AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0411000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411000 MtrunA17_Chr3g0102091 94.402 393 22 0 1 393 1 393 0.0 751
Msa0411000 MtrunA17_Chr4g0055041 51.744 344 161 3 45 384 33 375 4.91e-119 350
Msa0411000 MtrunA17_Chr2g0283381 46.448 366 186 3 12 370 1 363 6.07e-111 330
Msa0411000 MtrunA17_Chr7g0249781 49.848 329 160 2 41 369 23 346 6.85e-100 301
Msa0411000 MtrunA17_Chr6g0483671 77.326 172 32 1 219 390 5 169 1.69e-89 267
Msa0411000 MtrunA17_Chr3g0132551 35.077 325 201 4 51 365 20 344 8.97e-59 195
Msa0411000 MtrunA17_Chr5g0426921 33.735 332 215 3 59 386 32 362 2.02e-53 181
Msa0411000 MtrunA17_Chr3g0132561 30.994 342 191 4 34 365 3 309 1.91e-49 170
Msa0411000 MtrunA17_Chr8g0346091 34.395 314 189 3 62 371 68 368 3.73e-48 167
Msa0411000 MtrunA17_Chr2g0296491 32.320 362 219 9 3 357 31 373 9.85e-40 145
Msa0411000 MtrunA17_Chr2g0296481 33.225 307 184 8 68 367 72 364 9.55e-34 129
Msa0411000 MtrunA17_Chr2g0313931 45.669 127 61 3 45 170 30 149 3.74e-27 106
Msa0411000 MtrunA17_Chr2g0313921 43.284 67 36 1 213 277 2 68 2.28e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411000 AT4G18220.1 55.949 395 163 4 1 391 1 388 2.64e-150 431
Msa0411000 AT4G18210.1 56.443 388 155 4 1 381 1 381 4.13e-146 420
Msa0411000 AT4G18205.1 49.870 385 173 5 5 389 13 377 7.07e-119 350
Msa0411000 AT4G18195.1 51.058 378 180 3 16 393 16 388 3.98e-114 338
Msa0411000 AT4G18197.1 47.949 390 190 4 9 392 1 383 3.28e-112 333
Msa0411000 AT4G18190.1 51.771 367 163 4 12 371 2 361 5.65e-109 325
Msa0411000 AT1G44750.1 48.000 325 163 1 45 369 42 360 1.06e-94 288
Msa0411000 AT1G44750.6 48.000 325 163 1 45 369 30 348 1.30e-94 288
Msa0411000 AT1G44750.2 48.000 325 163 1 45 369 30 348 1.30e-94 288
Msa0411000 AT4G08700.1 41.351 370 195 4 1 369 1 349 4.78e-84 261
Msa0411000 AT1G44750.7 52.632 247 117 0 123 369 38 284 8.08e-84 258
Msa0411000 AT1G44750.5 52.632 247 117 0 123 369 38 284 8.08e-84 258
Msa0411000 AT1G44750.4 52.632 247 117 0 123 369 38 284 8.08e-84 258
Msa0411000 AT1G44750.8 52.632 247 117 0 123 369 38 284 8.08e-84 258
Msa0411000 AT1G44750.3 52.632 247 117 0 123 369 38 284 8.08e-84 258
Msa0411000 AT5G41160.1 40.270 370 202 5 1 369 1 352 1.81e-78 246
Msa0411000 AT1G28220.1 36.562 320 188 6 59 371 16 327 1.53e-64 210
Msa0411000 AT2G33750.2 37.423 326 191 3 59 379 18 335 1.90e-63 207
Msa0411000 AT2G33750.1 36.202 337 191 4 59 379 18 346 4.37e-60 199
Msa0411000 AT1G28230.1 35.692 325 203 3 59 377 16 340 2.88e-59 196
Msa0411000 AT1G19770.1 31.118 331 206 4 59 368 59 388 1.86e-44 159
Msa0411000 AT1G57990.1 30.750 400 238 11 12 382 1 390 1.02e-41 151
Msa0411000 AT1G57980.1 32.808 381 218 10 12 363 1 372 6.71e-41 149
Msa0411000 AT1G57943.1 30.831 373 225 8 15 363 13 376 9.79e-39 143
Msa0411000 AT1G57943.2 30.563 373 225 8 15 363 13 375 1.76e-38 142
Msa0411000 AT1G47603.1 31.008 387 237 10 15 379 13 391 4.07e-38 141
Msa0411000 AT2G24220.2 31.761 318 200 4 45 358 54 358 1.36e-35 134
Msa0411000 AT2G24220.1 31.378 341 212 5 27 358 13 340 2.01e-35 134
Msa0411000 AT1G09860.1 30.704 355 218 8 42 375 25 372 1.49e-33 129
Msa0411000 AT1G75470.1 28.571 392 250 10 1 371 1 383 5.02e-33 127
Msa0411000 AT1G30840.2 30.619 307 203 3 59 363 38 336 4.80e-25 105
Msa0411000 AT1G30840.1 30.619 307 203 3 59 363 38 336 4.80e-25 105

Find 98 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGTATCAACAATATT+TGG 0.161384 3_2:-53091009 Msa0411000:CDS
TTTCATTCACTTTCTAAATA+TGG 0.164512 3_2:-53093549 Msa0411000:exon
CTCCAATGAGAATGTTTCTT+TGG 0.196693 3_2:+53092039 None:intergenic
TAATTGATCCATTCGTTATT+TGG 0.202214 3_2:+53091999 None:intergenic
TTCTATGGTACTAGCTGTTT+GGG 0.219148 3_2:-53091042 Msa0411000:CDS
ATAATGCATTGAAACCTAAT+TGG 0.241997 3_2:+53091612 None:intergenic
CTTATTTGCTCATCCCAATT+AGG 0.250351 3_2:-53091626 Msa0411000:CDS
AAATAATATGGTAGTAGAAT+TGG 0.273685 3_2:+53091821 None:intergenic
ATTTGCTACTTATATTCATT+AGG 0.276797 3_2:-53091680 Msa0411000:CDS
AGCGGGAGCTTCAACCTTAA+TGG 0.277606 3_2:+53090530 None:intergenic
GGAAGATTATACTATGAAAA+AGG 0.278195 3_2:-53091890 Msa0411000:CDS
TTTCTATGGTACTAGCTGTT+TGG 0.287753 3_2:-53091043 Msa0411000:CDS
AGACAAAATGCATGGGATTA+AGG 0.299496 3_2:-53091069 Msa0411000:CDS
GTCAGGAGTGTTTCTTGTTT+CGG 0.307016 3_2:+53090968 None:intergenic
TTTGCTACTTATATTCATTA+GGG 0.310509 3_2:-53091679 Msa0411000:CDS
TAGAGTTGTCGATTCCATTA+AGG 0.313410 3_2:-53090544 Msa0411000:three_prime_UTR
AGAATGTTTCTTTGGCTTCA+TGG 0.313976 3_2:+53092047 None:intergenic
TTCATTCACTTTCTAAATAT+GGG 0.319627 3_2:-53093548 Msa0411000:exon
TGGGATTAAGGCCATTTCTA+TGG 0.331205 3_2:-53091057 Msa0411000:CDS
AACAATGATATTATTATTTG+TGG 0.348869 3_2:+53091772 None:intergenic
GTCTTTAGTATTGGTTGTGT+TGG 0.355728 3_2:-53091182 Msa0411000:CDS
ATTCAATATGTAAGAAGATT+AGG 0.359410 3_2:-53090854 Msa0411000:three_prime_UTR
AGCAAATTAATGCATTAAAT+AGG 0.359798 3_2:+53091696 None:intergenic
GAAATGGAAGATTATGAGTT+GGG 0.360853 3_2:-53091254 Msa0411000:CDS
GATCCATTCGTTATTTGGTT+TGG 0.368911 3_2:+53092004 None:intergenic
TGAACCATATATGTTTGGTT+AGG 0.371443 3_2:-53090797 Msa0411000:three_prime_UTR
GAAGAGGGTGATTGTCGATC+TGG 0.375658 3_2:-53090908 Msa0411000:three_prime_UTR
AATCTTCTTACATATTGAAT+TGG 0.378814 3_2:+53090857 None:intergenic
ATACCCTAACCAAACATATA+TGG 0.379817 3_2:+53090793 None:intergenic
AATAATATGGTAGTAGAATT+GGG 0.381033 3_2:+53091822 None:intergenic
TCTTGAAAGCTAGTTGTGTA+AGG 0.383818 3_2:+53091399 None:intergenic
ACAGCTAATATAGGAACAAT+AGG 0.391827 3_2:+53091104 None:intergenic
GGAAACATTTGTGGAATTTG+AGG 0.396482 3_2:+53091490 None:intergenic
ACTAAAGACTTGCCATGTTA+TGG 0.397777 3_2:+53091196 None:intergenic
TGCACTTTAGTTGCATCTGC+AGG 0.400863 3_2:-53091440 Msa0411000:CDS
GTTGGTTGATATCATTGATT+CGG 0.405416 3_2:-53090832 Msa0411000:three_prime_UTR
TGAATTGGTTCTACTTGAAT+CGG 0.420336 3_2:+53090872 None:intergenic
AAGAAAACCACAGCTAATAT+AGG 0.424462 3_2:+53091095 None:intergenic
TCCAAGAAAATGTATTGGAT+TGG 0.426703 3_2:-53091470 Msa0411000:CDS
TTAGTTGCATCTGCAGGGTA+TGG 0.427771 3_2:-53091434 Msa0411000:CDS
TATATGTTTGGTTAGGGTAT+GGG 0.430559 3_2:-53090790 Msa0411000:three_prime_UTR
ATATATGTTTGGTTAGGGTA+TGG 0.430775 3_2:-53090791 Msa0411000:three_prime_UTR
TATGCAGCACTTGTCTTAGC+AGG 0.431417 3_2:-53091935 Msa0411000:CDS
GGGAGGAAGAAATTGTTAGA+AGG 0.435023 3_2:+53091534 None:intergenic
GAACCATATATGTTTGGTTA+GGG 0.437359 3_2:-53090796 Msa0411000:three_prime_UTR
ATGTTTCCAAGAAAATGTAT+TGG 0.439252 3_2:-53091475 Msa0411000:CDS
ATATGTTTGGTTAGGGTATG+GGG 0.443296 3_2:-53090789 Msa0411000:three_prime_UTR
ATAAGTGTAAAAGTAGAGAC+AGG 0.447522 3_2:+53091644 None:intergenic
TAATGCATTGAAACCTAATT+GGG 0.449877 3_2:+53091613 None:intergenic
GAAGAATGTTTGCTAATGTC+AGG 0.450570 3_2:+53090951 None:intergenic
GAATGGTATAAAGAAAGAAA+TGG 0.452288 3_2:-53091270 Msa0411000:CDS
ACATGGCAAGTCTTTAGTAT+TGG 0.454459 3_2:-53091191 Msa0411000:CDS
CATGATAATATATACACAAT+TGG 0.457768 3_2:-53091339 Msa0411000:CDS
AGCCAAAGAAACATTCTCAT+TGG 0.458851 3_2:-53092041 Msa0411000:CDS
TGTTGTGAACCATATATGTT+TGG 0.459214 3_2:-53090802 Msa0411000:three_prime_UTR
ATAGATAATGTTGAGAATGC+AGG 0.465316 3_2:-53090579 Msa0411000:three_prime_UTR
AACAGCTAGTACCATAGAAA+TGG 0.466085 3_2:+53091046 None:intergenic
GCAACCGTTGTTCAACTAGC+TGG 0.475269 3_2:-53091848 Msa0411000:CDS
CTAAAAGTGTTGCAGCGGAT+TGG 0.480545 3_2:+53091912 None:intergenic
TTCTTTCAAGACAAAATGCA+TGG 0.482674 3_2:-53091077 Msa0411000:CDS
TGGAATTTGAGGACTCACTT+TGG 0.488137 3_2:+53091501 None:intergenic
GCTACTTGTATTACTCTAGT+AGG 0.496365 3_2:-53091314 Msa0411000:CDS
TTAATGGAATCGACAACTCT+AGG 0.502719 3_2:+53090546 None:intergenic
ATGTATGTAGATGATTGATT+TGG 0.505941 3_2:+53091746 None:intergenic
AGAAATGGAAGATTATGAGT+TGG 0.508458 3_2:-53091255 Msa0411000:CDS
TATTGTTCCTATATTAGCTG+TGG 0.512942 3_2:-53091102 Msa0411000:CDS
CTTTCAAGAAGGTTGTGAAA+AGG 0.516513 3_2:-53091385 Msa0411000:CDS
TGGCTATGAAAGTGAGATCA+AGG 0.518558 3_2:+53091216 None:intergenic
CTTGAGTGAATTGAGGAAGT+AGG 0.525823 3_2:+53091586 None:intergenic
GAAAAGAATATACTATATCA+AGG 0.526990 3_2:-53091966 Msa0411000:CDS
ACTAAAGAGTTGATTATGAA+AGG 0.535009 3_2:+53091557 None:intergenic
CTTGAAAGCTAGTTGTGTAA+GGG 0.540792 3_2:+53091400 None:intergenic
AGTGAATGAAATAACTTGAG+AGG 0.541882 3_2:+53093561 None:intergenic
CATTCTTCAACTTTAGAAGA+GGG 0.542067 3_2:-53090936 Msa0411000:CDS
AGGACTCACTTTGGAACACA+AGG 0.547523 3_2:+53091510 None:intergenic
TAGAAGAGGGTGACTGAAGA+GGG 0.548566 3_2:-53090923 Msa0411000:exon
AAGAGGGTGATTGTCGATCT+GGG 0.548628 3_2:-53090907 Msa0411000:three_prime_UTR
AAGCTAGTTGTGTAAGGGAA+AGG 0.557780 3_2:+53091405 None:intergenic
TACACAACTAGCTTTCAAGA+AGG 0.562208 3_2:-53091396 Msa0411000:CDS
AATATGTAAGAAGATTAGGT+TGG 0.563859 3_2:-53090850 Msa0411000:three_prime_UTR
TCTTTCAAGACAAAATGCAT+GGG 0.582272 3_2:-53091076 Msa0411000:CDS
TCTATGGTACTAGCTGTTTG+GGG 0.589297 3_2:-53091041 Msa0411000:CDS
TTTGCAAGTGGAGAGTGGAA+TGG 0.589737 3_2:-53091287 Msa0411000:CDS
GCACTTTAGTTGCATCTGCA+GGG 0.593181 3_2:-53091439 Msa0411000:CDS
ACATTCTTCAACTTTAGAAG+AGG 0.593996 3_2:-53090937 Msa0411000:CDS
AGGAGGAAAGAGTAAATGGA+TGG 0.594332 3_2:-53091870 Msa0411000:CDS
TTAGAAGAGGGTGACTGAAG+AGG 0.597747 3_2:-53090924 Msa0411000:exon
TCTTCCTAAAAGTGTTGCAG+CGG 0.607054 3_2:+53091907 None:intergenic
TTTCCAAACCAAATAACGAA+TGG 0.607603 3_2:-53092007 Msa0411000:CDS
AAATGGAAGATTATGAGTTG+GGG 0.615707 3_2:-53091253 Msa0411000:CDS
CTTAATATATGATAATGTGA+AGG 0.616902 3_2:-53090759 Msa0411000:three_prime_UTR
GTGTGAACTTGAGTGAATTG+AGG 0.627114 3_2:+53091579 None:intergenic
CTCACTTTGGAACACAAGGA+GGG 0.640434 3_2:+53091514 None:intergenic
TAAGTGTAAAAGTAGAGACA+GGG 0.654814 3_2:+53091645 None:intergenic
TCACTTTCATAGCCATAACA+TGG 0.656519 3_2:-53091208 Msa0411000:CDS
ACTCACTTTGGAACACAAGG+AGG 0.662657 3_2:+53091513 None:intergenic
ACTTTGGAACACAAGGAGGG+AGG 0.681387 3_2:+53091517 None:intergenic
GAAACCAGCTAGTTGAACAA+CGG 0.701516 3_2:+53091844 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACTTTCAAAAA+CGG - chr3_2:53090748-53090767 Msa0411000:three_prime_UTR 10.0%
!! AAAAAAAAAACTTTCAAAAA+CGG - chr3_2:53090748-53090767 Msa0411000:three_prime_UTR 10.0%
!!! TTTTTTTTTTTATGTAAAAG+TGG - chr3_2:53091879-53091898 Msa0411000:CDS 10.0%
!! ATATCATATATCATTAATAT+TGG + chr3_2:53092011-53092030 None:intergenic 10.0%
!! CTAATAATATCTTTCAAAAA+CGG - chr3_2:53090717-53090736 Msa0411000:three_prime_UTR 15.0%
!! CTAATAATATCTTTCAAAAA+CGG - chr3_2:53090717-53090736 Msa0411000:three_prime_UTR 15.0%
!!! TCTTCTTAATTATTTTAGTA+AGG - chr3_2:53091014-53091033 Msa0411000:CDS 15.0%
!! TTTGAACTAATATTAACTAA+AGG - chr3_2:53091091-53091110 Msa0411000:CDS 15.0%
!!! TTATTTTATTTTTTTTACCG+TGG - chr3_2:53091454-53091473 Msa0411000:CDS 15.0%
!! ACATTTACATATCTATATAT+GGG + chr3_2:53091614-53091633 None:intergenic 15.0%
!! AACATTTACATATCTATATA+TGG + chr3_2:53091615-53091634 None:intergenic 15.0%
!! TACTTCAAAATAATAGAAAA+TGG - chr3_2:53091674-53091693 Msa0411000:CDS 15.0%
!! ATTTATACTACGATAAATAT+TGG - chr3_2:53091842-53091861 Msa0411000:CDS 15.0%
!! AATTGAAAAAAAAAATGCAA+AGG - chr3_2:53091933-53091952 Msa0411000:CDS 15.0%
!!! ATAGTATATTCTTTTCTTAT+TGG + chr3_2:53092149-53092168 None:intergenic 15.0%
!! GATAAGATGAAAAAATAATA+TGG + chr3_2:53092313-53092332 None:intergenic 15.0%
!! AACAATGATATTATTATTTG+TGG + chr3_2:53092350-53092369 None:intergenic 15.0%
!! ATATTTGTATCAACAATATT+TGG - chr3_2:53093110-53093129 Msa0411000:intron 15.0%
!! TTTCATTCACTTTCTAAATA+TGG - chr3_2:53090570-53090589 Msa0411000:three_prime_UTR 20.0%
!! TTCATTCACTTTCTAAATAT+GGG - chr3_2:53090571-53090590 Msa0411000:three_prime_UTR 20.0%
!!! ATTTTAGTAAGGTATATAGT+CGG - chr3_2:53091025-53091044 Msa0411000:CDS 20.0%
!!! AAACAATTTTTTTTACAGAG+AGG + chr3_2:53091235-53091254 None:intergenic 20.0%
!!! CCTTAAATTTTGAAATTTCA+TGG + chr3_2:53091306-53091325 None:intergenic 20.0%
!! CCATGAAATTTCAAAATTTA+AGG - chr3_2:53091303-53091322 Msa0411000:CDS 20.0%
!! CAAAATTTACTCAAATTACA+GGG + chr3_2:53091338-53091357 None:intergenic 20.0%
!! TTACTGACAACTAAAAATAA+AGG + chr3_2:53091582-53091601 None:intergenic 20.0%
!! CATTTACATATCTATATATG+GGG + chr3_2:53091613-53091632 None:intergenic 20.0%
!! TCATTAATATTGGACAAAAT+TGG + chr3_2:53092001-53092020 None:intergenic 20.0%
!! GAAAAGAATATACTATATCA+AGG - chr3_2:53092153-53092172 Msa0411000:intron 20.0%
!! AATAATATGGTAGTAGAATT+GGG + chr3_2:53092300-53092319 None:intergenic 20.0%
!! AAATAATATGGTAGTAGAAT+TGG + chr3_2:53092301-53092320 None:intergenic 20.0%
!!! ATTATTTGTGGTATGTTTTT+TGG + chr3_2:53092338-53092357 None:intergenic 20.0%
!! AGCAAATTAATGCATTAAAT+AGG + chr3_2:53092426-53092445 None:intergenic 20.0%
!!! ATTTGCTACTTATATTCATT+AGG - chr3_2:53092439-53092458 Msa0411000:intron 20.0%
!!! TTTGCTACTTATATTCATTA+GGG - chr3_2:53092440-53092459 Msa0411000:intron 20.0%
!! CATGATAATATATACACAAT+TGG - chr3_2:53092780-53092799 Msa0411000:intron 20.0%
!! AATCTTCTTACATATTGAAT+TGG + chr3_2:53093265-53093284 None:intergenic 20.0%
!! ATTCAATATGTAAGAAGATT+AGG - chr3_2:53093265-53093284 Msa0411000:intron 20.0%
!!! CTTAATATATGATAATGTGA+AGG - chr3_2:53093360-53093379 Msa0411000:intron 20.0%
! AGATCTTCAACTTCAAAAAA+TGG - chr3_2:53090603-53090622 Msa0411000:three_prime_UTR 25.0%
! GATCTTCAACTTCAAAAAAT+GGG - chr3_2:53090604-53090623 Msa0411000:three_prime_UTR 25.0%
! CAAAGAATCTTCAAATTACA+GGG + chr3_2:53091267-53091286 None:intergenic 25.0%
! TCAAAGAATCTTCAAATTAC+AGG + chr3_2:53091268-53091287 None:intergenic 25.0%
! CCAAAATTTACTCAAATTAC+AGG + chr3_2:53091339-53091358 None:intergenic 25.0%
!! CCTGTAATTTGAGTAAATTT+TGG - chr3_2:53091336-53091355 Msa0411000:CDS 25.0%
! ATTGTACAAAATCGATGAAA+TGG + chr3_2:53091373-53091392 None:intergenic 25.0%
! TGTACAATCAAAATTCATGA+AGG - chr3_2:53091385-53091404 Msa0411000:CDS 25.0%
! GATGAACGATATTAGAATTA+AGG + chr3_2:53091526-53091545 None:intergenic 25.0%
! TATACTACGATAAATATTGG+TGG - chr3_2:53091845-53091864 Msa0411000:CDS 25.0%
! ATACTACGATAAATATTGGT+GGG - chr3_2:53091846-53091865 Msa0411000:CDS 25.0%
! TAATTGATCCATTCGTTATT+TGG + chr3_2:53092123-53092142 None:intergenic 25.0%
! GGAAGATTATACTATGAAAA+AGG - chr3_2:53092229-53092248 Msa0411000:intron 25.0%
! AGATTATACTATGAAAAAGG+AGG - chr3_2:53092232-53092251 Msa0411000:intron 25.0%
! ATGTATGTAGATGATTGATT+TGG + chr3_2:53092376-53092395 None:intergenic 25.0%
! TAATGCATTGAAACCTAATT+GGG + chr3_2:53092509-53092528 None:intergenic 25.0%
! ATAATGCATTGAAACCTAAT+TGG + chr3_2:53092510-53092529 None:intergenic 25.0%
!! ACTAAAGAGTTGATTATGAA+AGG + chr3_2:53092565-53092584 None:intergenic 25.0%
! ATGTTTCCAAGAAAATGTAT+TGG - chr3_2:53092644-53092663 Msa0411000:intron 25.0%
!!! GCAAAATTTTAAAAGTGTGA+TGG - chr3_2:53092756-53092775 Msa0411000:intron 25.0%
! GAATGGTATAAAGAAAGAAA+TGG - chr3_2:53092849-53092868 Msa0411000:intron 25.0%
!! TCTAATGCTATAAGTGTTTT+AGG - chr3_2:53092988-53093007 Msa0411000:intron 25.0%
! AATATGTAAGAAGATTAGGT+TGG - chr3_2:53093269-53093288 Msa0411000:intron 25.0%
AGTGAATGAAATAACTTGAG+AGG + chr3_2:53090561-53090580 None:intergenic 30.0%
GGAAAAAATATACGATGAAC+TGG - chr3_2:53090769-53090788 Msa0411000:three_prime_UTR 30.0%
GGAAAAAATATACGATGAAC+TGG - chr3_2:53090769-53090788 Msa0411000:three_prime_UTR 30.0%
! TGTTTTCTGTGGATTCTATT+GGG + chr3_2:53090959-53090978 None:intergenic 30.0%
! TTGTTTTCTGTGGATTCTAT+TGG + chr3_2:53090960-53090979 None:intergenic 30.0%
!! TTCTTACTAGTTGTTTTCTG+TGG + chr3_2:53090970-53090989 None:intergenic 30.0%
ACTAGTAAGAAACACAATCA+TGG - chr3_2:53090979-53090998 Msa0411000:CDS 30.0%
! TTTTCTTGTACTATTAGCGA+TGG - chr3_2:53091149-53091168 Msa0411000:CDS 30.0%
AGTAATTGCAAATATACAGG+GGG + chr3_2:53091206-53091225 None:intergenic 30.0%
CAGTAATTGCAAATATACAG+GGG + chr3_2:53091207-53091226 None:intergenic 30.0%
CCAGTAATTGCAAATATACA+GGG + chr3_2:53091208-53091227 None:intergenic 30.0%
TCCAGTAATTGCAAATATAC+AGG + chr3_2:53091209-53091228 None:intergenic 30.0%
! ATTTGTAGATTCCTTGGTTT+TGG + chr3_2:53091412-53091431 None:intergenic 30.0%
CAAGGAATCTACAAATTACT+GGG - chr3_2:53091416-53091435 Msa0411000:CDS 30.0%
TTGTAATATTAGCGGTTTCT+GGG + chr3_2:53091484-53091503 None:intergenic 30.0%
AGAAACCGCTAATATTACAA+GGG - chr3_2:53091484-53091503 Msa0411000:CDS 30.0%
TTTACCCCTTGTAATATTAG+CGG + chr3_2:53091492-53091511 None:intergenic 30.0%
TAATATCGTTCATCATGTTG+AGG - chr3_2:53091532-53091551 Msa0411000:CDS 30.0%
CTGACAACTAAAAATAAAGG+TGG + chr3_2:53091579-53091598 None:intergenic 30.0%
AATTTGTATCCAACTTTGCT+CGG + chr3_2:53091959-53091978 None:intergenic 30.0%
TTTCCAAACCAAATAACGAA+TGG - chr3_2:53092112-53092131 Msa0411000:intron 30.0%
AAAAAGGAGGAAAGAGTAAA+TGG - chr3_2:53092245-53092264 Msa0411000:intron 30.0%
TAAGTGTAAAAGTAGAGACA+GGG + chr3_2:53092477-53092496 None:intergenic 30.0%
ATAAGTGTAAAAGTAGAGAC+AGG + chr3_2:53092478-53092497 None:intergenic 30.0%
! CATTTTCTTGGAAACATTTG+TGG + chr3_2:53092641-53092660 None:intergenic 30.0%
TCCAAGAAAATGTATTGGAT+TGG - chr3_2:53092649-53092668 Msa0411000:intron 30.0%
! TCCAATCCAATACATTTTCT+TGG + chr3_2:53092653-53092672 None:intergenic 30.0%
AGAAATGGAAGATTATGAGT+TGG - chr3_2:53092864-53092883 Msa0411000:intron 30.0%
GAAATGGAAGATTATGAGTT+GGG - chr3_2:53092865-53092884 Msa0411000:intron 30.0%
AAATGGAAGATTATGAGTTG+GGG - chr3_2:53092866-53092885 Msa0411000:intron 30.0%
! TTGTGTTGGACTAATTTTTG+AGG - chr3_2:53092951-53092970 Msa0411000:intron 30.0%
ACAGCTAATATAGGAACAAT+AGG + chr3_2:53093018-53093037 None:intergenic 30.0%
TATTGTTCCTATATTAGCTG+TGG - chr3_2:53093017-53093036 Msa0411000:intron 30.0%
AAGAAAACCACAGCTAATAT+AGG + chr3_2:53093027-53093046 None:intergenic 30.0%
TTCTTTCAAGACAAAATGCA+TGG - chr3_2:53093042-53093061 Msa0411000:intron 30.0%
TCTTTCAAGACAAAATGCAT+GGG - chr3_2:53093043-53093062 Msa0411000:intron 30.0%
! ACATTCTTCAACTTTAGAAG+AGG - chr3_2:53093182-53093201 Msa0411000:intron 30.0%
! CATTCTTCAACTTTAGAAGA+GGG - chr3_2:53093183-53093202 Msa0411000:intron 30.0%
!! TGAATTGGTTCTACTTGAAT+CGG + chr3_2:53093250-53093269 None:intergenic 30.0%
! GTTGGTTGATATCATTGATT+CGG - chr3_2:53093287-53093306 Msa0411000:intron 30.0%
TGTTGTGAACCATATATGTT+TGG - chr3_2:53093317-53093336 Msa0411000:intron 30.0%
TGAACCATATATGTTTGGTT+AGG - chr3_2:53093322-53093341 Msa0411000:intron 30.0%
GAACCATATATGTTTGGTTA+GGG - chr3_2:53093323-53093342 Msa0411000:intron 30.0%
ATACCCTAACCAAACATATA+TGG + chr3_2:53093329-53093348 None:intergenic 30.0%
ATATATGTTTGGTTAGGGTA+TGG - chr3_2:53093328-53093347 Msa0411000:intron 30.0%
TATATGTTTGGTTAGGGTAT+GGG - chr3_2:53093329-53093348 Msa0411000:intron 30.0%
ATAGATAATGTTGAGAATGC+AGG - chr3_2:53093540-53093559 Msa0411000:exon 30.0%
CCCTGTATATTTGCAATTAC+TGG - chr3_2:53091205-53091224 Msa0411000:CDS 35.0%
! CCAGTAATTTGTAGATTCCT+TGG + chr3_2:53091418-53091437 None:intergenic 35.0%
CCAAGGAATCTACAAATTAC+TGG - chr3_2:53091415-53091434 Msa0411000:CDS 35.0%
CTTGTAATATTAGCGGTTTC+TGG + chr3_2:53091485-53091504 None:intergenic 35.0%
CAGAAACCGCTAATATTACA+AGG - chr3_2:53091483-53091502 Msa0411000:CDS 35.0%
GAAACCGCTAATATTACAAG+GGG - chr3_2:53091485-53091504 Msa0411000:CDS 35.0%
GGTTGTCGTTAATCATGTTT+AGG - chr3_2:53091553-53091572 Msa0411000:CDS 35.0%
AGTGTATTTGCAAGCTAAAC+AGG + chr3_2:53091816-53091835 None:intergenic 35.0%
! AGAATGTTTCTTTGGCTTCA+TGG + chr3_2:53092075-53092094 None:intergenic 35.0%
AGCCAAAGAAACATTCTCAT+TGG - chr3_2:53092078-53092097 Msa0411000:intron 35.0%
CTCCAATGAGAATGTTTCTT+TGG + chr3_2:53092083-53092102 None:intergenic 35.0%
GATCCATTCGTTATTTGGTT+TGG + chr3_2:53092118-53092137 None:intergenic 35.0%
CTTATTTGCTCATCCCAATT+AGG - chr3_2:53092493-53092512 Msa0411000:intron 35.0%
GGAAACATTTGTGGAATTTG+AGG + chr3_2:53092632-53092651 None:intergenic 35.0%
CTTGAAAGCTAGTTGTGTAA+GGG + chr3_2:53092722-53092741 None:intergenic 35.0%
TCTTGAAAGCTAGTTGTGTA+AGG + chr3_2:53092723-53092742 None:intergenic 35.0%
!! TACACAACTAGCTTTCAAGA+AGG - chr3_2:53092723-53092742 Msa0411000:intron 35.0%
CTTTCAAGAAGGTTGTGAAA+AGG - chr3_2:53092734-53092753 Msa0411000:intron 35.0%
GCTACTTGTATTACTCTAGT+AGG - chr3_2:53092805-53092824 Msa0411000:intron 35.0%
TCACTTTCATAGCCATAACA+TGG - chr3_2:53092911-53092930 Msa0411000:intron 35.0%
ACTAAAGACTTGCCATGTTA+TGG + chr3_2:53092926-53092945 None:intergenic 35.0%
ACATGGCAAGTCTTTAGTAT+TGG - chr3_2:53092928-53092947 Msa0411000:intron 35.0%
!! GTCTTTAGTATTGGTTGTGT+TGG - chr3_2:53092937-53092956 Msa0411000:intron 35.0%
AGACAAAATGCATGGGATTA+AGG - chr3_2:53093050-53093069 Msa0411000:intron 35.0%
AACAGCTAGTACCATAGAAA+TGG + chr3_2:53093076-53093095 None:intergenic 35.0%
TTTCTATGGTACTAGCTGTT+TGG - chr3_2:53093076-53093095 Msa0411000:intron 35.0%
TTCTATGGTACTAGCTGTTT+GGG - chr3_2:53093077-53093096 Msa0411000:intron 35.0%
! GAAGAATGTTTGCTAATGTC+AGG + chr3_2:53093171-53093190 None:intergenic 35.0%
ATATGTTTGGTTAGGGTATG+GGG - chr3_2:53093330-53093349 Msa0411000:intron 35.0%
TTAATGGAATCGACAACTCT+AGG + chr3_2:53093576-53093595 None:intergenic 35.0%
!! TAGAGTTGTCGATTCCATTA+AGG - chr3_2:53093575-53093594 Msa0411000:five_prime_UTR 35.0%
GTATATAGTCGGTGAATGAG+TGG - chr3_2:53091036-53091055 Msa0411000:CDS 40.0%
TTCATGAAGGTCCAAAACCA+AGG - chr3_2:53091398-53091417 Msa0411000:CDS 40.0%
ATACATGTAGACACACGTGA+GGG + chr3_2:53091775-53091794 None:intergenic 40.0%
!! TCTTCCTAAAAGTGTTGCAG+CGG + chr3_2:53092215-53092234 None:intergenic 40.0%
AGGAGGAAAGAGTAAATGGA+TGG - chr3_2:53092249-53092268 Msa0411000:intron 40.0%
GAAACCAGCTAGTTGAACAA+CGG + chr3_2:53092278-53092297 None:intergenic 40.0%
! GCTTTTGTCTATGTCTCACT+TGG - chr3_2:53092400-53092419 Msa0411000:intron 40.0%
CTTGAGTGAATTGAGGAAGT+AGG + chr3_2:53092536-53092555 None:intergenic 40.0%
GTGTGAACTTGAGTGAATTG+AGG + chr3_2:53092543-53092562 None:intergenic 40.0%
GGGAGGAAGAAATTGTTAGA+AGG + chr3_2:53092588-53092607 None:intergenic 40.0%
TGGAATTTGAGGACTCACTT+TGG + chr3_2:53092621-53092640 None:intergenic 40.0%
AAGCTAGTTGTGTAAGGGAA+AGG + chr3_2:53092717-53092736 None:intergenic 40.0%
! CTAGTAGGACTTTTTGCAAG+TGG - chr3_2:53092820-53092839 Msa0411000:intron 40.0%
TGGCTATGAAAGTGAGATCA+AGG + chr3_2:53092906-53092925 None:intergenic 40.0%
TGGGATTAAGGCCATTTCTA+TGG - chr3_2:53093062-53093081 Msa0411000:intron 40.0%
TCTATGGTACTAGCTGTTTG+GGG - chr3_2:53093078-53093097 Msa0411000:intron 40.0%
!! GTCAGGAGTGTTTCTTGTTT+CGG + chr3_2:53093154-53093173 None:intergenic 40.0%
TCGGTGAATGAGTGGTAGAA+AGG - chr3_2:53091044-53091063 Msa0411000:CDS 45.0%
CATACATGTAGACACACGTG+AGG + chr3_2:53091776-53091795 None:intergenic 45.0%
TATGCAGCACTTGTCTTAGC+AGG - chr3_2:53092184-53092203 Msa0411000:intron 45.0%
!! CTAAAAGTGTTGCAGCGGAT+TGG + chr3_2:53092210-53092229 None:intergenic 45.0%
! CAATCCGCTGCAACACTTTT+AGG - chr3_2:53092208-53092227 Msa0411000:intron 45.0%
!! CTCACTTTGGAACACAAGGA+GGG + chr3_2:53092608-53092627 None:intergenic 45.0%
!! ACTCACTTTGGAACACAAGG+AGG + chr3_2:53092609-53092628 None:intergenic 45.0%
!! AGGACTCACTTTGGAACACA+AGG + chr3_2:53092612-53092631 None:intergenic 45.0%
TGCACTTTAGTTGCATCTGC+AGG - chr3_2:53092679-53092698 Msa0411000:intron 45.0%
GCACTTTAGTTGCATCTGCA+GGG - chr3_2:53092680-53092699 Msa0411000:intron 45.0%
TTAGTTGCATCTGCAGGGTA+TGG - chr3_2:53092685-53092704 Msa0411000:intron 45.0%
! GACTTTTTGCAAGTGGAGAG+TGG - chr3_2:53092827-53092846 Msa0411000:intron 45.0%
TTTGCAAGTGGAGAGTGGAA+TGG - chr3_2:53092832-53092851 Msa0411000:intron 45.0%
TTAGAAGAGGGTGACTGAAG+AGG - chr3_2:53093195-53093214 Msa0411000:intron 45.0%
TAGAAGAGGGTGACTGAAGA+GGG - chr3_2:53093196-53093215 Msa0411000:intron 45.0%
AAGAGGGTGATTGTCGATCT+GGG - chr3_2:53093212-53093231 Msa0411000:intron 45.0%
! AGCGGTTTCTGGGTTATCCA+CGG + chr3_2:53091474-53091493 None:intergenic 50.0%
ATGCAAAGGCCGAGCAAAGT+TGG - chr3_2:53091947-53091966 Msa0411000:CDS 50.0%
GCAACCGTTGTTCAACTAGC+TGG - chr3_2:53092271-53092290 Msa0411000:intron 50.0%
!! ACTTTGGAACACAAGGAGGG+AGG + chr3_2:53092605-53092624 None:intergenic 50.0%
GAAGAGGGTGATTGTCGATC+TGG - chr3_2:53093211-53093230 Msa0411000:intron 50.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 53090533 53093608 53090533 ID=Msa0411000;Name=Msa0411000
chr3_2 mRNA 53090533 53093608 53090533 ID=Msa0411000-mRNA-1;Parent=Msa0411000;Name=Msa0411000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|1|1|2|396|393
chr3_2 exon 53090533 53092073 53090533 ID=Msa0411000-mRNA-1:exon:10543;Parent=Msa0411000-mRNA-1
chr3_2 exon 53093516 53093608 53093516 ID=Msa0411000-mRNA-1:exon:10542;Parent=Msa0411000-mRNA-1
chr3_2 five_prime_UTR 53093553 53093608 53093553 ID=Msa0411000-mRNA-1:five_prime_utr;Parent=Msa0411000-mRNA-1
chr3_2 CDS 53093516 53093552 53093516 ID=Msa0411000-mRNA-1:cds;Parent=Msa0411000-mRNA-1
chr3_2 CDS 53090929 53092073 53090929 ID=Msa0411000-mRNA-1:cds;Parent=Msa0411000-mRNA-1
chr3_2 three_prime_UTR 53090533 53090928 53090533 ID=Msa0411000-mRNA-1:three_prime_utr;Parent=Msa0411000-mRNA-1
Gene Sequence

>Msa0411000

ATGGGAGAAGCTCAAGATCTTCAACTTCAAAAAATGGAAGTCCATGAAGCCAAAGAAACATTCTCATTGGAGCAAAATAGCTTTCCAAACCAAATAACGAATGGATCAATTATGACCAATAAGAAAAGAATATACTATATCAAGGTAGCAATTTATGCAGCACTTGTCTTAGCAGGCCAATCCGCTGCAACACTTTTAGGAAGATTATACTATGAAAAAGGAGGAAAGAGTAAATGGATGGCAACCGTTGTTCAACTAGCTGGTTTCCCAATTCTACTACCATATTATTTTTTCATCTTATCATCCAAAAAACATACCACAAATAATAATATCATTGTTGATCCAAATCAATCATCTACATACATGCTAGCTTTTGTCTATGTCTCACTTGGCCTATTTAATGCATTAATTTGCTACTTATATTCATTAGGGCTAATGTATCTCCCTGTCTCTACTTTTACACTTATTTGCTCATCCCAATTAGGTTTCAATGCATTATTTTCCTACTTCCTCAATTCACTCAAGTTCACACCTTTCATAATCAACTCTTTAGTCCTTCTAACAATTTCTTCCTCCCTCCTTGTGTTCCAAAGTGAGTCCTCAAATTCCACAAATGTTTCCAAGAAAATGTATTGGATTGGATTCATATGCACTTTAGTTGCATCTGCAGGGTATGGATTGATCCTTTCCCTTACACAACTAGCTTTCAAGAAGGTTGTGAAAAGGCAAAATTTTAAAAGTGTGATGGACATGATAATATATACACAATTGGTAGCTACTTGTATTACTCTAGTAGGACTTTTTGCAAGTGGAGAGTGGAATGGTATAAAGAAAGAAATGGAAGATTATGAGTTGGGGAAAGCTTCTTATGTCCTTGATCTCACTTTCATAGCCATAACATGGCAAGTCTTTAGTATTGGTTGTGTTGGACTAATTTTTGAGGTTTCTTCGCTATTCTCTAATGCTATAAGTGTTTTAGGTTTGCCTATTGTTCCTATATTAGCTGTGGTTTTCTTTCAAGACAAAATGCATGGGATTAAGGCCATTTCTATGGTACTAGCTGTTTGGGGCTTCATATCATATTTGTATCAACAATATTTGGATGAGAATGACATTATAACCGAAACAAGAAACACTCCTGACATTAGCAAACATTCTTCAACTTTAGAAGAGGGTGACTGA

Protein sequence

>Msa0411000

MGEAQDLQLQKMEVHEAKETFSLEQNSFPNQITNGSIMTNKKRIYYIKVAIYAALVLAGQSAATLLGRLYYEKGGKSKWMATVVQLAGFPILLPYYFFILSSKKHTTNNNIIVDPNQSSTYMLAFVYVSLGLFNALICYLYSLGLMYLPVSTFTLICSSQLGFNALFSYFLNSLKFTPFIINSLVLLTISSSLLVFQSESSNSTNVSKKMYWIGFICTLVASAGYGLILSLTQLAFKKVVKRQNFKSVMDMIIYTQLVATCITLVGLFASGEWNGIKKEMEDYELGKASYVLDLTFIAITWQVFSIGCVGLIFEVSSLFSNAISVLGLPIVPILAVVFFQDKMHGIKAISMVLAVWGFISYLYQQYLDENDIITETRNTPDISKHSSTLEEGD*