AlfalfaGEDB | Msa1405400

M. sativa cultivar zhongmu-4 / Msa1405400

KEGG: K14638
GO: GO:0001101 GO:0003674 GO:0005215 GO:0006810 GO:0006857 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009624 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010243 GO:0014070 GO:0015833 GO:0022857 GO:0033993 GO:0035672 GO:0035673 GO:0042221 GO:0042493 GO:0042538 GO:0042742 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043200 GO:0043201 GO:0043207 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0080052 GO:0080053 GO:0097305 GO:0098542 GO:1901698 GO:1901700 GO:1904680
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405400	XP_003590804.1	91.974	623	20	1	1	623	1	593	0.0	1174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405400	sp\|Q9FNL7\|PTR3_ARATH	67.377	610	164	5	7	614	6	582	0.0	829

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405400	G7I4R9	91.974	623	20	1	1	623	1	593	0.0	1174

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa1405400	0.842305	2.804441e-58	-8.615850e-47
Msa0007230	Msa1405400	0.835444	1.671764e-56	-8.615850e-47
Msa0014790	Msa1405400	0.810692	1.015725e-50	-8.615850e-47
Msa0021980	Msa1405400	0.822114	2.816088e-53	-8.615850e-47
Msa0030030	Msa1405400	0.812274	4.603858e-51	-8.615850e-47
Msa0047470	Msa1405400	0.805663	1.197243e-49	-8.615850e-47
Msa0047940	Msa1405400	0.804996	1.651908e-49	-8.615850e-47
Msa0051100	Msa1405400	0.836340	9.908383e-57	-8.615850e-47
Msa0053480	Msa1405400	0.830885	2.282207e-55	-8.615850e-47
Msa0055280	Msa1405400	0.816919	4.315261e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1405400	MtrunA17_Chr1g0187241	91.974	623	20	1	1	623	1	593	1174
Msa1405400	MtrunA17_Chr1g0166711	77.147	617	107	4	1	616	1	584	956
Msa1405400	MtrunA17_Chr1g0166791	69.307	606	152	3	10	613	8	581	881
Msa1405400	MtrunA17_Chr1g0166741	66.288	617	166	5	1	615	3	579	827
Msa1405400	MtrunA17_Chr7g0261771	59.578	616	213	5	8	621	13	594	770
Msa1405400	MtrunA17_Chr7g0261881	57.878	622	225	5	4	620	5	594	769
Msa1405400	MtrunA17_Chr1g0166771	65.225	578	160	4	40	615	5	543	764
Msa1405400	MtrunA17_Chr7g0261811	59.054	613	216	5	4	613	5	585	764
Msa1405400	MtrunA17_Chr1g0166731	79.574	470	93	2	143	611	9	476	761
Msa1405400	MtrunA17_Chr7g0261791	55.929	624	238	5	1	619	4	595	727

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1405400	AT5G46050.1	67.377	610	164	5	7	614	6	582	0.0	829
Msa1405400	AT5G46040.1	63.961	616	184	6	7	620	6	585	0.0	780
Msa1405400	AT5G46050.2	70.402	473	135	4	144	614	1	470	0.0	679
Msa1405400	AT2G40460.1	50.333	600	253	8	1	598	1	557	0.0	595
Msa1405400	AT2G02040.1	42.928	601	298	7	1	591	12	577	8.96e-177	514
Msa1405400	AT3G54140.1	43.163	607	296	8	1	599	1	566	7.69e-175	509
Msa1405400	AT3G54140.2	43.163	607	296	8	1	599	1	566	7.69e-175	509
Msa1405400	AT5G01180.2	42.097	601	294	7	8	596	5	563	2.03e-166	487
Msa1405400	AT5G01180.3	42.097	601	294	7	8	596	5	563	2.03e-166	487
Msa1405400	AT5G01180.1	42.097	601	294	7	8	596	5	563	2.03e-166	487

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Find 147 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGCACAACTAGTCCA+TGG	0.601903	tig0023138:+8902	Msa1405400:CDS
AAACCCAACATATCAACCAT+TGG	0.569968	tig0023138:+7913	Msa1405400:CDS
AAAGCTTGTTCCTTTGTTGT+TGG	0.460711	tig0023138:+3584	Msa1405400:CDS
AAAGTCAATCCTGCTATAAC+TGG	0.384241	tig0023138:+7578	Msa1405400:CDS
AAATGTATATACCTCAATGT+TGG	0.543234	tig0023138:-8318	None:intergenic
AACAATGTCACCAATTGGGT+TGG	0.525729	tig0023138:+4807	Msa1405400:CDS
AACACCCTCTTTGTAAAACA+AGG	0.599751	tig0023138:+9027	Msa1405400:CDS
AAGAGACAAAACAAATGCTA+AGG	0.557028	tig0023138:+8950	Msa1405400:CDS
AAGGAGGAGTACACAGAAGA+TGG	0.498352	tig0023138:+3509	Msa1405400:CDS
AAGTAACAATGTCACCAATT+GGG	0.513695	tig0023138:+4803	Msa1405400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCAATAGAATGCATGTG+GGG	-	tig0023138:3328-3347	None:intergenic	30.0%
GATTATCAATAGAATGCATG+TGG	-	tig0023138:3330-3349	None:intergenic	30.0%
GAGAGAGAGATAAATATTTG+TGG	+	tig0023138:3435-3454	Msa1405400:five_prime_UTR	30.0%
GTTGAGTAAACAAAAGTTGA+AGG	+	tig0023138:3459-3478	Msa1405400:five_prime_UTR	30.0%
CAAAAGTTGAAGGATAACTA+TGG	+	tig0023138:3469-3488	Msa1405400:exon	30.0%
CATGGTGTAACAATTATTCA+TGG	-	tig0023138:3647-3666	None:intergenic	30.0%
ACGAATTGTTTGGAAAAATC+TGG	+	tig0023138:4410-4429	Msa1405400:intron	30.0%
CGAATTGTTTGGAAAAATCT+GGG	+	tig0023138:4411-4430	Msa1405400:intron	30.0%
AAGTAACAATGTCACCAATT+GGG	+	tig0023138:4803-4822	Msa1405400:CDS	30.0%
ATTTGGATGACACCTATATT+AGG	+	tig0023138:4834-4853	Msa1405400:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023138	gene	3303	10042	3303	ID=Msa1405400;Name=Msa1405400
tig0023138	mRNA	3303	10042	3303	ID=Msa1405400-mRNA-1;Parent=Msa1405400;Name=Msa1405400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=185\|0.5\|0.8\|1\|1\|1\|5\|290\|623
tig0023138	exon	3303	3605	3303	ID=Msa1405400-mRNA-1:exon:24101;Parent=Msa1405400-mRNA-1
tig0023138	exon	4709	4926	4709	ID=Msa1405400-mRNA-1:exon:24102;Parent=Msa1405400-mRNA-1
tig0023138	exon	7575	7664	7575	ID=Msa1405400-mRNA-1:exon:24103;Parent=Msa1405400-mRNA-1
tig0023138	exon	7757	8328	7757	ID=Msa1405400-mRNA-1:exon:24104;Parent=Msa1405400-mRNA-1
tig0023138	exon	8879	10042	8879	ID=Msa1405400-mRNA-1:exon:24105;Parent=Msa1405400-mRNA-1
tig0023138	five_prime_UTR	3303	3487	3303	ID=Msa1405400-mRNA-1:five_prime_utr;Parent=Msa1405400-mRNA-1
tig0023138	CDS	3488	3605	3488	ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138	CDS	4709	4926	4709	ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138	CDS	7575	7664	7575	ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138	CDS	7757	8328	7757	ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138	CDS	8879	9752	8879	ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138	three_prime_UTR	9753	10042	9753	ID=Msa1405400-mRNA-1:three_prime_utr;Parent=Msa1405400-mRNA-1

Gene Sequence

>Msa1405400

ATGGAAGAGGGCAGAGTAGTGAAGGAGGAGTACACAGAAGATGGAACTGTGAATCTCAAAGGAAAACCTGTTCTTAGATCCAAAACTGGTGGTTGGAAAGCTTGTTCCTTTGTTGTTGTGTATGAAGTATTTGAAAGAATGGCATATTATGGAATATCATCGAATTTGATCCTCTTCCTCACAAAGAAGCTTCACCAAGGAACAGTGACTGCAAGTAACAATGTCACCAATTGGGTTGGGACCATTTGGATGACACCTATATTAGGTGCTTATGTTGCTGATGCTCACCTTGGTCGTTTTTGGACTTTTCTCATTGCATCCTCCATTTATCTCTCGGTCAAAGTCAATCCTGCTATAACTGGTTTAACTATTATGTCATCAATTTTTAATGATCTCACAGACACTTCTCGGATTAGGCGTGTTCTGGGTATGTCTCTGCTTACACTAGCAGTGTCACTTCCTACCTTGAAGCCACCACAATGCCATGAATTAGATGTAACAAAATGCAAAAAAGCCTCTACATTACAATTAGCTGTGTTTTATGGTGCACTTTACACTCTAGCAATAGGAACAGGTGGAACAAAACCCAACATATCAACCATTGGTGCTGACCAATTTGATGATTTTCACCCTAAAGAAAAATCACATAAACTTTCATTTTTCAATTGGTGGATGTTTAGCATCTTCTTTGGGACCCTTTTTGCTAATACTGTTCTAGTTTATATCCAAGATAATGTAGGGTGGACTCTTGGATATGCTTTACCAACTCTAGGATTAGCAATATCAATTATGATATTCTTGGCAGGAACACCCTTTTATAGACACAAATTGCCTGCAGGGAGTACTTTCACTAGAATGGCTAGGGTTATAGTTGCCTCTTTGAGAAAATGGAAAGTACCTGTTCCTGATGATACTAAAGAACTATATGAACTTGATATGGTAGAGTATGCTAAGAAAGGGAGTAACACTTACAGAATTGATTCCACTCCAACATTGAGGTTCCTAGACAAGGCAAGTGTCAAAACAGGCACAACTAGTCCATGGATGTTATGCACAGTTACACATGTAGAAGAGACAAAACAAATGCTAAGGATGATTCCAATCTTGGTTGCTACATTTGTTCCAAGTACAATGGTGGCTCAAGTAAACACCCTCTTTGTAAAACAAGGAACAACACTTGACAGACACATTGGAAGCTTCAAAATTCCACCAGCAAGTTTAGCTGCATTTGTCACATTGTCCTTGCTTGTTTGTGTAGTGCTCTATGACCGTTTCTTTGTAAGGATTATGCAGAGATTAACCAAGAATCCAAGAGGGATTACCCTTCTTCAAAGAATGGGGATTGGTCTTGTTCTCCACACAATTATTATGGTAGTTGCATCCGTGACAGAAAATTATAGGCTTAGAGTGGCAAAAGAACATGGTTTAGTTGAAAGTGGAGGACAAGTTCCTTTGAGTATTTTCATTTTGCTTCCTCAGTTTATACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCGAAAATCGAGTTTTTCTATGATCAAGCTCCAGAAAGCATGAAGAGTATTGGAACTTCATATTCTTCAACTACATTAGGCATAGGAAATTTCATCAGTTCATTCCTTTTGTCGACTATATCGCGTATAACTAAGGAACATGGTCATAAAGGGTGGATTTTGAACAATCTGAATGATTCTCATCTTGATTACTACTATGCGTTTTTCGCAGTGTTGAACTTCTTGAACTTAATCTTCTTCGCGATCGTTACAAGGCTTTATGTATATAGGGCTGAAGTTTCGGATTCTATAGACATGCTTGCCAATGAACTGAAGGAAAAGAAAGCGGTTAACCATGCGAACCTTATAGAATAA

Protein sequence

>Msa1405400

MEEGRVVKEEYTEDGTVNLKGKPVLRSKTGGWKACSFVVVYEVFERMAYYGISSNLILFLTKKLHQGTVTASNNVTNWVGTIWMTPILGAYVADAHLGRFWTFLIASSIYLSVKVNPAITGLTIMSSIFNDLTDTSRIRRVLGMSLLTLAVSLPTLKPPQCHELDVTKCKKASTLQLAVFYGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAISIMIFLAGTPFYRHKLPAGSTFTRMARVIVASLRKWKVPVPDDTKELYELDMVEYAKKGSNTYRIDSTPTLRFLDKASVKTGTTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMVAQVNTLFVKQGTTLDRHIGSFKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGITLLQRMGIGLVLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYSSTTLGIGNFISSFLLSTISRITKEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLIFFAIVTRLYVYRAEVSDSIDMLANELKEKKAVNHANLIE*