Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398350 | XP_013460829.1 | 98.539 | 479 | 6 | 1 | 1 | 479 | 1 | 478 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398350 | sp|Q9LM55|FBK8_ARATH | 64.033 | 481 | 165 | 5 | 1 | 479 | 1 | 475 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398350 | A0A072V0J6 | 98.539 | 479 | 6 | 1 | 1 | 479 | 1 | 478 | 0.0 | 970 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa1398350 | 0.803468 | 3.436196e-49 | -8.615850e-47 |
| Msa0038310 | Msa1398350 | 0.825775 | 3.900007e-54 | -8.615850e-47 |
| Msa0060350 | Msa1398350 | 0.807190 | 5.705695e-50 | -8.615850e-47 |
| Msa0086090 | Msa1398350 | 0.800395 | 1.470764e-48 | -8.615850e-47 |
| Msa0087110 | Msa1398350 | 0.820370 | 7.110028e-53 | -8.615850e-47 |
| Msa1355260 | Msa1398350 | 0.800583 | 1.346404e-48 | -8.615850e-47 |
| Msa1398350 | Msa1426750 | 0.802619 | 5.147471e-49 | -8.615850e-47 |
| Msa1398350 | Msa1428440 | 0.801640 | 8.184093e-49 | -8.615850e-47 |
| Msa0635130 | Msa1398350 | 0.809978 | 1.448652e-50 | -8.615850e-47 |
| Msa0646390 | Msa1398350 | 0.806721 | 7.168143e-50 | -8.615850e-47 |
| Msa0700070 | Msa1398350 | 0.800316 | 1.525965e-48 | -8.615850e-47 |
| Msa0719340 | Msa1398350 | 0.809273 | 2.052788e-50 | -8.615850e-47 |
| Msa0143980 | Msa1398350 | 0.810676 | 1.023992e-50 | -8.615850e-47 |
| Msa1272130 | Msa1398350 | 0.823954 | 1.048492e-53 | -8.615850e-47 |
| Msa0455230 | Msa1398350 | 0.818867 | 1.566380e-52 | -8.615850e-47 |
| Msa0988500 | Msa1398350 | 0.800355 | 1.498118e-48 | -8.615850e-47 |
| Msa0242360 | Msa1398350 | 0.817222 | 3.688064e-52 | -8.615850e-47 |
| Msa0323630 | Msa1398350 | 0.801172 | 1.020681e-48 | -8.615850e-47 |
| Msa0363460 | Msa1398350 | 0.818502 | 1.895324e-52 | -8.615850e-47 |
| Msa0539320 | Msa1398350 | 0.806745 | 7.086333e-50 | -8.615850e-47 |
| Msa0549740 | Msa1398350 | 0.824354 | 8.448975e-54 | -8.615850e-47 |
| Msa0577870 | Msa1398350 | 0.801088 | 1.062027e-48 | -8.615850e-47 |
| Msa0896210 | Msa1398350 | 0.810681 | 1.021427e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398350 | MtrunA17_Chr3g0115401 | 98.539 | 479 | 6 | 1 | 1 | 479 | 1 | 478 | 0.0 | 970 |
| Msa1398350 | MtrunA17_Chr2g0278921 | 62.363 | 457 | 165 | 3 | 25 | 479 | 25 | 476 | 0.0 | 574 |
| Msa1398350 | MtrunA17_Chr8g0378511 | 25.951 | 447 | 237 | 14 | 41 | 478 | 75 | 436 | 1.24e-37 | 142 |
| Msa1398350 | MtrunA17_Chr4g0063531 | 27.778 | 378 | 187 | 14 | 43 | 411 | 67 | 367 | 1.80e-32 | 128 |
| Msa1398350 | MtrunA17_Chr2g0285851 | 27.174 | 368 | 193 | 13 | 21 | 382 | 32 | 330 | 3.19e-32 | 127 |
| Msa1398350 | MtrunA17_Chr8g0377241 | 24.552 | 391 | 213 | 12 | 29 | 413 | 37 | 351 | 6.53e-22 | 97.4 |
| Msa1398350 | MtrunA17_Chr3g0129221 | 23.121 | 346 | 186 | 7 | 38 | 382 | 4 | 270 | 2.15e-18 | 86.7 |
| Msa1398350 | MtrunA17_Chr3g0122681 | 23.662 | 355 | 222 | 12 | 26 | 360 | 13 | 338 | 1.73e-17 | 84.0 |
| Msa1398350 | MtrunA17_Chr8g0348991 | 23.057 | 386 | 223 | 14 | 29 | 410 | 7 | 322 | 2.42e-17 | 83.6 |
| Msa1398350 | MtrunA17_Chr4g0010161 | 25.137 | 366 | 193 | 15 | 27 | 385 | 55 | 346 | 2.24e-16 | 80.9 |
| Msa1398350 | MtrunA17_Chr2g0326541 | 24.571 | 350 | 212 | 13 | 14 | 348 | 2 | 314 | 2.36e-16 | 80.5 |
| Msa1398350 | MtrunA17_Chr4g0011151 | 22.857 | 315 | 199 | 9 | 34 | 326 | 82 | 374 | 7.76e-16 | 79.7 |
| Msa1398350 | MtrunA17_Chr4g0011171 | 22.857 | 315 | 199 | 9 | 34 | 326 | 82 | 374 | 1.31e-15 | 79.0 |
| Msa1398350 | MtrunA17_Chr6g0459491 | 25.311 | 241 | 156 | 7 | 44 | 267 | 57 | 290 | 1.35e-15 | 78.6 |
| Msa1398350 | MtrunA17_Chr4g0011221 | 22.857 | 315 | 199 | 9 | 34 | 326 | 82 | 374 | 1.38e-15 | 79.0 |
| Msa1398350 | MtrunA17_Chr4g0011161 | 22.540 | 315 | 200 | 9 | 34 | 326 | 82 | 374 | 1.59e-15 | 78.6 |
| Msa1398350 | MtrunA17_Chr4g0010131 | 23.438 | 256 | 163 | 8 | 34 | 267 | 51 | 295 | 2.27e-15 | 77.8 |
| Msa1398350 | MtrunA17_Chr7g0225551 | 25.417 | 240 | 145 | 7 | 46 | 267 | 58 | 281 | 2.34e-15 | 77.8 |
| Msa1398350 | MtrunA17_Chr4g0060541 | 23.529 | 255 | 177 | 7 | 23 | 267 | 9 | 255 | 1.26e-14 | 75.5 |
| Msa1398350 | MtrunA17_Chr4g0011191 | 21.973 | 223 | 153 | 4 | 34 | 239 | 82 | 300 | 6.24e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398350 | AT1G22040.1 | 64.033 | 481 | 165 | 5 | 1 | 479 | 1 | 475 | 0.0 | 599 |
| Msa1398350 | AT1G55270.1 | 25.926 | 459 | 242 | 15 | 28 | 477 | 63 | 432 | 1.42e-36 | 140 |
| Msa1398350 | AT1G30090.1 | 26.087 | 345 | 184 | 12 | 43 | 382 | 53 | 331 | 3.31e-28 | 116 |
| Msa1398350 | AT1G55270.2 | 25.635 | 394 | 195 | 15 | 93 | 477 | 2 | 306 | 8.76e-24 | 102 |
| Msa1398350 | AT2G24540.1 | 24.051 | 395 | 229 | 12 | 16 | 408 | 2 | 327 | 2.21e-21 | 95.9 |
| Msa1398350 | AT1G26930.1 | 25.984 | 254 | 173 | 6 | 43 | 287 | 71 | 318 | 6.24e-19 | 89.4 |
| Msa1398350 | AT2G21950.1 | 24.348 | 345 | 186 | 10 | 42 | 382 | 19 | 292 | 2.43e-17 | 84.0 |
| Msa1398350 | AT4G11770.1 | 28.511 | 235 | 151 | 7 | 38 | 266 | 6 | 229 | 3.35e-16 | 80.9 |
| Msa1398350 | AT1G19460.1 | 23.262 | 374 | 205 | 14 | 44 | 408 | 56 | 356 | 5.01e-16 | 80.5 |
| Msa1398350 | AT3G61350.2 | 25.074 | 339 | 168 | 15 | 30 | 359 | 9 | 270 | 9.85e-16 | 79.0 |
| Msa1398350 | AT3G61350.1 | 25.074 | 339 | 168 | 15 | 30 | 359 | 9 | 270 | 9.85e-16 | 79.0 |
| Msa1398350 | AT4G39550.1 | 25.444 | 338 | 200 | 10 | 45 | 382 | 25 | 310 | 1.59e-15 | 78.6 |
| Msa1398350 | AT1G19470.1 | 23.947 | 380 | 204 | 15 | 44 | 414 | 56 | 359 | 1.85e-15 | 78.6 |
| Msa1398350 | AT3G27150.2 | 25.000 | 256 | 152 | 8 | 45 | 276 | 72 | 311 | 9.02e-15 | 76.6 |
| Msa1398350 | AT3G27150.1 | 25.000 | 256 | 152 | 8 | 45 | 276 | 72 | 311 | 9.02e-15 | 76.6 |
| Msa1398350 | AT1G26930.2 | 25.203 | 246 | 133 | 6 | 43 | 287 | 71 | 266 | 1.28e-14 | 75.9 |
| Msa1398350 | AT5G49000.2 | 28.216 | 241 | 135 | 7 | 28 | 266 | 5 | 209 | 1.41e-14 | 75.5 |
| Msa1398350 | AT1G74510.2 | 24.047 | 341 | 166 | 14 | 64 | 385 | 116 | 382 | 3.88e-13 | 71.6 |
| Msa1398350 | AT1G74510.1 | 24.047 | 341 | 166 | 14 | 64 | 385 | 116 | 382 | 3.88e-13 | 71.6 |
| Msa1398350 | AT1G74510.3 | 24.047 | 341 | 166 | 14 | 64 | 385 | 116 | 382 | 3.88e-13 | 71.6 |
| Msa1398350 | AT3G06570.1 | 27.149 | 221 | 128 | 5 | 47 | 265 | 29 | 218 | 9.37e-13 | 70.1 |
| Msa1398350 | AT5G60570.2 | 23.810 | 231 | 163 | 4 | 43 | 267 | 49 | 272 | 1.35e-12 | 69.7 |
| Msa1398350 | AT5G60570.1 | 23.810 | 231 | 163 | 4 | 43 | 267 | 49 | 272 | 1.35e-12 | 69.7 |
| Msa1398350 | AT5G60570.3 | 23.810 | 231 | 163 | 4 | 43 | 267 | 49 | 272 | 1.35e-12 | 69.7 |
| Msa1398350 | AT5G38680.1 | 27.706 | 231 | 134 | 6 | 45 | 273 | 17 | 216 | 8.68e-12 | 67.0 |
| Msa1398350 | AT5G49000.1 | 28.436 | 211 | 120 | 7 | 28 | 236 | 5 | 186 | 1.53e-11 | 65.9 |
| Msa1398350 | AT4G39600.1 | 27.149 | 221 | 127 | 6 | 45 | 265 | 15 | 201 | 1.87e-11 | 65.9 |
| Msa1398350 | AT4G39600.2 | 27.149 | 221 | 127 | 6 | 45 | 265 | 26 | 212 | 1.87e-11 | 66.2 |
| Msa1398350 | AT2G44130.1 | 25.773 | 291 | 179 | 11 | 43 | 325 | 19 | 280 | 4.34e-11 | 65.1 |
Find 123 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCCATGAGTTTGTTTC+AGG | 0.204153 | tig0022248:+61028 | None:intergenic |
| GGCCGAGCTGCGCAGTAATT+TGG | 0.229110 | tig0022248:-60726 | Msa1398350:CDS |
| GGTTCTTCCAAATGCTTTCT+TGG | 0.236360 | tig0022248:-61167 | Msa1398350:CDS |
| TTCCACAAAGTTTATATTCA+TGG | 0.271003 | tig0022248:-61087 | Msa1398350:CDS |
| GAAGTTATTAGAGGCTTTCT+TGG | 0.279878 | tig0022248:-61520 | Msa1398350:CDS |
| TGATGAAGAAGAATCTAAAA+AGG | 0.280259 | tig0022248:-61596 | Msa1398350:CDS |
| AGAATTGCTGAAGTTATTAG+AGG | 0.298500 | tig0022248:-61529 | Msa1398350:CDS |
| GAGTCTCCTTATCTACTTGC+TGG | 0.303026 | tig0022248:-60809 | Msa1398350:CDS |
| GATAGTTGCTAGTAGGTGTT+TGG | 0.310903 | tig0022248:-60609 | Msa1398350:CDS |
| AGGGTTCATCTTCTAGGCTT+TGG | 0.313263 | tig0022248:-61576 | Msa1398350:CDS |
| AATAACAAGCTTTATGTTGT+TGG | 0.331129 | tig0022248:-61301 | Msa1398350:CDS |
| GCTGTATTTGTTGGTTAAGT+TGG | 0.334835 | tig0022248:-61698 | Msa1398350:CDS |
| ATTGGAAAAGTCCCTATATA+TGG | 0.351212 | tig0022248:-60845 | Msa1398350:CDS |
| GATACCTCATCAGGGAGATT+TGG | 0.365248 | tig0022248:+61853 | None:intergenic |
| GAATCATCAGAACCATATAT+AGG | 0.378338 | tig0022248:+60833 | None:intergenic |
| CCGAAACAGACGCAGTTGTT+TGG | 0.378938 | tig0022248:-60634 | Msa1398350:CDS |
| TGCTAGTAGGTGTTTGGGAC+AGG | 0.379732 | tig0022248:-60603 | Msa1398350:CDS |
| CTGTATTTGTTGGTTAAGTT+GGG | 0.385502 | tig0022248:-61697 | Msa1398350:CDS |
| CCAAACAACTGCGTCTGTTT+CGG | 0.386041 | tig0022248:+60634 | None:intergenic |
| AATCATCAGAACCATATATA+GGG | 0.398150 | tig0022248:+60834 | None:intergenic |
| ATCTGAATCGATACCTCATC+AGG | 0.403634 | tig0022248:+61844 | None:intergenic |
| CACAGGTTTGACAGCATACA+TGG | 0.407493 | tig0022248:-61122 | Msa1398350:CDS |
| TATCTACTTGCTGGTTTCCA+TGG | 0.416465 | tig0022248:-60800 | Msa1398350:CDS |
| TCTTCTTCATCAACAACATT+AGG | 0.419662 | tig0022248:+61607 | None:intergenic |
| TAGATCCGAGATCGAGGATA+TGG | 0.422429 | tig0022248:-61648 | Msa1398350:CDS |
| GCTCTCGAAAACGGCATACT+AGG | 0.424644 | tig0022248:+61193 | None:intergenic |
| CCTTCCACTGTCCATAGTAT+TGG | 0.428663 | tig0022248:+60910 | None:intergenic |
| CATCTTCTAGGCTTTGGATG+TGG | 0.429788 | tig0022248:-61570 | Msa1398350:CDS |
| GGCCATGAATATAAACTTTG+TGG | 0.433006 | tig0022248:+61085 | None:intergenic |
| GGGAGATTTGGAAACAGTCT+TGG | 0.433358 | tig0022248:+61865 | None:intergenic |
| GATGCTTGGAAAGTTGTCAT+TGG | 0.434345 | tig0022248:-60863 | Msa1398350:CDS |
| ATGTCGGCCAAGAAAGCATT+TGG | 0.438307 | tig0022248:+61160 | None:intergenic |
| GGAAGAGTGGCTGTATTTGT+TGG | 0.438529 | tig0022248:-61707 | Msa1398350:CDS |
| TCAACAACATTAGGCATAGT+AGG | 0.441980 | tig0022248:+61616 | None:intergenic |
| GACTTCTATGTCTATTGGTC+GGG | 0.449376 | tig0022248:-61347 | Msa1398350:CDS |
| GATAGAAATGCCACTTGGAA+TGG | 0.451326 | tig0022248:-61011 | Msa1398350:CDS |
| TTAGTACCTGCTTGCCGTGC+GGG | 0.453647 | tig0022248:+60977 | None:intergenic |
| TTTGGAAGATAGTTGCTAGT+AGG | 0.459506 | tig0022248:-60616 | Msa1398350:CDS |
| TCCAATAGCACAGCCGCAAA+AGG | 0.467282 | tig0022248:+61471 | None:intergenic |
| ATAGTTGCTAGTAGGTGTTT+GGG | 0.476162 | tig0022248:-60608 | Msa1398350:CDS |
| AAGTTCCTTACAAGAATTTG+CGG | 0.476864 | tig0022248:-60666 | Msa1398350:CDS |
| TCATAACATTGCTGTTCTGC+AGG | 0.486624 | tig0022248:-60747 | Msa1398350:CDS |
| CTTCAACTATGAAATGTGTC+TGG | 0.488133 | tig0022248:-61405 | Msa1398350:CDS |
| GGCTGTGCTATTGGAGCTGT+TGG | 0.490714 | tig0022248:-61463 | Msa1398350:CDS |
| TGTGGCGAAGAATACTAATT+CGG | 0.492174 | tig0022248:-61968 | Msa1398350:CDS |
| CTGCGTCTGTTTCGGCCGGC+GGG | 0.492966 | tig0022248:+60642 | None:intergenic |
| TGAGGATGGTGTCGAGGAAG+TGG | 0.493675 | tig0022248:-61786 | Msa1398350:CDS |
| GAAGTCGACTGTCACGAGTT+CGG | 0.494689 | tig0022248:-61764 | Msa1398350:CDS |
| TTGATCCCTCGACAGGTACA+TGG | 0.494889 | tig0022248:-61225 | Msa1398350:CDS |
| ACATTGAAGTAACAAATTCT+CGG | 0.495616 | tig0022248:+61808 | None:intergenic |
| TTAGAGGCTTTCTTGGAAAG+AGG | 0.497593 | tig0022248:-61513 | Msa1398350:CDS |
| ATGTTAAAGCCGATTGCCAC+AGG | 0.497640 | tig0022248:-61139 | Msa1398350:CDS |
| CGGGTCCGCAAATTCTTGTA+AGG | 0.501840 | tig0022248:+60661 | None:intergenic |
| GGTCGGGCATACTGTAAGAC+AGG | 0.502459 | tig0022248:-61331 | Msa1398350:CDS |
| AACAAGCTTTATGTTGTTGG+AGG | 0.503886 | tig0022248:-61298 | Msa1398350:CDS |
| CACTTGGAATGGGCGAAGGT+TGG | 0.505733 | tig0022248:-61000 | Msa1398350:CDS |
| GGTTGGCCCGCACGGCAAGC+AGG | 0.507113 | tig0022248:-60983 | Msa1398350:CDS |
| GCTGTCAAACCTGTGGCAAT+CGG | 0.509192 | tig0022248:+61130 | None:intergenic |
| CCAATAGCACAGCCGCAAAA+GGG | 0.509237 | tig0022248:+61472 | None:intergenic |
| TAGAGGCTTTCTTGGAAAGA+GGG | 0.509564 | tig0022248:-61512 | Msa1398350:CDS |
| ATGATCAAGGAGAAGATGCT+TGG | 0.511442 | tig0022248:-60877 | Msa1398350:CDS |
| ACTGCGTCTGTTTCGGCCGG+CGG | 0.511651 | tig0022248:+60641 | None:intergenic |
| AGAACCTGAGCTCTCGAAAA+CGG | 0.513808 | tig0022248:+61184 | None:intergenic |
| CAAGCTTTATGTTGTTGGAG+GGG | 0.516776 | tig0022248:-61296 | Msa1398350:CDS |
| TGGGCGAAGGTTGGCCCGCA+CGG | 0.518716 | tig0022248:-60991 | Msa1398350:CDS |
| CTCTGCCATATCCTCGATCT+CGG | 0.519593 | tig0022248:+61643 | None:intergenic |
| ATAGAAATGCCACTTGGAAT+GGG | 0.519646 | tig0022248:-61010 | Msa1398350:CDS |
| TTGATCCGATGCAGAATACA+TGG | 0.520704 | tig0022248:-61378 | Msa1398350:CDS |
| ATCCAAATTACTGCGCAGCT+CGG | 0.524747 | tig0022248:+60724 | None:intergenic |
| CTTTGAATGATACATGTAAG+AGG | 0.528568 | tig0022248:-61921 | Msa1398350:CDS |
| GGGGTTAGTCAAGGTCCAGC+TGG | 0.528816 | tig0022248:-61277 | Msa1398350:CDS |
| ACAAGCTTTATGTTGTTGGA+GGG | 0.533435 | tig0022248:-61297 | Msa1398350:CDS |
| AGTGTTGATGAGGGTGATGA+TGG | 0.533910 | tig0022248:+60695 | None:intergenic |
| GTTGTTGGAGGGGTTAGTCA+AGG | 0.535118 | tig0022248:-61286 | Msa1398350:CDS |
| TATAAAGTAAGAAAAGAACT+AGG | 0.535380 | tig0022248:-61736 | Msa1398350:CDS |
| AAGGTGACTTCTATGTCTAT+TGG | 0.543860 | tig0022248:-61352 | Msa1398350:CDS |
| AGGATCAAGGTATATGATCA+AGG | 0.543954 | tig0022248:-60890 | Msa1398350:CDS |
| TGGAAACCAGCAAGTAGATA+AGG | 0.544164 | tig0022248:+60803 | None:intergenic |
| TGACTTCTATGTCTATTGGT+CGG | 0.545501 | tig0022248:-61348 | Msa1398350:CDS |
| TATCCTCGATCTCGGATCTA+CGG | 0.546450 | tig0022248:+61651 | None:intergenic |
| ATGATCCTGAAACAAACTCA+TGG | 0.549672 | tig0022248:-61033 | Msa1398350:CDS |
| TGAAGAGGTATCAATCCAGC+TGG | 0.549753 | tig0022248:+61262 | None:intergenic |
| TTGCTCCATGTATTCTGCAT+CGG | 0.552823 | tig0022248:+61373 | None:intergenic |
| GTAGCTACATATCAATTACT+TGG | 0.555943 | tig0022248:+60564 | None:intergenic |
| TATGGACAGTGGAAGGATCA+AGG | 0.557539 | tig0022248:-60903 | Msa1398350:CDS |
| TAGGCTTTGGATGTGGAACA+TGG | 0.558491 | tig0022248:-61563 | Msa1398350:CDS |
| ACAAGAATTTGCGGACCCGC+CGG | 0.560358 | tig0022248:-60657 | Msa1398350:CDS |
| TTGTTACTTCAATGTGAGGA+TGG | 0.575358 | tig0022248:-61800 | Msa1398350:CDS |
| ACAACTGCGTCTGTTTCGGC+CGG | 0.576574 | tig0022248:+60638 | None:intergenic |
| CCAATACTATGGACAGTGGA+AGG | 0.580690 | tig0022248:-60910 | Msa1398350:CDS |
| AAATTGAGTGTCGTAGTCGA+TGG | 0.583833 | tig0022248:-60956 | Msa1398350:CDS |
| TGTGCTATTGGAGCTGTTGG+TGG | 0.583999 | tig0022248:-61460 | Msa1398350:CDS |
| GAATTTGTTACTTCAATGTG+AGG | 0.591869 | tig0022248:-61804 | Msa1398350:CDS |
| ATAAAGTAAGAAAAGAACTA+GGG | 0.591911 | tig0022248:-61735 | Msa1398350:CDS |
| TCTTGGATTCTCTTCATCAA+CGG | 0.595585 | tig0022248:+61882 | None:intergenic |
| GGCAATCGGCTTTAACATGT+CGG | 0.596973 | tig0022248:+61144 | None:intergenic |
| ATGCCACTTGGAATGGGCGA+AGG | 0.602736 | tig0022248:-61004 | Msa1398350:CDS |
| TCATGGATAGAAATGCCACT+TGG | 0.603202 | tig0022248:-61016 | Msa1398350:CDS |
| AACTAGGGACGACGGAAGAG+TGG | 0.605467 | tig0022248:-61720 | Msa1398350:CDS |
| GTCTGACCATGTACCTGTCG+AGG | 0.606013 | tig0022248:+61219 | None:intergenic |
| CCACTGTCCATAGTATTGGA+AGG | 0.612205 | tig0022248:+60914 | None:intergenic |
| AAAACTTCAGCAGATTGAAG+AGG | 0.613948 | tig0022248:+61247 | None:intergenic |
| GTTTCCAAATCTCCCTGATG+AGG | 0.618301 | tig0022248:-61857 | Msa1398350:CDS |
| TTTAGTACCTGCTTGCCGTG+CGG | 0.623460 | tig0022248:+60976 | None:intergenic |
| ATGCCGTAGATCCGAGATCG+AGG | 0.624971 | tig0022248:-61654 | Msa1398350:CDS |
| TCGGATCAAAGTGAGTGGGA+TGG | 0.635544 | tig0022248:-61949 | Msa1398350:CDS |
| GTTTGACAGCATACATGGGA+AGG | 0.643241 | tig0022248:-61117 | Msa1398350:CDS |
| CTAATTCGGATCAAAGTGAG+TGG | 0.647666 | tig0022248:-61954 | Msa1398350:CDS |
| TAATTCGGATCAAAGTGAGT+GGG | 0.647966 | tig0022248:-61953 | Msa1398350:CDS |
| GATGCAGAATACATGGAGCA+AGG | 0.650802 | tig0022248:-61371 | Msa1398350:CDS |
| CCTTCCAATACTATGGACAG+TGG | 0.652140 | tig0022248:-60914 | Msa1398350:CDS |
| ACTTTGTGACAGTGTTGATG+AGG | 0.658181 | tig0022248:+60685 | None:intergenic |
| AAGAAAAGAACTAGGGACGA+CGG | 0.661261 | tig0022248:-61728 | Msa1398350:CDS |
| CTTTGTGACAGTGTTGATGA+GGG | 0.663670 | tig0022248:+60686 | None:intergenic |
| TCTGACCATGTACCTGTCGA+GGG | 0.664162 | tig0022248:+61220 | None:intergenic |
| TCAATGTGAGGATGGTGTCG+AGG | 0.665635 | tig0022248:-61792 | Msa1398350:CDS |
| TCTGAATCGATACCTCATCA+GGG | 0.669169 | tig0022248:+61845 | None:intergenic |
| CAACCTTCGCCCATTCCAAG+TGG | 0.676112 | tig0022248:+61001 | None:intergenic |
| ACAGGTTTGACAGCATACAT+GGG | 0.691995 | tig0022248:-61121 | Msa1398350:CDS |
| GTCGGGCATACTGTAAGACA+GGG | 0.692352 | tig0022248:-61330 | Msa1398350:CDS |
| TGGATGTGGAACATGGTGGA+AGG | 0.693870 | tig0022248:-61556 | Msa1398350:CDS |
| CATGTATGCTGTCAAACCTG+TGG | 0.714854 | tig0022248:+61123 | None:intergenic |
| GCTTTGGATGTGGAACATGG+TGG | 0.780393 | tig0022248:-61560 | Msa1398350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAGTAAGAAAAGAACT+AGG | - | tig0022248:60817-60836 | Msa1398350:CDS | 20.0% |
| !! | ATAAAGTAAGAAAAGAACTA+GGG | - | tig0022248:60818-60837 | Msa1398350:CDS | 20.0% |
| !! | TATAAAGTAAGAAAAGAACT+AGG | - | tig0022248:60817-60836 | Msa1398350:CDS | 20.0% |
| !! | ATAAAGTAAGAAAAGAACTA+GGG | - | tig0022248:60818-60837 | Msa1398350:CDS | 20.0% |
| ! | ACATTGAAGTAACAAATTCT+CGG | + | tig0022248:60748-60767 | None:intergenic | 25.0% |
| ! | TGATGAAGAAGAATCTAAAA+AGG | - | tig0022248:60957-60976 | Msa1398350:CDS | 25.0% |
| ! | GATGAAGAAGAATCTAAAAA+GGG | - | tig0022248:60958-60977 | Msa1398350:CDS | 25.0% |
| !! | AATAACAAGCTTTATGTTGT+TGG | - | tig0022248:61252-61271 | Msa1398350:CDS | 25.0% |
| ! | TTCCACAAAGTTTATATTCA+TGG | - | tig0022248:61466-61485 | Msa1398350:CDS | 25.0% |
| ! | AATCATCAGAACCATATATA+GGG | + | tig0022248:61722-61741 | None:intergenic | 25.0% |
| ! | ACATTGAAGTAACAAATTCT+CGG | + | tig0022248:60748-60767 | None:intergenic | 25.0% |
| ! | TGATGAAGAAGAATCTAAAA+AGG | - | tig0022248:60957-60976 | Msa1398350:CDS | 25.0% |
| ! | GATGAAGAAGAATCTAAAAA+GGG | - | tig0022248:60958-60977 | Msa1398350:CDS | 25.0% |
| !! | AATAACAAGCTTTATGTTGT+TGG | - | tig0022248:61252-61271 | Msa1398350:CDS | 25.0% |
| ! | TTCCACAAAGTTTATATTCA+TGG | - | tig0022248:61466-61485 | Msa1398350:CDS | 25.0% |
| ! | AATCATCAGAACCATATATA+GGG | + | tig0022248:61722-61741 | None:intergenic | 25.0% |
| CTTTGAATGATACATGTAAG+AGG | - | tig0022248:60632-60651 | Msa1398350:CDS | 30.0% | |
| !! | GAATTTGTTACTTCAATGTG+AGG | - | tig0022248:60749-60768 | Msa1398350:CDS | 30.0% |
| ! | CTGTATTTGTTGGTTAAGTT+GGG | - | tig0022248:60856-60875 | Msa1398350:CDS | 30.0% |
| TCTTCTTCATCAACAACATT+AGG | + | tig0022248:60949-60968 | None:intergenic | 30.0% | |
| AGAATTGCTGAAGTTATTAG+AGG | - | tig0022248:61024-61043 | Msa1398350:CDS | 30.0% | |
| ! | TTTTGATCCTTCCAATACTA+TGG | - | tig0022248:61632-61651 | Msa1398350:CDS | 30.0% |
| ATTGGAAAAGTCCCTATATA+TGG | - | tig0022248:61708-61727 | Msa1398350:CDS | 30.0% | |
| GAATCATCAGAACCATATAT+AGG | + | tig0022248:61723-61742 | None:intergenic | 30.0% | |
| AAGTTCCTTACAAGAATTTG+CGG | - | tig0022248:61887-61906 | Msa1398350:CDS | 30.0% | |
| CTTTGAATGATACATGTAAG+AGG | - | tig0022248:60632-60651 | Msa1398350:CDS | 30.0% | |
| !! | GAATTTGTTACTTCAATGTG+AGG | - | tig0022248:60749-60768 | Msa1398350:CDS | 30.0% |
| ! | CTGTATTTGTTGGTTAAGTT+GGG | - | tig0022248:60856-60875 | Msa1398350:CDS | 30.0% |
| TCTTCTTCATCAACAACATT+AGG | + | tig0022248:60949-60968 | None:intergenic | 30.0% | |
| AGAATTGCTGAAGTTATTAG+AGG | - | tig0022248:61024-61043 | Msa1398350:CDS | 30.0% | |
| ! | TTTTGATCCTTCCAATACTA+TGG | - | tig0022248:61632-61651 | Msa1398350:CDS | 30.0% |
| ATTGGAAAAGTCCCTATATA+TGG | - | tig0022248:61708-61727 | Msa1398350:CDS | 30.0% | |
| GAATCATCAGAACCATATAT+AGG | + | tig0022248:61723-61742 | None:intergenic | 30.0% | |
| AAGTTCCTTACAAGAATTTG+CGG | - | tig0022248:61887-61906 | Msa1398350:CDS | 30.0% | |
| TGTGGCGAAGAATACTAATT+CGG | - | tig0022248:60585-60604 | Msa1398350:CDS | 35.0% | |
| TAATTCGGATCAAAGTGAGT+GGG | - | tig0022248:60600-60619 | Msa1398350:CDS | 35.0% | |
| TCTTGGATTCTCTTCATCAA+CGG | + | tig0022248:60674-60693 | None:intergenic | 35.0% | |
| ! | TTGTTACTTCAATGTGAGGA+TGG | - | tig0022248:60753-60772 | Msa1398350:CDS | 35.0% |
| ! | GCTGTATTTGTTGGTTAAGT+TGG | - | tig0022248:60855-60874 | Msa1398350:CDS | 35.0% |
| ! | TGGGAGAAAATAAGCTTTTG+TGG | - | tig0022248:60875-60894 | Msa1398350:CDS | 35.0% |
| TCAACAACATTAGGCATAGT+AGG | + | tig0022248:60940-60959 | None:intergenic | 35.0% | |
| CTAAAAAGGGTTCATCTTCT+AGG | - | tig0022248:60971-60990 | Msa1398350:CDS | 35.0% | |
| GAAGTTATTAGAGGCTTTCT+TGG | - | tig0022248:61033-61052 | Msa1398350:CDS | 35.0% | |
| ! | TTTGATGAAATGCCCTTTTG+CGG | - | tig0022248:61069-61088 | Msa1398350:CDS | 35.0% |
| CTTCAACTATGAAATGTGTC+TGG | - | tig0022248:61148-61167 | Msa1398350:CDS | 35.0% | |
| AAGGTGACTTCTATGTCTAT+TGG | - | tig0022248:61201-61220 | Msa1398350:CDS | 35.0% | |
| TGACTTCTATGTCTATTGGT+CGG | - | tig0022248:61205-61224 | Msa1398350:CDS | 35.0% | |
| ! | AACAAGCTTTATGTTGTTGG+AGG | - | tig0022248:61255-61274 | Msa1398350:CDS | 35.0% |
| ! | ACAAGCTTTATGTTGTTGGA+GGG | - | tig0022248:61256-61275 | Msa1398350:CDS | 35.0% |
| AAAACTTCAGCAGATTGAAG+AGG | + | tig0022248:61309-61328 | None:intergenic | 35.0% | |
| GGCCATGAATATAAACTTTG+TGG | + | tig0022248:61471-61490 | None:intergenic | 35.0% | |
| CCTCCAACATCAACAAAAAA+GGG | + | tig0022248:61492-61511 | None:intergenic | 35.0% | |
| TCCTCCAACATCAACAAAAA+AGG | + | tig0022248:61493-61512 | None:intergenic | 35.0% | |
| ATGATCCTGAAACAAACTCA+TGG | - | tig0022248:61520-61539 | Msa1398350:CDS | 35.0% | |
| ! | TCTATCCATGAGTTTGTTTC+AGG | + | tig0022248:61528-61547 | None:intergenic | 35.0% |
| ! | ATAGAAATGCCACTTGGAAT+GGG | - | tig0022248:61543-61562 | Msa1398350:CDS | 35.0% |
| AGGATCAAGGTATATGATCA+AGG | - | tig0022248:61663-61682 | Msa1398350:CDS | 35.0% | |
| ! | TGATGACATGAAGTTTTCCA+TGG | + | tig0022248:61773-61792 | None:intergenic | 35.0% |
| TTTGGAAGATAGTTGCTAGT+AGG | - | tig0022248:61937-61956 | Msa1398350:CDS | 35.0% | |
| ATAGTTGCTAGTAGGTGTTT+GGG | - | tig0022248:61945-61964 | Msa1398350:CDS | 35.0% | |
| TGTGGCGAAGAATACTAATT+CGG | - | tig0022248:60585-60604 | Msa1398350:CDS | 35.0% | |
| TAATTCGGATCAAAGTGAGT+GGG | - | tig0022248:60600-60619 | Msa1398350:CDS | 35.0% | |
| TCTTGGATTCTCTTCATCAA+CGG | + | tig0022248:60674-60693 | None:intergenic | 35.0% | |
| ! | TTGTTACTTCAATGTGAGGA+TGG | - | tig0022248:60753-60772 | Msa1398350:CDS | 35.0% |
| ! | GCTGTATTTGTTGGTTAAGT+TGG | - | tig0022248:60855-60874 | Msa1398350:CDS | 35.0% |
| ! | TGGGAGAAAATAAGCTTTTG+TGG | - | tig0022248:60875-60894 | Msa1398350:CDS | 35.0% |
| TCAACAACATTAGGCATAGT+AGG | + | tig0022248:60940-60959 | None:intergenic | 35.0% | |
| CTAAAAAGGGTTCATCTTCT+AGG | - | tig0022248:60971-60990 | Msa1398350:CDS | 35.0% | |
| GAAGTTATTAGAGGCTTTCT+TGG | - | tig0022248:61033-61052 | Msa1398350:CDS | 35.0% | |
| ! | TTTGATGAAATGCCCTTTTG+CGG | - | tig0022248:61069-61088 | Msa1398350:CDS | 35.0% |
| CTTCAACTATGAAATGTGTC+TGG | - | tig0022248:61148-61167 | Msa1398350:CDS | 35.0% | |
| AAGGTGACTTCTATGTCTAT+TGG | - | tig0022248:61201-61220 | Msa1398350:CDS | 35.0% | |
| TGACTTCTATGTCTATTGGT+CGG | - | tig0022248:61205-61224 | Msa1398350:CDS | 35.0% | |
| ! | AACAAGCTTTATGTTGTTGG+AGG | - | tig0022248:61255-61274 | Msa1398350:CDS | 35.0% |
| ! | ACAAGCTTTATGTTGTTGGA+GGG | - | tig0022248:61256-61275 | Msa1398350:CDS | 35.0% |
| AAAACTTCAGCAGATTGAAG+AGG | + | tig0022248:61309-61328 | None:intergenic | 35.0% | |
| GGCCATGAATATAAACTTTG+TGG | + | tig0022248:61471-61490 | None:intergenic | 35.0% | |
| CCTCCAACATCAACAAAAAA+GGG | + | tig0022248:61492-61511 | None:intergenic | 35.0% | |
| TCCTCCAACATCAACAAAAA+AGG | + | tig0022248:61493-61512 | None:intergenic | 35.0% | |
| ATGATCCTGAAACAAACTCA+TGG | - | tig0022248:61520-61539 | Msa1398350:CDS | 35.0% | |
| ! | TCTATCCATGAGTTTGTTTC+AGG | + | tig0022248:61528-61547 | None:intergenic | 35.0% |
| ! | ATAGAAATGCCACTTGGAAT+GGG | - | tig0022248:61543-61562 | Msa1398350:CDS | 35.0% |
| AGGATCAAGGTATATGATCA+AGG | - | tig0022248:61663-61682 | Msa1398350:CDS | 35.0% | |
| ! | TGATGACATGAAGTTTTCCA+TGG | + | tig0022248:61773-61792 | None:intergenic | 35.0% |
| TTTGGAAGATAGTTGCTAGT+AGG | - | tig0022248:61937-61956 | Msa1398350:CDS | 35.0% | |
| ATAGTTGCTAGTAGGTGTTT+GGG | - | tig0022248:61945-61964 | Msa1398350:CDS | 35.0% | |
| CTAATTCGGATCAAAGTGAG+TGG | - | tig0022248:60599-60618 | Msa1398350:CDS | 40.0% | |
| TCTGAATCGATACCTCATCA+GGG | + | tig0022248:60711-60730 | None:intergenic | 40.0% | |
| ATCTGAATCGATACCTCATC+AGG | + | tig0022248:60712-60731 | None:intergenic | 40.0% | |
| AAGAAAAGAACTAGGGACGA+CGG | - | tig0022248:60825-60844 | Msa1398350:CDS | 40.0% | |
| TTAGAGGCTTTCTTGGAAAG+AGG | - | tig0022248:61040-61059 | Msa1398350:CDS | 40.0% | |
| TAGAGGCTTTCTTGGAAAGA+GGG | - | tig0022248:61041-61060 | Msa1398350:CDS | 40.0% | |
| ! | GGTGGATGTCTCTATGTTTT+AGG | - | tig0022248:61111-61130 | Msa1398350:CDS | 40.0% |
| !! | GGATGTCTCTATGTTTTAGG+TGG | - | tig0022248:61114-61133 | Msa1398350:CDS | 40.0% |
| TTGATCCGATGCAGAATACA+TGG | - | tig0022248:61175-61194 | Msa1398350:CDS | 40.0% | |
| TTGCTCCATGTATTCTGCAT+CGG | + | tig0022248:61183-61202 | None:intergenic | 40.0% | |
| GACTTCTATGTCTATTGGTC+GGG | - | tig0022248:61206-61225 | Msa1398350:CDS | 40.0% | |
| ! | CAAGCTTTATGTTGTTGGAG+GGG | - | tig0022248:61257-61276 | Msa1398350:CDS | 40.0% |
| GGTTCTTCCAAATGCTTTCT+TGG | - | tig0022248:61386-61405 | Msa1398350:CDS | 40.0% | |
| ACAGGTTTGACAGCATACAT+GGG | - | tig0022248:61432-61451 | Msa1398350:CDS | 40.0% | |
| !!! | TGGCCCTTTTTTGTTGATGT+TGG | - | tig0022248:61486-61505 | Msa1398350:CDS | 40.0% |
| !!! | CCCTTTTTTGTTGATGTTGG+AGG | - | tig0022248:61489-61508 | Msa1398350:CDS | 40.0% |
| TCATGGATAGAAATGCCACT+TGG | - | tig0022248:61537-61556 | Msa1398350:CDS | 40.0% | |
| ! | GATAGAAATGCCACTTGGAA+TGG | - | tig0022248:61542-61561 | Msa1398350:CDS | 40.0% |
| ! | AAATTGAGTGTCGTAGTCGA+TGG | - | tig0022248:61597-61616 | Msa1398350:CDS | 40.0% |
| ATGATCAAGGAGAAGATGCT+TGG | - | tig0022248:61676-61695 | Msa1398350:CDS | 40.0% | |
| GATGCTTGGAAAGTTGTCAT+TGG | - | tig0022248:61690-61709 | Msa1398350:CDS | 40.0% | |
| TGGAAACCAGCAAGTAGATA+AGG | + | tig0022248:61753-61772 | None:intergenic | 40.0% | |
| !! | TATCTACTTGCTGGTTTCCA+TGG | - | tig0022248:61753-61772 | Msa1398350:CDS | 40.0% |
| ! | TCATAACATTGCTGTTCTGC+AGG | - | tig0022248:61806-61825 | Msa1398350:CDS | 40.0% |
| !! | CTTTGTGACAGTGTTGATGA+GGG | + | tig0022248:61870-61889 | None:intergenic | 40.0% |
| !! | ACTTTGTGACAGTGTTGATG+AGG | + | tig0022248:61871-61890 | None:intergenic | 40.0% |
| GATAGTTGCTAGTAGGTGTT+TGG | - | tig0022248:61944-61963 | Msa1398350:CDS | 40.0% | |
| CTAATTCGGATCAAAGTGAG+TGG | - | tig0022248:60599-60618 | Msa1398350:CDS | 40.0% | |
| TCTGAATCGATACCTCATCA+GGG | + | tig0022248:60711-60730 | None:intergenic | 40.0% | |
| ATCTGAATCGATACCTCATC+AGG | + | tig0022248:60712-60731 | None:intergenic | 40.0% | |
| AAGAAAAGAACTAGGGACGA+CGG | - | tig0022248:60825-60844 | Msa1398350:CDS | 40.0% | |
| TTAGAGGCTTTCTTGGAAAG+AGG | - | tig0022248:61040-61059 | Msa1398350:CDS | 40.0% | |
| TAGAGGCTTTCTTGGAAAGA+GGG | - | tig0022248:61041-61060 | Msa1398350:CDS | 40.0% | |
| ! | GGTGGATGTCTCTATGTTTT+AGG | - | tig0022248:61111-61130 | Msa1398350:CDS | 40.0% |
| !! | GGATGTCTCTATGTTTTAGG+TGG | - | tig0022248:61114-61133 | Msa1398350:CDS | 40.0% |
| TTGATCCGATGCAGAATACA+TGG | - | tig0022248:61175-61194 | Msa1398350:CDS | 40.0% | |
| TTGCTCCATGTATTCTGCAT+CGG | + | tig0022248:61183-61202 | None:intergenic | 40.0% | |
| GACTTCTATGTCTATTGGTC+GGG | - | tig0022248:61206-61225 | Msa1398350:CDS | 40.0% | |
| ! | CAAGCTTTATGTTGTTGGAG+GGG | - | tig0022248:61257-61276 | Msa1398350:CDS | 40.0% |
| GGTTCTTCCAAATGCTTTCT+TGG | - | tig0022248:61386-61405 | Msa1398350:CDS | 40.0% | |
| ACAGGTTTGACAGCATACAT+GGG | - | tig0022248:61432-61451 | Msa1398350:CDS | 40.0% | |
| !!! | TGGCCCTTTTTTGTTGATGT+TGG | - | tig0022248:61486-61505 | Msa1398350:CDS | 40.0% |
| !!! | CCCTTTTTTGTTGATGTTGG+AGG | - | tig0022248:61489-61508 | Msa1398350:CDS | 40.0% |
| TCATGGATAGAAATGCCACT+TGG | - | tig0022248:61537-61556 | Msa1398350:CDS | 40.0% | |
| ! | GATAGAAATGCCACTTGGAA+TGG | - | tig0022248:61542-61561 | Msa1398350:CDS | 40.0% |
| ! | AAATTGAGTGTCGTAGTCGA+TGG | - | tig0022248:61597-61616 | Msa1398350:CDS | 40.0% |
| ATGATCAAGGAGAAGATGCT+TGG | - | tig0022248:61676-61695 | Msa1398350:CDS | 40.0% | |
| GATGCTTGGAAAGTTGTCAT+TGG | - | tig0022248:61690-61709 | Msa1398350:CDS | 40.0% | |
| TGGAAACCAGCAAGTAGATA+AGG | + | tig0022248:61753-61772 | None:intergenic | 40.0% | |
| !! | TATCTACTTGCTGGTTTCCA+TGG | - | tig0022248:61753-61772 | Msa1398350:CDS | 40.0% |
| ! | TCATAACATTGCTGTTCTGC+AGG | - | tig0022248:61806-61825 | Msa1398350:CDS | 40.0% |
| !! | CTTTGTGACAGTGTTGATGA+GGG | + | tig0022248:61870-61889 | None:intergenic | 40.0% |
| !! | ACTTTGTGACAGTGTTGATG+AGG | + | tig0022248:61871-61890 | None:intergenic | 40.0% |
| GATAGTTGCTAGTAGGTGTT+TGG | - | tig0022248:61944-61963 | Msa1398350:CDS | 40.0% | |
| GGGAGATTTGGAAACAGTCT+TGG | + | tig0022248:60691-60710 | None:intergenic | 45.0% | |
| GTTTCCAAATCTCCCTGATG+AGG | - | tig0022248:60696-60715 | Msa1398350:CDS | 45.0% | |
| GATACCTCATCAGGGAGATT+TGG | + | tig0022248:60703-60722 | None:intergenic | 45.0% | |
| GGAAGAGTGGCTGTATTTGT+TGG | - | tig0022248:60846-60865 | Msa1398350:CDS | 45.0% | |
| TATCCTCGATCTCGGATCTA+CGG | + | tig0022248:60905-60924 | None:intergenic | 45.0% | |
| TAGATCCGAGATCGAGGATA+TGG | - | tig0022248:60905-60924 | Msa1398350:CDS | 45.0% | |
| AGGGTTCATCTTCTAGGCTT+TGG | - | tig0022248:60977-60996 | Msa1398350:CDS | 45.0% | |
| !! | CATCTTCTAGGCTTTGGATG+TGG | - | tig0022248:60983-61002 | Msa1398350:CDS | 45.0% |
| !! | TAGGCTTTGGATGTGGAACA+TGG | - | tig0022248:60990-61009 | Msa1398350:CDS | 45.0% |
| GATGCAGAATACATGGAGCA+AGG | - | tig0022248:61182-61201 | Msa1398350:CDS | 45.0% | |
| !! | TGAAGAGGTATCAATCCAGC+TGG | + | tig0022248:61294-61313 | None:intergenic | 45.0% |
| ! | GAAGTTTTTGATCCCTCGAC+AGG | - | tig0022248:61321-61340 | Msa1398350:CDS | 45.0% |
| AGAACCTGAGCTCTCGAAAA+CGG | + | tig0022248:61372-61391 | None:intergenic | 45.0% | |
| !! | ATGTCGGCCAAGAAAGCATT+TGG | + | tig0022248:61396-61415 | None:intergenic | 45.0% |
| ! | GGCAATCGGCTTTAACATGT+CGG | + | tig0022248:61412-61431 | None:intergenic | 45.0% |
| ATGTTAAAGCCGATTGCCAC+AGG | - | tig0022248:61414-61433 | Msa1398350:CDS | 45.0% | |
| CATGTATGCTGTCAAACCTG+TGG | + | tig0022248:61433-61452 | None:intergenic | 45.0% | |
| CACAGGTTTGACAGCATACA+TGG | - | tig0022248:61431-61450 | Msa1398350:CDS | 45.0% | |
| GTTTGACAGCATACATGGGA+AGG | - | tig0022248:61436-61455 | Msa1398350:CDS | 45.0% | |
| ! | CCACTGTCCATAGTATTGGA+AGG | + | tig0022248:61642-61661 | None:intergenic | 45.0% |
| CCTTCCAATACTATGGACAG+TGG | - | tig0022248:61639-61658 | Msa1398350:CDS | 45.0% | |
| CCTTCCACTGTCCATAGTAT+TGG | + | tig0022248:61646-61665 | None:intergenic | 45.0% | |
| CCAATACTATGGACAGTGGA+AGG | - | tig0022248:61643-61662 | Msa1398350:CDS | 45.0% | |
| TATGGACAGTGGAAGGATCA+AGG | - | tig0022248:61650-61669 | Msa1398350:CDS | 45.0% | |
| GAGTCTCCTTATCTACTTGC+TGG | - | tig0022248:61744-61763 | Msa1398350:CDS | 45.0% | |
| ATCCAAATTACTGCGCAGCT+CGG | + | tig0022248:61832-61851 | None:intergenic | 45.0% | |
| !! | AGTGTTGATGAGGGTGATGA+TGG | + | tig0022248:61861-61880 | None:intergenic | 45.0% |
| CCAAACAACTGCGTCTGTTT+CGG | + | tig0022248:61922-61941 | None:intergenic | 45.0% | |
| GGGAGATTTGGAAACAGTCT+TGG | + | tig0022248:60691-60710 | None:intergenic | 45.0% | |
| GTTTCCAAATCTCCCTGATG+AGG | - | tig0022248:60696-60715 | Msa1398350:CDS | 45.0% | |
| GATACCTCATCAGGGAGATT+TGG | + | tig0022248:60703-60722 | None:intergenic | 45.0% | |
| GGAAGAGTGGCTGTATTTGT+TGG | - | tig0022248:60846-60865 | Msa1398350:CDS | 45.0% | |
| TATCCTCGATCTCGGATCTA+CGG | + | tig0022248:60905-60924 | None:intergenic | 45.0% | |
| TAGATCCGAGATCGAGGATA+TGG | - | tig0022248:60905-60924 | Msa1398350:CDS | 45.0% | |
| AGGGTTCATCTTCTAGGCTT+TGG | - | tig0022248:60977-60996 | Msa1398350:CDS | 45.0% | |
| !! | CATCTTCTAGGCTTTGGATG+TGG | - | tig0022248:60983-61002 | Msa1398350:CDS | 45.0% |
| !! | TAGGCTTTGGATGTGGAACA+TGG | - | tig0022248:60990-61009 | Msa1398350:CDS | 45.0% |
| GATGCAGAATACATGGAGCA+AGG | - | tig0022248:61182-61201 | Msa1398350:CDS | 45.0% | |
| !! | TGAAGAGGTATCAATCCAGC+TGG | + | tig0022248:61294-61313 | None:intergenic | 45.0% |
| ! | GAAGTTTTTGATCCCTCGAC+AGG | - | tig0022248:61321-61340 | Msa1398350:CDS | 45.0% |
| AGAACCTGAGCTCTCGAAAA+CGG | + | tig0022248:61372-61391 | None:intergenic | 45.0% | |
| !! | ATGTCGGCCAAGAAAGCATT+TGG | + | tig0022248:61396-61415 | None:intergenic | 45.0% |
| ! | GGCAATCGGCTTTAACATGT+CGG | + | tig0022248:61412-61431 | None:intergenic | 45.0% |
| ATGTTAAAGCCGATTGCCAC+AGG | - | tig0022248:61414-61433 | Msa1398350:CDS | 45.0% | |
| CATGTATGCTGTCAAACCTG+TGG | + | tig0022248:61433-61452 | None:intergenic | 45.0% | |
| CACAGGTTTGACAGCATACA+TGG | - | tig0022248:61431-61450 | Msa1398350:CDS | 45.0% | |
| GTTTGACAGCATACATGGGA+AGG | - | tig0022248:61436-61455 | Msa1398350:CDS | 45.0% | |
| ! | CCACTGTCCATAGTATTGGA+AGG | + | tig0022248:61642-61661 | None:intergenic | 45.0% |
| CCTTCCAATACTATGGACAG+TGG | - | tig0022248:61639-61658 | Msa1398350:CDS | 45.0% | |
| CCTTCCACTGTCCATAGTAT+TGG | + | tig0022248:61646-61665 | None:intergenic | 45.0% | |
| CCAATACTATGGACAGTGGA+AGG | - | tig0022248:61643-61662 | Msa1398350:CDS | 45.0% | |
| TATGGACAGTGGAAGGATCA+AGG | - | tig0022248:61650-61669 | Msa1398350:CDS | 45.0% | |
| GAGTCTCCTTATCTACTTGC+TGG | - | tig0022248:61744-61763 | Msa1398350:CDS | 45.0% | |
| ATCCAAATTACTGCGCAGCT+CGG | + | tig0022248:61832-61851 | None:intergenic | 45.0% | |
| !! | AGTGTTGATGAGGGTGATGA+TGG | + | tig0022248:61861-61880 | None:intergenic | 45.0% |
| CCAAACAACTGCGTCTGTTT+CGG | + | tig0022248:61922-61941 | None:intergenic | 45.0% | |
| TCGGATCAAAGTGAGTGGGA+TGG | - | tig0022248:60604-60623 | Msa1398350:CDS | 50.0% | |
| ! | TCAATGTGAGGATGGTGTCG+AGG | - | tig0022248:60761-60780 | Msa1398350:CDS | 50.0% |
| GAAGTCGACTGTCACGAGTT+CGG | - | tig0022248:60789-60808 | Msa1398350:CDS | 50.0% | |
| CTCTGCCATATCCTCGATCT+CGG | + | tig0022248:60913-60932 | None:intergenic | 50.0% | |
| ! | GCTTTGGATGTGGAACATGG+TGG | - | tig0022248:60993-61012 | Msa1398350:CDS | 50.0% |
| ! | TGGATGTGGAACATGGTGGA+AGG | - | tig0022248:60997-61016 | Msa1398350:CDS | 50.0% |
| CCAATAGCACAGCCGCAAAA+GGG | + | tig0022248:61084-61103 | None:intergenic | 50.0% | |
| TCCAATAGCACAGCCGCAAA+AGG | + | tig0022248:61085-61104 | None:intergenic | 50.0% | |
| ! | TGTGCTATTGGAGCTGTTGG+TGG | - | tig0022248:61093-61112 | Msa1398350:CDS | 50.0% |
| GTCGGGCATACTGTAAGACA+GGG | - | tig0022248:61223-61242 | Msa1398350:CDS | 50.0% | |
| !! | GTTGTTGGAGGGGTTAGTCA+AGG | - | tig0022248:61267-61286 | Msa1398350:CDS | 50.0% |
| TTGATCCCTCGACAGGTACA+TGG | - | tig0022248:61328-61347 | Msa1398350:CDS | 50.0% | |
| TCTGACCATGTACCTGTCGA+GGG | + | tig0022248:61336-61355 | None:intergenic | 50.0% | |
| GCTCTCGAAAACGGCATACT+AGG | + | tig0022248:61363-61382 | None:intergenic | 50.0% | |
| !!! | TATGCCGTTTTCGAGAGCTC+AGG | - | tig0022248:61365-61384 | Msa1398350:CDS | 50.0% |
| GCTGTCAAACCTGTGGCAAT+CGG | + | tig0022248:61426-61445 | None:intergenic | 50.0% | |
| TTTAGTACCTGCTTGCCGTG+CGG | + | tig0022248:61580-61599 | None:intergenic | 50.0% | |
| CGGGTCCGCAAATTCTTGTA+AGG | + | tig0022248:61895-61914 | None:intergenic | 50.0% | |
| CCGAAACAGACGCAGTTGTT+TGG | - | tig0022248:61919-61938 | Msa1398350:CDS | 50.0% | |
| ! | TGCTAGTAGGTGTTTGGGAC+AGG | - | tig0022248:61950-61969 | Msa1398350:CDS | 50.0% |
| TCGGATCAAAGTGAGTGGGA+TGG | - | tig0022248:60604-60623 | Msa1398350:CDS | 50.0% | |
| ! | TCAATGTGAGGATGGTGTCG+AGG | - | tig0022248:60761-60780 | Msa1398350:CDS | 50.0% |
| GAAGTCGACTGTCACGAGTT+CGG | - | tig0022248:60789-60808 | Msa1398350:CDS | 50.0% | |
| CTCTGCCATATCCTCGATCT+CGG | + | tig0022248:60913-60932 | None:intergenic | 50.0% | |
| ! | GCTTTGGATGTGGAACATGG+TGG | - | tig0022248:60993-61012 | Msa1398350:CDS | 50.0% |
| ! | TGGATGTGGAACATGGTGGA+AGG | - | tig0022248:60997-61016 | Msa1398350:CDS | 50.0% |
| CCAATAGCACAGCCGCAAAA+GGG | + | tig0022248:61084-61103 | None:intergenic | 50.0% | |
| TCCAATAGCACAGCCGCAAA+AGG | + | tig0022248:61085-61104 | None:intergenic | 50.0% | |
| ! | TGTGCTATTGGAGCTGTTGG+TGG | - | tig0022248:61093-61112 | Msa1398350:CDS | 50.0% |
| GTCGGGCATACTGTAAGACA+GGG | - | tig0022248:61223-61242 | Msa1398350:CDS | 50.0% | |
| !! | GTTGTTGGAGGGGTTAGTCA+AGG | - | tig0022248:61267-61286 | Msa1398350:CDS | 50.0% |
| TTGATCCCTCGACAGGTACA+TGG | - | tig0022248:61328-61347 | Msa1398350:CDS | 50.0% | |
| TCTGACCATGTACCTGTCGA+GGG | + | tig0022248:61336-61355 | None:intergenic | 50.0% | |
| GCTCTCGAAAACGGCATACT+AGG | + | tig0022248:61363-61382 | None:intergenic | 50.0% | |
| !!! | TATGCCGTTTTCGAGAGCTC+AGG | - | tig0022248:61365-61384 | Msa1398350:CDS | 50.0% |
| GCTGTCAAACCTGTGGCAAT+CGG | + | tig0022248:61426-61445 | None:intergenic | 50.0% | |
| TTTAGTACCTGCTTGCCGTG+CGG | + | tig0022248:61580-61599 | None:intergenic | 50.0% | |
| CGGGTCCGCAAATTCTTGTA+AGG | + | tig0022248:61895-61914 | None:intergenic | 50.0% | |
| CCGAAACAGACGCAGTTGTT+TGG | - | tig0022248:61919-61938 | Msa1398350:CDS | 50.0% | |
| ! | TGCTAGTAGGTGTTTGGGAC+AGG | - | tig0022248:61950-61969 | Msa1398350:CDS | 50.0% |
| ! | TGAGGATGGTGTCGAGGAAG+TGG | - | tig0022248:60767-60786 | Msa1398350:CDS | 55.0% |
| AACTAGGGACGACGGAAGAG+TGG | - | tig0022248:60833-60852 | Msa1398350:CDS | 55.0% | |
| ATGCCGTAGATCCGAGATCG+AGG | - | tig0022248:60899-60918 | Msa1398350:CDS | 55.0% | |
| ! | CCCTTTTGCGGCTGTGCTAT+TGG | - | tig0022248:61081-61100 | Msa1398350:CDS | 55.0% |
| ! | GGCTGTGCTATTGGAGCTGT+TGG | - | tig0022248:61090-61109 | Msa1398350:CDS | 55.0% |
| GGTCGGGCATACTGTAAGAC+AGG | - | tig0022248:61222-61241 | Msa1398350:CDS | 55.0% | |
| GTCTGACCATGTACCTGTCG+AGG | + | tig0022248:61337-61356 | None:intergenic | 55.0% | |
| ! | ATGCCACTTGGAATGGGCGA+AGG | - | tig0022248:61549-61568 | Msa1398350:CDS | 55.0% |
| CAACCTTCGCCCATTCCAAG+TGG | + | tig0022248:61555-61574 | None:intergenic | 55.0% | |
| CACTTGGAATGGGCGAAGGT+TGG | - | tig0022248:61553-61572 | Msa1398350:CDS | 55.0% | |
| TTAGTACCTGCTTGCCGTGC+GGG | + | tig0022248:61579-61598 | None:intergenic | 55.0% | |
| ACAAGAATTTGCGGACCCGC+CGG | - | tig0022248:61896-61915 | Msa1398350:CDS | 55.0% | |
| ACAACTGCGTCTGTTTCGGC+CGG | + | tig0022248:61918-61937 | None:intergenic | 55.0% | |
| ! | TGAGGATGGTGTCGAGGAAG+TGG | - | tig0022248:60767-60786 | Msa1398350:CDS | 55.0% |
| AACTAGGGACGACGGAAGAG+TGG | - | tig0022248:60833-60852 | Msa1398350:CDS | 55.0% | |
| ATGCCGTAGATCCGAGATCG+AGG | - | tig0022248:60899-60918 | Msa1398350:CDS | 55.0% | |
| ! | CCCTTTTGCGGCTGTGCTAT+TGG | - | tig0022248:61081-61100 | Msa1398350:CDS | 55.0% |
| ! | GGCTGTGCTATTGGAGCTGT+TGG | - | tig0022248:61090-61109 | Msa1398350:CDS | 55.0% |
| GGTCGGGCATACTGTAAGAC+AGG | - | tig0022248:61222-61241 | Msa1398350:CDS | 55.0% | |
| GTCTGACCATGTACCTGTCG+AGG | + | tig0022248:61337-61356 | None:intergenic | 55.0% | |
| ! | ATGCCACTTGGAATGGGCGA+AGG | - | tig0022248:61549-61568 | Msa1398350:CDS | 55.0% |
| CAACCTTCGCCCATTCCAAG+TGG | + | tig0022248:61555-61574 | None:intergenic | 55.0% | |
| CACTTGGAATGGGCGAAGGT+TGG | - | tig0022248:61553-61572 | Msa1398350:CDS | 55.0% | |
| TTAGTACCTGCTTGCCGTGC+GGG | + | tig0022248:61579-61598 | None:intergenic | 55.0% | |
| ACAAGAATTTGCGGACCCGC+CGG | - | tig0022248:61896-61915 | Msa1398350:CDS | 55.0% | |
| ACAACTGCGTCTGTTTCGGC+CGG | + | tig0022248:61918-61937 | None:intergenic | 55.0% | |
| !! | GGGGTTAGTCAAGGTCCAGC+TGG | - | tig0022248:61276-61295 | Msa1398350:CDS | 60.0% |
| GGCCGAGCTGCGCAGTAATT+TGG | - | tig0022248:61827-61846 | Msa1398350:CDS | 60.0% | |
| !! | GGGGTTAGTCAAGGTCCAGC+TGG | - | tig0022248:61276-61295 | Msa1398350:CDS | 60.0% |
| GGCCGAGCTGCGCAGTAATT+TGG | - | tig0022248:61827-61846 | Msa1398350:CDS | 60.0% | |
| ACTGCGTCTGTTTCGGCCGG+CGG | + | tig0022248:61915-61934 | None:intergenic | 65.0% | |
| ACTGCGTCTGTTTCGGCCGG+CGG | + | tig0022248:61915-61934 | None:intergenic | 65.0% | |
| ! | TGGGCGAAGGTTGGCCCGCA+CGG | - | tig0022248:61562-61581 | Msa1398350:CDS | 70.0% |
| CTGCGTCTGTTTCGGCCGGC+GGG | + | tig0022248:61914-61933 | None:intergenic | 70.0% | |
| ! | TGGGCGAAGGTTGGCCCGCA+CGG | - | tig0022248:61562-61581 | Msa1398350:CDS | 70.0% |
| CTGCGTCTGTTTCGGCCGGC+GGG | + | tig0022248:61914-61933 | None:intergenic | 70.0% | |
| ! | GGTTGGCCCGCACGGCAAGC+AGG | - | tig0022248:61570-61589 | Msa1398350:CDS | 75.0% |
| ! | GGTTGGCCCGCACGGCAAGC+AGG | - | tig0022248:61570-61589 | Msa1398350:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022248 | gene | 60568 | 62007 | 60568 | ID=Msa1398350;Name=Msa1398350 |
| tig0022248 | mRNA | 60568 | 62007 | 60568 | ID=Msa1398350-mRNA-1;Parent=Msa1398350;Name=Msa1398350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|479 |
| tig0022248 | exon | 60568 | 62007 | 60568 | ID=Msa1398350-mRNA-1:exon:16574;Parent=Msa1398350-mRNA-1 |
| tig0022248 | CDS | 60568 | 62007 | 60568 | ID=Msa1398350-mRNA-1:cds;Parent=Msa1398350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
