Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0242360 | XP_003594766.3 | 59.167 | 120 | 4 | 1 | 1 | 120 | 1 | 75 | 2.50e-26 | 104 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0242360 | A0A392NIK9 | 48.333 | 120 | 17 | 1 | 1 | 120 | 1 | 75 | 1.07e-15 | 76.6 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0242360 | Msa0280580 | 0.964845 | 7.659882e-124 | -8.615850e-47 |
Msa0242360 | Msa0363460 | 0.837703 | 4.445186e-57 | -8.615850e-47 |
Msa0242360 | Msa0411000 | 0.821234 | 4.499823e-53 | -8.615850e-47 |
Msa0242360 | Msa0418000 | 0.816495 | 5.368655e-52 | -8.615850e-47 |
Msa0242360 | Msa0455230 | 0.834453 | 2.970592e-56 | -8.615850e-47 |
Msa0242360 | Msa0656270 | 0.828510 | 8.637591e-55 | -8.615850e-47 |
Msa0242360 | Msa0700070 | 0.835465 | 1.651601e-56 | -8.615850e-47 |
Msa0242360 | Msa1244830 | 0.820721 | 5.905497e-53 | -8.615850e-47 |
Msa0242360 | Msa1398350 | 0.817222 | 3.688064e-52 | -8.615850e-47 |
Msa0242360 | Msa1405400 | 0.812581 | 3.945699e-51 | -8.615850e-47 |
Msa0242360 | Msa1428440 | 0.823509 | 1.333285e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0242360 | MtrunA17_Chr2g0294531 | 36.364 | 121 | 32 | 1 | 1 | 121 | 1 | 76 | 1.30e-16 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 58 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAGGGGAGGGGAGGGTTT+TGG | 0.212662 | 2_2:+18490214 | Msa0242360:CDS |
TAAGGCTTTGTTTGGGAGTT+TGG | 0.212875 | 2_2:-18490552 | None:intergenic |
TTAGGCTTTGTTTGGGAGTT+TGG | 0.225567 | 2_2:+18490189 | Msa0242360:CDS |
ATTTGCACGGGCGTTGATTT+TGG | 0.227744 | 2_2:-18490611 | None:intergenic |
TTTGGAGGGGAGGGGAGGGG+AGG | 0.254388 | 2_2:+18490207 | Msa0242360:CDS |
AGTACCATGGTTGGTGGATT+TGG | 0.268216 | 2_2:-18490156 | None:intergenic |
ATGGTTGTTAAGGCTTTGTT+TGG | 0.269647 | 2_2:-18490560 | None:intergenic |
GGGAGTTTGGAGGGGAGGGG+AGG | 0.289218 | 2_2:+18490202 | Msa0242360:CDS |
GAGTTTGGAGGGGAGGGGAG+GGG | 0.299317 | 2_2:+18490204 | Msa0242360:CDS |
AAATTCATTTAGGCTTTGTT+TGG | 0.328746 | 2_2:+18490181 | Msa0242360:CDS |
TTTGGGAGTTTGGAGGGGAG+GGG | 0.336426 | 2_2:+18490199 | Msa0242360:CDS |
TTGGGAGGAGAGGGCTTTGC+AGG | 0.338479 | 2_2:+18490273 | Msa0242360:CDS |
GTTTGGGAGTTTGGAGGGGA+GGG | 0.354818 | 2_2:+18490198 | Msa0242360:CDS |
TGTTTGGGAGTTTGGAGGGG+AGG | 0.355934 | 2_2:+18490197 | Msa0242360:CDS |
GGAGTTTGGAGGGGAGGGGA+GGG | 0.360686 | 2_2:+18490203 | Msa0242360:CDS |
GCCTTAACAACCATGGTAAC+GGG | 0.361815 | 2_2:+18490569 | Msa0242360:CDS |
GCTTTGTTTGGGAGTTTGGA+GGG | 0.374549 | 2_2:-18490548 | None:intergenic |
CCCCGTTACCATGGTTGTTA+AGG | 0.378195 | 2_2:-18490570 | None:intergenic |
GCTTTGTTTGGGAGTTTGGA+GGG | 0.388556 | 2_2:+18490193 | Msa0242360:CDS |
ATGGTACTGGAAATTCATTT+AGG | 0.401075 | 2_2:+18490171 | Msa0242360:CDS |
GGCTTTGTTTGGGAGTTTGG+AGG | 0.401752 | 2_2:+18490192 | Msa0242360:CDS |
GGCTTTGTTTGGGAGTTTGG+AGG | 0.401752 | 2_2:-18490549 | None:intergenic |
TTGGAGGGGAGGGGAGGGGA+GGG | 0.405392 | 2_2:+18490208 | Msa0242360:CDS |
ATCAACGCCCGTGCAAATGC+CGG | 0.417551 | 2_2:+18490616 | Msa0242360:CDS |
AATTCATTTAGGCTTTGTTT+GGG | 0.432275 | 2_2:+18490182 | Msa0242360:CDS |
CTTTGTTTGGGAGTTTGGAG+GGG | 0.437713 | 2_2:+18490194 | Msa0242360:CDS |
TACGGTCCCCGGCATTTGCA+CGG | 0.446381 | 2_2:-18490624 | None:intergenic |
TCAACGCCCGTGCAAATGCC+GGG | 0.453778 | 2_2:+18490617 | Msa0242360:CDS |
AAATCCACCAACCATGGTAC+TGG | 0.464639 | 2_2:+18490158 | Msa0242360:CDS |
CTTTGTTTGGGAGTTTGGAG+GGG | 0.468174 | 2_2:-18490547 | None:intergenic |
GCGGTGTTTGTTACGGTCCC+CGG | 0.472456 | 2_2:-18490635 | None:intergenic |
CACCGCACCACCAATAGTTA+TGG | 0.478897 | 2_2:+18490652 | Msa0242360:CDS |
TGGTGGTGCGGTGTTTGTTA+CGG | 0.482221 | 2_2:-18490642 | None:intergenic |
AGTGCGGCCACCATAACTAT+TGG | 0.482716 | 2_2:-18490662 | None:intergenic |
TGGTTGTTAAGGCTTTGTTT+GGG | 0.484424 | 2_2:-18490559 | None:intergenic |
ACGGTCCCCGGCATTTGCAC+GGG | 0.492122 | 2_2:-18490623 | None:intergenic |
TGGAAGAAATAGAAGACATT+GGG | 0.497892 | 2_2:+18490255 | Msa0242360:CDS |
TAGAAGACATTGGGAGGAGA+GGG | 0.505993 | 2_2:+18490264 | Msa0242360:CDS |
ATTTCCAGTACCATGGTTGG+TGG | 0.513143 | 2_2:-18490162 | None:intergenic |
AGCCTTAACAACCATGGTAA+CGG | 0.529548 | 2_2:+18490568 | Msa0242360:CDS |
GTGGAAGAAATAGAAGACAT+TGG | 0.540645 | 2_2:+18490254 | Msa0242360:CDS |
AACGGGGACCAAAATTTCTC+CGG | 0.541630 | 2_2:+18490586 | Msa0242360:CDS |
AAACCTCATCGCAATGCTTG+AGG | 0.561734 | 2_2:+18490112 | Msa0242360:CDS |
TGAATTTCCAGTACCATGGT+TGG | 0.563510 | 2_2:-18490165 | None:intergenic |
ATAGAAGACATTGGGAGGAG+AGG | 0.564987 | 2_2:+18490263 | Msa0242360:CDS |
CACCATAACTATTGGTGGTG+CGG | 0.572312 | 2_2:-18490654 | None:intergenic |
AAGAAATAGAAGACATTGGG+AGG | 0.586992 | 2_2:+18490258 | Msa0242360:CDS |
TGGCCGCACTATTAATAACA+AGG | 0.609381 | 2_2:+18490675 | Msa0242360:CDS |
TAAATGAATTTCCAGTACCA+TGG | 0.609714 | 2_2:-18490169 | None:intergenic |
TACCCTTGTTATTAATAGTG+CGG | 0.610643 | 2_2:-18490678 | None:intergenic |
CGCACCACCAATAGTTATGG+TGG | 0.610700 | 2_2:+18490655 | Msa0242360:CDS |
CAGCCTCAAGCATTGCGATG+AGG | 0.612561 | 2_2:-18490115 | None:intergenic |
GCGGCCACCATAACTATTGG+TGG | 0.630307 | 2_2:-18490659 | None:intergenic |
CAACGCCCGTGCAAATGCCG+GGG | 0.636406 | 2_2:+18490618 | Msa0242360:CDS |
GCTTCCAAATCCACCAACCA+TGG | 0.636574 | 2_2:+18490152 | Msa0242360:CDS |
CCTTAACAACCATGGTAACG+GGG | 0.661779 | 2_2:+18490570 | Msa0242360:CDS |
GGCCGCACTATTAATAACAA+GGG | 0.679607 | 2_2:+18490676 | Msa0242360:CDS |
AAACAAAGCCTTAACAACCA+TGG | 0.691518 | 2_2:+18490562 | Msa0242360:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTCATTTAGGCTTTGTT+TGG | + | chr2_2:18490181-18490200 | Msa0242360:CDS | 25.0% |
!!! | AATTCATTTAGGCTTTGTTT+GGG | + | chr2_2:18490182-18490201 | Msa0242360:CDS | 25.0% |
TAAATGAATTTCCAGTACCA+TGG | - | chr2_2:18490172-18490191 | None:intergenic | 30.0% | |
! | ATGGTACTGGAAATTCATTT+AGG | + | chr2_2:18490171-18490190 | Msa0242360:CDS | 30.0% |
TGGAAGAAATAGAAGACATT+GGG | + | chr2_2:18490255-18490274 | Msa0242360:CDS | 30.0% | |
AATAAAAAATCCCCCTCATT+TGG | + | chr2_2:18490312-18490331 | Msa0242360:intron | 30.0% | |
ATAAAAAATCCCCCTCATTT+GGG | + | chr2_2:18490313-18490332 | Msa0242360:intron | 30.0% | |
!! | TACCCTTGTTATTAATAGTG+CGG | - | chr2_2:18490681-18490700 | None:intergenic | 30.0% |
GTGGAAGAAATAGAAGACAT+TGG | + | chr2_2:18490254-18490273 | Msa0242360:CDS | 35.0% | |
AAGAAATAGAAGACATTGGG+AGG | + | chr2_2:18490258-18490277 | Msa0242360:CDS | 35.0% | |
TAAAAAATCCCCCTCATTTG+GGG | + | chr2_2:18490314-18490333 | Msa0242360:intron | 35.0% | |
GGGAACTCAAAAATTGCATT+GGG | + | chr2_2:18490335-18490354 | Msa0242360:intron | 35.0% | |
GGAACTCAAAAATTGCATTG+GGG | + | chr2_2:18490336-18490355 | Msa0242360:intron | 35.0% | |
GAACTCAAAAATTGCATTGG+GGG | + | chr2_2:18490337-18490356 | Msa0242360:intron | 35.0% | |
!! | TGGTTGTTAAGGCTTTGTTT+GGG | - | chr2_2:18490562-18490581 | None:intergenic | 35.0% |
!! | ATGGTTGTTAAGGCTTTGTT+TGG | - | chr2_2:18490563-18490582 | None:intergenic | 35.0% |
AAACAAAGCCTTAACAACCA+TGG | + | chr2_2:18490562-18490581 | Msa0242360:CDS | 35.0% | |
! | GATGAGGTTTTTGATCACAC+GGG | - | chr2_2:18490102-18490121 | None:intergenic | 40.0% |
! | CGATGAGGTTTTTGATCACA+CGG | - | chr2_2:18490103-18490122 | None:intergenic | 40.0% |
TGAATTTCCAGTACCATGGT+TGG | - | chr2_2:18490168-18490187 | None:intergenic | 40.0% | |
!! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr2_2:18490189-18490208 | Msa0242360:CDS | 40.0% |
!!! | GAGGGTTTTGGAAAAAAGGA+AGG | + | chr2_2:18490226-18490245 | Msa0242360:CDS | 40.0% |
AAAAAATCCCCCTCATTTGG+GGG | + | chr2_2:18490315-18490334 | Msa0242360:intron | 40.0% | |
!!! | TTTTGAGTTCCCCCAAATGA+GGG | - | chr2_2:18490327-18490346 | None:intergenic | 40.0% |
!!! | TTTTTGAGTTCCCCCAAATG+AGG | - | chr2_2:18490328-18490347 | None:intergenic | 40.0% |
GGGGAACTCAAAAATTGCAT+TGG | + | chr2_2:18490334-18490353 | Msa0242360:intron | 40.0% | |
TCAAAAATTGCATTGGGGGA+GGG | + | chr2_2:18490341-18490360 | Msa0242360:intron | 40.0% | |
!! | TAAGGCTTTGTTTGGGAGTT+TGG | - | chr2_2:18490555-18490574 | None:intergenic | 40.0% |
AGCCTTAACAACCATGGTAA+CGG | + | chr2_2:18490568-18490587 | Msa0242360:CDS | 40.0% | |
!! | TTTTGGCACCGGAGAAATTT+TGG | - | chr2_2:18490597-18490616 | None:intergenic | 40.0% |
TGGCCGCACTATTAATAACA+AGG | + | chr2_2:18490675-18490694 | Msa0242360:CDS | 40.0% | |
GGCCGCACTATTAATAACAA+GGG | + | chr2_2:18490676-18490695 | Msa0242360:CDS | 40.0% | |
AAACCTCATCGCAATGCTTG+AGG | + | chr2_2:18490112-18490131 | Msa0242360:CDS | 45.0% | |
!! | AGTACCATGGTTGGTGGATT+TGG | - | chr2_2:18490159-18490178 | None:intergenic | 45.0% |
AAATCCACCAACCATGGTAC+TGG | + | chr2_2:18490158-18490177 | Msa0242360:CDS | 45.0% | |
ATTTCCAGTACCATGGTTGG+TGG | - | chr2_2:18490165-18490184 | None:intergenic | 45.0% | |
!! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr2_2:18490193-18490212 | Msa0242360:CDS | 45.0% |
! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr2_2:18490194-18490213 | Msa0242360:CDS | 45.0% |
!!! | AGGGGAGGGTTTTGGAAAAA+AGG | + | chr2_2:18490222-18490241 | Msa0242360:CDS | 45.0% |
GGAAAAAAGGAAGGAGCAAG+TGG | + | chr2_2:18490235-18490254 | Msa0242360:CDS | 45.0% | |
ATAGAAGACATTGGGAGGAG+AGG | + | chr2_2:18490263-18490282 | Msa0242360:CDS | 45.0% | |
TAGAAGACATTGGGAGGAGA+GGG | + | chr2_2:18490264-18490283 | Msa0242360:CDS | 45.0% | |
! | TTTGAGTTCCCCCAAATGAG+GGG | - | chr2_2:18490326-18490345 | None:intergenic | 45.0% |
CTCAAAAATTGCATTGGGGG+AGG | + | chr2_2:18490340-18490359 | Msa0242360:intron | 45.0% | |
! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr2_2:18490194-18490213 | None:intergenic | 45.0% |
!! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr2_2:18490193-18490212 | None:intergenic | 45.0% |
GCCTTAACAACCATGGTAAC+GGG | + | chr2_2:18490569-18490588 | Msa0242360:CDS | 45.0% | |
! | CCTTAACAACCATGGTAACG+GGG | + | chr2_2:18490570-18490589 | Msa0242360:CDS | 45.0% |
!! | AATTTTGGTCCCCGTTACCA+TGG | - | chr2_2:18490582-18490601 | None:intergenic | 45.0% |
AACGGGGACCAAAATTTCTC+CGG | + | chr2_2:18490586-18490605 | Msa0242360:CDS | 45.0% | |
!!! | ATTTGCACGGGCGTTGATTT+TGG | - | chr2_2:18490614-18490633 | None:intergenic | 45.0% |
!! | CACCATAACTATTGGTGGTG+CGG | - | chr2_2:18490657-18490676 | None:intergenic | 45.0% |
GCTTCCAAATCCACCAACCA+TGG | + | chr2_2:18490152-18490171 | Msa0242360:CDS | 50.0% | |
!! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr2_2:18490192-18490211 | Msa0242360:CDS | 50.0% |
TTGAGTTCCCCCAAATGAGG+GGG | - | chr2_2:18490325-18490344 | None:intergenic | 50.0% | |
! | ATTGCATTGGGGGAGGGTTT+TGG | + | chr2_2:18490347-18490366 | Msa0242360:intron | 50.0% |
! | TTGCATTGGGGGAGGGTTTT+GGG | + | chr2_2:18490348-18490367 | Msa0242360:intron | 50.0% |
!!! | AGGGTTTTGGGGGGTTATAG+AGG | + | chr2_2:18490360-18490379 | Msa0242360:intron | 50.0% |
!!! | GGGTTTTGGGGGGTTATAGA+GGG | + | chr2_2:18490361-18490380 | Msa0242360:intron | 50.0% |
AGTTTGGAGGGGAGAGCTTT+GGG | - | chr2_2:18490539-18490558 | None:intergenic | 50.0% | |
!! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr2_2:18490192-18490211 | None:intergenic | 50.0% |
CCCCGTTACCATGGTTGTTA+AGG | - | chr2_2:18490573-18490592 | None:intergenic | 50.0% | |
! | TGGTGGTGCGGTGTTTGTTA+CGG | - | chr2_2:18490645-18490664 | None:intergenic | 50.0% |
CACCGCACCACCAATAGTTA+TGG | + | chr2_2:18490652-18490671 | Msa0242360:CDS | 50.0% | |
CGCACCACCAATAGTTATGG+TGG | + | chr2_2:18490655-18490674 | Msa0242360:CDS | 50.0% | |
AGTGCGGCCACCATAACTAT+TGG | - | chr2_2:18490665-18490684 | None:intergenic | 50.0% | |
! | CAGCCTCAAGCATTGCGATG+AGG | - | chr2_2:18490118-18490137 | None:intergenic | 55.0% |
TGTTTGGGAGTTTGGAGGGG+AGG | + | chr2_2:18490197-18490216 | Msa0242360:CDS | 55.0% | |
GTTTGGGAGTTTGGAGGGGA+GGG | + | chr2_2:18490198-18490217 | Msa0242360:CDS | 55.0% | |
TTTGGGAGTTTGGAGGGGAG+GGG | + | chr2_2:18490199-18490218 | Msa0242360:CDS | 55.0% | |
! | TGCATTGGGGGAGGGTTTTG+GGG | + | chr2_2:18490349-18490368 | Msa0242360:intron | 55.0% |
! | TTTGGAGGGGAGAGCTTTGG+GGG | - | chr2_2:18490537-18490556 | None:intergenic | 55.0% |
GTTTGGAGGGGAGAGCTTTG+GGG | - | chr2_2:18490538-18490557 | None:intergenic | 55.0% | |
GAGTTTGGAGGGGAGAGCTT+TGG | - | chr2_2:18490540-18490559 | None:intergenic | 55.0% | |
!!! | ACGGGCGTTGATTTTGGCAC+CGG | - | chr2_2:18490608-18490627 | None:intergenic | 55.0% |
ATCAACGCCCGTGCAAATGC+CGG | + | chr2_2:18490616-18490635 | Msa0242360:CDS | 55.0% | |
GCGGCCACCATAACTATTGG+TGG | - | chr2_2:18490662-18490681 | None:intergenic | 55.0% | |
TTGGGAGGAGAGGGCTTTGC+AGG | + | chr2_2:18490273-18490292 | Msa0242360:CDS | 60.0% | |
!! | GCATTGGGGGAGGGTTTTGG+GGG | + | chr2_2:18490350-18490369 | Msa0242360:intron | 60.0% |
!!! | CATTGGGGGAGGGTTTTGGG+GGG | + | chr2_2:18490351-18490370 | Msa0242360:intron | 60.0% |
!! | TTGGAGGGGAGAGCTTTGGG+GGG | - | chr2_2:18490536-18490555 | None:intergenic | 60.0% |
TCAACGCCCGTGCAAATGCC+GGG | + | chr2_2:18490617-18490636 | Msa0242360:CDS | 60.0% | |
TACGGTCCCCGGCATTTGCA+CGG | - | chr2_2:18490627-18490646 | None:intergenic | 60.0% | |
! | GCGGTGTTTGTTACGGTCCC+CGG | - | chr2_2:18490638-18490657 | None:intergenic | 60.0% |
GGAGTTTGGAGGGGAGGGGA+GGG | + | chr2_2:18490203-18490222 | Msa0242360:CDS | 65.0% | |
GAGTTTGGAGGGGAGGGGAG+GGG | + | chr2_2:18490204-18490223 | Msa0242360:CDS | 65.0% | |
CAACGCCCGTGCAAATGCCG+GGG | + | chr2_2:18490618-18490637 | Msa0242360:CDS | 65.0% | |
ACGGTCCCCGGCATTTGCAC+GGG | - | chr2_2:18490626-18490645 | None:intergenic | 65.0% | |
GGGAGTTTGGAGGGGAGGGG+AGG | + | chr2_2:18490202-18490221 | Msa0242360:CDS | 70.0% | |
TTTGGAGGGGAGGGGAGGGG+AGG | + | chr2_2:18490207-18490226 | Msa0242360:CDS | 70.0% | |
TTGGAGGGGAGGGGAGGGGA+GGG | + | chr2_2:18490208-18490227 | Msa0242360:CDS | 70.0% | |
! | GGGAGGGGAGGGGAGGGTTT+TGG | + | chr2_2:18490214-18490233 | Msa0242360:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 18490092 | 18490705 | 18490092 | ID=Msa0242360;Name=Msa0242360 |
chr2_2 | mRNA | 18490092 | 18490705 | 18490092 | ID=Msa0242360-mRNA-1;Parent=Msa0242360;Name=Msa0242360-mRNA-1;_AED=0.61;_eAED=1.00;_QI=0|0|0|0.5|1|1|2|0|121 |
chr2_2 | exon | 18490092 | 18490294 | 18490092 | ID=Msa0242360-mRNA-1:exon:7579;Parent=Msa0242360-mRNA-1 |
chr2_2 | exon | 18490543 | 18490705 | 18490543 | ID=Msa0242360-mRNA-1:exon:7580;Parent=Msa0242360-mRNA-1 |
chr2_2 | CDS | 18490092 | 18490294 | 18490092 | ID=Msa0242360-mRNA-1:cds;Parent=Msa0242360-mRNA-1 |
chr2_2 | CDS | 18490543 | 18490705 | 18490543 | ID=Msa0242360-mRNA-1:cds;Parent=Msa0242360-mRNA-1 |
Gene Sequence |
Protein sequence |