Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228530 | XP_003608847.1 | 85.714 | 140 | 4 | 1 | 1 | 124 | 1 | 140 | 7.51e-71 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228530 | sp|Q8RYJ8|CML19_ORYSJ | 46.479 | 142 | 56 | 3 | 3 | 124 | 4 | 145 | 1.55e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228530 | G7JLF5 | 85.714 | 140 | 4 | 1 | 1 | 124 | 1 | 140 | 3.59e-71 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071480 | Msa0228530 | 0.804076 | 2.569028e-49 | -8.615850e-47 |
| Msa0078150 | Msa0228530 | 0.801128 | 1.042020e-48 | -8.615850e-47 |
| Msa0119440 | Msa0228530 | 0.803264 | 3.788123e-49 | -8.615850e-47 |
| Msa0228530 | Msa0305620 | 0.805064 | 1.598876e-49 | -8.615850e-47 |
| Msa0228530 | Msa0437070 | 0.811001 | 8.710420e-51 | -8.615850e-47 |
| Msa0228530 | Msa0482280 | 0.934792 | 2.330391e-96 | -8.615850e-47 |
| Msa0228530 | Msa0748660 | 0.822176 | 2.724403e-53 | -8.615850e-47 |
| Msa0228530 | Msa0968050 | 0.807052 | 6.101979e-50 | -8.615850e-47 |
| Msa0228530 | Msa1078330 | 0.805878 | 1.079337e-49 | -8.615850e-47 |
| Msa0228530 | Msa1123720 | 0.803517 | 3.356437e-49 | -8.615850e-47 |
| Msa0228530 | Msa1238680 | 0.812489 | 4.131838e-51 | -8.615850e-47 |
| Msa0228530 | Msa1258470 | 0.978970 | 5.934823e-147 | -8.615850e-47 |
| Msa0228530 | Msa1258670 | 0.927982 | 5.490383e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228530 | MtrunA17_Chr4g0057641 | 85.714 | 140 | 4 | 1 | 1 | 124 | 1 | 140 | 6.91e-75 | 218 |
| Msa0228530 | MtrunA17_Chr4g0057661 | 83.571 | 140 | 7 | 1 | 1 | 124 | 1 | 140 | 6.55e-73 | 213 |
| Msa0228530 | MtrunA17_Chr4g0057651 | 82.857 | 140 | 8 | 1 | 1 | 124 | 1 | 140 | 1.34e-71 | 210 |
| Msa0228530 | MtrunA17_Chr3g0116151 | 63.571 | 140 | 35 | 1 | 1 | 124 | 1 | 140 | 1.21e-52 | 162 |
| Msa0228530 | MtrunA17_Chr3g0116141 | 64.234 | 137 | 33 | 1 | 4 | 124 | 3 | 139 | 3.32e-52 | 161 |
| Msa0228530 | MtrunA17_Chr6g0459231 | 50.000 | 134 | 51 | 1 | 6 | 123 | 8 | 141 | 3.59e-40 | 130 |
| Msa0228530 | MtrunA17_Chr7g0225921 | 49.630 | 135 | 51 | 2 | 6 | 123 | 6 | 140 | 9.03e-39 | 127 |
| Msa0228530 | MtrunA17_Chr8g0373691 | 48.092 | 131 | 51 | 1 | 10 | 123 | 57 | 187 | 1.47e-29 | 105 |
| Msa0228530 | MtrunA17_Chr3g0111371 | 38.060 | 134 | 64 | 2 | 6 | 123 | 5 | 135 | 5.13e-23 | 87.0 |
| Msa0228530 | MtrunA17_Chr8g0392951 | 35.556 | 135 | 71 | 1 | 6 | 124 | 24 | 158 | 1.54e-20 | 81.6 |
| Msa0228530 | MtrunA17_Chr5g0434951 | 35.075 | 134 | 71 | 1 | 6 | 123 | 4 | 137 | 4.17e-20 | 79.7 |
| Msa0228530 | MtrunA17_Chr8g0391691 | 38.636 | 132 | 64 | 2 | 6 | 120 | 36 | 167 | 9.14e-20 | 80.1 |
| Msa0228530 | MtrunA17_Chr1g0161211 | 37.778 | 135 | 67 | 2 | 6 | 123 | 46 | 180 | 1.49e-18 | 77.0 |
| Msa0228530 | MtrunA17_Chr4g0033601 | 34.058 | 138 | 72 | 3 | 6 | 124 | 5 | 142 | 1.36e-16 | 70.9 |
| Msa0228530 | MtrunA17_Chr1g0169581 | 29.197 | 137 | 78 | 2 | 6 | 123 | 4 | 140 | 1.52e-16 | 70.9 |
| Msa0228530 | MtrunA17_Chr6g0482731 | 33.333 | 135 | 73 | 2 | 6 | 123 | 26 | 160 | 2.89e-15 | 68.2 |
| Msa0228530 | MtrunA17_Chr1g0169621 | 27.778 | 162 | 73 | 3 | 6 | 123 | 4 | 165 | 8.31e-15 | 66.6 |
| Msa0228530 | MtrunA17_Chr7g0245911 | 33.333 | 150 | 74 | 4 | 1 | 124 | 42 | 191 | 1.12e-14 | 67.0 |
| Msa0228530 | MtrunA17_Chr4g0044961 | 32.090 | 134 | 74 | 2 | 6 | 123 | 57 | 189 | 1.07e-13 | 64.3 |
| Msa0228530 | MtrunA17_Chr7g0256701 | 29.932 | 147 | 73 | 5 | 4 | 124 | 71 | 213 | 6.54e-13 | 62.8 |
| Msa0228530 | MtrunA17_Chr6g0460211 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 1.47e-12 | 60.5 |
| Msa0228530 | MtrunA17_Chr5g0440931 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 1.51e-12 | 60.5 |
| Msa0228530 | MtrunA17_Chr7g0254731 | 31.429 | 140 | 70 | 4 | 6 | 123 | 12 | 147 | 1.74e-12 | 60.5 |
| Msa0228530 | MtrunA17_Chr3g0093271 | 32.143 | 140 | 69 | 4 | 6 | 123 | 63 | 198 | 3.84e-12 | 60.5 |
| Msa0228530 | MtrunA17_Chr3g0121191 | 31.034 | 145 | 53 | 2 | 6 | 123 | 93 | 217 | 4.71e-12 | 60.5 |
| Msa0228530 | MtrunA17_Chr1g0188171 | 32.143 | 140 | 70 | 3 | 5 | 123 | 11 | 146 | 9.35e-12 | 58.5 |
| Msa0228530 | MtrunA17_Chr5g0402331 | 29.630 | 135 | 78 | 2 | 6 | 123 | 48 | 182 | 1.90e-11 | 58.2 |
| Msa0228530 | MtrunA17_Chr7g0256171 | 30.435 | 138 | 77 | 3 | 6 | 124 | 5 | 142 | 5.53e-11 | 56.6 |
| Msa0228530 | MtrunA17_Chr5g0402361 | 29.630 | 135 | 78 | 2 | 6 | 123 | 220 | 354 | 5.78e-11 | 58.2 |
| Msa0228530 | MtrunA17_Chr1g0166281 | 31.618 | 136 | 76 | 2 | 5 | 123 | 11 | 146 | 8.68e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228530 | AT1G76650.1 | 41.912 | 136 | 63 | 1 | 4 | 123 | 41 | 176 | 4.20e-28 | 101 |
| Msa0228530 | AT1G76650.3 | 41.912 | 136 | 63 | 1 | 4 | 123 | 41 | 176 | 4.20e-28 | 101 |
| Msa0228530 | AT5G42380.1 | 41.176 | 136 | 62 | 2 | 6 | 123 | 49 | 184 | 1.19e-24 | 93.2 |
| Msa0228530 | AT1G76650.2 | 40.441 | 136 | 55 | 2 | 4 | 123 | 41 | 166 | 2.87e-24 | 91.7 |
| Msa0228530 | AT1G76640.1 | 38.849 | 139 | 66 | 2 | 4 | 123 | 20 | 158 | 4.18e-24 | 90.9 |
| Msa0228530 | AT1G24620.1 | 40.741 | 135 | 63 | 2 | 6 | 123 | 37 | 171 | 4.39e-23 | 89.0 |
| Msa0228530 | AT3G50770.1 | 39.161 | 143 | 65 | 2 | 3 | 123 | 61 | 203 | 5.46e-23 | 89.4 |
| Msa0228530 | AT3G01830.1 | 36.765 | 136 | 69 | 3 | 6 | 124 | 11 | 146 | 1.13e-19 | 79.3 |
| Msa0228530 | AT1G73630.1 | 33.577 | 137 | 72 | 2 | 3 | 123 | 17 | 150 | 9.31e-19 | 77.4 |
| Msa0228530 | AT1G18210.2 | 33.824 | 136 | 77 | 1 | 1 | 123 | 18 | 153 | 1.67e-18 | 76.6 |
| Msa0228530 | AT1G18210.1 | 33.824 | 136 | 77 | 1 | 1 | 123 | 18 | 153 | 1.67e-18 | 76.6 |
| Msa0228530 | AT5G37770.1 | 30.935 | 139 | 75 | 2 | 6 | 123 | 17 | 155 | 1.37e-17 | 74.3 |
| Msa0228530 | AT5G37770.2 | 30.935 | 139 | 75 | 2 | 6 | 123 | 17 | 155 | 1.37e-17 | 74.3 |
| Msa0228530 | AT1G66400.1 | 29.927 | 137 | 77 | 2 | 6 | 123 | 15 | 151 | 1.62e-17 | 73.9 |
| Msa0228530 | AT2G15680.1 | 34.815 | 135 | 69 | 3 | 6 | 123 | 50 | 182 | 1.28e-14 | 67.0 |
| Msa0228530 | AT4G03290.1 | 33.333 | 141 | 72 | 3 | 6 | 124 | 5 | 145 | 7.86e-14 | 64.3 |
| Msa0228530 | AT5G17470.1 | 31.618 | 136 | 70 | 3 | 7 | 123 | 7 | 138 | 2.23e-13 | 62.8 |
| Msa0228530 | AT1G66410.1 | 32.624 | 141 | 67 | 4 | 6 | 123 | 12 | 147 | 8.21e-13 | 61.6 |
| Msa0228530 | AT5G37780.1 | 32.624 | 141 | 67 | 4 | 6 | 123 | 12 | 147 | 8.21e-13 | 61.6 |
| Msa0228530 | AT4G12860.1 | 30.935 | 139 | 73 | 2 | 6 | 123 | 5 | 141 | 8.61e-13 | 61.6 |
| Msa0228530 | AT3G59440.1 | 30.714 | 140 | 79 | 2 | 3 | 124 | 48 | 187 | 8.68e-13 | 62.4 |
| Msa0228530 | AT1G05990.1 | 32.374 | 139 | 74 | 3 | 6 | 124 | 5 | 143 | 8.83e-13 | 61.6 |
| Msa0228530 | AT5G21274.1 | 32.857 | 140 | 68 | 4 | 6 | 123 | 12 | 147 | 9.73e-13 | 61.2 |
| Msa0228530 | AT3G56800.1 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 1.50e-12 | 60.8 |
| Msa0228530 | AT2G41110.1 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 1.50e-12 | 60.8 |
| Msa0228530 | AT2G27030.1 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 1.50e-12 | 60.8 |
| Msa0228530 | AT3G22930.1 | 32.117 | 137 | 75 | 3 | 5 | 123 | 34 | 170 | 1.94e-12 | 61.2 |
| Msa0228530 | AT3G43810.1 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 2.02e-12 | 60.5 |
| Msa0228530 | AT2G27030.3 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 2.73e-12 | 60.8 |
| Msa0228530 | AT3G43810.2 | 32.143 | 140 | 69 | 4 | 6 | 123 | 12 | 147 | 3.59e-12 | 60.8 |
| Msa0228530 | AT3G07490.1 | 32.609 | 138 | 74 | 3 | 6 | 124 | 5 | 142 | 3.83e-12 | 59.7 |
| Msa0228530 | AT3G10190.1 | 28.571 | 140 | 82 | 3 | 3 | 124 | 67 | 206 | 7.97e-12 | 60.1 |
| Msa0228530 | AT2G36180.1 | 30.597 | 134 | 73 | 3 | 10 | 123 | 4 | 137 | 1.90e-11 | 57.8 |
| Msa0228530 | AT2G43290.1 | 29.371 | 143 | 77 | 3 | 6 | 124 | 65 | 207 | 1.93e-11 | 58.9 |
| Msa0228530 | AT4G14640.1 | 32.374 | 139 | 69 | 3 | 6 | 123 | 13 | 147 | 4.07e-11 | 57.0 |
Find 41 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCGTGTTAAGTAAATTTC+TGG | 0.177720 | 2_1:+81782001 | None:intergenic |
| GGAGGATTTAATAACGCTTA+TGG | 0.268235 | 2_1:-81781546 | Msa0228530:CDS |
| TTAGGCCTATAGCGGTTTAT+AGG | 0.314273 | 2_1:+81781901 | None:intergenic |
| TGAATTTAACTTTGTATAGT+TGG | 0.323358 | 2_1:-81781808 | Msa0228530:five_prime_UTR |
| CATCACTTTACATTCTTCAA+TGG | 0.327118 | 2_1:+81781394 | None:intergenic |
| GATGATTGGAAGGTTTGATT+TGG | 0.354750 | 2_1:-81781375 | Msa0228530:CDS |
| TTAATAACGCTTATGGAATC+CGG | 0.394530 | 2_1:-81781539 | Msa0228530:CDS |
| AGATTTCACCGAACGAGTTA+AGG | 0.395728 | 2_1:-81781664 | Msa0228530:CDS |
| AAGAAAAGTTGAAGGATTTG+AGG | 0.418092 | 2_1:-81781508 | Msa0228530:CDS |
| TAACTCCTATAAACCGCTAT+AGG | 0.418927 | 2_1:-81781906 | Msa0228530:five_prime_UTR |
| GGAAATTGCTATTGAGGCAT+TGG | 0.422915 | 2_1:-81781597 | Msa0228530:CDS |
| TGGTGATGGGCTATTGAGTT+TGG | 0.423743 | 2_1:-81781567 | Msa0228530:CDS |
| AGAAAAGTTGAAGGATTTGA+GGG | 0.426919 | 2_1:-81781507 | Msa0228530:CDS |
| TGTGTTGGCTATGAAACAAT+TGG | 0.433319 | 2_1:+81781944 | None:intergenic |
| AGGAGTCGAATGACGAAGAT+TGG | 0.473202 | 2_1:-81781644 | Msa0228530:CDS |
| ATTCGACTCCTTAACTCGTT+CGG | 0.474759 | 2_1:+81781656 | None:intergenic |
| GAAGAATGTAAAGTGATGAT+TGG | 0.486801 | 2_1:-81781389 | Msa0228530:CDS |
| ATCAATGAAATCAAACAGTT+AGG | 0.489044 | 2_1:+81781883 | None:intergenic |
| TAATAACGCTTATGGAATCC+GGG | 0.494077 | 2_1:-81781538 | Msa0228530:CDS |
| AGAAGTGGAAATTGCTATTG+AGG | 0.499700 | 2_1:-81781603 | Msa0228530:CDS |
| TATATATTGTTCGCAATCAA+AGG | 0.500104 | 2_1:+81781754 | None:intergenic |
| AATGTAAAGTGATGATTGGA+AGG | 0.500397 | 2_1:-81781385 | Msa0228530:CDS |
| AGAGTTTCAATTGAAAGAAG+TGG | 0.502556 | 2_1:-81781618 | Msa0228530:CDS |
| TGAAGAATTCAGAATCATGA+TGG | 0.506151 | 2_1:-81781330 | Msa0228530:CDS |
| AGGTTTGATTTGGATGGTGA+TGG | 0.507936 | 2_1:-81781365 | Msa0228530:CDS |
| ATTGGAAGGTTTGATTTGGA+TGG | 0.510943 | 2_1:-81781371 | Msa0228530:CDS |
| TGATGGGCTATTGAGTTTGG+AGG | 0.520299 | 2_1:-81781564 | Msa0228530:CDS |
| GTGTTGGCTATGAAACAATT+GGG | 0.522846 | 2_1:+81781945 | None:intergenic |
| GCATTGGATTCTGATGGTGA+TGG | 0.540839 | 2_1:-81781581 | Msa0228530:CDS |
| TACTTTGATGAAGACGGTGA+TGG | 0.542295 | 2_1:-81781689 | Msa0228530:CDS |
| GGGAGAAGAAGAAAAGTTGA+AGG | 0.545380 | 2_1:-81781516 | Msa0228530:CDS |
| CTAAGTTACTTTGATGAAGA+CGG | 0.574980 | 2_1:-81781695 | Msa0228530:CDS |
| AGTCGAATGACGAAGATTGG+CGG | 0.582253 | 2_1:-81781641 | Msa0228530:CDS |
| CATTGGATTCTGATGGTGAT+GGG | 0.600002 | 2_1:-81781580 | Msa0228530:CDS |
| AATTAACATGAGGAGTAACA+TGG | 0.611175 | 2_1:-81781732 | Msa0228530:exon |
| ATTGAGGCATTGGATTCTGA+TGG | 0.616237 | 2_1:-81781587 | Msa0228530:CDS |
| TCAAACAGTTAGGCCTATAG+CGG | 0.631415 | 2_1:+81781893 | None:intergenic |
| AATAACGCTTATGGAATCCG+GGG | 0.638897 | 2_1:-81781537 | Msa0228530:CDS |
| AACAATATATAATTAACATG+AGG | 0.645774 | 2_1:-81781742 | Msa0228530:exon |
| TTGGCTATGAAACAATTGGG+TGG | 0.680772 | 2_1:+81781948 | None:intergenic |
| ATAACGCTTATGGAATCCGG+GGG | 0.690847 | 2_1:-81781536 | Msa0228530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATATATAATTAACATG+AGG | - | chr2_1:81781601-81781620 | Msa0228530:CDS | 15.0% |
| !!! | TGAATTTAACTTTGTATAGT+TGG | - | chr2_1:81781535-81781554 | Msa0228530:CDS | 20.0% |
| !!! | TTTGAAATGTATGATAATGA+AGG | - | chr2_1:81781864-81781883 | Msa0228530:five_prime_UTR | 20.0% |
| ! | ATCAATGAAATCAAACAGTT+AGG | + | chr2_1:81781463-81781482 | None:intergenic | 25.0% |
| ! | TATATATTGTTCGCAATCAA+AGG | + | chr2_1:81781592-81781611 | None:intergenic | 25.0% |
| AAGCGTGTTAAGTAAATTTC+TGG | + | chr2_1:81781345-81781364 | None:intergenic | 30.0% | |
| AATTAACATGAGGAGTAACA+TGG | - | chr2_1:81781611-81781630 | Msa0228530:CDS | 30.0% | |
| ! | CTAAGTTACTTTGATGAAGA+CGG | - | chr2_1:81781648-81781667 | Msa0228530:CDS | 30.0% |
| AGAGTTTCAATTGAAAGAAG+TGG | - | chr2_1:81781725-81781744 | Msa0228530:CDS | 30.0% | |
| TTAATAACGCTTATGGAATC+CGG | - | chr2_1:81781804-81781823 | Msa0228530:five_prime_UTR | 30.0% | |
| AAGAAAAGTTGAAGGATTTG+AGG | - | chr2_1:81781835-81781854 | Msa0228530:five_prime_UTR | 30.0% | |
| AGAAAAGTTGAAGGATTTGA+GGG | - | chr2_1:81781836-81781855 | Msa0228530:five_prime_UTR | 30.0% | |
| ! | ATGTATGATAATGAAGGATG+TGG | - | chr2_1:81781870-81781889 | Msa0228530:five_prime_UTR | 30.0% |
| ! | TGTATGATAATGAAGGATGT+GGG | - | chr2_1:81781871-81781890 | Msa0228530:five_prime_UTR | 30.0% |
| AAGAGGATGTTGAAAAAGTT+GGG | - | chr2_1:81781915-81781934 | Msa0228530:five_prime_UTR | 30.0% | |
| CATCACTTTACATTCTTCAA+TGG | + | chr2_1:81781952-81781971 | None:intergenic | 30.0% | |
| GAAGAATGTAAAGTGATGAT+TGG | - | chr2_1:81781954-81781973 | Msa0228530:five_prime_UTR | 30.0% | |
| AATGTAAAGTGATGATTGGA+AGG | - | chr2_1:81781958-81781977 | Msa0228530:five_prime_UTR | 30.0% | |
| TGAAGAATTCAGAATCATGA+TGG | - | chr2_1:81782013-81782032 | Msa0228530:five_prime_UTR | 30.0% | |
| !! | GTGTTGGCTATGAAACAATT+GGG | + | chr2_1:81781401-81781420 | None:intergenic | 35.0% |
| !! | TGTGTTGGCTATGAAACAAT+TGG | + | chr2_1:81781402-81781421 | None:intergenic | 35.0% |
| !!! | TGCACACACTTATTTTGTGT+TGG | + | chr2_1:81781417-81781436 | None:intergenic | 35.0% |
| TAACTCCTATAAACCGCTAT+AGG | - | chr2_1:81781437-81781456 | Msa0228530:intron | 35.0% | |
| ! | AGAAGTGGAAATTGCTATTG+AGG | - | chr2_1:81781740-81781759 | Msa0228530:exon | 35.0% |
| GGAGGATTTAATAACGCTTA+TGG | - | chr2_1:81781797-81781816 | Msa0228530:five_prime_UTR | 35.0% | |
| TAATAACGCTTATGGAATCC+GGG | - | chr2_1:81781805-81781824 | Msa0228530:five_prime_UTR | 35.0% | |
| TAACACCAAAGAGTTTGAAG+AGG | - | chr2_1:81781898-81781917 | Msa0228530:five_prime_UTR | 35.0% | |
| AACATCCTCTTCAAACTCTT+TGG | + | chr2_1:81781906-81781925 | None:intergenic | 35.0% | |
| GAAGAGGATGTTGAAAAAGT+TGG | - | chr2_1:81781914-81781933 | Msa0228530:five_prime_UTR | 35.0% | |
| AGAGGATGTTGAAAAAGTTG+GGG | - | chr2_1:81781916-81781935 | Msa0228530:five_prime_UTR | 35.0% | |
| GATGATTGGAAGGTTTGATT+TGG | - | chr2_1:81781968-81781987 | Msa0228530:five_prime_UTR | 35.0% | |
| !! | ATTGGAAGGTTTGATTTGGA+TGG | - | chr2_1:81781972-81781991 | Msa0228530:five_prime_UTR | 35.0% |
| TTGGCTATGAAACAATTGGG+TGG | + | chr2_1:81781398-81781417 | None:intergenic | 40.0% | |
| TTAGGCCTATAGCGGTTTAT+AGG | + | chr2_1:81781445-81781464 | None:intergenic | 40.0% | |
| TCAAACAGTTAGGCCTATAG+CGG | + | chr2_1:81781453-81781472 | None:intergenic | 40.0% | |
| TACTTTGATGAAGACGGTGA+TGG | - | chr2_1:81781654-81781673 | Msa0228530:CDS | 40.0% | |
| AGATTTCACCGAACGAGTTA+AGG | - | chr2_1:81781679-81781698 | Msa0228530:CDS | 40.0% | |
| ATTCGACTCCTTAACTCGTT+CGG | + | chr2_1:81781690-81781709 | None:intergenic | 40.0% | |
| ! | GGAAATTGCTATTGAGGCAT+TGG | - | chr2_1:81781746-81781765 | Msa0228530:exon | 40.0% |
| !! | ATTGAGGCATTGGATTCTGA+TGG | - | chr2_1:81781756-81781775 | Msa0228530:five_prime_UTR | 40.0% |
| ! | CATTGGATTCTGATGGTGAT+GGG | - | chr2_1:81781763-81781782 | Msa0228530:five_prime_UTR | 40.0% |
| AATAACGCTTATGGAATCCG+GGG | - | chr2_1:81781806-81781825 | Msa0228530:five_prime_UTR | 40.0% | |
| GGGAGAAGAAGAAAAGTTGA+AGG | - | chr2_1:81781827-81781846 | Msa0228530:five_prime_UTR | 40.0% | |
| GAGGATGTTGAAAAAGTTGG+GGG | - | chr2_1:81781917-81781936 | Msa0228530:five_prime_UTR | 40.0% | |
| !! | AGGTTTGATTTGGATGGTGA+TGG | - | chr2_1:81781978-81781997 | Msa0228530:five_prime_UTR | 40.0% |
| AGGAGTCGAATGACGAAGAT+TGG | - | chr2_1:81781699-81781718 | Msa0228530:CDS | 45.0% | |
| AGTCGAATGACGAAGATTGG+CGG | - | chr2_1:81781702-81781721 | Msa0228530:CDS | 45.0% | |
| ! | GCATTGGATTCTGATGGTGA+TGG | - | chr2_1:81781762-81781781 | Msa0228530:five_prime_UTR | 45.0% |
| !! | TGGTGATGGGCTATTGAGTT+TGG | - | chr2_1:81781776-81781795 | Msa0228530:five_prime_UTR | 45.0% |
| !! | TGATGGGCTATTGAGTTTGG+AGG | - | chr2_1:81781779-81781798 | Msa0228530:five_prime_UTR | 45.0% |
| ATAACGCTTATGGAATCCGG+GGG | - | chr2_1:81781807-81781826 | Msa0228530:five_prime_UTR | 45.0% | |
| ! | CAACTTTTCTTCTTCTCCCC+CGG | + | chr2_1:81781826-81781845 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 81781325 | 81782040 | 81781325 | ID=Msa0228530;Name=Msa0228530 |
| chr2_1 | mRNA | 81781325 | 81782040 | 81781325 | ID=Msa0228530-mRNA-1;Parent=Msa0228530;Name=Msa0228530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=293|0|0.5|1|0|0|2|0|124 |
| chr2_1 | exon | 81781325 | 81781445 | 81781325 | ID=Msa0228530-mRNA-1:exon:24469;Parent=Msa0228530-mRNA-1 |
| chr2_1 | exon | 81781494 | 81782040 | 81781494 | ID=Msa0228530-mRNA-1:exon:24468;Parent=Msa0228530-mRNA-1 |
| chr2_1 | five_prime_UTR | 81781748 | 81782040 | 81781748 | ID=Msa0228530-mRNA-1:five_prime_utr;Parent=Msa0228530-mRNA-1 |
| chr2_1 | CDS | 81781494 | 81781747 | 81781494 | ID=Msa0228530-mRNA-1:cds;Parent=Msa0228530-mRNA-1 |
| chr2_1 | CDS | 81781325 | 81781445 | 81781325 | ID=Msa0228530-mRNA-1:cds;Parent=Msa0228530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
