG + chr2_3:20981726-20981745 Msa0283620:five_prime_UTR 40.0%
CTATAGCTCGAAATTGACAG+TGG + chr2_3:20981890-20981909 Msa0283620:five_prime_UTR 40.0%
CACTCTCTTCTTCTGCTAAA+AGG + chr2_3:20981987-20982006 Msa0283620:CDS 40.0%
TATGGTCAAAAGCCCATCAA+AGG + chr2_3:20982317-20982336 Msa0283620:CDS 40.0%
GCGATGAAATATGTATGCTG+CGG + chr2_3:20982524-20982543 Msa0283620:intron 40.0%
!!! ATGGGGAAATTTTGGAACAG+AGG + chr2_3:20982642-20982661 Msa0283620:intron 40.0%
TATGTTACAAGGAGAACGGT+GGG - chr2_3:20982735-20982754 None:intergenic 40.0%
GGTGTATGTTACAAGGAGAA+CGG - chr2_3:20982739-20982758 None:intergenic 40.0%
!! TCTTGTTCTTGTTCTGGTTC+AGG - chr2_3:20982849-20982868 None:intergenic 40.0%
ACTTCCTTCTCCGAAAACAT+CGG - chr2_3:20982987-20983006 None:intergenic 40.0%
!! GAGAAGGAAGTGTCTATGTT+GGG + chr2_3:20982996-20983015 Msa0283620:CDS 40.0%
! GAGCAATTAGCTTCAACTAG+TGG - chr2_3:20983134-20983153 None:intergenic 40.0%
CAAACTAAACCCAACAAACC+CGG - chr2_3:20983192-20983211 None:intergenic 40.0%
ACAAGTGGGATATATGCAGT+TGG + chr2_3:20983235-20983254 Msa0283620:three_prime_UTR 40.0%
CAAGTGGGATATATGCAGTT+GGG + chr2_3:20983236-20983255 Msa0283620:three_prime_UTR 40.0%
TTGTTTATTAGGGGAACGTC+CGG - chr2_3:20981665-20981684 None:intergenic 40.0%
!! CTCTAAAACTAGGAGCTTTG+TGG - chr2_3:20981728-20981747 None:intergenic 40.0%
!!! CACAAAGCTCCTAGTTTTAG+AGG + chr2_3:20981726-20981745 Msa0283620:five_prime_UTR 40.0%
CTATAGCTCGAAATTGACAG+TGG + chr2_3:20981890-20981909 Msa0283620:five_prime_UTR 40.0%
CACTCTCTTCTTCTGCTAAA+AGG + chr2_3:20981987-20982006 Msa0283620:CDS 40.0%
TATGGTCAAAAGCCCATCAA+AGG + chr2_3:20982317-20982336 Msa0283620:CDS 40.0%
GCGATGAAATATGTATGCTG+CGG + chr2_3:20982524-20982543 Msa0283620:intron 40.0%
!!! ATGGGGAAATTTTGGAACAG+AGG + chr2_3:20982642-20982661 Msa0283620:intron 40.0%
TATGTTACAAGGAGAACGGT+GGG - chr2_3:20982735-20982754 None:intergenic 40.0%
GGTGTATGTTACAAGGAGAA+CGG - chr2_3:20982739-20982758 None:intergenic 40.0%
!! TCTTGTTCTTGTTCTGGTTC+AGG - chr2_3:20982849-20982868 None:intergenic 40.0%
ACTTCCTTCTCCGAAAACAT+CGG - chr2_3:20982987-20983006 None:intergenic 40.0%
!! GAGAAGGAAGTGTCTATGTT+GGG + chr2_3:20982996-20983015 Msa0283620:CDS 40.0%
! GAGCAATTAGCTTCAACTAG+TGG - chr2_3:20983134-20983153 None:intergenic 40.0%
CAAACTAAACCCAACAAACC+CGG - chr2_3:20983192-20983211 None:intergenic 40.0%
ACAAGTGGGATATATGCAGT+TGG + chr2_3:20983235-20983254 Msa0283620:three_prime_UTR 40.0%
CAAGTGGGATATATGCAGTT+GGG + chr2_3:20983236-20983255 Msa0283620:three_prime_UTR 40.0%
GCTTTGTGGAGACTTATTGG+TGG - chr2_3:20981714-20981733 None:intergenic 45.0%
! GGAGCTTTGTGGAGACTTAT+TGG - chr2_3:20981717-20981736 None:intergenic 45.0%
GTCCCTTCCACATTCTTCAT+TGG - chr2_3:20982260-20982279 None:intergenic 45.0%
TCATGGGCTTGGAGAAAGTA+TGG + chr2_3:20982299-20982318 Msa0283620:CDS 45.0%
GGATAAGGGGAACCTTTGAT+GGG - chr2_3:20982332-20982351 None:intergenic 45.0%
TGGATAAGGGGAACCTTTGA+TGG - chr2_3:20982333-20982352 None:intergenic 45.0%
TCAAAGGTTCCCCTTATCCA+AGG + chr2_3:20982333-20982352 Msa0283620:CDS 45.0%
GGGGATGAGAATGAATACCT+TGG - chr2_3:20982353-20982372 None:intergenic 45.0%
CAAAACTACGTGCAGTTCTG+CGG - chr2_3:20982591-20982610 None:intergenic 45.0%
ATGTTACAAGGAGAACGGTG+GGG - chr2_3:20982734-20982753 None:intergenic 45.0%
GTATGTTACAAGGAGAACGG+TGG - chr2_3:20982736-20982755 None:intergenic 45.0%
! GATCGGAGGTGTATGTTACA+AGG - chr2_3:20982746-20982765 None:intergenic 45.0%
TCGGGTTCTTGTTCTTGTTC+TGG - chr2_3:20982855-20982874 None:intergenic 45.0%
!! GTTGGAGTGTCCGATGTTTT+CGG + chr2_3:20982974-20982993 Msa0283620:CDS 45.0%
!! GGAGAAGGAAGTGTCTATGT+TGG + chr2_3:20982995-20983014 Msa0283620:CDS 45.0%
AGTGTCTATGTTGGGAGAAG+AGG + chr2_3:20983004-20983023 Msa0283620:CDS 45.0%
ATGTCGTTGTTTGCCGATCT+CGG + chr2_3:20983029-20983048 Msa0283620:CDS 45.0%
!! CGGGTTTGTTGGGTTTAGTT+TGG + chr2_3:20983190-20983209 Msa0283620:three_prime_UTR 45.0%
GCTTTGTGGAGACTTATTGG+TGG - chr2_3:20981714-20981733 None:intergenic 45.0%
! GGAGCTTTGTGGAGACTTAT+TGG - chr2_3:20981717-20981736 None:intergenic 45.0%
GTCCCTTCCACATTCTTCAT+TGG - chr2_3:20982260-20982279 None:intergenic 45.0%
TCATGGGCTTGGAGAAAGTA+TGG + chr2_3:20982299-20982318 Msa0283620:CDS 45.0%
GGATAAGGGGAACCTTTGAT+GGG - chr2_3:20982332-20982351 None:intergenic 45.0%
TGGATAAGGGGAACCTTTGA+TGG - chr2_3:20982333-20982352 None:intergenic 45.0%
TCAAAGGTTCCCCTTATCCA+AGG + chr2_3:20982333-20982352 Msa0283620:CDS 45.0%
GGGGATGAGAATGAATACCT+TGG - chr2_3:20982353-20982372 None:intergenic 45.0%
CAAAACTACGTGCAGTTCTG+CGG - chr2_3:20982591-20982610 None:intergenic 45.0%
ATGTTACAAGGAGAACGGTG+GGG - chr2_3:20982734-20982753 None:intergenic 45.0%
GTATGTTACAAGGAGAACGG+TGG - chr2_3:20982736-20982755 None:intergenic 45.0%
! GATCGGAGGTGTATGTTACA+AGG - chr2_3:20982746-20982765 None:intergenic 45.0%
TCGGGTTCTTGTTCTTGTTC+TGG - chr2_3:20982855-20982874 None:intergenic 45.0%
!! GTTGGAGTGTCCGATGTTTT+CGG + chr2_3:20982974-20982993 Msa0283620:CDS 45.0%
!! GGAGAAGGAAGTGTCTATGT+TGG + chr2_3:20982995-20983014 Msa0283620:CDS 45.0%
AGTGTCTATGTTGGGAGAAG+AGG + chr2_3:20983004-20983023 Msa0283620:CDS 45.0%
ATGTCGTTGTTTGCCGATCT+CGG + chr2_3:20983029-20983048 Msa0283620:CDS 45.0%
!! CGGGTTTGTTGGGTTTAGTT+TGG + chr2_3:20983190-20983209 Msa0283620:three_prime_UTR 45.0%
!!! TTTTTATTTTTTTAATTTTC+CGG + chr2_3:20983170-20983189 Msa0283620:three_prime_UTR 5.0%
!!! TTTTTATTTTTTTAATTTTC+CGG + chr2_3:20983170-20983189 Msa0283620:three_prime_UTR 5.0%
!! GGAGAGTGCCCTCTAAAACT+AGG - chr2_3:20981738-20981757 None:intergenic 50.0%
ACACTCCACCGTCTGATTCA+TGG + chr2_3:20982282-20982301 Msa0283620:CDS 50.0%
CACTCCACCGTCTGATTCAT+GGG + chr2_3:20982283-20982302 Msa0283620:CDS 50.0%
CTCCAAGCCCATGAATCAGA+CGG - chr2_3:20982293-20982312 None:intergenic 50.0%
!! GTAGTTTCTTGGTGGTGGCA+CGG - chr2_3:20982778-20982797 None:intergenic 50.0%
TTGCGGTAGTTTCTTGGTGG+TGG - chr2_3:20982783-20982802 None:intergenic 50.0%
GTGTTGCGGTAGTTTCTTGG+TGG - chr2_3:20982786-20982805 None:intergenic 50.0%
!! CTGGTGTTGCGGTAGTTTCT+TGG - chr2_3:20982789-20982808 None:intergenic 50.0%
!! GTTTGATGCGGTGTTGTTGC+TGG - chr2_3:20982808-20982827 None:intergenic 50.0%
ATTGCCACCGGTGATGAGTT+AGG + chr2_3:20982909-20982928 Msa0283620:CDS 50.0%
GATGAGTTAGGCGGATGGTT+TGG + chr2_3:20982921-20982940 Msa0283620:CDS 50.0%
TTTGGAGATGTGGAGGCGAT+CGG + chr2_3:20982939-20982958 Msa0283620:CDS 50.0%
! GTGTCCGATGTTTTCGGAGA+AGG + chr2_3:20982980-20982999 Msa0283620:CDS 50.0%
CAAAACACCGTCGAACACTC+CGG - chr2_3:20983062-20983081 None:intergenic 50.0%
!!! TGTTCGACGGTGTTTTGGAG+AGG + chr2_3:20983065-20983084 Msa0283620:CDS 50.0%
!! TTTTGGAGAGGTAGGAGGAG+TGG + chr2_3:20983077-20983096 Msa0283620:CDS 50.0%
TCCCACACTAACATCACCAC+CGG - chr2_3:20983111-20983130 None:intergenic 50.0%
!! GGAGAGTGCCCTCTAAAACT+AGG - chr2_3:20981738-20981757 None:intergenic 50.0%
ACACTCCACCGTCTGATTCA+TGG + chr2_3:20982282-20982301 Msa0283620:CDS 50.0%
CACTCCACCGTCTGATTCAT+GGG + chr2_3:20982283-20982302 Msa0283620:CDS 50.0%
CTCCAAGCCCATGAATCAGA+CGG - chr2_3:20982293-20982312 None:intergenic 50.0%
!! GTAGTTTCTTGGTGGTGGCA+CGG - chr2_3:20982778-20982797 None:intergenic 50.0%
TTGCGGTAGTTTCTTGGTGG+TGG - chr2_3:20982783-20982802 None:intergenic 50.0%
GTGTTGCGGTAGTTTCTTGG+TGG - chr2_3:20982786-20982805 None:intergenic 50.0%
!! CTGGTGTTGCGGTAGTTTCT+TGG - chr2_3:20982789-20982808 None:intergenic 50.0%
!! GTTTGATGCGGTGTTGTTGC+TGG - chr2_3:20982808-20982827 None:intergenic 50.0%
ATTGCCACCGGTGATGAGTT+AGG + chr2_3:20982909-20982928 Msa0283620:CDS 50.0%
GATGAGTTAGGCGGATGGTT+TGG + chr2_3:20982921-20982940 Msa0283620:CDS 50.0%
TTTGGAGATGTGGAGGCGAT+CGG + chr2_3:20982939-20982958 Msa0283620:CDS 50.0%
! GTGTCCGATGTTTTCGGAGA+AGG + chr2_3:20982980-20982999 Msa0283620:CDS 50.0%
CAAAACACCGTCGAACACTC+CGG - chr2_3:20983062-20983081 None:intergenic 50.0%
!!! TGTTCGACGGTGTTTTGGAG+AGG + chr2_3:20983065-20983084 Msa0283620:CDS 50.0%
!! TTTTGGAGAGGTAGGAGGAG+TGG + chr2_3:20983077-20983096 Msa0283620:CDS 50.0%
TCCCACACTAACATCACCAC+CGG - chr2_3:20983111-20983130 None:intergenic 50.0%
CAAGCCCATGAATCAGACGG+TGG - chr2_3:20982290-20982309 None:intergenic 55.0%
CACCGTCTGATTCATGGGCT+TGG + chr2_3:20982288-20982307 Msa0283620:CDS 55.0%
!! CGGTGTTGTTGCTGGTGTTG+CGG - chr2_3:20982800-20982819 None:intergenic 55.0%
CCATCCGCCTAACTCATCAC+CGG - chr2_3:20982919-20982938 None:intergenic 55.0%
! AGGCGGATGGTTTGGAGATG+TGG + chr2_3:20982929-20982948 Msa0283620:CDS 55.0%
! CGGATGGTTTGGAGATGTGG+AGG + chr2_3:20982932-20982951 Msa0283620:CDS 55.0%
ATCGGACACTCCAACACTGC+CGG - chr2_3:20982969-20982988 None:intergenic 55.0%
! AGAGTTGCCGGAGTGTTCGA+CGG + chr2_3:20983052-20983071 Msa0283620:CDS 55.0%
!! CGGAGTGTTCGACGGTGTTT+TGG + chr2_3:20983060-20983079 Msa0283620:CDS 55.0%
!!! CGACGGTGTTTTGGAGAGGT+AGG + chr2_3:20983069-20983088 Msa0283620:CDS 55.0%
!!! CGGTGTTTTGGAGAGGTAGG+AGG + chr2_3:20983072-20983091 Msa0283620:CDS 55.0%
! GCCGGTGGTGATGTTAGTGT+GGG + chr2_3:20983107-20983126 Msa0283620:CDS 55.0%
CAAGCCCATGAATCAGACGG+TGG - chr2_3:20982290-20982309 None:intergenic 55.0%
CACCGTCTGATTCATGGGCT+TGG + chr2_3:20982288-20982307 Msa0283620:CDS 55.0%
!! CGGTGTTGTTGCTGGTGTTG+CGG - chr2_3:20982800-20982819 None:intergenic 55.0%
CCATCCGCCTAACTCATCAC+CGG - chr2_3:20982919-20982938 None:intergenic 55.0%
! AGGCGGATGGTTTGGAGATG+TGG + chr2_3:20982929-20982948 Msa0283620:CDS 55.0%
! CGGATGGTTTGGAGATGTGG+AGG + chr2_3:20982932-20982951 Msa0283620:CDS 55.0%
ATCGGACACTCCAACACTGC+CGG - chr2_3:20982969-20982988 None:intergenic 55.0%
! AGAGTTGCCGGAGTGTTCGA+CGG + chr2_3:20983052-20983071 Msa0283620:CDS 55.0%
!! CGGAGTGTTCGACGGTGTTT+TGG + chr2_3:20983060-20983079 Msa0283620:CDS 55.0%
!!! CGACGGTGTTTTGGAGAGGT+AGG + chr2_3:20983069-20983088 Msa0283620:CDS 55.0%
!!! CGGTGTTTTGGAGAGGTAGG+AGG + chr2_3:20983072-20983091 Msa0283620:CDS 55.0%
! GCCGGTGGTGATGTTAGTGT+GGG + chr2_3:20983107-20983126 Msa0283620:CDS 55.0%
TGGCACGGCGTGGTTGTGAT+CGG - chr2_3:20982763-20982782 None:intergenic 60.0%
GCCACCGGTGATGAGTTAGG+CGG + chr2_3:20982912-20982931 Msa0283620:CDS 60.0%
TCCGCCTAACTCATCACCGG+TGG - chr2_3:20982916-20982935 None:intergenic 60.0%
CCGGTGATGAGTTAGGCGGA+TGG + chr2_3:20982916-20982935 Msa0283620:CDS 60.0%
TGCCGATCTCGGAGAGTTGC+CGG + chr2_3:20983040-20983059 Msa0283620:CDS 60.0%
CTCCGGCAACTCTCCGAGAT+CGG - chr2_3:20983045-20983064 None:intergenic 60.0%
AGAGGTAGGAGGAGTGGTGC+CGG + chr2_3:20983083-20983102 Msa0283620:CDS 60.0%
ACTAACATCACCACCGGCGC+CGG - chr2_3:20983105-20983124 None:intergenic 60.0%
! CGCCGGTGGTGATGTTAGTG+TGG + chr2_3:20983106-20983125 Msa0283620:CDS 60.0%
TGGCACGGCGTGGTTGTGAT+CGG - chr2_3:20982763-20982782 None:intergenic 60.0%
GCCACCGGTGATGAGTTAGG+CGG + chr2_3:20982912-20982931 Msa0283620:CDS 60.0%
TCCGCCTAACTCATCACCGG+TGG - chr2_3:20982916-20982935 None:intergenic 60.0%
CCGGTGATGAGTTAGGCGGA+TGG + chr2_3:20982916-20982935 Msa0283620:CDS 60.0%
TGCCGATCTCGGAGAGTTGC+CGG + chr2_3:20983040-20983059 Msa0283620:CDS 60.0%
CTCCGGCAACTCTCCGAGAT+CGG - chr2_3:20983045-20983064 None:intergenic 60.0%
AGAGGTAGGAGGAGTGGTGC+CGG + chr2_3:20983083-20983102 Msa0283620:CDS 60.0%
ACTAACATCACCACCGGCGC+CGG - chr2_3:20983105-20983124 None:intergenic 60.0%
! CGCCGGTGGTGATGTTAGTG+TGG + chr2_3:20983106-20983125 Msa0283620:CDS 60.0%
GGAGAACGGTGGGGTCCATG+TGG - chr2_3:20982725-20982744 None:intergenic 65.0%
CACGGCGTGGTTGTGATCGG+AGG - chr2_3:20982760-20982779 None:intergenic 65.0%
!! TTCTTGGTGGTGGCACGGCG+TGG - chr2_3:20982773-20982792 None:intergenic 65.0%
TGTGGAGGCGATCGGATCGC+CGG + chr2_3:20982947-20982966 Msa0283620:CDS 65.0%
GATCGGATCGCCGGCAGTGT+TGG + chr2_3:20982956-20982975 Msa0283620:CDS 65.0%
GGAGAACGGTGGGGTCCATG+TGG - chr2_3:20982725-20982744 None:intergenic 65.0%
CACGGCGTGGTTGTGATCGG+AGG - chr2_3:20982760-20982779 None:intergenic 65.0%
!! TTCTTGGTGGTGGCACGGCG+TGG - chr2_3:20982773-20982792 None:intergenic 65.0%
TGTGGAGGCGATCGGATCGC+CGG + chr2_3:20982947-20982966 Msa0283620:CDS 65.0%
GATCGGATCGCCGGCAGTGT+TGG + chr2_3:20982956-20982975 Msa0283620:CDS 65.0%
!! AGGAGGAGTGGTGCCGGCGC+CGG + chr2_3:20983089-20983108 Msa0283620:CDS 75.0%
!! AGGAGGAGTGGTGCCGGCGC+CGG + chr2_3:20983089-20983108 Msa0283620:CDS 75.0%
!!! AGGAGTGGTGCCGGCGCCGG+TGG + chr2_3:20983092-20983111 Msa0283620:CDS 80.0%
!!! AGGAGTGGTGCCGGCGCCGG+TGG + chr2_3:20983092-20983111 Msa0283620:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 20981657 20983438 20981657 ID=Msa0283620;Name=Msa0283620
chr2_3 mRNA 20981657 20983438 20981657 ID=Msa0283620-mRNA-1;Parent=Msa0283620;Name=Msa0283620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=317|1|1|1|1|1|3|278|220
chr2_3 exon 20981657 20982008 20981657 ID=Msa0283620-mRNA-1:exon:8276;Parent=Msa0283620-mRNA-1
chr2_3 exon 20982226 20982354 20982226 ID=Msa0283620-mRNA-1:exon:8277;Parent=Msa0283620-mRNA-1
chr2_3 exon 20982662 20983438 20982662 ID=Msa0283620-mRNA-1:exon:8278;Parent=Msa0283620-mRNA-1
chr2_3 five_prime_UTR 20981657 20981973 20981657 ID=Msa0283620-mRNA-1:five_prime_utr;Parent=Msa0283620-mRNA-1
chr2_3 CDS 20981974 20982008 20981974 ID=Msa0283620-mRNA-1:cds;Parent=Msa0283620-mRNA-1
chr2_3 CDS 20982226 20982354 20982226 ID=Msa0283620-mRNA-1:cds;Parent=Msa0283620-mRNA-1
chr2_3 CDS 20982662 20983160 20982662 ID=Msa0283620-mRNA-1:cds;Parent=Msa0283620-mRNA-1
chr2_3 three_prime_UTR 20983161 20983438 20983161 ID=Msa0283620-mRNA-1:three_prime_utr;Parent=Msa0283620-mRNA-1
Gene Sequence

>Msa0283620

ATGGAAAGATCATCACTCTCTTCTTCTGCTAAAAGGCGAGGTATAAAGAAAAGGGTAGTAGAAATTCCAATGAAGAATGTGGAAGGGACTAACACTCCACCGTCTGATTCATGGGCTTGGAGAAAGTATGGTCAAAAGCCCATCAAAGGTTCCCCTTATCCAAGAGGATACTATAGATGTAGCAGTTCAAAGAATTGTCCAGCAAGAAAACAAGTAGAAAGAAACCACATGGACCCCACCGTTCTCCTTGTAACATACACCTCCGATCACAACCACGCCGTGCCACCACCAAGAAACTACCGCAACACCAGCAACAACACCGCATCAAACAAAGACTCAGAATCAGAACCTGAACCAGAACAAGAACAAGAACCCGATGAAACGTTTACGAATATCGAAGAAAATTCAATGATTGCCACCGGTGATGAGTTAGGCGGATGGTTTGGAGATGTGGAGGCGATCGGATCGCCGGCAGTGTTGGAGTGTCCGATGTTTTCGGAGAAGGAAGTGTCTATGTTGGGAGAAGAGGAGATGTCGTTGTTTGCCGATCTCGGAGAGTTGCCGGAGTGTTCGACGGTGTTTTGGAGAGGTAGGAGGAGTGGTGCCGGCGCCGGTGGTGATGTTAGTGTGGGACCACTAGTTGAAGCTAATTGCTCGTTGTGA
Protein sequence

>Msa0283620

MERSSLSSSAKRRGIKKRVVEIPMKNVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKNCPARKQVERNHMDPTVLLVTYTSDHNHAVPPPRNYRNTSNNTASNKDSESEPEPEQEQEPDETFTNIEENSMIATGDELGGWFGDVEAIGSPAVLECPMFSEKEVSMLGEEEMSLFADLGELPECSTVFWRGRRSGAGAGGDVSVGPLVEANCSL*