AlfalfaGEDB | Msa0411000

M. sativa cultivar zhongmu-4 / Msa0411000

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823
PFAM: PF16913.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411000	XP_013460018.2	94.402	393	22	0	1	393	1	393	0.0	751

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411000	sp\|O49726\|PUP21_ARATH	55.949	395	163	4	1	391	1	388	2.60e-149	431

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411000	A0A396IWQ7	94.402	393	22	0	1	393	1	393	0.0	751

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004350	Msa0411000	0.846566	2.003902e-59	-8.615850e-47
Msa0005690	Msa0411000	0.814088	1.841154e-51	-8.615850e-47
Msa0006700	Msa0411000	0.910669	1.445943e-82	-8.615850e-47
Msa0007230	Msa0411000	0.849921	2.370481e-60	-8.615850e-47
Msa0008330	Msa0411000	0.854311	1.339781e-61	-8.615850e-47
Msa0008850	Msa0411000	0.864198	1.444589e-64	-8.615850e-47
Msa0011720	Msa0411000	0.849553	3.002950e-60	-8.615850e-47
Msa0012740	Msa0411000	0.811751	5.985585e-51	-8.615850e-47
Msa0012780	Msa0411000	-0.823831	1.120544e-53	-8.615850e-47
Msa0012820	Msa0411000	-0.805819	1.110615e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411000	MtrunA17_Chr3g0102091	94.402	393	22	0	1	393	1	393	0.0	751
Msa0411000	MtrunA17_Chr4g0055041	51.744	344	161	3	45	384	33	375	4.91e-119	350
Msa0411000	MtrunA17_Chr2g0283381	46.448	366	186	3	12	370	1	363	6.07e-111	330
Msa0411000	MtrunA17_Chr7g0249781	49.848	329	160	2	41	369	23	346	6.85e-100	301
Msa0411000	MtrunA17_Chr6g0483671	77.326	172	32	1	219	390	5	169	1.69e-89	267
Msa0411000	MtrunA17_Chr3g0132551	35.077	325	201	4	51	365	20	344	8.97e-59	195
Msa0411000	MtrunA17_Chr5g0426921	33.735	332	215	3	59	386	32	362	2.02e-53	181
Msa0411000	MtrunA17_Chr3g0132561	30.994	342	191	4	34	365	3	309	1.91e-49	170
Msa0411000	MtrunA17_Chr8g0346091	34.395	314	189	3	62	371	68	368	3.73e-48	167
Msa0411000	MtrunA17_Chr2g0296491	32.320	362	219	9	3	357	31	373	9.85e-40	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411000	AT4G18220.1	55.949	395	163	4	1	391	1	388	2.64e-150	431
Msa0411000	AT4G18210.1	56.443	388	155	4	1	381	1	381	4.13e-146	420
Msa0411000	AT4G18205.1	49.870	385	173	5	5	389	13	377	7.07e-119	350
Msa0411000	AT4G18195.1	51.058	378	180	3	16	393	16	388	3.98e-114	338
Msa0411000	AT4G18197.1	47.949	390	190	4	9	392	1	383	3.28e-112	333
Msa0411000	AT4G18190.1	51.771	367	163	4	12	371	2	361	5.65e-109	325
Msa0411000	AT1G44750.1	48.000	325	163	1	45	369	42	360	1.06e-94	288
Msa0411000	AT1G44750.6	48.000	325	163	1	45	369	30	348	1.30e-94	288
Msa0411000	AT1G44750.2	48.000	325	163	1	45	369	30	348	1.30e-94	288
Msa0411000	AT4G08700.1	41.351	370	195	4	1	369	1	349	4.78e-84	261

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Find 98 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATATGGTAGTAGAAT+TGG	0.273685	3_2:+53091821	None:intergenic
AAATGGAAGATTATGAGTTG+GGG	0.615707	3_2:-53091253	Msa0411000:CDS
AACAATGATATTATTATTTG+TGG	0.348869	3_2:+53091772	None:intergenic
AACAGCTAGTACCATAGAAA+TGG	0.466085	3_2:+53091046	None:intergenic
AAGAAAACCACAGCTAATAT+AGG	0.424462	3_2:+53091095	None:intergenic
AAGAGGGTGATTGTCGATCT+GGG	0.548628	3_2:-53090907	Msa0411000:three_prime_UTR
AAGCTAGTTGTGTAAGGGAA+AGG	0.557780	3_2:+53091405	None:intergenic
AATAATATGGTAGTAGAATT+GGG	0.381033	3_2:+53091822	None:intergenic
AATATGTAAGAAGATTAGGT+TGG	0.563859	3_2:-53090850	Msa0411000:three_prime_UTR
AATCTTCTTACATATTGAAT+TGG	0.378814	3_2:+53090857	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGAATGAAATAACTTGAG+AGG	+	chr3_2:53090561-53090580	None:intergenic	30.0%
GGAAAAAATATACGATGAAC+TGG	-	chr3_2:53090769-53090788	Msa0411000:three_prime_UTR	30.0%
GGAAAAAATATACGATGAAC+TGG	-	chr3_2:53090769-53090788	Msa0411000:three_prime_UTR	30.0%
ACTAGTAAGAAACACAATCA+TGG	-	chr3_2:53090979-53090998	Msa0411000:CDS	30.0%
AGTAATTGCAAATATACAGG+GGG	+	chr3_2:53091206-53091225	None:intergenic	30.0%
CAGTAATTGCAAATATACAG+GGG	+	chr3_2:53091207-53091226	None:intergenic	30.0%
CCAGTAATTGCAAATATACA+GGG	+	chr3_2:53091208-53091227	None:intergenic	30.0%
TCCAGTAATTGCAAATATAC+AGG	+	chr3_2:53091209-53091228	None:intergenic	30.0%
CAAGGAATCTACAAATTACT+GGG	-	chr3_2:53091416-53091435	Msa0411000:CDS	30.0%
TTGTAATATTAGCGGTTTCT+GGG	+	chr3_2:53091484-53091503	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	53090533	53093608	53090533	ID=Msa0411000;Name=Msa0411000
chr3_2	mRNA	53090533	53093608	53090533	ID=Msa0411000-mRNA-1;Parent=Msa0411000;Name=Msa0411000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56\|1\|1\|1\|1\|1\|2\|396\|393
chr3_2	exon	53090533	53092073	53090533	ID=Msa0411000-mRNA-1:exon:10543;Parent=Msa0411000-mRNA-1
chr3_2	exon	53093516	53093608	53093516	ID=Msa0411000-mRNA-1:exon:10542;Parent=Msa0411000-mRNA-1
chr3_2	five_prime_UTR	53093553	53093608	53093553	ID=Msa0411000-mRNA-1:five_prime_utr;Parent=Msa0411000-mRNA-1
chr3_2	CDS	53093516	53093552	53093516	ID=Msa0411000-mRNA-1:cds;Parent=Msa0411000-mRNA-1
chr3_2	CDS	53090929	53092073	53090929	ID=Msa0411000-mRNA-1:cds;Parent=Msa0411000-mRNA-1
chr3_2	three_prime_UTR	53090533	53090928	53090533	ID=Msa0411000-mRNA-1:three_prime_utr;Parent=Msa0411000-mRNA-1

Gene Sequence

>Msa0411000

ATGGGAGAAGCTCAAGATCTTCAACTTCAAAAAATGGAAGTCCATGAAGCCAAAGAAACATTCTCATTGGAGCAAAATAGCTTTCCAAACCAAATAACGAATGGATCAATTATGACCAATAAGAAAAGAATATACTATATCAAGGTAGCAATTTATGCAGCACTTGTCTTAGCAGGCCAATCCGCTGCAACACTTTTAGGAAGATTATACTATGAAAAAGGAGGAAAGAGTAAATGGATGGCAACCGTTGTTCAACTAGCTGGTTTCCCAATTCTACTACCATATTATTTTTTCATCTTATCATCCAAAAAACATACCACAAATAATAATATCATTGTTGATCCAAATCAATCATCTACATACATGCTAGCTTTTGTCTATGTCTCACTTGGCCTATTTAATGCATTAATTTGCTACTTATATTCATTAGGGCTAATGTATCTCCCTGTCTCTACTTTTACACTTATTTGCTCATCCCAATTAGGTTTCAATGCATTATTTTCCTACTTCCTCAATTCACTCAAGTTCACACCTTTCATAATCAACTCTTTAGTCCTTCTAACAATTTCTTCCTCCCTCCTTGTGTTCCAAAGTGAGTCCTCAAATTCCACAAATGTTTCCAAGAAAATGTATTGGATTGGATTCATATGCACTTTAGTTGCATCTGCAGGGTATGGATTGATCCTTTCCCTTACACAACTAGCTTTCAAGAAGGTTGTGAAAAGGCAAAATTTTAAAAGTGTGATGGACATGATAATATATACACAATTGGTAGCTACTTGTATTACTCTAGTAGGACTTTTTGCAAGTGGAGAGTGGAATGGTATAAAGAAAGAAATGGAAGATTATGAGTTGGGGAAAGCTTCTTATGTCCTTGATCTCACTTTCATAGCCATAACATGGCAAGTCTTTAGTATTGGTTGTGTTGGACTAATTTTTGAGGTTTCTTCGCTATTCTCTAATGCTATAAGTGTTTTAGGTTTGCCTATTGTTCCTATATTAGCTGTGGTTTTCTTTCAAGACAAAATGCATGGGATTAAGGCCATTTCTATGGTACTAGCTGTTTGGGGCTTCATATCATATTTGTATCAACAATATTTGGATGAGAATGACATTATAACCGAAACAAGAAACACTCCTGACATTAGCAAACATTCTTCAACTTTAGAAGAGGGTGACTGA

Protein sequence

>Msa0411000

MGEAQDLQLQKMEVHEAKETFSLEQNSFPNQITNGSIMTNKKRIYYIKVAIYAALVLAGQSAATLLGRLYYEKGGKSKWMATVVQLAGFPILLPYYFFILSSKKHTTNNNIIVDPNQSSTYMLAFVYVSLGLFNALICYLYSLGLMYLPVSTFTLICSSQLGFNALFSYFLNSLKFTPFIINSLVLLTISSSLLVFQSESSNSTNVSKKMYWIGFICTLVASAGYGLILSLTQLAFKKVVKRQNFKSVMDMIIYTQLVATCITLVGLFASGEWNGIKKEMEDYELGKASYVLDLTFIAITWQVFSIGCVGLIFEVSSLFSNAISVLGLPIVPILAVVFFQDKMHGIKAISMVLAVWGFISYLYQQYLDENDIITETRNTPDISKHSSTLEEGD*