Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292990 | XP_013446173.1 | 98.824 | 510 | 6 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292990 | sp|Q9LPV5|NRT25_ARATH | 74.737 | 475 | 120 | 0 | 17 | 491 | 19 | 493 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292990 | A0A072U314 | 98.824 | 510 | 6 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1292990 | 0.808974 | 2.379290e-50 | -8.615850e-47 |
| Msa0007990 | Msa1292990 | 0.807476 | 4.961876e-50 | -8.615850e-47 |
| Msa0043980 | Msa1292990 | 0.804970 | 1.672912e-49 | -8.615850e-47 |
| Msa0044000 | Msa1292990 | 0.804655 | 1.946704e-49 | -8.615850e-47 |
| Msa0061500 | Msa1292990 | 0.804399 | 2.200778e-49 | -8.615850e-47 |
| Msa0079070 | Msa1292990 | 0.822088 | 2.855756e-53 | -8.615850e-47 |
| Msa0095560 | Msa1292990 | 0.809864 | 1.532735e-50 | -8.615850e-47 |
| Msa0622170 | Msa1292990 | -0.813941 | 1.983329e-51 | -8.615850e-47 |
| Msa0627350 | Msa1292990 | 0.800442 | 1.438208e-48 | -8.615850e-47 |
| Msa0648860 | Msa1292990 | 0.805342 | 1.398385e-49 | -8.615850e-47 |
| Msa0679550 | Msa1292990 | 0.800730 | 1.256508e-48 | -8.615850e-47 |
| Msa0689780 | Msa1292990 | 0.806741 | 7.099553e-50 | -8.615850e-47 |
| Msa0749440 | Msa1292990 | 0.805210 | 1.489769e-49 | -8.615850e-47 |
| Msa0751850 | Msa1292990 | 0.810514 | 1.110081e-50 | -8.615850e-47 |
| Msa0763920 | Msa1292990 | 0.807258 | 5.518609e-50 | -8.615850e-47 |
| Msa0784480 | Msa1292990 | 0.814346 | 1.614697e-51 | -8.615850e-47 |
| Msa0797770 | Msa1292990 | 0.802999 | 4.296232e-49 | -8.615850e-47 |
| Msa0817460 | Msa1292990 | 0.801951 | 7.065405e-49 | -8.615850e-47 |
| Msa0831850 | Msa1292990 | 0.812241 | 4.680189e-51 | -8.615850e-47 |
| Msa0835230 | Msa1292990 | 0.802356 | 5.832134e-49 | -8.615850e-47 |
| Msa0127800 | Msa1292990 | 0.805125 | 1.552098e-49 | -8.615850e-47 |
| Msa0131770 | Msa1292990 | 0.814425 | 1.551055e-51 | -8.615850e-47 |
| Msa0138020 | Msa1292990 | 0.830209 | 3.341286e-55 | -8.615850e-47 |
| Msa0142280 | Msa1292990 | 0.816760 | 4.682473e-52 | -8.615850e-47 |
| Msa0149300 | Msa1292990 | 0.809652 | 1.702221e-50 | -8.615850e-47 |
| Msa0152560 | Msa1292990 | 0.822458 | 2.343621e-53 | -8.615850e-47 |
| Msa0172080 | Msa1292990 | 0.812725 | 3.669734e-51 | -8.615850e-47 |
| Msa0178510 | Msa1292990 | 0.811783 | 5.891445e-51 | -8.615850e-47 |
| Msa0186950 | Msa1292990 | 0.808877 | 2.495997e-50 | -8.615850e-47 |
| Msa0187830 | Msa1292990 | 0.820865 | 5.472369e-53 | -8.615850e-47 |
| Msa0190530 | Msa1292990 | 0.842474 | 2.530195e-58 | -8.615850e-47 |
| Msa0200850 | Msa1292990 | 0.827331 | 1.660055e-54 | -8.615850e-47 |
| Msa0218370 | Msa1292990 | 0.827270 | 1.716712e-54 | -8.615850e-47 |
| Msa0236420 | Msa1292990 | 0.808575 | 2.895212e-50 | -8.615850e-47 |
| Msa1225100 | Msa1292990 | 0.806703 | 7.233673e-50 | -8.615850e-47 |
| Msa1246700 | Msa1292990 | 0.821440 | 4.032704e-53 | -8.615850e-47 |
| Msa1252260 | Msa1292990 | 0.889927 | 1.561203e-73 | -8.615850e-47 |
| Msa1270660 | Msa1292990 | 0.823798 | 1.141057e-53 | -8.615850e-47 |
| Msa1270730 | Msa1292990 | 0.820120 | 8.114144e-53 | -8.615850e-47 |
| Msa1291450 | Msa1292990 | 0.803201 | 3.903852e-49 | -8.615850e-47 |
| Msa1292990 | Msa1295330 | 0.826991 | 2.002067e-54 | -8.615850e-47 |
| Msa1292990 | Msa1304890 | -0.819608 | 1.062139e-52 | -8.615850e-47 |
| Msa1292990 | Msa1305810 | 0.819238 | 1.289569e-52 | -8.615850e-47 |
| Msa1292990 | Msa1328520 | 0.802658 | 5.052928e-49 | -8.615850e-47 |
| Msa1292990 | Msa1329870 | 0.806374 | 8.484119e-50 | -8.615850e-47 |
| Msa1292990 | Msa1335230 | 0.826666 | 2.393794e-54 | -8.615850e-47 |
| Msa1292990 | Msa1338400 | 0.808114 | 3.631549e-50 | -8.615850e-47 |
| Msa1292990 | Msa1343250 | 0.812759 | 3.607155e-51 | -8.615850e-47 |
| Msa1292990 | Msa1355890 | 0.811547 | 6.630083e-51 | -8.615850e-47 |
| Msa1292990 | Msa1365270 | 0.813045 | 3.122431e-51 | -8.615850e-47 |
| Msa1292990 | Msa1371940 | 0.803126 | 4.044236e-49 | -8.615850e-47 |
| Msa1292990 | Msa1372150 | 0.802588 | 5.224541e-49 | -8.615850e-47 |
| Msa1292990 | Msa1376450 | 0.805579 | 1.247008e-49 | -8.615850e-47 |
| Msa1292990 | Msa1378040 | 0.800804 | 1.213574e-48 | -8.615850e-47 |
| Msa1292990 | Msa1384280 | 0.820351 | 7.182180e-53 | -8.615850e-47 |
| Msa1292990 | Msa1394310 | 0.804760 | 1.850658e-49 | -8.615850e-47 |
| Msa1292990 | Msa1394380 | 0.820165 | 7.920671e-53 | -8.615850e-47 |
| Msa1292990 | Msa1420270 | 0.815883 | 7.356812e-52 | -8.615850e-47 |
| Msa1292990 | Msa1423820 | 0.821112 | 4.801152e-53 | -8.615850e-47 |
| Msa1292990 | Msa1435270 | 0.807981 | 3.875980e-50 | -8.615850e-47 |
| Msa1292990 | Msa1454570 | 0.809300 | 2.025217e-50 | -8.615850e-47 |
| Msa1292990 | Msa1466540 | 0.811630 | 6.359296e-51 | -8.615850e-47 |
| Msa0389270 | Msa1292990 | 0.805852 | 1.092659e-49 | -8.615850e-47 |
| Msa0389910 | Msa1292990 | 0.809726 | 1.641298e-50 | -8.615850e-47 |
| Msa0393620 | Msa1292990 | 0.829401 | 5.254262e-55 | -8.615850e-47 |
| Msa0394470 | Msa1292990 | 0.805400 | 1.359513e-49 | -8.615850e-47 |
| Msa0397270 | Msa1292990 | 0.805474 | 1.311757e-49 | -8.615850e-47 |
| Msa0409200 | Msa1292990 | 0.800393 | 1.471840e-48 | -8.615850e-47 |
| Msa0455760 | Msa1292990 | 0.818903 | 1.537103e-52 | -8.615850e-47 |
| Msa0992600 | Msa1292990 | 0.801797 | 7.600536e-49 | -8.615850e-47 |
| Msa0999680 | Msa1292990 | 0.802699 | 4.956432e-49 | -8.615850e-47 |
| Msa1007230 | Msa1292990 | 0.811993 | 5.301680e-51 | -8.615850e-47 |
| Msa1039710 | Msa1292990 | -0.820074 | 8.313537e-53 | -8.615850e-47 |
| Msa1100930 | Msa1292990 | 0.812931 | 3.307339e-51 | -8.615850e-47 |
| Msa0240270 | Msa1292990 | 0.806868 | 6.673249e-50 | -8.615850e-47 |
| Msa0243480 | Msa1292990 | 0.832556 | 8.838413e-56 | -8.615850e-47 |
| Msa0244140 | Msa1292990 | 0.851405 | 9.069498e-61 | -8.615850e-47 |
| Msa0244190 | Msa1292990 | 0.846013 | 2.834623e-59 | -8.615850e-47 |
| Msa0252840 | Msa1292990 | 0.807833 | 4.167803e-50 | -8.615850e-47 |
| Msa0264830 | Msa1292990 | 0.800613 | 1.327372e-48 | -8.615850e-47 |
| Msa0270960 | Msa1292990 | 0.809429 | 1.900258e-50 | -8.615850e-47 |
| Msa0281930 | Msa1292990 | 0.818841 | 1.587596e-52 | -8.615850e-47 |
| Msa0319290 | Msa1292990 | 0.807201 | 5.673822e-50 | -8.615850e-47 |
| Msa0321080 | Msa1292990 | 0.850130 | 2.071260e-60 | -8.615850e-47 |
| Msa0340340 | Msa1292990 | 0.809380 | 1.946755e-50 | -8.615850e-47 |
| Msa0347750 | Msa1292990 | 0.804476 | 2.121241e-49 | -8.615850e-47 |
| Msa0357830 | Msa1292990 | 0.809296 | 2.029356e-50 | -8.615850e-47 |
| Msa0357840 | Msa1292990 | 0.801925 | 7.153255e-49 | -8.615850e-47 |
| Msa0363790 | Msa1292990 | 0.831698 | 1.440169e-55 | -8.615850e-47 |
| Msa1122860 | Msa1292990 | 0.816796 | 4.596598e-52 | -8.615850e-47 |
| Msa1157080 | Msa1292990 | 0.801049 | 1.081417e-48 | -8.615850e-47 |
| Msa1162780 | Msa1292990 | 0.814065 | 1.862624e-51 | -8.615850e-47 |
| Msa1177560 | Msa1292990 | 0.808914 | 2.450493e-50 | -8.615850e-47 |
| Msa1177780 | Msa1292990 | 0.812895 | 3.367291e-51 | -8.615850e-47 |
| Msa1185110 | Msa1292990 | 0.811078 | 8.379486e-51 | -8.615850e-47 |
| Msa1198770 | Msa1292990 | 0.944169 | 3.189438e-103 | -8.615850e-47 |
| Msa1202660 | Msa1292990 | 0.801409 | 9.129206e-49 | -8.615850e-47 |
| Msa1210110 | Msa1292990 | 0.805903 | 1.066304e-49 | -8.615850e-47 |
| Msa1224200 | Msa1292990 | 0.827528 | 1.488880e-54 | -8.615850e-47 |
| Msa0486690 | Msa1292990 | 0.830235 | 3.291967e-55 | -8.615850e-47 |
| Msa0526070 | Msa1292990 | -0.826383 | 2.795740e-54 | -8.615850e-47 |
| Msa0530650 | Msa1292990 | 0.801109 | 1.051394e-48 | -8.615850e-47 |
| Msa0548920 | Msa1292990 | 0.809425 | 1.904145e-50 | -8.615850e-47 |
| Msa0566750 | Msa1292990 | 0.814062 | 1.865128e-51 | -8.615850e-47 |
| Msa0587030 | Msa1292990 | 0.801351 | 9.383164e-49 | -8.615850e-47 |
| Msa0587190 | Msa1292990 | 0.800224 | 1.592987e-48 | -8.615850e-47 |
| Msa0842650 | Msa1292990 | 0.800513 | 1.391643e-48 | -8.615850e-47 |
| Msa0842770 | Msa1292990 | 0.800525 | 1.383740e-48 | -8.615850e-47 |
| Msa0844110 | Msa1292990 | 0.801991 | 6.935080e-49 | -8.615850e-47 |
| Msa0894710 | Msa1292990 | 0.822573 | 2.203517e-53 | -8.615850e-47 |
| Msa0902830 | Msa1292990 | 0.807946 | 3.943096e-50 | -8.615850e-47 |
| Msa0921420 | Msa1292990 | 0.802687 | 4.984410e-49 | -8.615850e-47 |
| Msa0933100 | Msa1292990 | 0.803511 | 3.366520e-49 | -8.615850e-47 |
| Msa0936390 | Msa1292990 | 0.839665 | 1.383519e-57 | -8.615850e-47 |
| Msa0936560 | Msa1292990 | 0.803809 | 2.919327e-49 | -8.615850e-47 |
| Msa0960390 | Msa1292990 | 0.815509 | 8.915251e-52 | -8.615850e-47 |
| Msa0969520 | Msa1292990 | 0.823487 | 1.349016e-53 | -8.615850e-47 |
| Msa0973600 | Msa1292990 | 0.850478 | 1.655021e-60 | -8.615850e-47 |
| Msa0977200 | Msa1292990 | 0.807260 | 5.512672e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292990 | MtrunA17_Chr8g0368421 | 98.824 | 510 | 6 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1028 |
| Msa1292990 | MtrunA17_Chr4g0028551 | 61.585 | 492 | 186 | 2 | 18 | 509 | 38 | 526 | 0.0 | 646 |
| Msa1292990 | MtrunA17_Chr4g0028541 | 61.585 | 492 | 186 | 2 | 18 | 509 | 38 | 526 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292990 | AT1G12940.1 | 74.737 | 475 | 120 | 0 | 17 | 491 | 19 | 493 | 0.0 | 755 |
| Msa1292990 | AT5G60770.1 | 57.227 | 512 | 207 | 4 | 2 | 510 | 25 | 527 | 0.0 | 620 |
| Msa1292990 | AT1G08090.1 | 57.199 | 507 | 211 | 3 | 2 | 506 | 25 | 527 | 0.0 | 618 |
| Msa1292990 | AT1G08100.1 | 57.764 | 483 | 203 | 1 | 14 | 495 | 32 | 514 | 0.0 | 600 |
| Msa1292990 | AT3G45060.1 | 56.783 | 516 | 214 | 3 | 2 | 510 | 29 | 542 | 0.0 | 589 |
| Msa1292990 | AT5G60780.1 | 55.773 | 511 | 224 | 1 | 2 | 510 | 29 | 539 | 0.0 | 586 |
| Msa1292990 | AT5G14570.1 | 49.393 | 494 | 228 | 3 | 5 | 481 | 2 | 490 | 2.59e-170 | 490 |
Find 91 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGTTGCATCTGTTTC+TGG | 0.074073 | 8_3:+49785135 | Msa1292990:CDS |
| TTCCAGCAGTGTGAAGTTTA+AGG | 0.193334 | 8_3:-49786235 | None:intergenic |
| GTAAATTTGTGTATCTTTAT+TGG | 0.193798 | 8_3:+49787880 | Msa1292990:three_prime_UTR |
| TGGTTTATTATCTGATTTAA+TGG | 0.218179 | 8_3:+49786307 | Msa1292990:CDS |
| CTTCTTGTGAGGTTCTTTAC+TGG | 0.225051 | 8_3:+49785291 | Msa1292990:CDS |
| CATGATTGTGTTTCTTTGAT+TGG | 0.235747 | 8_3:-49784869 | None:intergenic |
| GCTGCTTGTGGAATGACTTT+TGG | 0.252766 | 8_3:+49786473 | Msa1292990:CDS |
| TTGGAATGAGGGGTAGATTA+TGG | 0.258780 | 8_3:+49786339 | Msa1292990:CDS |
| GATTTAATGGCTAAGAGATT+TGG | 0.279825 | 8_3:+49786320 | Msa1292990:CDS |
| TTGACTTATGGTTATTGTTT+TGG | 0.287818 | 8_3:+49786158 | Msa1292990:CDS |
| GGAATCATTGCTGCAAGTTT+TGG | 0.302049 | 8_3:+49786254 | Msa1292990:CDS |
| GGTGGGTGGGGTAACCTTGG+TGG | 0.319262 | 8_3:+49785876 | Msa1292990:intron |
| GGAAAATATATTAAGAATAA+TGG | 0.321070 | 8_3:-49787612 | None:intergenic |
| CTTTGATTGGATTGGGCTAT+GGG | 0.349855 | 8_3:-49784856 | None:intergenic |
| TGTTGAGGTTGATTGGTTGA+TGG | 0.356794 | 8_3:-49784910 | None:intergenic |
| TTAAGGTTGTCACGGATTAT+AGG | 0.361381 | 8_3:-49785087 | None:intergenic |
| AGAAAGAGGAATAACTCTAA+TGG | 0.367970 | 8_3:+49787563 | Msa1292990:CDS |
| TGTGTTTCTTTGATTGGATT+GGG | 0.382952 | 8_3:-49784863 | None:intergenic |
| AATGGGAACTGCTTGTGATT+TGG | 0.383228 | 8_3:+49785179 | Msa1292990:CDS |
| AACCTTAAACTTCACACTGC+TGG | 0.383716 | 8_3:+49786233 | Msa1292990:CDS |
| TTGTTGTTGTTGAGGTTGAT+TGG | 0.391111 | 8_3:-49784917 | None:intergenic |
| ATCCTTTGAAGAAAATTAGT+TGG | 0.392329 | 8_3:-49787527 | None:intergenic |
| TATCCGTTGCTGTTAGGTTA+AGG | 0.394367 | 8_3:-49785104 | None:intergenic |
| AACCTAACAGCAACGGATAT+AGG | 0.398418 | 8_3:+49785108 | Msa1292990:CDS |
| TTGTGTTTCTTTGATTGGAT+TGG | 0.398876 | 8_3:-49784864 | None:intergenic |
| GGTTGATTGGTTGATGGTGT+TGG | 0.401312 | 8_3:-49784904 | None:intergenic |
| GAAAGAGGAATAACTCTAAT+GGG | 0.408051 | 8_3:+49787564 | Msa1292990:CDS |
| CATGGTGTGTTAAATTATAG+AGG | 0.409317 | 8_3:+49786122 | Msa1292990:CDS |
| TATCATAGCTTAAAGAAATC+AGG | 0.412558 | 8_3:+49786062 | Msa1292990:CDS |
| TCTTTGATTGGATTGGGCTA+TGG | 0.417793 | 8_3:-49784857 | None:intergenic |
| GTTGATTGGTTGATGGTGTT+GGG | 0.421667 | 8_3:-49784903 | None:intergenic |
| TCTATTATCAATTCTCCTAC+TGG | 0.423158 | 8_3:+49785264 | Msa1292990:CDS |
| TTCCTATATCCGTTGCTGTT+AGG | 0.424382 | 8_3:-49785110 | None:intergenic |
| CACAGAAGAAGATTACTATA+TGG | 0.427355 | 8_3:+49787677 | Msa1292990:CDS |
| TCAGGTGGGTGGGGTAACCT+TGG | 0.436260 | 8_3:+49785873 | Msa1292990:intron |
| GGAAGAGCAAATGGTTTCTC+AGG | 0.441053 | 8_3:+49785381 | Msa1292990:CDS |
| TGCTAGCATTTCATCTATCA+TGG | 0.442197 | 8_3:+49785013 | Msa1292990:CDS |
| GGGTGGGGTAACCTTGGTGG+AGG | 0.446755 | 8_3:+49785879 | Msa1292990:CDS |
| ACTGTTGTTGGAAGAGCAAA+TGG | 0.454937 | 8_3:+49785372 | Msa1292990:CDS |
| TCCTTTGAAGAAAATTAGTT+GGG | 0.459131 | 8_3:-49787526 | None:intergenic |
| AGGTCCTTAGGAGTCATATC+AGG | 0.460197 | 8_3:+49787465 | Msa1292990:intron |
| GGCTAAGAGATTTGGAATGA+GGG | 0.467670 | 8_3:+49786328 | Msa1292990:CDS |
| AAGCTATGATAATTACCATC+TGG | 0.469954 | 8_3:-49786050 | None:intergenic |
| TGGATTTGTCAAACGTTGGC+TGG | 0.472815 | 8_3:+49786368 | Msa1292990:CDS |
| GGGGTAGATTATGGTGTTTG+TGG | 0.475044 | 8_3:+49786348 | Msa1292990:CDS |
| TGGCTAAGAGATTTGGAATG+AGG | 0.480994 | 8_3:+49786327 | Msa1292990:CDS |
| TGCAACAAATTCAGGTCCTT+AGG | 0.486150 | 8_3:+49787453 | Msa1292990:intron |
| ACATACCTTCTTGAGACAAA+AGG | 0.496721 | 8_3:-49786503 | None:intergenic |
| TTCAGCTATGATATTGTCAA+TGG | 0.501509 | 8_3:-49786192 | None:intergenic |
| GATAATAGTAGAAGTGAAAG+AGG | 0.507879 | 8_3:+49787759 | Msa1292990:CDS |
| AAGATTACTATATGGCTGAA+TGG | 0.518793 | 8_3:+49787685 | Msa1292990:CDS |
| AACTCAAAGGAGAGGGAGAA+AGG | 0.520853 | 8_3:+49787708 | Msa1292990:CDS |
| TAAGGTGCATATTATGATCA+TGG | 0.523894 | 8_3:-49787589 | None:intergenic |
| CATTCCTGATATGACTCCTA+AGG | 0.529469 | 8_3:-49787469 | None:intergenic |
| TCAGATAATAAACCACCTCC+TGG | 0.536893 | 8_3:-49786299 | None:intergenic |
| CTGTTAGGTTAAGGTTGTCA+CGG | 0.537447 | 8_3:-49785095 | None:intergenic |
| GGAGTCATATCAGGAATGAC+AGG | 0.542118 | 8_3:+49787474 | Msa1292990:CDS |
| GTGTGTTAAATTATAGAGGG+TGG | 0.543363 | 8_3:+49786126 | Msa1292990:CDS |
| TTTGGTCAAGATTTACCAGA+TGG | 0.543573 | 8_3:+49786035 | Msa1292990:CDS |
| TCAGGAATGACAGGAGGAGG+AGG | 0.547520 | 8_3:+49787483 | Msa1292990:CDS |
| CTGAATGGAACTCAAAGGAG+AGG | 0.547602 | 8_3:+49787700 | Msa1292990:CDS |
| GGAACTGCTTGTGATTTGGT+TGG | 0.550581 | 8_3:+49785183 | Msa1292990:CDS |
| GCAACGGATATAGGAAATGC+TGG | 0.559363 | 8_3:+49785117 | Msa1292990:CDS |
| GAAAATTGAACATTTCAACT+AGG | 0.568916 | 8_3:+49787784 | Msa1292990:CDS |
| ATATCAGGAATGACAGGAGG+AGG | 0.569761 | 8_3:+49787480 | Msa1292990:CDS |
| AAACTGAGTAGAAACAAAAG+TGG | 0.576179 | 8_3:-49785325 | None:intergenic |
| ATATATTAAGAATAATGGTA+AGG | 0.576979 | 8_3:-49787607 | None:intergenic |
| AGGGAGAAAGGCTCTCATCA+TGG | 0.577211 | 8_3:+49787720 | Msa1292990:CDS |
| GCTCAACAAAATTCACTGCA+TGG | 0.585027 | 8_3:+49785952 | Msa1292990:CDS |
| ATAGAAGTGAAGTAAACAGC+AGG | 0.585810 | 8_3:-49785246 | None:intergenic |
| CTCTATAATTTAACACACCA+TGG | 0.586174 | 8_3:-49786121 | None:intergenic |
| TTTGTGGATTTGTCAAACGT+TGG | 0.593191 | 8_3:+49786364 | Msa1292990:CDS |
| GCTAAGAGATTTGGAATGAG+GGG | 0.599275 | 8_3:+49786329 | Msa1292990:CDS |
| AATAGTAGAAGTGAAAGAGG+TGG | 0.601395 | 8_3:+49787762 | Msa1292990:CDS |
| ACAGGAGGAGGAGGAAACGT+TGG | 0.608583 | 8_3:+49787492 | Msa1292990:CDS |
| TGAATGGAACTCAAAGGAGA+GGG | 0.609630 | 8_3:+49787701 | Msa1292990:CDS |
| CATTTCAACTAGGCCATCTG+AGG | 0.610193 | 8_3:+49787794 | Msa1292990:CDS |
| TATGGCTGAATGGAACTCAA+AGG | 0.622357 | 8_3:+49787695 | Msa1292990:CDS |
| TTGTTAGTTACATATTCACA+TGG | 0.624295 | 8_3:+49787924 | Msa1292990:three_prime_UTR |
| TGTATCAGTGAAAACACAAG+TGG | 0.625394 | 8_3:-49785921 | None:intergenic |
| ATCTCAAAAGTAATTTACCA+TGG | 0.629190 | 8_3:+49786104 | Msa1292990:CDS |
| ATGGTGTGTTAAATTATAGA+GGG | 0.629408 | 8_3:+49786123 | Msa1292990:CDS |
| GGTGGTGTAACATCCTCAGA+TGG | 0.636910 | 8_3:-49787807 | None:intergenic |
| TCACGGATTATAGGAACAAG+TGG | 0.646242 | 8_3:-49785078 | None:intergenic |
| GTCATATCAGGAATGACAGG+AGG | 0.646603 | 8_3:+49787477 | Msa1292990:CDS |
| CAACCTTAACCTAACAGCAA+CGG | 0.647550 | 8_3:+49785101 | Msa1292990:CDS |
| AGATGAAATGCTAGCATGTG+AGG | 0.648457 | 8_3:-49785006 | None:intergenic |
| GTTGTGTTGCTCCTCCACCA+AGG | 0.675542 | 8_3:-49785890 | None:intergenic |
| AAAGCAGCAGAAGCAAGACG+AGG | 0.678632 | 8_3:-49785207 | None:intergenic |
| ATTTGCTCTTCCAACAACAG+TGG | 0.700274 | 8_3:-49785370 | None:intergenic |
| CTCACAAGAAGAAAACCAGT+AGG | 0.723236 | 8_3:-49785279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACTTTTAACTTTTTTTA+AGG | + | chr8_3:49785482-49785501 | Msa1292990:intron | 10.0% |
| !! | AATTTCAATATGAATAAATT+TGG | - | chr8_3:49785594-49785613 | None:intergenic | 10.0% |
| !!! | AAATTTGTTCATATTAAAAT+TGG | - | chr8_3:49785687-49785706 | None:intergenic | 10.0% |
| !! | TTAAAATAATGAAAAATGAA+AGG | - | chr8_3:49786531-49786550 | None:intergenic | 10.0% |
| !!! | CTTTTTTTAAGGTTTAAATA+TGG | + | chr8_3:49785493-49785512 | Msa1292990:intron | 15.0% |
| !! | TAAAAATTGATATATTTGCA+GGG | - | chr8_3:49785538-49785557 | None:intergenic | 15.0% |
| !!! | AATATGAACAAATTTTATCA+AGG | + | chr8_3:49785692-49785711 | Msa1292990:intron | 15.0% |
| !!! | GCATTTTCTATTTTAATATT+TGG | + | chr8_3:49786017-49786036 | Msa1292990:CDS | 15.0% |
| !! | ATATATTAAGAATAATGGTA+AGG | - | chr8_3:49787610-49787629 | None:intergenic | 15.0% |
| !! | GGAAAATATATTAAGAATAA+TGG | - | chr8_3:49787615-49787634 | None:intergenic | 15.0% |
| !!! | TATTGAGTGTATTTTGAATA+TGG | - | chr8_3:49784980-49784999 | None:intergenic | 20.0% |
| !! | GTAAAAATTGATATATTTGC+AGG | - | chr8_3:49785539-49785558 | None:intergenic | 20.0% |
| !! | TGGTTTATTATCTGATTTAA+TGG | + | chr8_3:49786307-49786326 | Msa1292990:CDS | 20.0% |
| !! | AATAAAACTCGTAACATTTA+GGG | + | chr8_3:49786650-49786669 | Msa1292990:intron | 20.0% |
| !!! | TTATGGTATTGAATAACTTT+TGG | + | chr8_3:49786750-49786769 | Msa1292990:intron | 20.0% |
| !!! | TGGTCTTATACAATTTTTTA+TGG | + | chr8_3:49786770-49786789 | Msa1292990:intron | 20.0% |
| !! | AAATTAAGCCATTAAATTTG+TGG | - | chr8_3:49787249-49787268 | None:intergenic | 20.0% |
| !!! | TCTTAATATATTTTCCACAA+TGG | + | chr8_3:49787619-49787638 | Msa1292990:CDS | 20.0% |
| !!! | CTTAATATATTTTCCACAAT+GGG | + | chr8_3:49787620-49787639 | Msa1292990:CDS | 20.0% |
| !!! | TTAATATATTTTCCACAATG+GGG | + | chr8_3:49787621-49787640 | Msa1292990:CDS | 20.0% |
| !! | AAAAAAAATCAAACATGTTG+TGG | - | chr8_3:49787831-49787850 | None:intergenic | 20.0% |
| !! | GTAAATTTGTGTATCTTTAT+TGG | + | chr8_3:49787880-49787899 | Msa1292990:three_prime_UTR | 20.0% |
| !!! | TGATTTGTTTTCTGAATCTA+CGG | - | chr8_3:49784956-49784975 | None:intergenic | 25.0% |
| !! | TGCTTAAAAAATGTTTTCTC+AGG | + | chr8_3:49785855-49785874 | Msa1292990:intron | 25.0% |
| !! | TTAAAAAATGTTTTCTCAGG+TGG | + | chr8_3:49785858-49785877 | Msa1292990:intron | 25.0% |
| !! | TAAAAAATGTTTTCTCAGGT+GGG | + | chr8_3:49785859-49785878 | Msa1292990:intron | 25.0% |
| !! | TTTTCACTGATACAAGATTT+TGG | + | chr8_3:49785930-49785949 | Msa1292990:CDS | 25.0% |
| ! | TATCATAGCTTAAAGAAATC+AGG | + | chr8_3:49786062-49786081 | Msa1292990:CDS | 25.0% |
| ! | ATCTCAAAAGTAATTTACCA+TGG | + | chr8_3:49786104-49786123 | Msa1292990:CDS | 25.0% |
| ! | ATGGTGTGTTAAATTATAGA+GGG | + | chr8_3:49786123-49786142 | Msa1292990:CDS | 25.0% |
| !! | TTGACTTATGGTTATTGTTT+TGG | + | chr8_3:49786158-49786177 | Msa1292990:CDS | 25.0% |
| !!! | TTACGAGTTTTATTGAATCT+GGG | - | chr8_3:49786644-49786663 | None:intergenic | 25.0% |
| ! | CAATAAAACTCGTAACATTT+AGG | + | chr8_3:49786649-49786668 | Msa1292990:intron | 25.0% |
| !!! | TTTGATTTGCTGAAAAATGA+AGG | - | chr8_3:49786970-49786989 | None:intergenic | 25.0% |
| !!! | AACTAACTTGTTGAACTTAA+GGG | - | chr8_3:49786997-49787016 | None:intergenic | 25.0% |
| ! | TAAACTAACTATTGATCGAA+TGG | - | chr8_3:49787105-49787124 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTGTTTATTAATG+TGG | - | chr8_3:49787228-49787247 | None:intergenic | 25.0% |
| ! | CAAAAGAACCACAAATTTAA+TGG | + | chr8_3:49787238-49787257 | Msa1292990:intron | 25.0% |
| ! | TGAAAGAAAAACTTGTAACA+CGG | + | chr8_3:49787346-49787365 | Msa1292990:intron | 25.0% |
| ! | TTAACATATGCAACAAATTC+AGG | + | chr8_3:49787445-49787464 | Msa1292990:intron | 25.0% |
| !! | TCCTTTGAAGAAAATTAGTT+GGG | - | chr8_3:49787529-49787548 | None:intergenic | 25.0% |
| !! | ATCCTTTGAAGAAAATTAGT+TGG | - | chr8_3:49787530-49787549 | None:intergenic | 25.0% |
| !! | TCAAGATTTTCAAAAGAAAG+AGG | + | chr8_3:49787549-49787568 | Msa1292990:CDS | 25.0% |
| ! | GAAAATTGAACATTTCAACT+AGG | + | chr8_3:49787784-49787803 | Msa1292990:CDS | 25.0% |
| ! | TTGTTAGTTACATATTCACA+TGG | + | chr8_3:49787924-49787943 | Msa1292990:three_prime_UTR | 25.0% |
| TGTGTTTCTTTGATTGGATT+GGG | - | chr8_3:49784866-49784885 | None:intergenic | 30.0% | |
| TTGTGTTTCTTTGATTGGAT+TGG | - | chr8_3:49784867-49784886 | None:intergenic | 30.0% | |
| CATGATTGTGTTTCTTTGAT+TGG | - | chr8_3:49784872-49784891 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTTGTTGTTGTTG+AGG | - | chr8_3:49784928-49784947 | None:intergenic | 30.0% |
| !! | ATTTGTTTTCTGAATCTACG+GGG | - | chr8_3:49784954-49784973 | None:intergenic | 30.0% |
| !! | GATTTGTTTTCTGAATCTAC+GGG | - | chr8_3:49784955-49784974 | None:intergenic | 30.0% |
| !! | TGTTTTTGCAAGAATTGCAA+TGG | + | chr8_3:49785161-49785180 | Msa1292990:CDS | 30.0% |
| ! | GTTTTTGCAAGAATTGCAAT+GGG | + | chr8_3:49785162-49785181 | Msa1292990:CDS | 30.0% |
| TCTATTATCAATTCTCCTAC+TGG | + | chr8_3:49785264-49785283 | Msa1292990:CDS | 30.0% | |
| AAACTGAGTAGAAACAAAAG+TGG | - | chr8_3:49785328-49785347 | None:intergenic | 30.0% | |
| !!! | CTTTTGTTTCTACTCAGTTT+TGG | + | chr8_3:49785328-49785347 | Msa1292990:CDS | 30.0% |
| TCAAAGATTGCAAAAATGCT+GGG | - | chr8_3:49785995-49786014 | None:intergenic | 30.0% | |
| AAGCTATGATAATTACCATC+TGG | - | chr8_3:49786053-49786072 | None:intergenic | 30.0% | |
| CTCTATAATTTAACACACCA+TGG | - | chr8_3:49786124-49786143 | None:intergenic | 30.0% | |
| CATGGTGTGTTAAATTATAG+AGG | + | chr8_3:49786122-49786141 | Msa1292990:CDS | 30.0% | |
| !!! | TGGATTTTAGCTTTGACTTA+TGG | + | chr8_3:49786146-49786165 | Msa1292990:CDS | 30.0% |
| !!! | TTATGGTTATTGTTTTGGTG+TGG | + | chr8_3:49786163-49786182 | Msa1292990:CDS | 30.0% |
| TTCAGCTATGATATTGTCAA+TGG | - | chr8_3:49786195-49786214 | None:intergenic | 30.0% | |
| GATTTAATGGCTAAGAGATT+TGG | + | chr8_3:49786320-49786339 | Msa1292990:CDS | 30.0% | |
| !!! | TGGTGTTTTTTGTGTGATTT+TGG | + | chr8_3:49786388-49786407 | Msa1292990:CDS | 30.0% |
| !!! | GGTGTTTTTTGTGTGATTTT+GGG | + | chr8_3:49786389-49786408 | Msa1292990:CDS | 30.0% |
| !!! | GTTACGAGTTTTATTGAATC+TGG | - | chr8_3:49786645-49786664 | None:intergenic | 30.0% |
| ! | GAGTACGTGACAAATTTTTA+TGG | + | chr8_3:49786733-49786752 | Msa1292990:intron | 30.0% |
| TGTAAAACTGTTTCAAAGAC+AGG | - | chr8_3:49786910-49786929 | None:intergenic | 30.0% | |
| TGAAAAATGAAGGATAGGAT+TGG | - | chr8_3:49786960-49786979 | None:intergenic | 30.0% | |
| TTTGCTGAAAAATGAAGGAT+AGG | - | chr8_3:49786965-49786984 | None:intergenic | 30.0% | |
| !! | CAACTAACTTGTTGAACTTA+AGG | - | chr8_3:49786998-49787017 | None:intergenic | 30.0% |
| ! | TGTGGTTAATCTCATTTTCA+AGG | - | chr8_3:49787210-49787229 | None:intergenic | 30.0% |
| TCATCCTTATGAGACTTAAT+TGG | + | chr8_3:49787300-49787319 | Msa1292990:intron | 30.0% | |
| ! | ACCCAACTAATTTTCTTCAA+AGG | + | chr8_3:49787525-49787544 | Msa1292990:CDS | 30.0% |
| AGAAAGAGGAATAACTCTAA+TGG | + | chr8_3:49787563-49787582 | Msa1292990:CDS | 30.0% | |
| GAAAGAGGAATAACTCTAAT+GGG | + | chr8_3:49787564-49787583 | Msa1292990:CDS | 30.0% | |
| TAAGGTGCATATTATGATCA+TGG | - | chr8_3:49787592-49787611 | None:intergenic | 30.0% | |
| CACAGAAGAAGATTACTATA+TGG | + | chr8_3:49787677-49787696 | Msa1292990:CDS | 30.0% | |
| AAGATTACTATATGGCTGAA+TGG | + | chr8_3:49787685-49787704 | Msa1292990:CDS | 30.0% | |
| GATAATAGTAGAAGTGAAAG+AGG | + | chr8_3:49787759-49787778 | Msa1292990:CDS | 30.0% | |
| AAAAATCAAACATGTTGTGG+TGG | - | chr8_3:49787828-49787847 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGTTGAGGTTGAT+TGG | - | chr8_3:49784920-49784939 | None:intergenic | 35.0% |
| TGCTAGCATTTCATCTATCA+TGG | + | chr8_3:49785013-49785032 | Msa1292990:CDS | 35.0% | |
| ! | TTAAGGTTGTCACGGATTAT+AGG | - | chr8_3:49785090-49785109 | None:intergenic | 35.0% |
| ATAGAAGTGAAGTAAACAGC+AGG | - | chr8_3:49785249-49785268 | None:intergenic | 35.0% | |
| ! | ATGTTTTCTACCACTGTTGT+TGG | + | chr8_3:49785360-49785379 | Msa1292990:CDS | 35.0% |
| TGTATCAGTGAAAACACAAG+TGG | - | chr8_3:49785924-49785943 | None:intergenic | 35.0% | |
| GTCAAAGATTGCAAAAATGC+TGG | - | chr8_3:49785996-49786015 | None:intergenic | 35.0% | |
| TTTGGTCAAGATTTACCAGA+TGG | + | chr8_3:49786035-49786054 | Msa1292990:CDS | 35.0% | |
| GTGTGTTAAATTATAGAGGG+TGG | + | chr8_3:49786126-49786145 | Msa1292990:CDS | 35.0% | |
| !!! | GCTAATGTTTTTTCTAGACC+AGG | + | chr8_3:49786281-49786300 | Msa1292990:CDS | 35.0% |
| !!! | AATGTTTTTTCTAGACCAGG+AGG | + | chr8_3:49786284-49786303 | Msa1292990:CDS | 35.0% |
| TTTGTGGATTTGTCAAACGT+TGG | + | chr8_3:49786364-49786383 | Msa1292990:CDS | 35.0% | |
| ! | TTGTTCCTTTTGTCTCAAGA+AGG | + | chr8_3:49786498-49786517 | Msa1292990:CDS | 35.0% |
| ACATACCTTCTTGAGACAAA+AGG | - | chr8_3:49786506-49786525 | None:intergenic | 35.0% | |
| ! | ACATCACAACTTTTTGTCAC+AGG | - | chr8_3:49786831-49786850 | None:intergenic | 35.0% |
| TGTGACAAAAAGTTGTGATG+TGG | + | chr8_3:49786830-49786849 | Msa1292990:intron | 35.0% | |
| CAAAAAGTTGTGATGTGGTT+TGG | + | chr8_3:49786835-49786854 | Msa1292990:intron | 35.0% | |
| AGTGCTCATTACATTGTCAA+TGG | + | chr8_3:49787180-49787199 | Msa1292990:intron | 35.0% | |
| GTCTCCAATTAAGTCTCATA+AGG | - | chr8_3:49787307-49787326 | None:intergenic | 35.0% | |
| TCATTTCTCAAAGACCAACT+AGG | - | chr8_3:49787329-49787348 | None:intergenic | 35.0% | |
| ! | ATATATTTTCCACAATGGGG+TGG | + | chr8_3:49787624-49787643 | Msa1292990:CDS | 35.0% |
| ! | TCTGTGACTTTTGTAGATGA+TGG | - | chr8_3:49787663-49787682 | None:intergenic | 35.0% |
| AATAGTAGAAGTGAAAGAGG+TGG | + | chr8_3:49787762-49787781 | Msa1292990:CDS | 35.0% | |
| ! | CTTTGATTGGATTGGGCTAT+GGG | - | chr8_3:49784859-49784878 | None:intergenic | 40.0% |
| ! | TCTTTGATTGGATTGGGCTA+TGG | - | chr8_3:49784860-49784879 | None:intergenic | 40.0% |
| !! | GTTGATTGGTTGATGGTGTT+GGG | - | chr8_3:49784906-49784925 | None:intergenic | 40.0% |
| ! | TGTTGAGGTTGATTGGTTGA+TGG | - | chr8_3:49784913-49784932 | None:intergenic | 40.0% |
| AGATGAAATGCTAGCATGTG+AGG | - | chr8_3:49785009-49785028 | None:intergenic | 40.0% | |
| ! | TCACGGATTATAGGAACAAG+TGG | - | chr8_3:49785081-49785100 | None:intergenic | 40.0% |
| CTGTTAGGTTAAGGTTGTCA+CGG | - | chr8_3:49785098-49785117 | None:intergenic | 40.0% | |
| CAACCTTAACCTAACAGCAA+CGG | + | chr8_3:49785101-49785120 | Msa1292990:CDS | 40.0% | |
| ! | TATCCGTTGCTGTTAGGTTA+AGG | - | chr8_3:49785107-49785126 | None:intergenic | 40.0% |
| AACCTAACAGCAACGGATAT+AGG | + | chr8_3:49785108-49785127 | Msa1292990:CDS | 40.0% | |
| ! | TTCCTATATCCGTTGCTGTT+AGG | - | chr8_3:49785113-49785132 | None:intergenic | 40.0% |
| AATGGGAACTGCTTGTGATT+TGG | + | chr8_3:49785179-49785198 | Msa1292990:CDS | 40.0% | |
| CTCACAAGAAGAAAACCAGT+AGG | - | chr8_3:49785282-49785301 | None:intergenic | 40.0% | |
| !!! | CTACTGGTTTTCTTCTTGTG+AGG | + | chr8_3:49785280-49785299 | Msa1292990:CDS | 40.0% |
| CTTCTTGTGAGGTTCTTTAC+TGG | + | chr8_3:49785291-49785310 | Msa1292990:CDS | 40.0% | |
| ATTTGCTCTTCCAACAACAG+TGG | - | chr8_3:49785373-49785392 | None:intergenic | 40.0% | |
| ACTGTTGTTGGAAGAGCAAA+TGG | + | chr8_3:49785372-49785391 | Msa1292990:CDS | 40.0% | |
| ! | AAAATGTTTTCTCAGGTGGG+TGG | + | chr8_3:49785862-49785881 | Msa1292990:intron | 40.0% |
| ! | AAATGTTTTCTCAGGTGGGT+GGG | + | chr8_3:49785863-49785882 | Msa1292990:intron | 40.0% |
| GCTCAACAAAATTCACTGCA+TGG | + | chr8_3:49785952-49785971 | Msa1292990:CDS | 40.0% | |
| AACCTTAAACTTCACACTGC+TGG | + | chr8_3:49786233-49786252 | Msa1292990:CDS | 40.0% | |
| TTCCAGCAGTGTGAAGTTTA+AGG | - | chr8_3:49786238-49786257 | None:intergenic | 40.0% | |
| ! | GGAATCATTGCTGCAAGTTT+TGG | + | chr8_3:49786254-49786273 | Msa1292990:CDS | 40.0% |
| !!! | CATTGCTGCAAGTTTTGGTT+TGG | + | chr8_3:49786259-49786278 | Msa1292990:CDS | 40.0% |
| TCAGATAATAAACCACCTCC+TGG | - | chr8_3:49786302-49786321 | None:intergenic | 40.0% | |
| ! | TGGCTAAGAGATTTGGAATG+AGG | + | chr8_3:49786327-49786346 | Msa1292990:CDS | 40.0% |
| ! | GGCTAAGAGATTTGGAATGA+GGG | + | chr8_3:49786328-49786347 | Msa1292990:CDS | 40.0% |
| ! | GCTAAGAGATTTGGAATGAG+GGG | + | chr8_3:49786329-49786348 | Msa1292990:CDS | 40.0% |
| TTGGAATGAGGGGTAGATTA+TGG | + | chr8_3:49786339-49786358 | Msa1292990:CDS | 40.0% | |
| !!! | TGTGTGATTTTGGGACTTGT+TGG | + | chr8_3:49786398-49786417 | Msa1292990:CDS | 40.0% |
| ! | GTTTTTGTTCAAGCTGCTTG+TGG | + | chr8_3:49786461-49786480 | Msa1292990:CDS | 40.0% |
| TAGAACAGCACAACAACACA+AGG | + | chr8_3:49786705-49786724 | Msa1292990:intron | 40.0% | |
| TCAAAGACAGGACAAACTGA+AGG | - | chr8_3:49786898-49786917 | None:intergenic | 40.0% | |
| GACTTAATTGGAGACCTAGT+TGG | + | chr8_3:49787312-49787331 | Msa1292990:intron | 40.0% | |
| TGCAACAAATTCAGGTCCTT+AGG | + | chr8_3:49787453-49787472 | Msa1292990:intron | 40.0% | |
| CATTCCTGATATGACTCCTA+AGG | - | chr8_3:49787472-49787491 | None:intergenic | 40.0% | |
| TATGGCTGAATGGAACTCAA+AGG | + | chr8_3:49787695-49787714 | Msa1292990:CDS | 40.0% | |
| TGAATGGAACTCAAAGGAGA+GGG | + | chr8_3:49787701-49787720 | Msa1292990:CDS | 40.0% | |
| !! | GGTTGATTGGTTGATGGTGT+TGG | - | chr8_3:49784907-49784926 | None:intergenic | 45.0% |
| ! | GTTTTCTGAATCTACGGGGA+GGG | - | chr8_3:49784950-49784969 | None:intergenic | 45.0% |
| ! | TGTTTTCTGAATCTACGGGG+AGG | - | chr8_3:49784951-49784970 | None:intergenic | 45.0% |
| GCAACGGATATAGGAAATGC+TGG | + | chr8_3:49785117-49785136 | Msa1292990:CDS | 45.0% | |
| !! | GGAACTGCTTGTGATTTGGT+TGG | + | chr8_3:49785183-49785202 | Msa1292990:CDS | 45.0% |
| GGAAGAGCAAATGGTTTCTC+AGG | + | chr8_3:49785381-49785400 | Msa1292990:CDS | 45.0% | |
| ! | AATGTTTTCTCAGGTGGGTG+GGG | + | chr8_3:49785864-49785883 | Msa1292990:intron | 45.0% |
| !!! | GTTTTTTCTAGACCAGGAGG+TGG | + | chr8_3:49786287-49786306 | Msa1292990:CDS | 45.0% |
| GGGGTAGATTATGGTGTTTG+TGG | + | chr8_3:49786348-49786367 | Msa1292990:CDS | 45.0% | |
| TGGATTTGTCAAACGTTGGC+TGG | + | chr8_3:49786368-49786387 | Msa1292990:CDS | 45.0% | |
| ! | GCTGCTTGTGGAATGACTTT+TGG | + | chr8_3:49786473-49786492 | Msa1292990:CDS | 45.0% |
| !!! | TGGGTTCGAATTTTGACTCG+AGG | - | chr8_3:49786625-49786644 | None:intergenic | 45.0% |
| ACAGGACAAACTGAAGGCAA+GGG | - | chr8_3:49786892-49786911 | None:intergenic | 45.0% | |
| AGGTCCTTAGGAGTCATATC+AGG | + | chr8_3:49787465-49787484 | Msa1292990:intron | 45.0% | |
| GGAGTCATATCAGGAATGAC+AGG | + | chr8_3:49787474-49787493 | Msa1292990:CDS | 45.0% | |
| GTCATATCAGGAATGACAGG+AGG | + | chr8_3:49787477-49787496 | Msa1292990:CDS | 45.0% | |
| ATATCAGGAATGACAGGAGG+AGG | + | chr8_3:49787480-49787499 | Msa1292990:CDS | 45.0% | |
| AAAAACATGCCACCCCATTG+TGG | - | chr8_3:49787636-49787655 | None:intergenic | 45.0% | |
| !!! | CAATGGGGTGGCATGTTTTT+TGG | + | chr8_3:49787636-49787655 | Msa1292990:CDS | 45.0% |
| CTGAATGGAACTCAAAGGAG+AGG | + | chr8_3:49787700-49787719 | Msa1292990:CDS | 45.0% | |
| AACTCAAAGGAGAGGGAGAA+AGG | + | chr8_3:49787708-49787727 | Msa1292990:CDS | 45.0% | |
| CATTTCAACTAGGCCATCTG+AGG | + | chr8_3:49787794-49787813 | Msa1292990:CDS | 45.0% | |
| !! | GCTGGTGTTGCATCTGTTTC+TGG | + | chr8_3:49785135-49785154 | Msa1292990:CDS | 50.0% |
| AAAGCAGCAGAAGCAAGACG+AGG | - | chr8_3:49785210-49785229 | None:intergenic | 50.0% | |
| GACAGGACAAACTGAAGGCA+AGG | - | chr8_3:49786893-49786912 | None:intergenic | 50.0% | |
| AGGGAGAAAGGCTCTCATCA+TGG | + | chr8_3:49787720-49787739 | Msa1292990:CDS | 50.0% | |
| GGTGGTGTAACATCCTCAGA+TGG | - | chr8_3:49787810-49787829 | None:intergenic | 50.0% | |
| ! | GTTGTGTTGCTCCTCCACCA+AGG | - | chr8_3:49785893-49785912 | None:intergenic | 55.0% |
| TCAGGAATGACAGGAGGAGG+AGG | + | chr8_3:49787483-49787502 | Msa1292990:CDS | 55.0% | |
| ACAGGAGGAGGAGGAAACGT+TGG | + | chr8_3:49787492-49787511 | Msa1292990:CDS | 55.0% | |
| TCAGGTGGGTGGGGTAACCT+TGG | + | chr8_3:49785873-49785892 | Msa1292990:intron | 60.0% | |
| GGTGGGTGGGGTAACCTTGG+TGG | + | chr8_3:49785876-49785895 | Msa1292990:intron | 65.0% | |
| GGGTGGGGTAACCTTGGTGG+AGG | + | chr8_3:49785879-49785898 | Msa1292990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 49784819 | 49788075 | 49784819 | ID=Msa1292990;Name=Msa1292990 |
| chr8_3 | mRNA | 49784819 | 49788075 | 49784819 | ID=Msa1292990-mRNA-1;Parent=Msa1292990;Name=Msa1292990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=70|1|1|1|1|1|3|233|510 |
| chr8_3 | exon | 49784819 | 49785402 | 49784819 | ID=Msa1292990-mRNA-1:exon:13801;Parent=Msa1292990-mRNA-1 |
| chr8_3 | exon | 49785877 | 49786519 | 49785877 | ID=Msa1292990-mRNA-1:exon:13802;Parent=Msa1292990-mRNA-1 |
| chr8_3 | exon | 49787467 | 49788075 | 49787467 | ID=Msa1292990-mRNA-1:exon:13803;Parent=Msa1292990-mRNA-1 |
| chr8_3 | five_prime_UTR | 49784819 | 49784888 | 49784819 | ID=Msa1292990-mRNA-1:five_prime_utr;Parent=Msa1292990-mRNA-1 |
| chr8_3 | CDS | 49784889 | 49785402 | 49784889 | ID=Msa1292990-mRNA-1:cds;Parent=Msa1292990-mRNA-1 |
| chr8_3 | CDS | 49785877 | 49786519 | 49785877 | ID=Msa1292990-mRNA-1:cds;Parent=Msa1292990-mRNA-1 |
| chr8_3 | CDS | 49787467 | 49787842 | 49787467 | ID=Msa1292990-mRNA-1:cds;Parent=Msa1292990-mRNA-1 |
| chr8_3 | three_prime_UTR | 49787843 | 49788075 | 49787843 | ID=Msa1292990-mRNA-1:three_prime_utr;Parent=Msa1292990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
