AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0252840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252840 MtrunA17_Chr2g0311661 88.294 299 27 2 1 299 1 291 0.0 551
Msa0252840 MtrunA17_Chr2g0311651 79.808 312 50 1 1 299 1 312 0.0 517
Msa0252840 MtrunA17_Chr5g0442771 51.890 291 123 8 18 295 14 300 1.74e-95 284
Msa0252840 MtrunA17_Chr5g0417001 50.746 268 107 11 19 280 11 259 1.33e-74 233
Msa0252840 MtrunA17_Chr8g0361731 61.905 168 59 3 19 186 11 173 1.21e-71 226
Msa0252840 MtrunA17_Chr6g0453131 45.520 279 116 9 3 262 1 262 6.29e-68 216
Msa0252840 MtrunA17_Chr4g0076731 50.888 169 66 4 18 186 50 201 3.44e-50 171
Msa0252840 MtrunA17_Chr2g0318081 51.744 172 67 4 24 195 18 173 6.31e-50 169
Msa0252840 MtrunA17_Chr8g0359921 39.544 263 136 8 24 280 16 261 1.85e-49 167
Msa0252840 MtrunA17_Chr3g0124761 53.529 170 65 6 24 193 9 164 2.82e-49 165
Msa0252840 MtrunA17_Chr7g0252971 47.929 169 75 5 24 187 10 170 4.92e-49 166
Msa0252840 MtrunA17_Chr2g0318101 45.143 175 85 4 24 194 17 184 8.36e-49 166
Msa0252840 MtrunA17_Chr4g0047841 45.213 188 84 4 24 197 17 199 4.09e-48 164
Msa0252840 MtrunA17_Chr8g0384721 49.693 163 69 4 24 186 9 158 1.11e-47 161
Msa0252840 MtrunA17_Chr5g0417791 48.466 163 72 3 24 186 5 155 1.83e-47 159
Msa0252840 MtrunA17_Chr4g0018391 45.614 171 73 4 21 189 7 159 2.03e-47 162
Msa0252840 MtrunA17_Chr4g0042561 49.091 165 68 4 24 186 11 161 2.88e-47 159
Msa0252840 MtrunA17_Chr5g0398971 46.512 172 72 5 21 189 7 161 1.05e-46 160
Msa0252840 MtrunA17_Chr7g0263931 44.643 168 83 3 24 191 13 170 3.90e-46 158
Msa0252840 MtrunA17_Chr3g0091921 40.090 222 111 6 9 224 1 206 3.97e-46 157
Msa0252840 MtrunA17_Chr2g0326361 45.238 168 82 3 24 191 16 173 8.00e-46 157
Msa0252840 MtrunA17_Chr4g0056541 44.199 181 81 5 21 199 7 169 1.31e-45 157
Msa0252840 MtrunA17_Chr5g0405211 39.806 206 104 4 21 224 8 195 2.41e-45 157
Msa0252840 MtrunA17_Chr7g0253011 44.271 192 92 5 9 197 1 180 6.03e-45 156
Msa0252840 MtrunA17_Chr4g0060931 42.347 196 94 5 16 207 12 192 6.11e-45 155
Msa0252840 MtrunA17_Chr6g0461661 42.000 200 101 4 10 206 3 190 2.30e-44 155
Msa0252840 MtrunA17_Chr2g0309891 45.665 173 75 5 24 195 8 162 2.50e-44 154
Msa0252840 MtrunA17_Chr6g0453451 45.556 180 81 6 15 192 12 176 9.57e-44 152
Msa0252840 MtrunA17_Chr3g0130731 50.000 160 66 6 24 183 9 154 1.09e-43 150
Msa0252840 MtrunA17_Chr6g0481091 44.848 165 75 3 24 187 8 157 1.18e-43 149
Msa0252840 MtrunA17_Chr8g0346001 43.678 174 89 4 15 186 9 175 1.32e-43 154
Msa0252840 MtrunA17_Chr2g0309331 40.722 194 95 6 21 212 10 185 1.74e-43 152
Msa0252840 MtrunA17_Chr7g0214071 45.556 180 77 6 9 186 1 161 5.11e-43 148
Msa0252840 MtrunA17_Chr3g0109821 47.619 168 69 5 24 188 8 159 5.59e-43 156
Msa0252840 MtrunA17_Chr8g0372121 43.860 171 76 4 21 189 6 158 9.81e-43 149
Msa0252840 MtrunA17_Chr5g0433781 46.386 166 73 4 24 188 8 158 1.05e-42 155
Msa0252840 MtrunA17_Chr8g0385991 46.386 166 78 4 24 189 16 170 5.78e-42 144
Msa0252840 MtrunA17_Chr6g0484441 41.143 175 84 4 18 192 2 157 6.34e-42 147
Msa0252840 MtrunA17_Chr1g0200561 42.529 174 80 4 15 186 13 168 5.40e-41 145
Msa0252840 MtrunA17_Chr4g0038751 45.181 166 82 3 1 166 1 157 1.47e-40 143
Msa0252840 MtrunA17_Chr2g0316971 53.488 129 57 2 24 152 25 150 1.85e-40 144
Msa0252840 MtrunA17_Chr3g0139331 43.787 169 79 3 24 192 13 165 3.16e-40 143
Msa0252840 MtrunA17_Chr4g0054791 38.571 210 106 6 24 232 8 195 3.94e-40 142
Msa0252840 MtrunA17_Chr5g0400461 42.262 168 79 3 24 187 8 161 5.59e-40 142
Msa0252840 MtrunA17_Chr2g0312321 37.083 240 122 8 24 263 13 223 7.41e-40 141
Msa0252840 MtrunA17_Chr7g0217721 38.991 218 114 6 1 210 1 207 9.64e-40 142
Msa0252840 MtrunA17_Chr4g0017921 37.879 198 94 5 21 216 8 178 1.39e-39 142
Msa0252840 MtrunA17_Chr1g0147421 39.683 189 96 5 5 192 11 182 2.20e-39 141
Msa0252840 MtrunA17_Chr1g0197361 43.275 171 79 4 24 192 10 164 1.61e-38 143
Msa0252840 MtrunA17_Chr1g0183741 34.375 224 122 5 24 247 12 210 1.71e-38 137
Msa0252840 MtrunA17_Chr7g0217711 44.848 165 77 4 1 162 1 154 7.08e-38 132
Msa0252840 MtrunA17_Chr1g0201021 48.855 131 62 2 23 152 20 146 1.17e-37 140
Msa0252840 MtrunA17_Chr3g0131911 37.441 211 111 5 24 234 16 205 1.32e-37 133
Msa0252840 MtrunA17_Chr3g0092671 43.860 171 78 5 24 192 7 161 1.41e-36 137
Msa0252840 MtrunA17_Chr1g0197351 43.636 165 83 3 24 187 44 199 1.85e-36 135
Msa0252840 MtrunA17_Chr8g0364791 41.212 165 81 3 23 186 7 156 1.95e-36 135
Msa0252840 MtrunA17_Chr3g0130101 40.606 165 82 3 23 186 8 157 1.98e-36 133
Msa0252840 MtrunA17_Chr5g0428991 41.477 176 86 5 12 186 16 175 3.04e-36 137
Msa0252840 MtrunA17_Chr3g0144271 43.871 155 82 4 1 154 3 153 4.36e-36 134
Msa0252840 MtrunA17_Chr3g0128151 40.331 181 91 5 8 187 9 173 6.06e-36 135
Msa0252840 MtrunA17_Chr8g0384201 40.000 165 83 3 23 186 7 156 1.81e-35 133
Msa0252840 MtrunA17_Chr3g0128111 40.244 164 82 5 25 187 45 193 4.98e-34 124
Msa0252840 MtrunA17_Chr7g0261411 40.373 161 78 3 24 184 12 154 6.87e-34 125
Msa0252840 MtrunA17_Chr8g0345671 39.521 167 79 6 20 184 10 156 2.63e-32 123
Msa0252840 MtrunA17_Chr4g0026141 37.273 220 112 8 19 224 2 209 7.93e-32 119
Msa0252840 MtrunA17_Chr8g0345691 39.286 168 80 6 19 184 10 157 2.27e-30 118
Msa0252840 MtrunA17_Chr8g0345711 41.844 141 76 5 19 157 10 146 7.28e-28 106
Msa0252840 MtrunA17_Chr7g0266701 34.270 178 102 6 19 191 2 169 1.21e-27 107
Msa0252840 MtrunA17_Chr2g0321631 37.576 165 87 5 24 183 6 159 1.51e-27 107
Msa0252840 MtrunA17_Chr2g0321741 38.519 135 72 3 42 169 12 142 4.33e-26 105
Msa0252840 MtrunA17_Chr4g0050701 31.707 164 96 4 24 187 13 160 8.19e-25 98.6
Msa0252840 MtrunA17_Chr8g0345731 35.099 151 91 5 19 165 22 169 2.16e-23 94.4
Msa0252840 MtrunA17_Chr8g0345721 36.306 157 66 4 25 150 38 191 4.05e-23 94.7
Msa0252840 MtrunA17_Chr3g0113001 37.956 137 72 3 75 210 17 141 1.92e-22 94.7
Msa0252840 MtrunA17_Chr8g0345741 40.000 120 67 4 33 150 2 118 8.07e-21 87.0
Msa0252840 MtrunA17_Chr7g0251651 34.839 155 82 7 1 150 1 141 1.37e-19 84.7
Msa0252840 MtrunA17_Chr7g0243371 50.000 80 38 1 76 155 17 94 5.04e-19 80.9
Msa0252840 MtrunA17_Chr8g0345701 38.028 142 67 7 25 150 10 146 1.98e-18 81.3
Msa0252840 MtrunA17_Chr7g0251671 33.793 145 85 7 14 156 3 138 5.85e-18 79.3
Msa0252840 MtrunA17_Chr7g0251661 33.103 145 89 5 14 157 3 140 1.40e-17 78.2
Msa0252840 MtrunA17_Chr3g0113031 41.121 107 51 4 87 192 4 99 3.54e-17 79.7
Msa0252840 MtrunA17_Chr8g0384351 30.675 163 77 7 24 186 12 138 6.35e-17 77.0
Msa0252840 MtrunA17_Chr3g0130321 30.303 165 95 6 24 183 9 158 5.89e-16 75.1
Msa0252840 MtrunA17_Chr1g0194791 65.957 47 15 1 24 69 48 94 6.98e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252840 AT2G43000.1 69.886 176 38 4 16 191 12 172 4.73e-84 254
Msa0252840 AT3G12910.1 56.889 225 81 6 10 231 9 220 7.91e-81 247
Msa0252840 AT5G39820.1 53.125 224 83 7 9 214 5 224 5.75e-72 225
Msa0252840 AT1G26870.1 61.310 168 60 3 19 186 13 175 2.33e-67 216
Msa0252840 AT2G02450.1 49.215 191 76 7 23 212 52 222 2.92e-53 178
Msa0252840 AT2G02450.2 49.215 191 76 7 23 212 52 222 4.60e-53 179
Msa0252840 AT3G04070.1 48.588 177 77 4 24 187 12 187 4.62e-53 177
Msa0252840 AT3G04070.2 50.909 165 75 4 24 187 12 171 6.89e-53 176
Msa0252840 AT1G61110.1 45.918 196 90 5 8 197 3 188 2.93e-51 172
Msa0252840 AT1G69490.1 51.534 163 67 4 24 186 11 161 3.72e-50 167
Msa0252840 AT1G01720.1 50.867 173 71 5 24 195 9 168 8.18e-49 164
Msa0252840 AT3G15510.1 42.254 213 93 6 26 215 21 226 8.69e-49 166
Msa0252840 AT1G52890.1 48.404 188 76 5 24 209 16 184 1.99e-48 164
Msa0252840 AT4G27410.2 46.739 184 81 5 24 206 16 183 2.12e-48 163
Msa0252840 AT3G15500.1 50.581 172 65 4 24 193 16 169 4.73e-48 163
Msa0252840 AT5G08790.1 40.000 220 108 7 25 239 10 210 9.66e-47 159
Msa0252840 AT1G71930.2 36.823 277 132 9 24 285 11 259 1.26e-46 159
Msa0252840 AT1G71930.1 36.823 277 132 9 24 285 11 259 1.26e-46 159
Msa0252840 AT5G63790.1 47.368 171 78 5 25 195 53 211 1.30e-46 159
Msa0252840 AT5G63790.2 47.368 171 78 5 25 195 63 221 1.49e-46 159
Msa0252840 AT1G12260.2 44.886 176 77 4 21 194 7 164 3.09e-46 159
Msa0252840 AT1G12260.1 44.886 176 77 4 21 194 7 164 4.23e-46 160
Msa0252840 AT5G61430.1 45.556 180 82 5 16 195 11 174 7.03e-46 158
Msa0252840 AT2G43000.2 72.897 107 15 3 85 191 2 94 8.56e-46 154
Msa0252840 AT5G62380.2 44.643 168 74 3 24 189 9 159 1.32e-45 157
Msa0252840 AT5G62380.1 44.643 168 74 3 24 189 9 159 1.32e-45 157
Msa0252840 AT5G07680.1 45.506 178 80 5 16 192 12 173 1.68e-45 157
Msa0252840 AT4G27410.3 43.500 200 81 6 24 206 16 200 2.26e-45 156
Msa0252840 AT4G36160.1 45.402 174 75 4 15 186 4 159 3.57e-45 157
Msa0252840 AT4G36160.3 45.402 174 75 4 15 186 4 159 3.57e-45 157
Msa0252840 AT4G36160.2 45.402 174 75 4 15 186 8 163 3.69e-45 157
Msa0252840 AT1G77450.1 49.123 171 72 7 24 193 12 168 4.19e-45 154
Msa0252840 AT5G13180.1 46.023 176 77 3 9 184 1 158 4.54e-45 153
Msa0252840 AT5G39610.1 44.444 180 85 4 14 192 11 176 6.98e-45 154
Msa0252840 AT5G07680.2 45.977 174 77 5 20 192 2 159 7.29e-45 155
Msa0252840 AT2G17040.1 32.609 276 162 4 20 289 4 261 7.68e-45 154
Msa0252840 AT3G04060.1 45.503 189 82 6 20 202 19 192 8.56e-45 155
Msa0252840 AT5G18270.1 47.337 169 73 5 20 187 20 173 5.61e-44 153
Msa0252840 AT2G18060.3 44.444 171 75 4 21 189 9 161 6.12e-44 154
Msa0252840 AT2G18060.1 44.444 171 75 4 21 189 9 161 6.12e-44 154
Msa0252840 AT1G62700.1 45.029 171 74 4 21 189 7 159 8.43e-44 154
Msa0252840 AT1G62700.2 45.029 171 74 4 21 189 7 159 8.43e-44 154
Msa0252840 AT1G52880.1 51.220 164 76 3 26 189 21 180 1.05e-43 152
Msa0252840 AT3G17730.1 44.848 165 75 3 24 187 8 157 1.83e-43 149
Msa0252840 AT5G18270.2 46.746 169 74 5 20 187 20 173 1.96e-43 152
Msa0252840 AT3G03200.1 40.777 206 106 5 24 227 8 199 2.51e-43 154
Msa0252840 AT2G46770.1 42.778 180 86 5 15 186 10 180 2.92e-43 152
Msa0252840 AT3G29035.1 49.682 157 71 4 15 169 16 166 3.33e-43 150
Msa0252840 AT1G65910.1 43.229 192 80 5 24 213 8 172 3.94e-43 156
Msa0252840 AT2G33480.1 46.988 166 69 4 24 189 17 163 5.44e-43 149
Msa0252840 AT3G18400.1 44.000 175 80 5 18 192 2 158 5.66e-43 150
Msa0252840 AT3G61910.1 42.373 177 93 4 15 187 5 176 7.82e-43 150
Msa0252840 AT2G33480.2 46.988 166 67 4 24 189 17 161 1.11e-42 147
Msa0252840 AT3G12977.1 39.815 216 96 7 24 239 20 201 2.17e-42 147
Msa0252840 AT5G17260.1 40.500 200 101 5 24 222 8 190 3.18e-42 151
Msa0252840 AT1G76420.1 43.429 175 81 5 24 197 24 181 4.87e-42 148
Msa0252840 AT2G24430.2 43.575 179 83 6 17 194 12 173 6.18e-42 147
Msa0252840 AT2G24430.1 43.575 179 83 6 17 194 12 173 6.18e-42 147
Msa0252840 AT5G66300.1 42.614 176 80 5 24 194 14 173 7.50e-42 146
Msa0252840 AT1G54330.1 44.318 176 75 4 24 198 8 161 1.12e-41 146
Msa0252840 AT1G32510.1 40.838 191 99 4 24 210 8 188 2.44e-41 145
Msa0252840 AT3G15170.1 43.503 177 87 4 17 192 15 179 6.13e-41 144
Msa0252840 AT3G10500.1 44.253 174 81 4 24 196 11 169 9.21e-41 149
Msa0252840 AT1G79580.3 41.818 165 77 4 24 186 19 166 1.45e-40 145
Msa0252840 AT1G79580.5 41.818 165 77 4 24 186 19 166 1.45e-40 145
Msa0252840 AT1G79580.4 41.818 165 77 4 24 186 19 166 1.45e-40 145
Msa0252840 AT1G79580.2 41.818 165 77 4 24 186 19 166 1.45e-40 145
Msa0252840 AT1G79580.1 41.818 165 77 4 24 186 19 166 1.45e-40 145
Msa0252840 AT5G46590.2 49.231 130 62 2 24 152 8 134 2.56e-40 142
Msa0252840 AT5G46590.1 49.231 130 62 2 24 152 8 134 4.05e-40 142
Msa0252840 AT4G17980.1 44.242 165 80 4 24 187 8 161 8.21e-40 140
Msa0252840 AT1G32770.1 40.556 180 93 5 24 197 18 189 1.12e-39 142
Msa0252840 AT4G17980.2 44.242 165 80 4 24 187 8 161 1.46e-39 140
Msa0252840 AT5G04410.1 45.882 170 76 5 24 192 11 165 2.03e-39 145
Msa0252840 AT4G10350.1 42.105 171 80 5 21 188 9 163 2.49e-39 141
Msa0252840 AT3G10480.2 43.030 165 78 4 24 187 29 178 3.07e-39 143
Msa0252840 AT1G56010.2 43.976 166 79 4 24 188 21 173 3.91e-39 140
Msa0252840 AT3G10480.1 43.030 165 79 4 24 187 29 179 3.95e-39 142
Msa0252840 AT2G27300.1 40.940 149 84 1 23 171 15 159 1.31e-38 139
Msa0252840 AT1G33280.1 42.424 165 75 4 24 186 10 156 3.98e-38 137
Msa0252840 AT3G10490.1 41.212 165 82 5 24 187 29 179 1.77e-37 133
Msa0252840 AT1G34190.1 49.231 130 61 2 24 152 18 143 2.36e-37 139
Msa0252840 AT3G44290.2 42.188 128 70 1 23 150 15 138 2.39e-37 132
Msa0252840 AT4G35580.1 49.645 141 64 4 19 158 7 141 6.21e-37 138
Msa0252840 AT5G53950.1 51.938 129 59 2 24 152 19 144 6.48e-37 135
Msa0252840 AT4G35580.2 49.645 141 64 4 19 158 7 141 7.23e-37 138
Msa0252840 AT1G34180.3 49.231 130 61 2 24 152 18 143 7.62e-37 137
Msa0252840 AT4G35580.3 49.645 141 64 4 19 158 7 141 7.83e-37 138
Msa0252840 AT5G22290.1 42.969 128 69 1 23 150 22 145 1.14e-36 134
Msa0252840 AT3G10490.2 41.212 165 82 5 24 187 29 179 1.30e-36 136
Msa0252840 AT3G44290.1 42.188 128 70 1 23 150 15 138 1.70e-36 133
Msa0252840 AT1G34180.1 49.231 130 61 2 24 152 18 143 2.40e-36 137
Msa0252840 AT1G33060.1 45.833 144 72 3 9 151 12 150 4.63e-36 137
Msa0252840 AT1G33060.2 45.833 144 72 3 9 151 12 150 4.77e-36 137
Msa0252840 AT5G09330.5 38.788 165 85 3 24 187 8 157 6.54e-36 135
Msa0252840 AT5G09330.2 38.788 165 85 3 24 187 8 157 6.54e-36 135
Msa0252840 AT5G09330.4 38.788 165 85 3 24 187 8 157 6.54e-36 135
Msa0252840 AT5G09330.3 38.788 165 85 3 24 187 8 157 6.54e-36 135
Msa0252840 AT5G09330.1 38.788 165 85 3 24 187 8 157 6.54e-36 135
Msa0252840 AT5G64060.1 32.710 214 128 3 24 236 8 206 4.70e-35 130
Msa0252840 AT1G34180.4 45.070 142 61 2 24 152 18 155 5.46e-35 132
Msa0252840 AT1G34180.2 45.070 142 61 2 24 152 18 155 1.39e-34 132
Msa0252840 AT3G10480.3 37.374 198 76 5 24 187 29 212 9.23e-34 129
Msa0252840 AT5G24590.2 49.618 131 61 3 23 151 13 140 1.46e-33 128
Msa0252840 AT3G49530.2 46.269 134 67 4 19 151 11 140 4.03e-33 126
Msa0252840 AT3G49530.1 46.269 134 67 4 19 151 11 140 1.57e-32 125
Msa0252840 AT5G04395.1 40.426 141 71 2 24 152 30 169 8.95e-31 114
Msa0252840 AT4G28530.1 40.000 180 72 6 24 186 12 172 6.31e-30 116
Msa0252840 AT5G61430.2 46.281 121 51 3 75 195 5 111 6.86e-28 109
Msa0252840 AT5G64530.1 34.091 176 90 6 24 192 5 161 7.01e-28 107
Msa0252840 AT5G22380.1 31.169 231 129 8 19 235 3 217 1.23e-27 107
Msa0252840 AT3G12977.2 40.000 170 67 7 70 239 14 148 1.29e-27 107
Msa0252840 AT1G32870.2 46.923 130 62 3 24 152 12 135 2.28e-27 111
Msa0252840 AT1G32870.1 46.923 130 62 3 24 152 12 135 2.65e-27 111
Msa0252840 AT1G32870.3 46.923 130 62 3 24 152 48 171 3.45e-27 111
Msa0252840 AT3G44350.2 37.356 174 86 7 25 191 8 165 2.12e-26 104
Msa0252840 AT3G44350.1 41.259 143 71 5 25 160 8 144 2.34e-26 102
Msa0252840 AT5G64530.2 40.000 130 63 4 24 153 5 119 3.16e-26 101
Msa0252840 AT4G01550.1 40.909 132 75 3 23 152 5 135 6.67e-24 101
Msa0252840 AT4G01540.4 42.105 133 73 4 23 152 5 136 1.11e-23 100
Msa0252840 AT4G01540.2 42.105 133 73 4 23 152 5 136 1.57e-23 100
Msa0252840 AT4G01540.3 42.105 133 73 4 23 152 5 136 1.87e-23 99.8
Msa0252840 AT4G01520.1 40.458 131 74 4 25 152 7 136 1.89e-23 97.8
Msa0252840 AT4G01540.1 42.105 133 73 4 23 152 5 136 2.16e-23 100
Msa0252840 AT1G56010.1 42.857 119 54 3 70 188 2 106 3.53e-23 96.3
Msa0252840 AT2G33480.3 43.478 115 50 3 75 189 7 106 6.78e-22 91.7
Msa0252840 AT1G02230.1 39.850 133 73 5 25 154 6 134 2.91e-20 90.1
Msa0252840 AT4G10350.2 41.228 114 51 3 76 188 18 116 3.24e-20 89.0
Msa0252840 AT1G02250.1 40.310 129 70 5 25 150 6 130 5.96e-20 89.4
Msa0252840 AT3G04420.2 37.984 129 73 4 25 150 6 130 3.64e-19 85.9
Msa0252840 AT3G04420.1 37.984 129 73 4 25 150 6 130 1.12e-18 85.5
Msa0252840 AT4G28530.2 42.991 107 42 3 24 113 12 116 2.06e-17 81.3
Msa0252840 AT5G50820.1 35.556 135 72 5 24 155 19 141 2.36e-17 79.0
Msa0252840 AT5G14000.2 29.375 160 103 4 9 166 3 154 3.59e-17 77.4
Msa0252840 AT5G14000.1 29.560 159 102 4 9 165 3 153 3.59e-16 75.9
Msa0252840 AT1G02220.1 36.434 129 72 5 25 150 6 127 7.79e-15 74.7
Msa0252840 AT2G18060.2 39.326 89 37 2 101 189 2 73 7.82e-15 73.6
Msa0252840 AT1G01010.1 35.220 159 87 8 25 170 6 161 1.08e-14 74.3
Msa0252840 AT3G56530.1 30.882 136 88 2 24 157 54 185 1.42e-13 70.5

Find 46 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGTTATCATTTGATAAT+TGG 0.118959 2_2:+44461368 Msa0252840:CDS
TAACACCATCACCAAATATT+TGG 0.162351 2_2:+44461326 Msa0252840:CDS
TCTATGGCATGCAGGAAATT+TGG 0.174862 2_2:+44461053 Msa0252840:intron
CAACAAACATATATAAATTT+TGG 0.178717 2_2:+44461211 Msa0252840:CDS
TCCTGCTTAATCCAAATATT+TGG 0.198103 2_2:-44461337 None:intergenic
GAGTCACTGGGTCTGGATTT+TGG 0.213679 2_2:+44459896 Msa0252840:CDS
CTCCATATTGTTGTTCATTC+TGG 0.222827 2_2:-44461176 None:intergenic
CCAGACCCAGTGACTCTATT+TGG 0.319659 2_2:-44459889 None:intergenic
GATGATGATGTTCCACTTCC+TGG 0.332433 2_2:+44458885 Msa0252840:CDS
ATGCATCATCCAATCAGTTT+TGG 0.361511 2_2:-44460028 None:intergenic
TTGATAAGATCAATAGCAAT+AGG 0.382635 2_2:-44458975 None:intergenic
GTTGTTATCATTTGATAATT+GGG 0.385673 2_2:+44461369 Msa0252840:CDS
CCAAATAGAGTCACTGGGTC+TGG 0.392963 2_2:+44459889 Msa0252840:CDS
CACCAGAATGAACAACAATA+TGG 0.411184 2_2:+44461174 Msa0252840:CDS
CATGAATGTGATGATGTTCA+TGG 0.422886 2_2:-44461240 None:intergenic
GCCAAAGAGGGAGAAAATAT+AGG 0.423088 2_2:+44459854 Msa0252840:CDS
ATATCTACAAATATGATCCT+TGG 0.441210 2_2:+44459006 Msa0252840:CDS
ACCAAATATTTGGATTAAGC+AGG 0.451212 2_2:+44461336 Msa0252840:CDS
AATTATACTATTTACAAACT+AGG 0.458098 2_2:-44461430 None:intergenic
TTTGATAATTGGGATGAGCT+TGG 0.467447 2_2:+44461379 Msa0252840:CDS
GACAAAGCAATATACTCAAA+TGG 0.469362 2_2:+44459934 Msa0252840:CDS
GTTTACTACCGTGGTAGTGC+TGG 0.483590 2_2:+44459997 Msa0252840:CDS
TATCTACAAATATGATCCTT+GGG 0.485955 2_2:+44459007 Msa0252840:CDS
GTTAGACCAAATAGAGTCAC+TGG 0.491150 2_2:+44459883 Msa0252840:CDS
GAAAAGGTACCAAAACTGAT+TGG 0.493324 2_2:+44460019 Msa0252840:CDS
AAATGTAGCTGGAGCAGAGA+AGG 0.513323 2_2:+44459816 Msa0252840:CDS
TACCGTGGTAGTGCTGGAAA+AGG 0.520218 2_2:+44460003 Msa0252840:CDS
TATGCAGAAGCAAATGTAGC+TGG 0.529620 2_2:+44459805 Msa0252840:intron
ATATACTCAAATGGAGGAGA+AGG 0.533042 2_2:+44459943 Msa0252840:CDS
AGTAACAAGTTCTTCATCTG+TGG 0.539958 2_2:-44458922 None:intergenic
GTGGGATGGAAACGAAATCC+AGG 0.546047 2_2:-44458903 None:intergenic
TGGAAACGAAATCCAGGAAG+TGG 0.549087 2_2:-44458897 None:intergenic
CAAGTTCTTCATCTGTGGGA+TGG 0.558116 2_2:-44458917 None:intergenic
GTAACAAGTTCTTCATCTGT+GGG 0.558116 2_2:-44458921 None:intergenic
GGAGAAGGAAATGATTGTGT+TGG 0.583944 2_2:+44459958 Msa0252840:CDS
ATCAGCATCATTCTTAGCAT+AGG 0.603706 2_2:-44460094 None:intergenic
AAAACACTTGTTTACTACCG+TGG 0.605694 2_2:+44459988 Msa0252840:CDS
AGAGAAGATGGGTATGAACG+AGG 0.606606 2_2:+44458827 None:intergenic
GACATACTTGGAAGATCCCA+AGG 0.612731 2_2:-44459023 None:intergenic
TTAATCCAAATATTTGGTGA+TGG 0.619082 2_2:-44461331 None:intergenic
ATGAGCTTGGATCAGTTGTG+AGG 0.626748 2_2:+44461392 Msa0252840:CDS
AAAGCAATATACTCAAATGG+AGG 0.648134 2_2:+44459937 Msa0252840:CDS
TCAAAAGAAATGTATCACAA+AGG 0.663587 2_2:+44461092 Msa0252840:CDS
TTAGACCAAATAGAGTCACT+GGG 0.677648 2_2:+44459884 Msa0252840:CDS
TATGAACGAGGATTTCAACA+TGG 0.688452 2_2:+44458839 Msa0252840:CDS
TGAACATCATCACATTCATG+AGG 0.690719 2_2:+44461243 Msa0252840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTGTAAAAATTATGT+AGG - chr2_2:44460239-44460258 None:intergenic 10.0%
!! TAAAATAATTAAGGATTAAA+GGG - chr2_2:44460595-44460614 None:intergenic 10.0%
!! ATAAAATAATTAAGGATTAA+AGG - chr2_2:44460596-44460615 None:intergenic 10.0%
!!! ATTATTTTATTATTTTCTCT+TGG + chr2_2:44460606-44460625 Msa0252840:intron 10.0%
!! TTAGTTATAACAATATTCAA+GGG + chr2_2:44459276-44459295 Msa0252840:intron 15.0%
!! TTAATAGGAAAAAGTTATAT+TGG + chr2_2:44459409-44459428 Msa0252840:intron 15.0%
!!! TGGTTATGAAAATTTTAAAA+TGG + chr2_2:44459429-44459448 Msa0252840:intron 15.0%
!! ATAATGAAAAGGAAAAATAA+AGG - chr2_2:44459752-44459771 None:intergenic 15.0%
!!! TTATTTTTCCTTTTCATTAT+AGG + chr2_2:44459752-44459771 Msa0252840:intron 15.0%
!!! TTTTTACAAATTTTGTACAT+AGG + chr2_2:44460245-44460264 Msa0252840:intron 15.0%
!!! CAACAAACATATATAAATTT+TGG + chr2_2:44461211-44461230 Msa0252840:CDS 15.0%
!! ATCAATTGAAAATATTGTCT+GGG - chr2_2:44459239-44459258 None:intergenic 20.0%
!! AATCAATTGAAAATATTGTC+TGG - chr2_2:44459240-44459259 None:intergenic 20.0%
!! CTTGAATATTGTTATAACTA+AGG - chr2_2:44459277-44459296 None:intergenic 20.0%
!! CTTAGTTATAACAATATTCA+AGG + chr2_2:44459275-44459294 Msa0252840:intron 20.0%
!! AAAAAAAAAAATCACTTCAG+AGG - chr2_2:44459322-44459341 None:intergenic 20.0%
!!! TGATTTTTTTTTTTACTGCT+GGG + chr2_2:44459328-44459347 Msa0252840:intron 20.0%
!!! ACAATACTTGATTTCTAAAA+AGG - chr2_2:44459384-44459403 None:intergenic 20.0%
!!! AATATTTTTCAGTGTAATTG+AGG - chr2_2:44459680-44459699 None:intergenic 20.0%
!! ATATATAGAGAGAATTAAGT+GGG - chr2_2:44459707-44459726 None:intergenic 20.0%
!! TATATATAGAGAGAATTAAG+TGG - chr2_2:44459708-44459727 None:intergenic 20.0%
!! TATAGTTACCTATAATGAAA+AGG - chr2_2:44459763-44459782 None:intergenic 20.0%
!! TACATACAATAAAAGTTTGA+TGG - chr2_2:44460154-44460173 None:intergenic 20.0%
!!! GTATGTATAAATGTTGATTT+TGG + chr2_2:44460167-44460186 Msa0252840:intron 20.0%
!! ATTCTCAATCTTATAAAAAC+CGG - chr2_2:44460442-44460461 None:intergenic 20.0%
!! CTCATTCTATCTATAAATTT+GGG - chr2_2:44460468-44460487 None:intergenic 20.0%
!! TCTCATTCTATCTATAAATT+TGG - chr2_2:44460469-44460488 None:intergenic 20.0%
!! AAATTTATAGATAGAATGAG+AGG + chr2_2:44460468-44460487 Msa0252840:intron 20.0%
!!! ATAAGCAAGAGTATTATTAA+TGG + chr2_2:44460928-44460947 Msa0252840:intron 20.0%
!!! TAAGCAAGAGTATTATTAAT+GGG + chr2_2:44460929-44460948 Msa0252840:intron 20.0%
!!! AGTTGTTATCATTTGATAAT+TGG + chr2_2:44461368-44461387 Msa0252840:CDS 20.0%
!!! GTTGTTATCATTTGATAATT+GGG + chr2_2:44461369-44461388 Msa0252840:CDS 20.0%
! TTGATAAGATCAATAGCAAT+AGG - chr2_2:44458978-44458997 None:intergenic 25.0%
! ATATCTACAAATATGATCCT+TGG + chr2_2:44459006-44459025 Msa0252840:CDS 25.0%
! TATCTACAAATATGATCCTT+GGG + chr2_2:44459007-44459026 Msa0252840:CDS 25.0%
! TTCTAAATGCACAAACTATA+AGG + chr2_2:44459176-44459195 Msa0252840:intron 25.0%
!!! GTGATTTTTTTTTTTACTGC+TGG + chr2_2:44459327-44459346 Msa0252840:intron 25.0%
!!! GATTTTTTTTTTTACTGCTG+GGG + chr2_2:44459329-44459348 Msa0252840:intron 25.0%
!!! TGATCATGATTTTCAAGAAT+TGG + chr2_2:44459355-44459374 Msa0252840:intron 25.0%
!! CAAGTATTGTGACAATTAAT+AGG + chr2_2:44459394-44459413 Msa0252840:intron 25.0%
!!! AATGTTTGTTTTGACATCAA+TGG - chr2_2:44460073-44460092 None:intergenic 25.0%
! ATACAATAAAAGTTTGATGG+TGG - chr2_2:44460151-44460170 None:intergenic 25.0%
!!! TCACATTTTTCACTTTTTCT+TGG + chr2_2:44460316-44460335 Msa0252840:intron 25.0%
!!! CACATTTTTCACTTTTTCTT+GGG + chr2_2:44460317-44460336 Msa0252840:intron 25.0%
! TATAAAAACCGGCTAATAAA+AGG - chr2_2:44460431-44460450 None:intergenic 25.0%
!! ACTTTAGATTAGTTAATGTG+AGG + chr2_2:44460518-44460537 Msa0252840:intron 25.0%
!! CTTTAGATTAGTTAATGTGA+GGG + chr2_2:44460519-44460538 Msa0252840:intron 25.0%
!!! AAGCAAGAGTATTATTAATG+GGG + chr2_2:44460930-44460949 Msa0252840:intron 25.0%
! TATTATTAATGGGGATTACA+AGG + chr2_2:44460939-44460958 Msa0252840:intron 25.0%
! ATTATTAATGGGGATTACAA+GGG + chr2_2:44460940-44460959 Msa0252840:intron 25.0%
! TCAAAAGAAATGTATCACAA+AGG + chr2_2:44461092-44461111 Msa0252840:CDS 25.0%
!!! TTAGCTAATTGTTTTATCTG+CGG - chr2_2:44461127-44461146 None:intergenic 25.0%
!! TTAATCCAAATATTTGGTGA+TGG - chr2_2:44461334-44461353 None:intergenic 25.0%
GCACAAACTATAAGGAAAAA+TGG + chr2_2:44459184-44459203 Msa0252840:intron 30.0%
!! AATTCTTCCTTTGTTTCTGA+TGG - chr2_2:44459529-44459548 None:intergenic 30.0%
!!! TGTTACTTTTTTTGCCAAAG+AGG + chr2_2:44459841-44459860 Msa0252840:CDS 30.0%
!!! GTTACTTTTTTTGCCAAAGA+GGG + chr2_2:44459842-44459861 Msa0252840:CDS 30.0%
GACAAAGCAATATACTCAAA+TGG + chr2_2:44459934-44459953 Msa0252840:CDS 30.0%
AAAGCAATATACTCAAATGG+AGG + chr2_2:44459937-44459956 Msa0252840:CDS 30.0%
TAGGTTAATTCTTACACACA+TGG + chr2_2:44460264-44460283 Msa0252840:intron 30.0%
!! TGTTTCAAGTTGATCGTAAT+GGG - chr2_2:44460975-44460994 None:intergenic 30.0%
!! ATGTTTCAAGTTGATCGTAA+TGG - chr2_2:44460976-44460995 None:intergenic 30.0%
! GTCCTAATGATTTTTGTCTA+TGG + chr2_2:44461037-44461056 Msa0252840:intron 30.0%
TGCCATAGACAAAAATCATT+AGG - chr2_2:44461042-44461061 None:intergenic 30.0%
TAACACCATCACCAAATATT+TGG + chr2_2:44461326-44461345 Msa0252840:CDS 30.0%
ACCAAATATTTGGATTAAGC+AGG + chr2_2:44461336-44461355 Msa0252840:CDS 30.0%
TCCTGCTTAATCCAAATATT+TGG - chr2_2:44461340-44461359 None:intergenic 30.0%
TATGAACGAGGATTTCAACA+TGG + chr2_2:44458839-44458858 Msa0252840:CDS 35.0%
GTAACAAGTTCTTCATCTGT+GGG - chr2_2:44458924-44458943 None:intergenic 35.0%
AGTAACAAGTTCTTCATCTG+TGG - chr2_2:44458925-44458944 None:intergenic 35.0%
TAGTTAGATGACGACATACT+TGG - chr2_2:44459038-44459057 None:intergenic 35.0%
AAGAAGAAATCCCTATCGAA+AGG + chr2_2:44459150-44459169 Msa0252840:intron 35.0%
AGAAGAAATCCCTATCGAAA+GGG + chr2_2:44459151-44459170 Msa0252840:intron 35.0%
TTTAGAAACCCCTTTCGATA+GGG - chr2_2:44459163-44459182 None:intergenic 35.0%
ATTTAGAAACCCCTTTCGAT+AGG - chr2_2:44459164-44459183 None:intergenic 35.0%
! TCCTATATTTTCTCCCTCTT+TGG - chr2_2:44459858-44459877 None:intergenic 35.0%
TTAGACCAAATAGAGTCACT+GGG + chr2_2:44459884-44459903 Msa0252840:CDS 35.0%
ATATACTCAAATGGAGGAGA+AGG + chr2_2:44459943-44459962 Msa0252840:CDS 35.0%
AAAACACTTGTTTACTACCG+TGG + chr2_2:44459988-44460007 Msa0252840:CDS 35.0%
!! GAAAAGGTACCAAAACTGAT+TGG + chr2_2:44460019-44460038 Msa0252840:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG - chr2_2:44460031-44460050 None:intergenic 35.0%
!! GTTTTGACATCAATGGTTGA+TGG - chr2_2:44460066-44460085 None:intergenic 35.0%
ATCAGCATCATTCTTAGCAT+AGG - chr2_2:44460097-44460116 None:intergenic 35.0%
GAAATGTTAATGAGTGCCTT+CGG - chr2_2:44460900-44460919 None:intergenic 35.0%
CACCAGAATGAACAACAATA+TGG + chr2_2:44461174-44461193 Msa0252840:CDS 35.0%
! CTCCATATTGTTGTTCATTC+TGG - chr2_2:44461179-44461198 None:intergenic 35.0%
! CATGAATGTGATGATGTTCA+TGG - chr2_2:44461243-44461262 None:intergenic 35.0%
TGAACATCATCACATTCATG+AGG + chr2_2:44461243-44461262 Msa0252840:CDS 35.0%
! TTTGATAATTGGGATGAGCT+TGG + chr2_2:44461379-44461398 Msa0252840:CDS 35.0%
GAAGAAATCCCTATCGAAAG+GGG + chr2_2:44459152-44459171 Msa0252840:intron 40.0%
TCTGGGCATGCAAATATTGT+CGG - chr2_2:44459222-44459241 None:intergenic 40.0%
TATGCAGAAGCAAATGTAGC+TGG + chr2_2:44459805-44459824 Msa0252840:intron 40.0%
GCCAAAGAGGGAGAAAATAT+AGG + chr2_2:44459854-44459873 Msa0252840:CDS 40.0%
GTTAGACCAAATAGAGTCAC+TGG + chr2_2:44459883-44459902 Msa0252840:CDS 40.0%
!! TCTGGATTTTGGAAAGCAAC+TGG + chr2_2:44459907-44459926 Msa0252840:CDS 40.0%
GGAGAAGGAAATGATTGTGT+TGG + chr2_2:44459958-44459977 Msa0252840:CDS 40.0%
! TTACCTCGCCTTTTATTAGC+CGG + chr2_2:44460420-44460439 Msa0252840:intron 40.0%
!! TCAAGTTGATCGTAATGGGT+TGG - chr2_2:44460971-44460990 None:intergenic 40.0%
! GATTTTTGTCTATGGCATGC+AGG + chr2_2:44461045-44461064 Msa0252840:intron 40.0%
TCTATGGCATGCAGGAAATT+TGG + chr2_2:44461053-44461072 Msa0252840:intron 40.0%
! GATGATGATGTTCCACTTCC+TGG + chr2_2:44458885-44458904 Msa0252840:CDS 45.0%
TGGAAACGAAATCCAGGAAG+TGG - chr2_2:44458900-44458919 None:intergenic 45.0%
CAAGTTCTTCATCTGTGGGA+TGG - chr2_2:44458920-44458939 None:intergenic 45.0%
GACATACTTGGAAGATCCCA+AGG - chr2_2:44459026-44459045 None:intergenic 45.0%
TGAGCAGCCATCAGAAACAA+AGG + chr2_2:44459519-44459538 Msa0252840:intron 45.0%
AAATGTAGCTGGAGCAGAGA+AGG + chr2_2:44459816-44459835 Msa0252840:CDS 45.0%
! TACCTTTTCCAGCACTACCA+CGG - chr2_2:44460008-44460027 None:intergenic 45.0%
AAACCGGCTAATAAAAGGCG+AGG - chr2_2:44460426-44460445 None:intergenic 45.0%
CACCTGCTATCGAACTACTA+GGG + chr2_2:44460491-44460510 Msa0252840:intron 45.0%
AACCCTAGTAGTTCGATAGC+AGG - chr2_2:44460496-44460515 None:intergenic 45.0%
ATGAGCTTGGATCAGTTGTG+AGG + chr2_2:44461392-44461411 Msa0252840:CDS 45.0%
!! AGAAAATAATAAAATAATTA+AGG - chr2_2:44460604-44460623 None:intergenic 5.0%
!! ATAAAAAATTTACTAATTAA+AGG + chr2_2:44460860-44460879 Msa0252840:intron 5.0%
!! TAAAAAATTTACTAATTAAA+GGG + chr2_2:44460861-44460880 Msa0252840:intron 5.0%
GTGGGATGGAAACGAAATCC+AGG - chr2_2:44458906-44458925 None:intergenic 50.0%
CCAGACCCAGTGACTCTATT+TGG - chr2_2:44459892-44459911 None:intergenic 50.0%
CCAAATAGAGTCACTGGGTC+TGG + chr2_2:44459889-44459908 Msa0252840:CDS 50.0%
! GAGTCACTGGGTCTGGATTT+TGG + chr2_2:44459896-44459915 Msa0252840:CDS 50.0%
! GTTTACTACCGTGGTAGTGC+TGG + chr2_2:44459997-44460016 Msa0252840:CDS 50.0%
! TACCGTGGTAGTGCTGGAAA+AGG + chr2_2:44460003-44460022 Msa0252840:CDS 50.0%
GCACCTGCTATCGAACTACT+AGG + chr2_2:44460490-44460509 Msa0252840:intron 50.0%
! GGGCTTAAAGAGTGCACCGA+AGG + chr2_2:44460881-44460900 Msa0252840:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 44458834 44461441 44458834 ID=Msa0252840;Name=Msa0252840
chr2_2 mRNA 44458834 44461441 44458834 ID=Msa0252840-mRNA-1;Parent=Msa0252840;Name=Msa0252840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|299
chr2_2 exon 44458834 44459038 44458834 ID=Msa0252840-mRNA-1:exon:13634;Parent=Msa0252840-mRNA-1
chr2_2 exon 44459812 44460131 44459812 ID=Msa0252840-mRNA-1:exon:13635;Parent=Msa0252840-mRNA-1
chr2_2 exon 44461067 44461441 44461067 ID=Msa0252840-mRNA-1:exon:13636;Parent=Msa0252840-mRNA-1
chr2_2 CDS 44458834 44459038 44458834 ID=Msa0252840-mRNA-1:cds;Parent=Msa0252840-mRNA-1
chr2_2 CDS 44459812 44460131 44459812 ID=Msa0252840-mRNA-1:cds;Parent=Msa0252840-mRNA-1
chr2_2 CDS 44461067 44461441 44461067 ID=Msa0252840-mRNA-1:cds;Parent=Msa0252840-mRNA-1
Gene Sequence

>Msa0252840

ATGGGTATGAACGAGGATTTCAACATGGATAATGAATATGTTGTAGATGATGATGATGATGTTCCACTTCCTGGATTTCGTTTCCATCCCACAGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTTATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAATGTAGCTGGAGCAGAGAAGGAATGTTACTTTTTTTGCCAAAGAGGGAGAAAATATAGGAACAGCGTTAGACCAAATAGAGTCACTGGGTCTGGATTTTGGAAAGCAACTGGAATAGACAAAGCAATATACTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTACTACCGTGGTAGTGCTGGAAAAGGTACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAACCATTGATGTCAAAACAAACATTTCCTATGCTAAGAATGATGCTGATTATGCTCATGAAGCTGAAATTTGGACATTGTGTAGAATTCTCAAAAGAAATGTATCACAAAGGAAACAAATACCGCAGATAAAACAATTAGCTAACAAGCATCAAGTCAGTCATAACACGAGCACCAGAATGAACAACAATATGGAGTTCAACATAAATCAACAAACATATATAAATTTTGGTGCAAGCCATGAACATCATCACATTCATGAGGACAAATCAATCAATAACTATACAAGCAGTGAAAAAAGCAATCAGTTTCATGCAAACAATGTAACACCATCACCAAATATTTGGATTAAGCAGGATGCTAATGAGTTGTTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAGGTTTGCTGTTGATTCACCTAGTTTGTAA
Protein sequence

>Msa0252840

MGMNEDFNMDNEYVVDDDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKANVAGAEKECYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSTIDVKTNISYAKNDADYAHEAEIWTLCRILKRNVSQRKQIPQIKQLANKHQVSHNTSTRMNNNMEFNINQQTYINFGASHEHHHIHEDKSINNYTSSEKSNQFHANNVTPSPNIWIKQDANELLSFDNWDELGSVVRFAVDSPSL*