AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405400 MtrunA17_Chr1g0187241 91.974 623 20 1 1 623 1 593 0.0 1174
Msa1405400 MtrunA17_Chr1g0166711 77.147 617 107 4 1 616 1 584 0.0 956
Msa1405400 MtrunA17_Chr1g0166791 69.307 606 152 3 10 613 8 581 0.0 881
Msa1405400 MtrunA17_Chr1g0166741 66.288 617 166 5 1 615 3 579 0.0 827
Msa1405400 MtrunA17_Chr7g0261771 59.578 616 213 5 8 621 13 594 0.0 770
Msa1405400 MtrunA17_Chr7g0261881 57.878 622 225 5 4 620 5 594 0.0 769
Msa1405400 MtrunA17_Chr1g0166771 65.225 578 160 4 40 615 5 543 0.0 764
Msa1405400 MtrunA17_Chr7g0261811 59.054 613 216 5 4 613 5 585 0.0 764
Msa1405400 MtrunA17_Chr1g0166731 79.574 470 93 2 143 611 9 476 0.0 761
Msa1405400 MtrunA17_Chr7g0261791 55.929 624 238 5 1 619 4 595 0.0 727
Msa1405400 MtrunA17_Chr7g0261851 59.060 596 208 5 2 595 6 567 0.0 709
Msa1405400 MtrunA17_Chr7g0261661 61.216 477 178 4 144 615 1 475 0.0 621
Msa1405400 MtrunA17_Chr7g0261751 54.356 528 171 5 8 497 13 508 0.0 585
Msa1405400 MtrunA17_Chr3g0114501 48.780 615 274 6 8 617 4 582 0.0 584
Msa1405400 MtrunA17_Chr8g0375311 43.449 603 296 6 1 593 12 579 2.34e-179 520
Msa1405400 MtrunA17_Chr3g0104011 44.316 607 289 9 1 599 1 566 7.16e-176 511
Msa1405400 MtrunA17_Chr8g0375291 43.049 597 295 5 2 588 13 574 7.62e-175 509
Msa1405400 MtrunA17_Chr7g0241741 41.528 602 307 7 8 602 4 567 1.56e-168 492
Msa1405400 MtrunA17_Chr7g0261731 60.705 369 112 3 8 375 13 349 1.20e-167 482
Msa1405400 MtrunA17_Chr8g0375351 39.394 594 314 5 9 593 23 579 2.67e-164 482
Msa1405400 MtrunA17_Chr4g0005901 41.333 600 304 8 7 596 10 571 5.55e-163 478
Msa1405400 MtrunA17_Chr8g0375321 39.057 594 318 5 8 593 19 576 7.12e-161 473
Msa1405400 MtrunA17_Chr8g0375341 39.189 592 318 4 9 593 23 579 9.63e-161 473
Msa1405400 MtrunA17_Chr8g0375331 39.460 593 317 4 8 593 6 563 3.00e-158 466
Msa1405400 MtrunA17_Chr8g0375361 41.186 590 305 4 11 593 24 578 5.12e-155 458
Msa1405400 MtrunA17_Chr3g0112611 38.526 597 318 10 8 596 14 569 1.89e-144 431
Msa1405400 MtrunA17_Chr7g0240381 38.103 601 313 10 7 596 6 558 2.09e-142 426
Msa1405400 MtrunA17_Chr3g0112671 37.171 608 322 8 8 609 15 568 8.54e-142 424
Msa1405400 MtrunA17_Chr5g0422881 39.078 586 313 9 20 596 14 564 2.00e-138 416
Msa1405400 MtrunA17_Chr4g0008651 36.027 594 331 8 10 596 18 569 1.11e-136 411
Msa1405400 MtrunA17_Chr5g0399061 37.417 604 329 8 2 596 9 572 2.21e-136 410
Msa1405400 MtrunA17_Chr5g0400371 35.630 595 339 7 9 593 95 655 3.38e-133 405
Msa1405400 MtrunA17_Chr3g0077151 37.167 600 308 10 3 596 7 543 5.75e-131 395
Msa1405400 MtrunA17_Chr4g0014791 37.990 587 304 10 14 595 17 548 6.81e-131 395
Msa1405400 MtrunA17_Chr3g0142101 36.027 594 325 10 7 589 10 559 5.37e-130 394
Msa1405400 MtrunA17_Chr4g0014871 36.627 587 317 8 14 596 18 553 5.95e-130 393
Msa1405400 MtrunA17_Chr4g0056431 36.683 627 346 7 3 619 8 593 9.65e-130 394
Msa1405400 MtrunA17_Chr3g0142091 37.752 596 322 10 17 606 17 569 9.68e-130 393
Msa1405400 MtrunA17_Chr4g0054891 34.934 604 342 7 2 593 84 648 1.11e-129 396
Msa1405400 MtrunA17_Chr7g0217461 35.332 617 351 8 9 613 7 587 2.92e-129 392
Msa1405400 MtrunA17_Chr4g0014781 36.379 591 320 7 14 600 17 555 1.10e-127 387
Msa1405400 MtrunA17_Chr5g0399071 37.308 587 327 6 18 596 17 570 6.83e-127 386
Msa1405400 MtrunA17_Chr1g0213711 35.135 592 337 9 8 593 4 554 1.91e-126 385
Msa1405400 MtrunA17_Chr4g0014801 36.519 586 316 7 14 595 17 550 1.31e-125 382
Msa1405400 MtrunA17_Chr4g0014841 36.210 591 319 8 9 595 12 548 3.21e-124 378
Msa1405400 MtrunA17_Chr7g0214461 35.714 602 337 11 10 603 64 623 1.27e-123 379
Msa1405400 MtrunA17_Chr7g0218851 35.050 602 345 9 18 612 38 600 2.30e-123 377
Msa1405400 MtrunA17_Chr8g0353031 38.111 593 295 9 27 602 19 556 4.60e-123 376
Msa1405400 MtrunA17_Chr7g0255621 34.775 601 345 8 7 596 1 565 5.05e-122 374
Msa1405400 MtrunA17_Chr7g0255611 34.194 620 349 12 2 605 12 588 4.05e-121 372
Msa1405400 MtrunA17_Chr5g0415791 35.585 607 341 8 26 618 29 599 9.65e-120 368
Msa1405400 MtrunA17_Chr7g0255601 35.333 600 329 11 14 596 15 572 2.51e-118 365
Msa1405400 MtrunA17_Chr4g0063591 36.913 596 323 7 8 593 4 556 3.02e-118 363
Msa1405400 MtrunA17_Chr7g0214731 34.240 625 356 13 11 621 44 627 2.46e-116 360
Msa1405400 MtrunA17_Chr3g0133341 33.895 593 344 7 22 605 10 563 4.44e-115 355
Msa1405400 MtrunA17_Chr5g0439381 34.405 622 339 9 8 611 9 579 3.61e-114 353
Msa1405400 MtrunA17_Chr2g0284701 33.608 607 346 11 14 598 19 590 1.49e-110 344
Msa1405400 MtrunA17_Chr2g0276751 35.420 607 327 11 6 600 14 567 1.87e-108 338
Msa1405400 MtrunA17_Chr4g0011041 31.034 609 359 10 5 593 11 578 4.67e-105 329
Msa1405400 MtrunA17_Chr8g0362711 33.000 600 345 9 15 597 13 572 1.38e-104 328
Msa1405400 MtrunA17_Chr4g0011471 33.450 571 325 8 37 593 27 556 1.78e-104 328
Msa1405400 MtrunA17_Chr5g0415961 31.000 600 362 8 14 598 12 574 3.21e-100 317
Msa1405400 MtrunA17_Chr4g0014861 38.443 424 248 5 176 595 13 427 7.37e-100 311
Msa1405400 MtrunA17_Chr3g0082631 38.055 473 247 8 143 596 14 459 2.66e-97 306
Msa1405400 MtrunA17_Chr1g0193391 30.185 593 359 10 14 598 3 548 5.97e-97 309
Msa1405400 MtrunA17_Chr7g0271221 30.744 605 368 8 13 612 4 562 1.79e-95 305
Msa1405400 MtrunA17_Chr8g0379971 32.484 628 353 12 7 598 1 593 2.66e-95 305
Msa1405400 MtrunA17_Chr4g0059981 31.068 618 370 8 2 605 15 590 6.47e-95 303
Msa1405400 MtrunA17_Chr4g0060001 33.682 573 325 11 28 586 31 562 7.29e-94 301
Msa1405400 MtrunA17_Chr4g0059991 31.058 586 357 8 31 602 27 579 1.55e-93 300
Msa1405400 MtrunA17_Chr4g0059971 30.533 619 365 11 2 596 7 584 1.01e-92 298
Msa1405400 MtrunA17_Chr7g0240271 29.280 625 388 8 8 620 6 588 1.25e-91 295
Msa1405400 MtrunA17_Chr1g0157601 31.661 578 338 12 30 593 19 553 3.09e-90 290
Msa1405400 MtrunA17_Chr4g0069581 35.438 491 292 8 138 621 68 540 3.14e-89 287
Msa1405400 MtrunA17_Chr8g0390331 29.776 581 355 8 25 593 14 553 1.37e-88 286
Msa1405400 MtrunA17_Chr8g0362781 29.313 597 367 9 19 597 23 582 3.81e-88 285
Msa1405400 MtrunA17_Chr8g0362801 33.475 469 296 6 144 600 1 465 1.38e-86 278
Msa1405400 MtrunA17_Chr1g0147631 29.451 601 362 12 8 593 11 564 2.35e-83 273
Msa1405400 MtrunA17_Chr2g0331471 30.146 617 362 13 26 620 88 657 1.36e-82 274
Msa1405400 MtrunA17_Chr2g0331511 30.308 617 358 15 26 617 21 590 8.45e-82 270
Msa1405400 MtrunA17_Chr7g0240281 30.465 581 358 6 26 594 24 570 1.07e-81 268
Msa1405400 MtrunA17_Chr8g0379991 31.281 601 329 13 47 598 1 566 1.48e-81 268
Msa1405400 MtrunA17_Chr2g0331521 27.367 581 370 9 26 593 22 563 1.27e-79 263
Msa1405400 MtrunA17_Chr2g0331481 30.744 618 356 16 26 620 26 594 3.66e-79 263
Msa1405400 MtrunA17_Chr4g0003761 30.066 602 366 13 22 610 27 586 1.60e-78 260
Msa1405400 MtrunA17_Chr7g0261721 58.500 200 83 0 400 599 5 204 2.36e-78 248
Msa1405400 MtrunA17_Chr1g0157611 28.523 596 367 13 14 593 2 554 4.70e-78 258
Msa1405400 MtrunA17_Chr7g0235521 32.777 479 296 7 144 602 1 473 1.10e-77 254
Msa1405400 MtrunA17_Chr7g0240181 32.568 479 297 7 144 602 1 473 4.14e-76 251
Msa1405400 MtrunA17_Chr7g0240211 32.568 479 297 7 144 602 1 473 4.46e-76 250
Msa1405400 MtrunA17_Chr7g0240131 32.359 479 298 7 144 602 1 473 6.30e-76 250
Msa1405400 MtrunA17_Chr1g0157621 31.306 559 321 14 47 587 1 514 7.48e-76 252
Msa1405400 MtrunA17_Chr6g0451841 33.180 434 250 11 190 602 127 541 2.48e-75 250
Msa1405400 MtrunA17_Chr2g0331461 29.038 613 374 12 26 621 26 594 1.68e-71 243
Msa1405400 MtrunA17_Chr7g0240151 31.733 479 283 8 144 602 1 455 4.24e-71 237
Msa1405400 MtrunA17_Chr2g0326211 27.257 587 351 12 27 596 20 547 1.09e-69 235
Msa1405400 MtrunA17_Chr5g0415841 30.704 469 305 7 144 599 1 462 1.91e-68 230
Msa1405400 MtrunA17_Chr3g0142111 36.280 328 173 4 14 340 34 326 1.19e-67 224
Msa1405400 MtrunA17_Chr2g0325961 27.197 603 363 11 14 596 2 548 4.24e-66 226
Msa1405400 MtrunA17_Chr3g0112631 37.584 298 171 6 333 622 3 293 2.37e-65 216
Msa1405400 MtrunA17_Chr1g0177591 27.787 601 356 17 8 593 27 564 2.41e-65 224
Msa1405400 MtrunA17_Chr2g0325951 27.575 602 361 10 14 596 2 547 2.86e-65 224
Msa1405400 MtrunA17_Chr1g0166721 77.686 121 24 2 1 119 1 120 1.10e-59 196
Msa1405400 MtrunA17_Chr7g0234381 32.018 456 268 8 143 598 3 416 4.38e-59 203
Msa1405400 MtrunA17_Chr7g0234151 32.456 456 266 8 143 598 3 416 2.24e-58 201
Msa1405400 MtrunA17_Chr7g0234181 32.230 453 265 8 146 598 1 411 3.04e-57 198
Msa1405400 MtrunA17_Chr1g0177611 29.032 434 277 9 173 593 20 435 1.96e-56 197
Msa1405400 MtrunA17_Chr7g0261831 58.974 156 60 3 286 439 1 154 3.17e-55 186
Msa1405400 MtrunA17_Chr1g0177631 29.655 435 273 10 173 593 20 435 1.47e-54 192
Msa1405400 MtrunA17_Chr4g0060071 33.670 297 194 2 302 597 5 299 2.04e-54 187
Msa1405400 MtrunA17_Chr3g0142121 37.308 260 150 5 334 589 11 261 4.08e-51 178
Msa1405400 MtrunA17_Chr7g0261671 68.868 106 33 0 8 113 14 119 3.48e-50 169
Msa1405400 MtrunA17_Chr3g0112651 40.828 169 95 1 143 311 21 184 7.82e-42 150
Msa1405400 MtrunA17_Chr1g0147591 32.487 197 107 4 187 368 10 195 6.37e-27 108
Msa1405400 MtrunA17_Chr4g0014851 47.000 100 53 0 14 113 18 117 1.98e-25 102
Msa1405400 MtrunA17_Chr4g0060061 40.496 121 72 0 169 289 8 128 2.34e-24 99.0
Msa1405400 MtrunA17_Chr3g0112661 43.810 105 59 0 11 115 16 120 1.43e-22 94.0
Msa1405400 MtrunA17_Chr7g0261821 53.731 67 31 0 534 600 1 67 9.96e-22 89.0
Msa1405400 MtrunA17_Chr4g0060051 39.450 109 62 1 1 109 1 105 3.23e-18 81.3
Msa1405400 MtrunA17_Chr2g0326221 26.126 222 134 4 376 596 31 223 1.22e-17 82.4
Msa1405400 MtrunA17_Chr8g0362791 41.176 85 50 0 31 115 41 125 9.24e-16 74.7
Msa1405400 MtrunA17_Chr3g0082621 45.833 72 39 0 42 113 2 73 1.64e-14 69.3
Msa1405400 MtrunA17_Chr7g0261841 55.556 54 23 1 144 196 1 54 2.13e-13 66.2
Msa1405400 MtrunA17_Chr8g0382601 38.356 73 44 1 239 310 1 73 8.42e-12 61.6
Msa1405400 MtrunA17_Chr1g0166761 69.231 39 10 1 1 39 3 39 2.85e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405400 AT5G46050.1 67.377 610 164 5 7 614 6 582 0.0 829
Msa1405400 AT5G46040.1 63.961 616 184 6 7 620 6 585 0.0 780
Msa1405400 AT5G46050.2 70.402 473 135 4 144 614 1 470 0.0 679
Msa1405400 AT2G40460.1 50.333 600 253 8 1 598 1 557 0.0 595
Msa1405400 AT2G02040.1 42.928 601 298 7 1 591 12 577 8.96e-177 514
Msa1405400 AT3G54140.1 43.163 607 296 8 1 599 1 566 7.69e-175 509
Msa1405400 AT3G54140.2 43.163 607 296 8 1 599 1 566 7.69e-175 509
Msa1405400 AT5G01180.2 42.097 601 294 7 8 596 5 563 2.03e-166 487
Msa1405400 AT5G01180.3 42.097 601 294 7 8 596 5 563 2.03e-166 487
Msa1405400 AT5G01180.1 42.097 601 294 7 8 596 5 563 2.03e-166 487
Msa1405400 AT1G62200.1 40.362 607 305 6 1 590 15 581 1.77e-165 486
Msa1405400 AT1G62200.2 38.801 634 306 7 1 590 15 610 1.57e-161 476
Msa1405400 AT1G62200.3 38.801 634 306 7 1 590 29 624 2.52e-161 476
Msa1405400 AT2G02020.1 39.292 593 285 8 3 588 14 538 7.70e-152 449
Msa1405400 AT3G54450.1 39.394 594 300 9 26 609 11 554 5.91e-146 434
Msa1405400 AT3G53960.1 38.462 611 323 8 8 608 17 584 1.68e-145 435
Msa1405400 AT2G37900.1 35.343 597 332 6 8 597 18 567 3.30e-136 410
Msa1405400 AT2G02020.2 36.762 593 279 9 3 588 14 517 2.88e-134 403
Msa1405400 AT1G32450.1 35.738 596 340 6 9 593 18 581 9.19e-132 400
Msa1405400 AT1G22540.1 37.983 595 306 11 16 604 18 555 8.90e-131 395
Msa1405400 AT1G12110.1 38.372 602 319 9 18 604 17 581 1.07e-130 396
Msa1405400 AT1G72140.1 36.557 610 308 11 2 597 9 553 5.77e-126 383
Msa1405400 AT1G68570.1 36.120 634 355 10 1 623 1 595 2.49e-125 383
Msa1405400 AT2G26690.1 37.171 608 325 7 8 604 4 565 9.16e-124 378
Msa1405400 AT1G68570.2 36.762 593 330 7 42 623 7 565 2.76e-123 376
Msa1405400 AT1G22570.1 37.148 603 324 10 2 596 5 560 9.10e-123 375
Msa1405400 AT5G13400.1 35.678 597 340 9 17 601 52 616 1.35e-117 363
Msa1405400 AT2G37900.2 35.768 534 289 6 71 597 2 488 1.66e-117 359
Msa1405400 AT4G21680.1 33.663 606 352 7 9 600 9 578 1.04e-116 360
Msa1405400 AT2G26690.2 37.282 574 303 7 42 604 5 532 7.22e-115 354
Msa1405400 AT1G72130.1 34.375 576 310 8 24 595 21 532 9.68e-115 353
Msa1405400 AT1G59740.1 36.000 600 335 8 2 591 12 572 4.24e-114 353
Msa1405400 AT5G19640.1 35.334 583 318 13 29 603 60 591 3.15e-113 352
Msa1405400 AT1G22570.2 37.300 563 299 9 42 596 7 523 3.49e-113 349
Msa1405400 AT1G72125.1 36.348 597 324 10 7 596 9 556 2.54e-112 348
Msa1405400 AT2G26690.3 37.168 565 298 7 51 604 2 520 8.79e-112 345
Msa1405400 AT3G21670.1 35.859 594 318 6 18 599 19 561 1.66e-111 347
Msa1405400 AT1G69870.1 33.717 608 350 8 25 621 48 613 2.40e-111 347
Msa1405400 AT1G72120.1 36.913 596 318 10 7 596 9 552 1.20e-110 343
Msa1405400 AT1G33440.1 34.510 623 341 13 9 612 19 593 1.05e-105 332
Msa1405400 AT1G69850.1 32.097 620 360 9 7 602 3 585 1.39e-105 331
Msa1405400 AT1G27040.1 32.131 582 361 3 14 595 13 560 1.01e-103 326
Msa1405400 AT1G27040.2 32.131 582 361 3 14 595 9 556 1.13e-103 325
Msa1405400 AT1G27040.3 31.729 561 349 3 35 595 2 528 5.51e-97 307
Msa1405400 AT3G16180.1 31.356 590 347 11 22 593 16 565 8.41e-97 308
Msa1405400 AT1G22550.1 39.019 428 232 9 179 596 151 559 5.81e-96 305
Msa1405400 AT1G22550.1 46.226 106 56 1 2 107 5 109 1.11e-21 99.8
Msa1405400 AT1G52190.1 30.324 587 351 10 26 593 19 566 3.08e-94 302
Msa1405400 AT1G18880.1 32.040 593 346 11 31 605 22 575 3.41e-93 299
Msa1405400 AT1G27080.1 32.192 584 338 9 26 597 12 549 1.18e-91 295
Msa1405400 AT1G72130.2 35.417 432 252 5 168 595 6 414 6.74e-90 285
Msa1405400 AT1G72130.3 35.417 432 252 5 168 595 6 414 6.74e-90 285
Msa1405400 AT5G62680.1 31.360 625 367 13 4 609 24 605 1.01e-88 288
Msa1405400 AT5G28470.2 30.717 586 347 11 24 596 13 552 4.36e-88 285
Msa1405400 AT5G14940.1 30.333 600 342 13 26 604 5 549 1.68e-87 283
Msa1405400 AT3G47960.1 32.423 586 337 13 31 597 64 609 1.78e-85 280
Msa1405400 AT5G62730.1 29.431 598 357 8 14 598 42 587 3.79e-85 278
Msa1405400 AT5G28470.1 30.546 586 346 12 24 596 13 550 4.42e-85 277
Msa1405400 AT3G45650.1 30.100 598 369 9 12 608 6 555 7.22e-85 276
Msa1405400 AT3G25260.1 32.143 588 317 13 5 587 2 512 5.60e-84 273
Msa1405400 AT1G27080.2 32.007 553 318 9 57 597 1 507 7.14e-82 268
Msa1405400 AT3G45710.1 30.705 596 344 15 28 611 21 559 1.71e-80 265
Msa1405400 AT3G45700.1 30.637 581 339 14 27 601 15 537 3.20e-80 264
Msa1405400 AT5G62730.2 29.239 578 344 8 34 598 3 528 2.03e-79 261
Msa1405400 AT3G45650.2 28.846 624 369 10 12 608 6 581 2.59e-79 262
Msa1405400 AT3G45720.1 30.612 588 335 15 28 602 19 546 6.82e-78 258
Msa1405400 AT3G45680.1 30.574 592 345 17 14 596 8 542 4.96e-76 253
Msa1405400 AT3G45660.1 28.897 571 355 9 28 596 21 542 1.42e-75 252
Msa1405400 AT3G45660.3 28.897 571 355 9 28 596 21 542 1.42e-75 252
Msa1405400 AT3G01350.1 28.713 606 351 13 25 601 3 556 2.34e-75 251
Msa1405400 AT3G45660.2 28.793 580 362 9 19 596 33 563 3.18e-75 251
Msa1405400 AT3G25280.1 29.863 586 344 10 9 593 2 521 3.86e-75 249
Msa1405400 AT1G69860.1 29.432 581 353 9 26 596 16 549 2.25e-74 248
Msa1405400 AT3G45690.1 28.425 584 318 18 27 604 17 506 3.64e-66 226
Msa1405400 AT5G11570.1 27.041 588 308 14 14 593 2 476 3.91e-62 214
Msa1405400 AT2G38100.2 26.846 447 288 10 176 609 76 496 2.89e-38 148
Msa1405400 AT2G38100.1 26.846 447 288 10 176 609 92 512 5.78e-38 148
Msa1405400 AT2G38100.3 26.846 447 288 10 176 609 98 518 8.26e-38 147

Find 147 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACTCTTCATGCTTTC+TGG 0.066053 tig0023138:-9429 None:intergenic
GCTTCCTCAGTTTATACTTA+TGG 0.141612 tig0023138:+9350 Msa1405400:CDS
GGTAATCCCTCTTGGATTCT+TGG 0.231736 tig0023138:-9181 None:intergenic
AGGCAATTTGTGTCTATAAA+AGG 0.238778 tig0023138:-8142 None:intergenic
TTTGAAAGAATGGCATATTA+TGG 0.240890 tig0023138:+4720 Msa1405400:CDS
TAGTTGCCTCTTTGAGAAAA+TGG 0.247765 tig0023138:+8199 Msa1405400:CDS
CTTCCTCAGTTTATACTTAT+GGG 0.256695 tig0023138:+9351 Msa1405400:CDS
CATCCGTGACAGAAAATTAT+AGG 0.268828 tig0023138:+9259 Msa1405400:CDS
TGTTCTCCACACAATTATTA+TGG 0.272669 tig0023138:+9230 Msa1405400:CDS
CTAGAACAGTATTAGCAAAA+AGG 0.279901 tig0023138:-8026 None:intergenic
TGGATGTTTAGCATCTTCTT+TGG 0.287426 tig0023138:+8000 Msa1405400:CDS
AATATCAATTATGATATTCT+TGG 0.288500 tig0023138:+8110 Msa1405400:CDS
ATTTCTTACCGAGAGATAAA+TGG 0.296351 tig0023138:-4913 None:intergenic
TTACAAGGCTTTATGTATAT+AGG 0.298536 tig0023138:+9646 Msa1405400:CDS
ATGCAATAACTTATTCTATA+AGG 0.305469 tig0023138:-9740 None:intergenic
ATTTGGATGACACCTATATT+AGG 0.308097 tig0023138:+4834 Msa1405400:CDS
TTCTCGGATTAGGCGTGTTC+TGG 0.309363 tig0023138:+7643 Msa1405400:CDS
GCTAAGGATGATTCCAATCT+TGG 0.317325 tig0023138:+8966 Msa1405400:CDS
AGCTTTCCAACCACCAGTTT+TGG 0.319121 tig0023138:-3567 None:intergenic
TAGGGTGAAAATCATCAAAT+TGG 0.324030 tig0023138:-7942 None:intergenic
ACTAAGGAACATGGTCATAA+AGG 0.332144 tig0023138:+9528 Msa1405400:CDS
CCAATTGGGTTGGGACCATT+TGG 0.334713 tig0023138:+4817 Msa1405400:CDS
ATGAATAAAATGAGCTCAAA+AGG 0.343256 tig0023138:-9935 None:intergenic
GGATGTTTAGCATCTTCTTT+GGG 0.346262 tig0023138:+8001 Msa1405400:CDS
TACAAGGCTTTATGTATATA+GGG 0.346655 tig0023138:+9647 Msa1405400:CDS
TGTATATAGGGCTGAAGTTT+CGG 0.360555 tig0023138:+9659 Msa1405400:CDS
AGAATATCAAGGAAATTATA+TGG 0.370727 tig0023138:+9995 Msa1405400:three_prime_UTR
AGAACTATATGAACTTGATA+TGG 0.372923 tig0023138:+8248 Msa1405400:CDS
GCAACATAAGCACCTAATAT+AGG 0.383360 tig0023138:-4846 None:intergenic
AAAGTCAATCCTGCTATAAC+TGG 0.384241 tig0023138:+7578 Msa1405400:CDS
ATGATCTCACAGACACTTCT+CGG 0.387748 tig0023138:+7627 Msa1405400:CDS
TCTATGACCGTTTCTTTGTA+AGG 0.389056 tig0023138:+9142 Msa1405400:CDS
ACTTGAGCCACCATTGTACT+TGG 0.390318 tig0023138:-9003 None:intergenic
CAAGTAACAATGTCACCAAT+TGG 0.391039 tig0023138:+4802 Msa1405400:CDS
TCATATTCTTCAACTACATT+AGG 0.391852 tig0023138:+9456 Msa1405400:CDS
CAAAAGTTGAAGGATAACTA+TGG 0.405149 tig0023138:+3469 Msa1405400:exon
ATAAGTTATTGCATCTATAT+AGG 0.409064 tig0023138:+9749 Msa1405400:exon
CCTGTTCTTAGATCCAAAAC+TGG 0.409508 tig0023138:+3554 Msa1405400:CDS
TATAGTTCTTTAGTATCATC+AGG 0.412300 tig0023138:-8234 None:intergenic
ACAAATGTAGCAACCAAGAT+TGG 0.425089 tig0023138:-8979 None:intergenic
CAATCCCCATTCTTTGAAGA+AGG 0.427035 tig0023138:-9203 None:intergenic
GCACCAATGGTTGATATGTT+GGG 0.427910 tig0023138:-7916 None:intergenic
AGCACCAATGGTTGATATGT+TGG 0.430741 tig0023138:-7917 None:intergenic
ATTACCCTTCTTCAAAGAAT+GGG 0.431335 tig0023138:+9198 Msa1405400:CDS
TGAAGAAGGGTAATCCCTCT+TGG 0.431813 tig0023138:-9189 None:intergenic
GAACATGGTTTAGTTGAAAG+TGG 0.432350 tig0023138:+9297 Msa1405400:CDS
CTAAGGAACATGGTCATAAA+GGG 0.434102 tig0023138:+9529 Msa1405400:CDS
TTGAAGGATAACTATGGAAG+AGG 0.437888 tig0023138:+3475 Msa1405400:exon
GCACTTTACACTCTAGCAAT+AGG 0.438872 tig0023138:+7877 Msa1405400:CDS
ATGGCATTGTGGTGGCTTCA+AGG 0.445113 tig0023138:-7794 None:intergenic
GACTATATCGCGTATAACTA+AGG 0.445944 tig0023138:+9512 Msa1405400:CDS
TTCTCTTCTTTCCTATCCAA+GGG 0.446411 tig0023138:+3351 Msa1405400:five_prime_UTR
GAGAGAGAGATAAATATTTG+TGG 0.452040 tig0023138:+3435 Msa1405400:five_prime_UTR
TCTTCTTCGCGATCGTTACA+AGG 0.453598 tig0023138:+9631 Msa1405400:CDS
TGCATCCTCCATTTATCTCT+CGG 0.456345 tig0023138:+4905 Msa1405400:CDS
ATATATAGATATAACAACTT+TGG 0.458155 tig0023138:-9796 None:intergenic
GATTACCCTTCTTCAAAGAA+TGG 0.458294 tig0023138:+9197 Msa1405400:CDS
ATGGTAGAGTATGCTAAGAA+AGG 0.458973 tig0023138:+8267 Msa1405400:CDS
AAAGCTTGTTCCTTTGTTGT+TGG 0.460711 tig0023138:+3584 Msa1405400:CDS
TACTTGCAGTCACTGTTCCT+TGG 0.461462 tig0023138:-4785 None:intergenic
CCAAATGGTCCCAACCCAAT+TGG 0.463312 tig0023138:-4817 None:intergenic
ACAAATGCAGCTAAACTTGC+TGG 0.466855 tig0023138:-9090 None:intergenic
GATAATGTAGGGTGGACTCT+TGG 0.468721 tig0023138:+8060 Msa1405400:CDS
TACACTCTAGCAATAGGAAC+AGG 0.472265 tig0023138:+7883 Msa1405400:CDS
TCTTTAGTATCATCAGGAAC+AGG 0.472294 tig0023138:-8228 None:intergenic
TTTCTCTTCTTTCCTATCCA+AGG 0.473037 tig0023138:+3350 Msa1405400:five_prime_UTR
GGCAATTTGTGTCTATAAAA+GGG 0.473662 tig0023138:-8141 None:intergenic
CCAGAAAGCATGAAGAGTAT+TGG 0.475085 tig0023138:+9429 Msa1405400:CDS
TGGTAGAGTATGCTAAGAAA+GGG 0.477116 tig0023138:+8268 Msa1405400:CDS
ATCAAATTGGTCAGCACCAA+TGG 0.477753 tig0023138:-7929 None:intergenic
GACAAGGCAAGTGTCAAAAC+AGG 0.484313 tig0023138:+8886 Msa1405400:CDS
TCACAGACACTTCTCGGATT+AGG 0.484393 tig0023138:+7633 Msa1405400:CDS
GAGTCCACCCTACATTATCT+TGG 0.488116 tig0023138:-8056 None:intergenic
GTATGAAGTATTTGAAAGAA+TGG 0.490979 tig0023138:+4710 Msa1405400:CDS
GTTGAGTAAACAAAAGTTGA+AGG 0.493147 tig0023138:+3459 Msa1405400:five_prime_UTR
GAAGCTTCTTTGTGAGGAAG+AGG 0.495772 tig0023138:-4761 None:intergenic
AAGGAGGAGTACACAGAAGA+TGG 0.498352 tig0023138:+3509 Msa1405400:CDS
TATAGACACAAATTGCCTGC+AGG 0.499408 tig0023138:+8147 Msa1405400:CDS
AGAGGGCAGAGTAGTGAAGG+AGG 0.501220 tig0023138:+3493 Msa1405400:CDS
TAATATAGGTGTCATCCAAA+TGG 0.502308 tig0023138:-4832 None:intergenic
GCATAATCCTTACAAAGAAA+CGG 0.503299 tig0023138:-9149 None:intergenic
GTTTATATCCAAGATAATGT+AGG 0.508581 tig0023138:+8048 Msa1405400:CDS
GGATATGCTTTACCAACTCT+AGG 0.512162 tig0023138:+8081 Msa1405400:CDS
AAGTAACAATGTCACCAATT+GGG 0.513695 tig0023138:+4803 Msa1405400:CDS
TCAATTATGATATTCTTGGC+AGG 0.514039 tig0023138:+8114 Msa1405400:CDS
TACTTTCACTAGAATGGCTA+GGG 0.514636 tig0023138:+8173 Msa1405400:CDS
TTAGATCCAAAACTGGTGGT+TGG 0.517084 tig0023138:+3561 Msa1405400:CDS
GATATTGCTAATCCTAGAGT+TGG 0.517407 tig0023138:-8093 None:intergenic
ATAGTTAAACCAGTTATAGC+AGG 0.517679 tig0023138:-7587 None:intergenic
CTTGGTGAAGCTTCTTTGTG+AGG 0.518141 tig0023138:-4767 None:intergenic
AGGGAGTACTTTCACTAGAA+TGG 0.522005 tig0023138:+8167 Msa1405400:CDS
TGCTCTTAGGTCCCTTGGAT+AGG 0.522347 tig0023138:-3362 None:intergenic
TACGCGATATAGTCGACAAA+AGG 0.523532 tig0023138:-9503 None:intergenic
GTACTTTCACTAGAATGGCT+AGG 0.525257 tig0023138:+8172 Msa1405400:CDS
AACAATGTCACCAATTGGGT+TGG 0.525729 tig0023138:+4807 Msa1405400:CDS
ACAATGTCACCAATTGGGTT+GGG 0.534361 tig0023138:+4808 Msa1405400:CDS
CTTAGAGTGGCAAAAGAACA+TGG 0.538649 tig0023138:+9282 Msa1405400:CDS
CTTCTTCAAAGAATGGGGAT+TGG 0.539956 tig0023138:+9204 Msa1405400:CDS
AAATGTATATACCTCAATGT+TGG 0.543234 tig0023138:-8318 None:intergenic
TATGTTGCTGATGCTCACCT+TGG 0.550523 tig0023138:+4861 Msa1405400:CDS
TTTATATCCAAGATAATGTA+GGG 0.553143 tig0023138:+8049 Msa1405400:CDS
TTGATTCCACTCCAACATTG+AGG 0.553607 tig0023138:+8307 Msa1405400:CDS
CACAGCTAATTGTAATGTAG+AGG 0.555926 tig0023138:-7845 None:intergenic
AAGAGACAAAACAAATGCTA+AGG 0.557028 tig0023138:+8950 Msa1405400:CDS
GGAAGAGGGCAGAGTAGTGA+AGG 0.558901 tig0023138:+3490 Msa1405400:CDS
CTTATTCTATAAGGTTCGCA+TGG 0.561389 tig0023138:-9731 None:intergenic
TCTTCAACTACATTAGGCAT+AGG 0.562497 tig0023138:+9462 Msa1405400:CDS
TGAATAAAATGAGCTCAAAA+GGG 0.563391 tig0023138:-9934 None:intergenic
ATAGACACAAATTGCCTGCA+GGG 0.564786 tig0023138:+8148 Msa1405400:CDS
CTAGTGAAAGTACTCCCTGC+AGG 0.565881 tig0023138:-8162 None:intergenic
CATTGTGGTGGCTTCAAGGT+AGG 0.568165 tig0023138:-7790 None:intergenic
AAACCCAACATATCAACCAT+TGG 0.569968 tig0023138:+7913 Msa1405400:CDS
ACAACACTTGACAGACACAT+TGG 0.573195 tig0023138:+9051 Msa1405400:CDS
TACATTTGTTCCAAGTACAA+TGG 0.576794 tig0023138:+8993 Msa1405400:CDS
AATCCCCATTCTTTGAAGAA+GGG 0.582506 tig0023138:-9202 None:intergenic
TTACCCTTCTTCAAAGAATG+GGG 0.585217 tig0023138:+9199 Msa1405400:CDS
AGCAAAATGAAAATACTCAA+AGG 0.587653 tig0023138:-9330 None:intergenic
GATTATCAATAGAATGCATG+TGG 0.589368 tig0023138:-3327 None:intergenic
CATGCTTGCCAATGAACTGA+AGG 0.590151 tig0023138:+9692 Msa1405400:CDS
GATGGAACTGTGAATCTCAA+AGG 0.591833 tig0023138:+3527 Msa1405400:CDS
ATTATTTAGGTTCCTAGACA+AGG 0.594422 tig0023138:+8870 Msa1405400:intron
AACACCCTCTTTGTAAAACA+AGG 0.599751 tig0023138:+9027 Msa1405400:CDS
ATTATCAATAGAATGCATGT+GGG 0.601491 tig0023138:-3326 None:intergenic
AAACAGGCACAACTAGTCCA+TGG 0.601903 tig0023138:+8902 Msa1405400:CDS
TGAAGGATAACTATGGAAGA+GGG 0.606507 tig0023138:+3476 Msa1405400:exon
GTAACTGTGCATAACATCCA+TGG 0.611443 tig0023138:-8919 None:intergenic
AGGAACATGGTCATAAAGGG+TGG 0.616187 tig0023138:+9532 Msa1405400:CDS
AATGCAGCTAAACTTGCTGG+TGG 0.617774 tig0023138:-9087 None:intergenic
TATATACCTCAATGTTGGAG+TGG 0.619929 tig0023138:-8313 None:intergenic
TCTAATTCATGGCATTGTGG+TGG 0.621164 tig0023138:-7802 None:intergenic
ACTCTAGCAATAGGAACAGG+TGG 0.624774 tig0023138:+7886 Msa1405400:CDS
AGAAAATTATAGGCTTAGAG+TGG 0.632729 tig0023138:+9269 Msa1405400:CDS
ACATCTAATTCATGGCATTG+TGG 0.635027 tig0023138:-7805 None:intergenic
ATTTGTTCCAAGTACAATGG+TGG 0.636724 tig0023138:+8996 Msa1405400:CDS
CAACTACCATAATAATTGTG+TGG 0.639450 tig0023138:-9236 None:intergenic
TCTTACCGAGAGATAAATGG+AGG 0.642713 tig0023138:-4910 None:intergenic
GTTCTTAGATCCAAAACTGG+TGG 0.657227 tig0023138:+3557 Msa1405400:CDS
CATGGTTTAGTTGAAAGTGG+AGG 0.662978 tig0023138:+9300 Msa1405400:CDS
GAGCACTACACAAACAAGCA+AGG 0.664656 tig0023138:-9121 None:intergenic
TGAACTGAAGGAAAAGAAAG+CGG 0.669979 tig0023138:+9704 Msa1405400:CDS
CTCACAAAGAAGCTTCACCA+AGG 0.674743 tig0023138:+4768 Msa1405400:CDS
TCGCGTATAACTAAGGAACA+TGG 0.677015 tig0023138:+9519 Msa1405400:CDS
GATTAACCAAGAATCCAAGA+GGG 0.678167 tig0023138:+9175 Msa1405400:CDS
TTATCAATAGAATGCATGTG+GGG 0.684070 tig0023138:-3325 None:intergenic
AGATTAACCAAGAATCCAAG+AGG 0.693948 tig0023138:+9174 Msa1405400:CDS
GTTCCCATAAGTATAAACTG+AGG 0.698344 tig0023138:-9354 None:intergenic
ATATCCAAGATAATGTAGGG+TGG 0.707851 tig0023138:+8052 Msa1405400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTAAAATTTTAA+AGG + tig0023138:6113-6132 Msa1405400:intron 0.0%
!!! AAATTTTTTTATATTCTTCA+TGG + tig0023138:5439-5458 Msa1405400:intron 10.0%
!!! TTTTTTCTTTATTTTATGAA+AGG + tig0023138:5907-5926 Msa1405400:intron 10.0%
!! GTAATAAAAAATAATTAAGT+TGG + tig0023138:6436-6455 Msa1405400:intron 10.0%
!! TTATTATTAAATACAAAAGA+GGG - tig0023138:6962-6981 None:intergenic 10.0%
!! TTTATTATTAAATACAAAAG+AGG - tig0023138:6963-6982 None:intergenic 10.0%
!!! TAATTTTCTGAAATTATTTA+TGG + tig0023138:8455-8474 Msa1405400:intron 10.0%
!!! TGAGAAAACTTATTTTTTAA+GGG + tig0023138:3940-3959 Msa1405400:intron 15.0%
!! AAAACAAATTGATCATAAAT+TGG + tig0023138:4164-4183 Msa1405400:intron 15.0%
!! TTTCTACATTTATAAATTGA+AGG - tig0023138:4642-4661 None:intergenic 15.0%
!! GATTGTATGTTAAATTAAAA+GGG - tig0023138:5007-5026 None:intergenic 15.0%
!! TGATTGTATGTTAAATTAAA+AGG - tig0023138:5008-5027 None:intergenic 15.0%
!!! CAATAATTATAATGAGTTTT+TGG - tig0023138:5035-5054 None:intergenic 15.0%
!! AAATAATTCATAATTGCAAA+TGG - tig0023138:5491-5510 None:intergenic 15.0%
!!! ATGAATTATTTTGATGAAAA+TGG + tig0023138:5500-5519 Msa1405400:intron 15.0%
!!! TTTTTATAAAAAGAATCAGA+GGG - tig0023138:6275-6294 None:intergenic 15.0%
!!! TTTTTTATAAAAAGAATCAG+AGG - tig0023138:6276-6295 None:intergenic 15.0%
!! CATCAAATACATTTAAAAAT+TGG - tig0023138:6342-6361 None:intergenic 15.0%
!!! GTGTTTTGTTTATTATAAAA+AGG + tig0023138:6464-6483 Msa1405400:intron 15.0%
!! TTGTTTATTATAAAAAGGAT+CGG + tig0023138:6469-6488 Msa1405400:intron 15.0%
!! TATAAAGAAAAATACATCAA+AGG + tig0023138:7145-7164 Msa1405400:intron 15.0%
!!! AAAAGATTGATAATACTAAT+AGG + tig0023138:7522-7541 Msa1405400:intron 15.0%
!!! AAAGATTGATAATACTAATA+GGG + tig0023138:7523-7542 Msa1405400:intron 15.0%
!! CATTAATTATATTATTGTTC+AGG + tig0023138:7553-7572 Msa1405400:intron 15.0%
!!! ATAAACTTTCATTTTTCAAT+TGG + tig0023138:7977-7996 Msa1405400:CDS 15.0%
!! AATATCAATTATGATATTCT+TGG + tig0023138:8110-8129 Msa1405400:CDS 15.0%
!! ATATATAGATATAACAACTT+TGG - tig0023138:9799-9818 None:intergenic 15.0%
!! ATTCAAAAACAATAACAATA+TGG - tig0023138:9839-9858 None:intergenic 15.0%
!!! TTGTAAAATATTTTGCTCTT+AGG - tig0023138:3378-3397 None:intergenic 20.0%
!! TAAATCCTAACAAAAAGATA+TGG - tig0023138:3618-3637 None:intergenic 20.0%
!! TAGCTAATAATAACAATTCA+TGG - tig0023138:3665-3684 None:intergenic 20.0%
!!! TATAGAACTTTAGAGTAAAA+AGG + tig0023138:3741-3760 Msa1405400:intron 20.0%
!!! ATAGAACTTTAGAGTAAAAA+GGG + tig0023138:3742-3761 Msa1405400:intron 20.0%
!! TTATTCTGTAAAAGATTGAA+GGG + tig0023138:3765-3784 Msa1405400:intron 20.0%
!!! GTGAGAAAACTTATTTTTTA+AGG + tig0023138:3939-3958 Msa1405400:intron 20.0%
!!! TATAGTTGTAGATAACTTTT+TGG + tig0023138:3971-3990 Msa1405400:intron 20.0%
!!! AAGAAGAAAAGTATTATAGA+AGG + tig0023138:4009-4028 Msa1405400:intron 20.0%
!! AAATTGGTCATATCATAAAT+TGG + tig0023138:4180-4199 Msa1405400:intron 20.0%
!! AACACATATCAAAACAAAAA+TGG + tig0023138:4269-4288 Msa1405400:intron 20.0%
!! TCTTATAAGAAAATTGTGAT+TGG - tig0023138:4576-4595 None:intergenic 20.0%
!! TCTGAGTATAATAAATCAAA+TGG + tig0023138:5320-5339 Msa1405400:intron 20.0%
!! TTAATTGCACGTAATATATA+TGG - tig0023138:5551-5570 None:intergenic 20.0%
!!! ATAAGAGATCTTTTAAATTG+TGG - tig0023138:5583-5602 None:intergenic 20.0%
!!! AAAAGTGTATTATTAGTAAC+CGG - tig0023138:5891-5910 None:intergenic 20.0%
!! ATGCTCAATTAATGTATTAT+TGG - tig0023138:5934-5953 None:intergenic 20.0%
!! TTGAATGATCTCTATATATT+TGG + tig0023138:6048-6067 Msa1405400:intron 20.0%
!! TACCAACTGAAATATATTTA+CGG - tig0023138:6147-6166 None:intergenic 20.0%
!! ATATTCTCTCACAATAAATA+AGG - tig0023138:6382-6401 None:intergenic 20.0%
!!! TTTTTTTCATCTTTTCTACA+TGG + tig0023138:6734-6753 Msa1405400:intron 20.0%
!!! AATGATTTTTGTCTTCTTTT+CGG + tig0023138:6861-6880 Msa1405400:intron 20.0%
!!! TTTTTCAAAGTATTAAGAAC+TGG + tig0023138:7104-7123 Msa1405400:intron 20.0%
!! TAATAATTCAGTGTAATGAT+AGG - tig0023138:7700-7719 None:intergenic 20.0%
!!! ATTTTGTTACATCTAATTCA+TGG - tig0023138:7816-7835 None:intergenic 20.0%
!!! GTTTATGTGATTTTTCTTTA+GGG - tig0023138:7963-7982 None:intergenic 20.0%
!!! AGTTTATGTGATTTTTCTTT+AGG - tig0023138:7964-7983 None:intergenic 20.0%
!! TTTATATCCAAGATAATGTA+GGG + tig0023138:8049-8068 Msa1405400:CDS 20.0%
!!! TTTCGCTATAATTTTTTAAG+GGG - tig0023138:8760-8779 None:intergenic 20.0%
!!! CTTTCGCTATAATTTTTTAA+GGG - tig0023138:8761-8780 None:intergenic 20.0%
!!! ACTTTCGCTATAATTTTTTA+AGG - tig0023138:8762-8781 None:intergenic 20.0%
!!! TGTTTTATTTTCTTAACACA+TGG - tig0023138:8839-8858 None:intergenic 20.0%
!! ATGCAATAACTTATTCTATA+AGG - tig0023138:9743-9762 None:intergenic 20.0%
!! ATAAGTTATTGCATCTATAT+AGG + tig0023138:9749-9768 Msa1405400:exon 20.0%
!!! ATTTTTAGAATTCACATAGT+AGG + tig0023138:9857-9876 Msa1405400:three_prime_UTR 20.0%
!! AGAATATCAAGGAAATTATA+TGG + tig0023138:9995-10014 Msa1405400:three_prime_UTR 20.0%
! ATTATCAATAGAATGCATGT+GGG - tig0023138:3329-3348 None:intergenic 25.0%
!!! AATAGTATTTTGACAAAGAG+AGG + tig0023138:3396-3415 Msa1405400:five_prime_UTR 25.0%
!! AATCTCCATATCTTTTTGTT+AGG + tig0023138:3610-3629 Msa1405400:intron 25.0%
! GTTATTCTGTAAAAGATTGA+AGG + tig0023138:3764-3783 Msa1405400:intron 25.0%
! ATACTTCAACATGTATTCAT+TGG + tig0023138:3800-3819 Msa1405400:intron 25.0%
!!! ACTAATTCTGAAATTCAAAG+AGG + tig0023138:3827-3846 Msa1405400:intron 25.0%
!!! CTAATTCTGAAATTCAAAGA+GGG + tig0023138:3828-3847 Msa1405400:intron 25.0%
!!! GACTGTTTTTTTTTAAGGAA+AGG - tig0023138:4077-4096 None:intergenic 25.0%
!!! TGGAAGACTGTTTTTTTTTA+AGG - tig0023138:4082-4101 None:intergenic 25.0%
! GATAGAAAATAAAATGTGCA+GGG - tig0023138:4105-4124 None:intergenic 25.0%
! TGATAGAAAATAAAATGTGC+AGG - tig0023138:4106-4125 None:intergenic 25.0%
! TTCTATCATATTTGATCCAA+TGG + tig0023138:4118-4137 Msa1405400:intron 25.0%
! AGAAAAGAAAATCTTACCAT+TGG - tig0023138:4137-4156 None:intergenic 25.0%
!! GGTAAGATTTTCTTTTCTAA+TGG + tig0023138:4139-4158 Msa1405400:intron 25.0%
!! ACATCTTTATGACCATTTTA+TGG - tig0023138:4243-4262 None:intergenic 25.0%
!!! TAAACTTATTTTGTTGCGTT+TGG - tig0023138:4341-4360 None:intergenic 25.0%
!!! ATTGAGCATTGAAATGTTTT+TGG + tig0023138:4669-4688 Msa1405400:intron 25.0%
!! GTATGAAGTATTTGAAAGAA+TGG + tig0023138:4710-4729 Msa1405400:CDS 25.0%
! TTTGAAAGAATGGCATATTA+TGG + tig0023138:4720-4739 Msa1405400:CDS 25.0%
!! TAATTTTAAATACACCCCAT+GGG + tig0023138:5193-5212 Msa1405400:intron 25.0%
! TTTATTATACTCAGAACCTA+GGG - tig0023138:5315-5334 None:intergenic 25.0%
! ATTTATTATACTCAGAACCT+AGG - tig0023138:5316-5335 None:intergenic 25.0%
!!! ATTTGAAATCCACAGATTTT+TGG + tig0023138:5377-5396 Msa1405400:intron 25.0%
! TATAAAGTTCAATTCTCCTA+AGG + tig0023138:5650-5669 Msa1405400:intron 25.0%
!!! GAAAGTTTTGTATGCAATTA+CGG + tig0023138:5672-5691 Msa1405400:intron 25.0%
! GCTTCAAAGATTAATCTATA+CGG + tig0023138:5704-5723 Msa1405400:intron 25.0%
! TAAAGTCAGTGTTCTAATAT+GGG + tig0023138:6183-6202 Msa1405400:intron 25.0%
!!! ATTTACACTTTAAGATGAAC+AGG - tig0023138:6217-6236 None:intergenic 25.0%
! AGAGTGATATGTTTGATATT+TGG + tig0023138:6532-6551 Msa1405400:intron 25.0%
! AAAAATCACCAAATATCACA+TGG - tig0023138:6719-6738 None:intergenic 25.0%
! TGCTCTAATAACATTGTTAA+AGG - tig0023138:6814-6833 None:intergenic 25.0%
!!! TTCTTAGTTTTCTTTCTCTT+TGG + tig0023138:6930-6949 Msa1405400:intron 25.0%
!!! TCTTAGTTTTCTTTCTCTTT+GGG + tig0023138:6931-6950 Msa1405400:intron 25.0%
!! CATACATAAGCATTTTCTTT+TGG - tig0023138:7062-7081 None:intergenic 25.0%
! AAAAATACATCAAAGGTAGT+AGG + tig0023138:7152-7171 Msa1405400:intron 25.0%
! TCATATTAAAGATTCGATAG+TGG + tig0023138:7224-7243 Msa1405400:intron 25.0%
!! TGAATGTTAAGAACTTTTAG+TGG - tig0023138:7333-7352 None:intergenic 25.0%
! TAACATTCAATCTCAAGATA+AGG + tig0023138:7344-7363 Msa1405400:intron 25.0%
! TTTAATTGCTTGATCTGTAT+TGG + tig0023138:7725-7744 Msa1405400:intron 25.0%
!! TTACAATTAGCTGTGTTTTA+TGG + tig0023138:7853-7872 Msa1405400:CDS 25.0%
!!! AACTTTCATTTTTCAATTGG+TGG + tig0023138:7980-7999 Msa1405400:CDS 25.0%
! TAGAACAGTATTAGCAAAAA+GGG - tig0023138:8028-8047 None:intergenic 25.0%
! GTTTATATCCAAGATAATGT+AGG + tig0023138:8048-8067 Msa1405400:CDS 25.0%
! TATAGTTCTTTAGTATCATC+AGG - tig0023138:8237-8256 None:intergenic 25.0%
! AGAACTATATGAACTTGATA+TGG + tig0023138:8248-8267 Msa1405400:CDS 25.0%
! AAATGTATATACCTCAATGT+TGG - tig0023138:8321-8340 None:intergenic 25.0%
! GTGTTAAAGTTAATTAAGCT+AGG - tig0023138:8352-8371 None:intergenic 25.0%
! GCTTAATTAACTTTAACACA+CGG + tig0023138:8353-8372 Msa1405400:intron 25.0%
!!! TGTAGTTTTACTTAAAGAAC+TGG + tig0023138:8542-8561 Msa1405400:intron 25.0%
! AGTGATTGATTATGTTCAAT+AGG + tig0023138:8617-8636 Msa1405400:intron 25.0%
! AACTTCATTAACCACAAATT+TGG + tig0023138:8686-8705 Msa1405400:intron 25.0%
! AGCAAAATGAAAATACTCAA+AGG - tig0023138:9333-9352 None:intergenic 25.0%
! TCATATTCTTCAACTACATT+AGG + tig0023138:9456-9475 Msa1405400:CDS 25.0%
!! TTACAAGGCTTTATGTATAT+AGG + tig0023138:9646-9665 Msa1405400:CDS 25.0%
!! TACAAGGCTTTATGTATATA+GGG + tig0023138:9647-9666 Msa1405400:CDS 25.0%
! TGAATAAAATGAGCTCAAAA+GGG - tig0023138:9937-9956 None:intergenic 25.0%
! ATGAATAAAATGAGCTCAAA+AGG - tig0023138:9938-9957 None:intergenic 25.0%
!! TTTTTGCAAGAAGAATATCA+AGG + tig0023138:9984-10003 Msa1405400:three_prime_UTR 25.0%
TTATCAATAGAATGCATGTG+GGG - tig0023138:3328-3347 None:intergenic 30.0%
GATTATCAATAGAATGCATG+TGG - tig0023138:3330-3349 None:intergenic 30.0%
GAGAGAGAGATAAATATTTG+TGG + tig0023138:3435-3454 Msa1405400:five_prime_UTR 30.0%
GTTGAGTAAACAAAAGTTGA+AGG + tig0023138:3459-3478 Msa1405400:five_prime_UTR 30.0%
CAAAAGTTGAAGGATAACTA+TGG + tig0023138:3469-3488 Msa1405400:exon 30.0%
CATGGTGTAACAATTATTCA+TGG - tig0023138:3647-3666 None:intergenic 30.0%
! TTTTCCAAACAATTCGTCAT+TGG - tig0023138:4407-4426 None:intergenic 30.0%
ACGAATTGTTTGGAAAAATC+TGG + tig0023138:4410-4429 Msa1405400:intron 30.0%
CGAATTGTTTGGAAAAATCT+GGG + tig0023138:4411-4430 Msa1405400:intron 30.0%
AAGTAACAATGTCACCAATT+GGG + tig0023138:4803-4822 Msa1405400:CDS 30.0%
! TAATATAGGTGTCATCCAAA+TGG - tig0023138:4835-4854 None:intergenic 30.0%
ATTTGGATGACACCTATATT+AGG + tig0023138:4834-4853 Msa1405400:CDS 30.0%
ATTTCTTACCGAGAGATAAA+TGG - tig0023138:4916-4935 None:intergenic 30.0%
! CTCAAACTGAATAAAGTACT+AGG - tig0023138:5062-5081 None:intergenic 30.0%
TTCAGTTTGAGTCTCATAAT+AGG + tig0023138:5071-5090 Msa1405400:intron 30.0%
! GTAATTTTAAATACACCCCA+TGG + tig0023138:5192-5211 Msa1405400:intron 30.0%
TTGCATACAAAACTTTCCTT+AGG - tig0023138:5669-5688 None:intergenic 30.0%
AAATGAATTAGCAAGCAAGT+TGG + tig0023138:5751-5770 Msa1405400:intron 30.0%
! CTATGCTATAGTCAACATTT+TGG + tig0023138:5792-5811 Msa1405400:intron 30.0%
AAGGATAAGTTTCAAATGAC+TGG - tig0023138:6013-6032 None:intergenic 30.0%
TCAATGATACTACAAAGTCA+AGG - tig0023138:6032-6051 None:intergenic 30.0%
CTCCGTAAATATATTTCAGT+TGG + tig0023138:6142-6161 Msa1405400:intron 30.0%
GTAAAGTCAGTGTTCTAATA+TGG + tig0023138:6182-6201 Msa1405400:intron 30.0%
TCGGAGAGAATAACAAATTT+AGG + tig0023138:6488-6507 Msa1405400:intron 30.0%
CGGAGAGAATAACAAATTTA+GGG + tig0023138:6489-6508 Msa1405400:intron 30.0%
AAATATCACGTGTCAAACAA+GGG - tig0023138:6581-6600 None:intergenic 30.0%
TGCTATAAGAACATTGTCAA+AGG - tig0023138:6682-6701 None:intergenic 30.0%
TTTATACAACACTGTCACAT+GGG - tig0023138:7131-7150 None:intergenic 30.0%
AAGAATCTTATAGCTAACAC+TGG + tig0023138:7442-7461 Msa1405400:intron 30.0%
ATAGTTAAACCAGTTATAGC+AGG - tig0023138:7590-7609 None:intergenic 30.0%
TAGGGTGAAAATCATCAAAT+TGG - tig0023138:7945-7964 None:intergenic 30.0%
CTAGAACAGTATTAGCAAAA+AGG - tig0023138:8029-8048 None:intergenic 30.0%
TCAATTATGATATTCTTGGC+AGG + tig0023138:8114-8133 Msa1405400:CDS 30.0%
GGCAATTTGTGTCTATAAAA+GGG - tig0023138:8144-8163 None:intergenic 30.0%
AGGCAATTTGTGTCTATAAA+AGG - tig0023138:8145-8164 None:intergenic 30.0%
! TACTTTCCATTTTCTCAAAG+AGG - tig0023138:8208-8227 None:intergenic 30.0%
! GAAATTATTTATGGTGTCGA+CGG + tig0023138:8464-8483 Msa1405400:intron 30.0%
TAAGTACTAACACAAAACAC+CGG - tig0023138:8506-8525 None:intergenic 30.0%
AATCCCTTAAAAAGTTGTTG+CGG - tig0023138:8582-8601 None:intergenic 30.0%
GATTGATTATGTTCAATAGG+TGG + tig0023138:8620-8639 Msa1405400:intron 30.0%
! ATTATTTAGGTTCCTAGACA+AGG + tig0023138:8870-8889 Msa1405400:intron 30.0%
AAGAGACAAAACAAATGCTA+AGG + tig0023138:8950-8969 Msa1405400:CDS 30.0%
TACATTTGTTCCAAGTACAA+TGG + tig0023138:8993-9012 Msa1405400:CDS 30.0%
!!! TGTTCCTTGTTTTACAAAGA+GGG - tig0023138:9034-9053 None:intergenic 30.0%
!!! TTGTTCCTTGTTTTACAAAG+AGG - tig0023138:9035-9054 None:intergenic 30.0%
GCATAATCCTTACAAAGAAA+CGG - tig0023138:9152-9171 None:intergenic 30.0%
ATTACCCTTCTTCAAAGAAT+GGG + tig0023138:9198-9217 Msa1405400:CDS 30.0%
TGTTCTCCACACAATTATTA+TGG + tig0023138:9230-9249 Msa1405400:CDS 30.0%
CAACTACCATAATAATTGTG+TGG - tig0023138:9239-9258 None:intergenic 30.0%
! AAGCCTATAATTTTCTGTCA+CGG - tig0023138:9265-9284 None:intergenic 30.0%
AGAAAATTATAGGCTTAGAG+TGG + tig0023138:9269-9288 Msa1405400:CDS 30.0%
CTTCCTCAGTTTATACTTAT+GGG + tig0023138:9351-9370 Msa1405400:CDS 30.0%
! TTTCTTTTCCTTCAGTTCAT+TGG - tig0023138:9703-9722 None:intergenic 30.0%
TTTCTCTTCTTTCCTATCCA+AGG + tig0023138:3350-3369 Msa1405400:five_prime_UTR 35.0%
TTCTCTTCTTTCCTATCCAA+GGG + tig0023138:3351-3370 Msa1405400:five_prime_UTR 35.0%
TTGAAGGATAACTATGGAAG+AGG + tig0023138:3475-3494 Msa1405400:exon 35.0%
TGAAGGATAACTATGGAAGA+GGG + tig0023138:3476-3495 Msa1405400:exon 35.0%
! AAAGCTTGTTCCTTTGTTGT+TGG + tig0023138:3584-3603 Msa1405400:CDS 35.0%
! GGAGATTTTACCAACAACAA+AGG - tig0023138:3597-3616 None:intergenic 35.0%
! AGATTGAAGGGTGATAATGA+TGG + tig0023138:3777-3796 Msa1405400:intron 35.0%
! CTTCTCTCATTTCTCTCTTT+TGG - tig0023138:3871-3890 None:intergenic 35.0%
CAAAAGAGAGAAATGAGAGA+AGG + tig0023138:3869-3888 Msa1405400:intron 35.0%
AGAAAATAAAATGTGCAGGG+TGG - tig0023138:4102-4121 None:intergenic 35.0%
TGACAGGTAATACATCATGT+AGG - tig0023138:4210-4229 None:intergenic 35.0%
CACACTCGTTTACCATAAAA+TGG + tig0023138:4228-4247 Msa1405400:intron 35.0%
TTCACCAATGACGAATTGTT+TGG + tig0023138:4400-4419 Msa1405400:intron 35.0%
TTCCTGAGTGAAACAATTCT+TGG + tig0023138:4439-4458 Msa1405400:intron 35.0%
CAAGTAACAATGTCACCAAT+TGG + tig0023138:4802-4821 Msa1405400:CDS 35.0%
GCAACATAAGCACCTAATAT+AGG - tig0023138:4849-4868 None:intergenic 35.0%
AGTTTGAGTCTCATAATAGG+AGG + tig0023138:5074-5093 Msa1405400:intron 35.0%
ATGTCCACAGATTGCATTTA+AGG + tig0023138:5106-5125 Msa1405400:intron 35.0%
TCAACCTTAAATGCAATCTG+TGG - tig0023138:5113-5132 None:intergenic 35.0%
ATGCAAGAGGATACAAACAT+GGG - tig0023138:5159-5178 None:intergenic 35.0%
CCATCTAACATGTTACATGT+GGG - tig0023138:5252-5271 None:intergenic 35.0%
CCACATGTAACATGTTAGAT+GGG + tig0023138:5250-5269 Msa1405400:intron 35.0%
CAAGATTCAACCAAGATCTT+TGG + tig0023138:5274-5293 Msa1405400:intron 35.0%
AATGTTTGGCCAAAAATCTG+TGG - tig0023138:5389-5408 None:intergenic 35.0%
!!! ACAGATTTTTGGCCAAACAT+TGG + tig0023138:5388-5407 Msa1405400:intron 35.0%
AATTCGAACTTTACGTCGTT+TGG - tig0023138:5613-5632 None:intergenic 35.0%
! TGCTTGCTAATTCATTTGTG+TGG - tig0023138:5748-5767 None:intergenic 35.0%
! GCTATAGTCAACATTTTGGA+TGG + tig0023138:5796-5815 Msa1405400:intron 35.0%
!! ACACTTTAAGATGAACAGGT+GGG - tig0023138:6213-6232 None:intergenic 35.0%
!! TACACTTTAAGATGAACAGG+TGG - tig0023138:6214-6233 None:intergenic 35.0%
CAAATATCACGTGTCAAACA+AGG - tig0023138:6582-6601 None:intergenic 35.0%
CTTGTTTGACACGTGATATT+TGG + tig0023138:6580-6599 Msa1405400:intron 35.0%
AACATGCTCCATGTGATATT+TGG + tig0023138:6708-6727 Msa1405400:intron 35.0%
CTTTATACAACACTGTCACA+TGG - tig0023138:7132-7151 None:intergenic 35.0%
!! TTAAAGATTCGATAGTGGAC+TGG + tig0023138:7229-7248 Msa1405400:intron 35.0%
! AACACTGCAAGACATTTTGT+TGG - tig0023138:7273-7292 None:intergenic 35.0%
TCAATCTCAAGATAAGGACA+TGG + tig0023138:7350-7369 Msa1405400:intron 35.0%
AAAGTCAATCCTGCTATAAC+TGG + tig0023138:7578-7597 Msa1405400:CDS 35.0%
TTCAGTGTAATGATAGGTGT+CGG - tig0023138:7694-7713 None:intergenic 35.0%
ACATCTAATTCATGGCATTG+TGG - tig0023138:7808-7827 None:intergenic 35.0%
CACAGCTAATTGTAATGTAG+AGG - tig0023138:7848-7867 None:intergenic 35.0%
AAACCCAACATATCAACCAT+TGG + tig0023138:7913-7932 Msa1405400:CDS 35.0%
TGGATGTTTAGCATCTTCTT+TGG + tig0023138:8000-8019 Msa1405400:CDS 35.0%
GGATGTTTAGCATCTTCTTT+GGG + tig0023138:8001-8020 Msa1405400:CDS 35.0%
ATATCCAAGATAATGTAGGG+TGG + tig0023138:8052-8071 Msa1405400:CDS 35.0%
GATATTGCTAATCCTAGAGT+TGG - tig0023138:8096-8115 None:intergenic 35.0%
TACTTTCACTAGAATGGCTA+GGG + tig0023138:8173-8192 Msa1405400:CDS 35.0%
! TAGTTGCCTCTTTGAGAAAA+TGG + tig0023138:8199-8218 Msa1405400:CDS 35.0%
TCTTTAGTATCATCAGGAAC+AGG - tig0023138:8231-8250 None:intergenic 35.0%
ATGGTAGAGTATGCTAAGAA+AGG + tig0023138:8267-8286 Msa1405400:CDS 35.0%
TGGTAGAGTATGCTAAGAAA+GGG + tig0023138:8268-8287 Msa1405400:CDS 35.0%
TATATACCTCAATGTTGGAG+TGG - tig0023138:8316-8335 None:intergenic 35.0%
TGTCTAACACATGTCAATGT+TGG + tig0023138:8396-8415 Msa1405400:intron 35.0%
! ACTTCCGCAACAACTTTTTA+AGG + tig0023138:8575-8594 Msa1405400:intron 35.0%
! CTTCCGCAACAACTTTTTAA+GGG + tig0023138:8576-8595 Msa1405400:intron 35.0%
GTTAAACACGTCCAAATTTG+TGG - tig0023138:8700-8719 None:intergenic 35.0%
!!! AATTTTTTAAGGGGTCCATG+TGG - tig0023138:8751-8770 None:intergenic 35.0%
ACAAATGTAGCAACCAAGAT+TGG - tig0023138:8982-9001 None:intergenic 35.0%
ATTTGTTCCAAGTACAATGG+TGG + tig0023138:8996-9015 Msa1405400:CDS 35.0%
AACACCCTCTTTGTAAAACA+AGG + tig0023138:9027-9046 Msa1405400:CDS 35.0%
TCTATGACCGTTTCTTTGTA+AGG + tig0023138:9142-9161 Msa1405400:CDS 35.0%
AGATTAACCAAGAATCCAAG+AGG + tig0023138:9174-9193 Msa1405400:CDS 35.0%
GATTAACCAAGAATCCAAGA+GGG + tig0023138:9175-9194 Msa1405400:CDS 35.0%
GATTACCCTTCTTCAAAGAA+TGG + tig0023138:9197-9216 Msa1405400:CDS 35.0%
TTACCCTTCTTCAAAGAATG+GGG + tig0023138:9199-9218 Msa1405400:CDS 35.0%
! AATCCCCATTCTTTGAAGAA+GGG - tig0023138:9205-9224 None:intergenic 35.0%
CATCCGTGACAGAAAATTAT+AGG + tig0023138:9259-9278 Msa1405400:CDS 35.0%
GAACATGGTTTAGTTGAAAG+TGG + tig0023138:9297-9316 Msa1405400:CDS 35.0%
GCTTCCTCAGTTTATACTTA+TGG + tig0023138:9350-9369 Msa1405400:CDS 35.0%
GTTCCCATAAGTATAAACTG+AGG - tig0023138:9357-9376 None:intergenic 35.0%
!! AACAGCTGATGCATTTTTAG+AGG + tig0023138:9374-9393 Msa1405400:CDS 35.0%
TCTTCAACTACATTAGGCAT+AGG + tig0023138:9462-9481 Msa1405400:CDS 35.0%
GACTATATCGCGTATAACTA+AGG + tig0023138:9512-9531 Msa1405400:CDS 35.0%
ACTAAGGAACATGGTCATAA+AGG + tig0023138:9528-9547 Msa1405400:CDS 35.0%
CTAAGGAACATGGTCATAAA+GGG + tig0023138:9529-9548 Msa1405400:CDS 35.0%
TGTATATAGGGCTGAAGTTT+CGG + tig0023138:9659-9678 Msa1405400:CDS 35.0%
TGAACTGAAGGAAAAGAAAG+CGG + tig0023138:9704-9723 Msa1405400:CDS 35.0%
CTTATTCTATAAGGTTCGCA+TGG - tig0023138:9734-9753 None:intergenic 35.0%
! TATTTTGCTCTTAGGTCCCT+TGG - tig0023138:3370-3389 None:intergenic 40.0%
GATGGAACTGTGAATCTCAA+AGG + tig0023138:3527-3546 Msa1405400:CDS 40.0%
!!! CCAGTTTTGGATCTAAGAAC+AGG - tig0023138:3557-3576 None:intergenic 40.0%
CCTGTTCTTAGATCCAAAAC+TGG + tig0023138:3554-3573 Msa1405400:CDS 40.0%
GTTCTTAGATCCAAAACTGG+TGG + tig0023138:3557-3576 Msa1405400:CDS 40.0%
TTAGATCCAAAACTGGTGGT+TGG + tig0023138:3561-3580 Msa1405400:CDS 40.0%
ATATTGCTCTCCTACAAGTG+TGG + tig0023138:3897-3916 Msa1405400:intron 40.0%
! CTCTCATTTTCCACACTTGT+AGG - tig0023138:3910-3929 None:intergenic 40.0%
TTATGGTAAACGAGTGTGAC+AGG - tig0023138:4226-4245 None:intergenic 40.0%
ACCAAGAAATTGAGCTCAGA+TGG + tig0023138:4368-4387 Msa1405400:intron 40.0%
ACCATCTGAGCTCAATTTCT+TGG - tig0023138:4372-4391 None:intergenic 40.0%
ATGGTAATCCAGAGTGAGTT+CGG - tig0023138:4487-4506 None:intergenic 40.0%
!! TACATAGCGCTGGTTGAAAA+TGG - tig0023138:4512-4531 None:intergenic 40.0%
AACAATGTCACCAATTGGGT+TGG + tig0023138:4807-4826 Msa1405400:CDS 40.0%
ACAATGTCACCAATTGGGTT+GGG + tig0023138:4808-4827 Msa1405400:CDS 40.0%
GAAAAGTCCAAAAACGACCA+AGG - tig0023138:4881-4900 None:intergenic 40.0%
TGCATCCTCCATTTATCTCT+CGG + tig0023138:4905-4924 Msa1405400:CDS 40.0%
TCTTACCGAGAGATAAATGG+AGG - tig0023138:4913-4932 None:intergenic 40.0%
ATACAAACATGGGTAGGATG+AGG - tig0023138:5149-5168 None:intergenic 40.0%
AAGAGGATACAAACATGGGT+AGG - tig0023138:5155-5174 None:intergenic 40.0%
CATGCAAGAGGATACAAACA+TGG - tig0023138:5160-5179 None:intergenic 40.0%
CATGTTTGTATCCTCTTGCA+TGG + tig0023138:5158-5177 Msa1405400:intron 40.0%
TGTATCCTCTTGCATGGTAT+TGG + tig0023138:5164-5183 Msa1405400:intron 40.0%
ATAAGCTGGACAAAGCTATG+GGG - tig0023138:5220-5239 None:intergenic 40.0%
GATAAGCTGGACAAAGCTAT+GGG - tig0023138:5221-5240 None:intergenic 40.0%
AGATAAGCTGGACAAAGCTA+TGG - tig0023138:5222-5241 None:intergenic 40.0%
ACATGTTACATGTGGGAGTT+GGG - tig0023138:5245-5264 None:intergenic 40.0%
AACATGTTACATGTGGGAGT+TGG - tig0023138:5246-5265 None:intergenic 40.0%
CCCACATGTAACATGTTAGA+TGG + tig0023138:5249-5268 Msa1405400:intron 40.0%
CCCATCTAACATGTTACATG+TGG - tig0023138:5253-5272 None:intergenic 40.0%
CAACCAAGATCTTTGGCTAT+TGG + tig0023138:5281-5300 Msa1405400:intron 40.0%
!! TTGGCCAAACATTGGTTCTA+TGG + tig0023138:5396-5415 Msa1405400:intron 40.0%
GTTGCCATAGAACCAATGTT+TGG - tig0023138:5403-5422 None:intergenic 40.0%
TACTAGGCTGCTTGCATAAT+TGG - tig0023138:5844-5863 None:intergenic 40.0%
AATTATGCAAGCAGCCTAGT+AGG + tig0023138:5843-5862 Msa1405400:intron 40.0%
!! TGCTGTTGACTTATCCTACT+AGG - tig0023138:5860-5879 None:intergenic 40.0%
GAATCAAACTCACTGTGACT+AGG - tig0023138:7185-7204 None:intergenic 40.0%
! TTGCAGCATGCTCAATGTTT+TGG + tig0023138:7484-7503 Msa1405400:intron 40.0%
ATGATCTCACAGACACTTCT+CGG + tig0023138:7627-7646 Msa1405400:CDS 40.0%
TGATCTGTATTGGAACATGC+AGG + tig0023138:7735-7754 Msa1405400:intron 40.0%
GATCTGTATTGGAACATGCA+GGG + tig0023138:7736-7755 Msa1405400:intron 40.0%
TCTAATTCATGGCATTGTGG+TGG - tig0023138:7805-7824 None:intergenic 40.0%
GCACTTTACACTCTAGCAAT+AGG + tig0023138:7877-7896 Msa1405400:CDS 40.0%
TACACTCTAGCAATAGGAAC+AGG + tig0023138:7883-7902 Msa1405400:CDS 40.0%
! GCACCAATGGTTGATATGTT+GGG - tig0023138:7919-7938 None:intergenic 40.0%
! AGCACCAATGGTTGATATGT+TGG - tig0023138:7920-7939 None:intergenic 40.0%
ATCAAATTGGTCAGCACCAA+TGG - tig0023138:7932-7951 None:intergenic 40.0%
GGATATGCTTTACCAACTCT+AGG + tig0023138:8081-8100 Msa1405400:CDS 40.0%
TATAGACACAAATTGCCTGC+AGG + tig0023138:8147-8166 Msa1405400:CDS 40.0%
ATAGACACAAATTGCCTGCA+GGG + tig0023138:8148-8167 Msa1405400:CDS 40.0%
!! AGGGAGTACTTTCACTAGAA+TGG + tig0023138:8167-8186 Msa1405400:CDS 40.0%
GTACTTTCACTAGAATGGCT+AGG + tig0023138:8172-8191 Msa1405400:CDS 40.0%
TTGATTCCACTCCAACATTG+AGG + tig0023138:8307-8326 Msa1405400:CDS 40.0%
CGTTCAAATCTACAACCACA+TGG + tig0023138:8733-8752 Msa1405400:intron 40.0%
! TTTTGACACTTGCCTTGTCT+AGG - tig0023138:8885-8904 None:intergenic 40.0%
GTAACTGTGCATAACATCCA+TGG - tig0023138:8922-8941 None:intergenic 40.0%
GCTAAGGATGATTCCAATCT+TGG + tig0023138:8966-8985 Msa1405400:CDS 40.0%
ACAACACTTGACAGACACAT+TGG + tig0023138:9051-9070 Msa1405400:CDS 40.0%
ACAAATGCAGCTAAACTTGC+TGG - tig0023138:9093-9112 None:intergenic 40.0%
! CAATCCCCATTCTTTGAAGA+AGG - tig0023138:9206-9225 None:intergenic 40.0%
CTTCTTCAAAGAATGGGGAT+TGG + tig0023138:9204-9223 Msa1405400:CDS 40.0%
CTTAGAGTGGCAAAAGAACA+TGG + tig0023138:9282-9301 Msa1405400:CDS 40.0%
CATGGTTTAGTTGAAAGTGG+AGG + tig0023138:9300-9319 Msa1405400:CDS 40.0%
CCAATACTCTTCATGCTTTC+TGG - tig0023138:9432-9451 None:intergenic 40.0%
! CCAGAAAGCATGAAGAGTAT+TGG + tig0023138:9429-9448 Msa1405400:CDS 40.0%
TACGCGATATAGTCGACAAA+AGG - tig0023138:9506-9525 None:intergenic 40.0%
TCGCGTATAACTAAGGAACA+TGG + tig0023138:9519-9538 Msa1405400:CDS 40.0%
! AAGGAGGAGTACACAGAAGA+TGG + tig0023138:3509-3528 Msa1405400:CDS 45.0%
! AGCTTTCCAACCACCAGTTT+TGG - tig0023138:3570-3589 None:intergenic 45.0%
GGCCAAGAATTGTTTCACTC+AGG - tig0023138:4444-4463 None:intergenic 45.0%
TCAACCAGCGCTATGTAGAA+AGG + tig0023138:4515-4534 Msa1405400:intron 45.0%
TAGACCTTTCTACATAGCGC+TGG - tig0023138:4522-4541 None:intergenic 45.0%
GAAGCTTCTTTGTGAGGAAG+AGG - tig0023138:4764-4783 None:intergenic 45.0%
CTTGGTGAAGCTTCTTTGTG+AGG - tig0023138:4770-4789 None:intergenic 45.0%
CTCACAAAGAAGCTTCACCA+AGG + tig0023138:4768-4787 Msa1405400:CDS 45.0%
TACTTGCAGTCACTGTTCCT+TGG - tig0023138:4788-4807 None:intergenic 45.0%
TATGTTGCTGATGCTCACCT+TGG + tig0023138:4861-4880 Msa1405400:CDS 45.0%
!! ATGCTCACCTTGGTCGTTTT+TGG + tig0023138:4871-4890 Msa1405400:CDS 45.0%
! ATCCTCTTGCATGGTATTGG+CGG + tig0023138:5167-5186 Msa1405400:intron 45.0%
GTGCCAATAGCCAAAGATCT+TGG - tig0023138:5287-5306 None:intergenic 45.0%
TGTTGGACCTTAAGAACCCT+TGG - tig0023138:7256-7275 None:intergenic 45.0%
TCACAGACACTTCTCGGATT+AGG + tig0023138:7633-7652 Msa1405400:CDS 45.0%
!! GTAATGATAGGTGTCGGTGT+CGG - tig0023138:7688-7707 None:intergenic 45.0%
ACTCTAGCAATAGGAACAGG+TGG + tig0023138:7886-7905 Msa1405400:CDS 45.0%
GAGTCCACCCTACATTATCT+TGG - tig0023138:8059-8078 None:intergenic 45.0%
! GATAATGTAGGGTGGACTCT+TGG + tig0023138:8060-8079 Msa1405400:CDS 45.0%
!! CGGCATTTTAGTGTAGTGTC+CGG + tig0023138:8484-8503 Msa1405400:intron 45.0%
GACAAGGCAAGTGTCAAAAC+AGG + tig0023138:8886-8905 Msa1405400:CDS 45.0%
AAACAGGCACAACTAGTCCA+TGG + tig0023138:8902-8921 Msa1405400:CDS 45.0%
ACTTGAGCCACCATTGTACT+TGG - tig0023138:9006-9025 None:intergenic 45.0%
!! AATGCAGCTAAACTTGCTGG+TGG - tig0023138:9090-9109 None:intergenic 45.0%
GAGCACTACACAAACAAGCA+AGG - tig0023138:9124-9143 None:intergenic 45.0%
GGTAATCCCTCTTGGATTCT+TGG - tig0023138:9184-9203 None:intergenic 45.0%
TGAAGAAGGGTAATCCCTCT+TGG - tig0023138:9192-9211 None:intergenic 45.0%
AGGAACATGGTCATAAAGGG+TGG + tig0023138:9532-9551 Msa1405400:CDS 45.0%
TCTTCTTCGCGATCGTTACA+AGG + tig0023138:9631-9650 Msa1405400:CDS 45.0%
CATGCTTGCCAATGAACTGA+AGG + tig0023138:9692-9711 Msa1405400:CDS 45.0%
!! AATATTAAAAGTAATTAAAT+TGG + tig0023138:6397-6416 Msa1405400:intron 5.0%
!! CATATATTAATTTATTATTT+AGG + tig0023138:8857-8876 Msa1405400:intron 5.0%
TGCTCTTAGGTCCCTTGGAT+AGG - tig0023138:3365-3384 None:intergenic 50.0%
GTCGTGAGATAAGGACAGTC+TGG - tig0023138:4465-4484 None:intergenic 50.0%
GTGAGTTCGGTCGTGAGATA+AGG - tig0023138:4474-4493 None:intergenic 50.0%
!! GCGCTGGTTGAAAATGGTCA+TGG - tig0023138:4506-4525 None:intergenic 50.0%
CCAAATGGTCCCAACCCAAT+TGG - tig0023138:4820-4839 None:intergenic 50.0%
!! CCAATTGGGTTGGGACCATT+TGG + tig0023138:4817-4836 Msa1405400:CDS 50.0%
!! TCCTCTTGCATGGTATTGGC+GGG + tig0023138:5168-5187 Msa1405400:intron 50.0%
ACAAAGCTATGGGGTCCCAT+GGG - tig0023138:5211-5230 None:intergenic 50.0%
GCTATTGGCACATGTTCCCT+AGG + tig0023138:5296-5315 Msa1405400:intron 50.0%
AGTCAACAGCAGCTATCGAC+CGG + tig0023138:5869-5888 Msa1405400:intron 50.0%
!! TTCGATAGTGGACTGGACCA+AGG + tig0023138:7236-7255 Msa1405400:intron 50.0%
!! TCGATAGTGGACTGGACCAA+GGG + tig0023138:7237-7256 Msa1405400:intron 50.0%
GACTGGACCAAGGGTTCTTA+AGG + tig0023138:7246-7265 Msa1405400:intron 50.0%
ATAAGGACATGGTGCTCCTG+TGG + tig0023138:7361-7380 Msa1405400:intron 50.0%
TAAGGACATGGTGCTCCTGT+GGG + tig0023138:7362-7381 Msa1405400:intron 50.0%
! TTCTCGGATTAGGCGTGTTC+TGG + tig0023138:7643-7662 Msa1405400:CDS 50.0%
GATTAGGCGTGTTCTGGTGT+CGG + tig0023138:7649-7668 Msa1405400:intron 50.0%
CATTGTGGTGGCTTCAAGGT+AGG - tig0023138:7793-7812 None:intergenic 50.0%
ATGGCATTGTGGTGGCTTCA+AGG - tig0023138:7797-7816 None:intergenic 50.0%
!! CTAGTGAAAGTACTCCCTGC+AGG - tig0023138:8165-8184 None:intergenic 50.0%
GGAAGAGGGCAGAGTAGTGA+AGG + tig0023138:3490-3509 Msa1405400:CDS 55.0%
AGAGGGCAGAGTAGTGAAGG+AGG + tig0023138:3493-3512 Msa1405400:CDS 55.0%
TCTCACGACCGAACTCACTC+TGG + tig0023138:4476-4495 Msa1405400:intron 55.0%
TCCCGCCAATACCATGCAAG+AGG - tig0023138:5172-5191 None:intergenic 55.0%
CAAAGCTATGGGGTCCCATG+GGG - tig0023138:5210-5229 None:intergenic 55.0%
GACAAAGCTATGGGGTCCCA+TGG - tig0023138:5212-5231 None:intergenic 55.0%
GTGGGAGTTGGGAGATAAGC+TGG - tig0023138:5234-5253 None:intergenic 55.0%
AAGGACATGGTGCTCCTGTG+GGG + tig0023138:7363-7382 Msa1405400:intron 55.0%
!! TCCTGTGGGGCTAGTGGGTT+GGG + tig0023138:7376-7395 Msa1405400:intron 60.0%
TGGTGCTCCTGTGGGGCTAG+TGG + tig0023138:7370-7389 Msa1405400:intron 65.0%
! GGTGCTCCTGTGGGGCTAGT+GGG + tig0023138:7371-7390 Msa1405400:intron 65.0%
! CTCCTGTGGGGCTAGTGGGT+TGG + tig0023138:7375-7394 Msa1405400:intron 65.0%
TCCCAACCCACTAGCCCCAC+AGG - tig0023138:7380-7399 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023138 gene 3303 10042 3303 ID=Msa1405400;Name=Msa1405400
tig0023138 mRNA 3303 10042 3303 ID=Msa1405400-mRNA-1;Parent=Msa1405400;Name=Msa1405400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=185|0.5|0.8|1|1|1|5|290|623
tig0023138 exon 3303 3605 3303 ID=Msa1405400-mRNA-1:exon:24101;Parent=Msa1405400-mRNA-1
tig0023138 exon 4709 4926 4709 ID=Msa1405400-mRNA-1:exon:24102;Parent=Msa1405400-mRNA-1
tig0023138 exon 7575 7664 7575 ID=Msa1405400-mRNA-1:exon:24103;Parent=Msa1405400-mRNA-1
tig0023138 exon 7757 8328 7757 ID=Msa1405400-mRNA-1:exon:24104;Parent=Msa1405400-mRNA-1
tig0023138 exon 8879 10042 8879 ID=Msa1405400-mRNA-1:exon:24105;Parent=Msa1405400-mRNA-1
tig0023138 five_prime_UTR 3303 3487 3303 ID=Msa1405400-mRNA-1:five_prime_utr;Parent=Msa1405400-mRNA-1
tig0023138 CDS 3488 3605 3488 ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138 CDS 4709 4926 4709 ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138 CDS 7575 7664 7575 ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138 CDS 7757 8328 7757 ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138 CDS 8879 9752 8879 ID=Msa1405400-mRNA-1:cds;Parent=Msa1405400-mRNA-1
tig0023138 three_prime_UTR 9753 10042 9753 ID=Msa1405400-mRNA-1:three_prime_utr;Parent=Msa1405400-mRNA-1
Gene Sequence

>Msa1405400

ATGGAAGAGGGCAGAGTAGTGAAGGAGGAGTACACAGAAGATGGAACTGTGAATCTCAAAGGAAAACCTGTTCTTAGATCCAAAACTGGTGGTTGGAAAGCTTGTTCCTTTGTTGTTGTGTATGAAGTATTTGAAAGAATGGCATATTATGGAATATCATCGAATTTGATCCTCTTCCTCACAAAGAAGCTTCACCAAGGAACAGTGACTGCAAGTAACAATGTCACCAATTGGGTTGGGACCATTTGGATGACACCTATATTAGGTGCTTATGTTGCTGATGCTCACCTTGGTCGTTTTTGGACTTTTCTCATTGCATCCTCCATTTATCTCTCGGTCAAAGTCAATCCTGCTATAACTGGTTTAACTATTATGTCATCAATTTTTAATGATCTCACAGACACTTCTCGGATTAGGCGTGTTCTGGGTATGTCTCTGCTTACACTAGCAGTGTCACTTCCTACCTTGAAGCCACCACAATGCCATGAATTAGATGTAACAAAATGCAAAAAAGCCTCTACATTACAATTAGCTGTGTTTTATGGTGCACTTTACACTCTAGCAATAGGAACAGGTGGAACAAAACCCAACATATCAACCATTGGTGCTGACCAATTTGATGATTTTCACCCTAAAGAAAAATCACATAAACTTTCATTTTTCAATTGGTGGATGTTTAGCATCTTCTTTGGGACCCTTTTTGCTAATACTGTTCTAGTTTATATCCAAGATAATGTAGGGTGGACTCTTGGATATGCTTTACCAACTCTAGGATTAGCAATATCAATTATGATATTCTTGGCAGGAACACCCTTTTATAGACACAAATTGCCTGCAGGGAGTACTTTCACTAGAATGGCTAGGGTTATAGTTGCCTCTTTGAGAAAATGGAAAGTACCTGTTCCTGATGATACTAAAGAACTATATGAACTTGATATGGTAGAGTATGCTAAGAAAGGGAGTAACACTTACAGAATTGATTCCACTCCAACATTGAGGTTCCTAGACAAGGCAAGTGTCAAAACAGGCACAACTAGTCCATGGATGTTATGCACAGTTACACATGTAGAAGAGACAAAACAAATGCTAAGGATGATTCCAATCTTGGTTGCTACATTTGTTCCAAGTACAATGGTGGCTCAAGTAAACACCCTCTTTGTAAAACAAGGAACAACACTTGACAGACACATTGGAAGCTTCAAAATTCCACCAGCAAGTTTAGCTGCATTTGTCACATTGTCCTTGCTTGTTTGTGTAGTGCTCTATGACCGTTTCTTTGTAAGGATTATGCAGAGATTAACCAAGAATCCAAGAGGGATTACCCTTCTTCAAAGAATGGGGATTGGTCTTGTTCTCCACACAATTATTATGGTAGTTGCATCCGTGACAGAAAATTATAGGCTTAGAGTGGCAAAAGAACATGGTTTAGTTGAAAGTGGAGGACAAGTTCCTTTGAGTATTTTCATTTTGCTTCCTCAGTTTATACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCGAAAATCGAGTTTTTCTATGATCAAGCTCCAGAAAGCATGAAGAGTATTGGAACTTCATATTCTTCAACTACATTAGGCATAGGAAATTTCATCAGTTCATTCCTTTTGTCGACTATATCGCGTATAACTAAGGAACATGGTCATAAAGGGTGGATTTTGAACAATCTGAATGATTCTCATCTTGATTACTACTATGCGTTTTTCGCAGTGTTGAACTTCTTGAACTTAATCTTCTTCGCGATCGTTACAAGGCTTTATGTATATAGGGCTGAAGTTTCGGATTCTATAGACATGCTTGCCAATGAACTGAAGGAAAAGAAAGCGGTTAACCATGCGAACCTTATAGAATAA
Protein sequence

>Msa1405400

MEEGRVVKEEYTEDGTVNLKGKPVLRSKTGGWKACSFVVVYEVFERMAYYGISSNLILFLTKKLHQGTVTASNNVTNWVGTIWMTPILGAYVADAHLGRFWTFLIASSIYLSVKVNPAITGLTIMSSIFNDLTDTSRIRRVLGMSLLTLAVSLPTLKPPQCHELDVTKCKKASTLQLAVFYGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAISIMIFLAGTPFYRHKLPAGSTFTRMARVIVASLRKWKVPVPDDTKELYELDMVEYAKKGSNTYRIDSTPTLRFLDKASVKTGTTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMVAQVNTLFVKQGTTLDRHIGSFKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGITLLQRMGIGLVLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYSSTTLGIGNFISSFLLSTISRITKEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLIFFAIVTRLYVYRAEVSDSIDMLANELKEKKAVNHANLIE*