Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646590 | XP_003606955.1 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646590 | G7JHE2 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094960 | Msa0646590 | 0.851849 | 6.786709e-61 | -8.615850e-47 |
| Msa0605900 | Msa0646590 | 0.936394 | 1.861592e-97 | -8.615850e-47 |
| Msa0646590 | Msa0686530 | 0.998430 | 7.635588e-265 | -8.615850e-47 |
| Msa0646590 | Msa0945900 | 0.803977 | 2.694295e-49 | -8.615850e-47 |
| Msa0646590 | Msa1021560 | 0.817273 | 3.591983e-52 | -8.615850e-47 |
| Msa0646590 | Msa1226370 | 0.815976 | 7.014018e-52 | -8.615850e-47 |
| Msa0646590 | Msa1402010 | 0.804401 | 2.198787e-49 | -8.615850e-47 |
| Msa0173250 | Msa0646590 | 0.809881 | 1.519950e-50 | -8.615850e-47 |
| Msa0226640 | Msa0646590 | 0.800025 | 1.748722e-48 | -8.615850e-47 |
| Msa0458100 | Msa0646590 | 0.813615 | 2.339834e-51 | -8.615850e-47 |
| Msa0260250 | Msa0646590 | 0.819774 | 9.733749e-53 | -8.615850e-47 |
| Msa0260290 | Msa0646590 | 0.818439 | 1.958978e-52 | -8.615850e-47 |
| Msa0304250 | Msa0646590 | 0.857443 | 1.626815e-62 | -8.615850e-47 |
| Msa0550400 | Msa0646590 | 0.998493 | 1.007192e-266 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646590 | MtrunA17_Chr4g0035251 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Msa0646590 | MtrunA17_Chr4g0035261 | 58.000 | 300 | 114 | 6 | 8 | 301 | 8 | 301 | 7.55e-110 | 320 |
| Msa0646590 | MtrunA17_Chr3g0144781 | 55.814 | 301 | 119 | 7 | 6 | 301 | 5 | 296 | 8.91e-102 | 300 |
| Msa0646590 | MtrunA17_Chr3g0144751 | 56.333 | 300 | 121 | 6 | 6 | 301 | 5 | 298 | 2.58e-99 | 293 |
| Msa0646590 | MtrunA17_Chr4g0035231 | 43.253 | 289 | 154 | 4 | 16 | 301 | 15 | 296 | 5.94e-63 | 201 |
| Msa0646590 | MtrunA17_Chr4g0035221 | 41.176 | 289 | 160 | 4 | 16 | 301 | 15 | 296 | 9.80e-60 | 192 |
| Msa0646590 | MtrunA17_Chr8g0370921 | 34.576 | 295 | 182 | 6 | 10 | 300 | 17 | 304 | 9.84e-47 | 159 |
| Msa0646590 | MtrunA17_Chr5g0406531 | 31.525 | 295 | 185 | 8 | 11 | 301 | 3 | 284 | 2.12e-39 | 139 |
| Msa0646590 | MtrunA17_Chr8g0370891 | 32.534 | 292 | 186 | 6 | 13 | 300 | 5 | 289 | 7.77e-39 | 138 |
| Msa0646590 | MtrunA17_Chr8g0370901 | 29.655 | 290 | 195 | 5 | 13 | 300 | 5 | 287 | 8.15e-39 | 138 |
| Msa0646590 | MtrunA17_Chr5g0406361 | 30.573 | 314 | 198 | 9 | 1 | 300 | 7 | 314 | 6.33e-38 | 136 |
| Msa0646590 | MtrunA17_Chr5g0406421 | 30.847 | 295 | 187 | 8 | 9 | 299 | 2 | 283 | 1.07e-37 | 135 |
| Msa0646590 | MtrunA17_Chr5g0406601 | 31.081 | 296 | 185 | 9 | 9 | 299 | 2 | 283 | 2.31e-37 | 134 |
| Msa0646590 | MtrunA17_Chr5g0406411 | 30.847 | 295 | 187 | 8 | 9 | 299 | 2 | 283 | 6.04e-37 | 133 |
| Msa0646590 | MtrunA17_Chr8g0370881 | 30.479 | 292 | 192 | 6 | 13 | 300 | 5 | 289 | 6.70e-37 | 133 |
| Msa0646590 | MtrunA17_Chr5g0406391 | 30.612 | 294 | 189 | 6 | 9 | 299 | 2 | 283 | 7.07e-37 | 133 |
| Msa0646590 | MtrunA17_Chr5g0406501 | 30.872 | 298 | 184 | 11 | 11 | 301 | 3 | 285 | 9.43e-36 | 130 |
| Msa0646590 | MtrunA17_Chr5g0406401 | 29.831 | 295 | 190 | 8 | 9 | 299 | 2 | 283 | 1.35e-35 | 129 |
| Msa0646590 | MtrunA17_Chr5g0406511 | 30.743 | 296 | 190 | 8 | 7 | 299 | 1 | 284 | 1.96e-35 | 129 |
| Msa0646590 | MtrunA17_Chr5g0406561 | 29.392 | 296 | 194 | 7 | 9 | 299 | 2 | 287 | 7.55e-35 | 127 |
| Msa0646590 | MtrunA17_Chr5g0406481 | 30.743 | 296 | 190 | 8 | 7 | 299 | 1 | 284 | 1.24e-34 | 127 |
| Msa0646590 | MtrunA17_Chr5g0406371 | 30.537 | 298 | 182 | 11 | 9 | 299 | 2 | 281 | 1.88e-34 | 126 |
| Msa0646590 | MtrunA17_Chr8g0370861 | 31.596 | 307 | 175 | 9 | 4 | 301 | 3 | 283 | 5.97e-28 | 109 |
| Msa0646590 | MtrunA17_Chr5g0406631 | 30.519 | 308 | 189 | 7 | 9 | 301 | 8 | 305 | 9.59e-23 | 95.9 |
| Msa0646590 | MtrunA17_Chr1g0164671 | 32.900 | 231 | 126 | 8 | 72 | 301 | 24 | 226 | 6.82e-21 | 89.0 |
| Msa0646590 | MtrunA17_Chr5g0406471 | 31.313 | 198 | 119 | 6 | 105 | 301 | 4 | 185 | 4.77e-19 | 83.2 |
| Msa0646590 | MtrunA17_Chr3g0144771 | 48.684 | 76 | 39 | 0 | 1 | 76 | 1 | 76 | 3.43e-13 | 63.9 |
| Msa0646590 | MtrunA17_Chr3g0143741 | 26.144 | 306 | 197 | 11 | 9 | 299 | 23 | 314 | 3.74e-13 | 68.9 |
| Msa0646590 | MtrunA17_Chr5g0406441 | 32.673 | 101 | 66 | 1 | 10 | 108 | 2 | 102 | 1.95e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646590 | AT2G17080.1 | 40.625 | 288 | 137 | 9 | 16 | 301 | 8 | 263 | 4.09e-51 | 169 |
| Msa0646590 | AT2G17070.1 | 38.889 | 288 | 142 | 8 | 16 | 301 | 8 | 263 | 5.35e-51 | 169 |
| Msa0646590 | AT4G35210.1 | 39.223 | 283 | 132 | 9 | 16 | 298 | 8 | 250 | 4.34e-48 | 161 |
| Msa0646590 | AT4G35200.1 | 39.576 | 283 | 134 | 9 | 16 | 298 | 8 | 253 | 2.51e-47 | 159 |
| Msa0646590 | AT4G35690.1 | 34.783 | 299 | 163 | 11 | 13 | 301 | 8 | 284 | 4.20e-42 | 147 |
| Msa0646590 | AT4G35710.1 | 31.313 | 297 | 173 | 9 | 14 | 301 | 9 | 283 | 5.34e-29 | 112 |
| Msa0646590 | AT2G17680.1 | 29.967 | 307 | 167 | 11 | 16 | 300 | 11 | 291 | 1.05e-27 | 109 |
| Msa0646590 | AT4G35720.1 | 28.308 | 325 | 196 | 11 | 7 | 300 | 6 | 324 | 1.66e-20 | 90.1 |
| Msa0646590 | AT4G35680.1 | 29.299 | 314 | 197 | 11 | 4 | 301 | 6 | 310 | 5.93e-20 | 88.6 |
| Msa0646590 | AT1G76210.1 | 29.150 | 247 | 144 | 6 | 57 | 301 | 9 | 226 | 5.34e-19 | 84.3 |
| Msa0646590 | AT3G51400.1 | 29.902 | 204 | 129 | 4 | 100 | 300 | 82 | 274 | 1.10e-18 | 84.3 |
| Msa0646590 | AT4G35660.1 | 27.667 | 300 | 185 | 7 | 9 | 299 | 10 | 286 | 3.94e-15 | 74.7 |
| Msa0646590 | AT1G20520.1 | 26.506 | 249 | 152 | 6 | 54 | 300 | 6 | 225 | 8.94e-13 | 67.0 |
Find 49 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAACCAATTGGAAAATT+TGG | 0.112535 | 4_3:-52366069 | Msa0646590:CDS |
| TGAGAAAATTCTTGGCTTCT+AGG | 0.199154 | 4_3:-52366454 | Msa0646590:CDS |
| ATTTATACAACTAGTGATTA+AGG | 0.290293 | 4_3:+52365964 | None:intergenic |
| AATCGAAACCAAGTAATTAT+TGG | 0.313179 | 4_3:-52366235 | Msa0646590:CDS |
| GGCCGAGGTGAGAAAATTCT+TGG | 0.322610 | 4_3:-52366462 | Msa0646590:CDS |
| ACATGATTGCGTCGAAAGTT+TGG | 0.329591 | 4_3:-52366678 | Msa0646590:CDS |
| TGATGTGATGTTGGACTAAT+AGG | 0.335874 | 4_3:+52366842 | None:intergenic |
| ATTATCTCCTAGCAACAATA+AGG | 0.373881 | 4_3:-52366357 | Msa0646590:CDS |
| TCAAATTCTCCAAAGCTTTG+AGG | 0.381031 | 4_3:+52366411 | None:intergenic |
| CAATCATTTGCAGAACCAAT+TGG | 0.396017 | 4_3:-52366078 | Msa0646590:CDS |
| GAAAGCAATCCTCAAAGCTT+TGG | 0.399242 | 4_3:-52366420 | Msa0646590:CDS |
| CAAAGCTTTGGAGAATTTGA+AGG | 0.400637 | 4_3:-52366408 | Msa0646590:CDS |
| ACCAAGGACCAATAATTACT+TGG | 0.401947 | 4_3:+52366227 | None:intergenic |
| TCCACGCACGTCAAGAGAAA+TGG | 0.417810 | 4_3:-52366625 | Msa0646590:CDS |
| ACCAAGTAATTATTGGTCCT+TGG | 0.430617 | 4_3:-52366228 | Msa0646590:CDS |
| TTTAATCTTTATATCTGGAC+CGG | 0.469654 | 4_3:-52366261 | Msa0646590:CDS |
| ATCAACTCTTCATCGTTGTT+CGG | 0.473180 | 4_3:-52366728 | Msa0646590:CDS |
| TTGCTACAGAACACACATCT+AGG | 0.484586 | 4_3:+52366570 | None:intergenic |
| GTCTGTTGTTCAAGGGTTTG+TGG | 0.488801 | 4_3:-52366045 | Msa0646590:CDS |
| AGTGATCACTCTTTCAATGT+TGG | 0.496374 | 4_3:-52366291 | Msa0646590:CDS |
| ACAAGGACTTGTTGAGTAAG+AGG | 0.502400 | 4_3:+52366647 | None:intergenic |
| ATTTGGAGTCTGTTGTTCAA+GGG | 0.504312 | 4_3:-52366052 | Msa0646590:CDS |
| CGAAATGGAGGTGACGGCCG+AGG | 0.520093 | 4_3:-52366477 | Msa0646590:CDS |
| AAAATTCTTGGCTTCTAGGA+AGG | 0.521847 | 4_3:-52366450 | Msa0646590:CDS |
| TCTCTTGACGTGCGTGGACA+AGG | 0.524756 | 4_3:+52366630 | None:intergenic |
| TCATGATCCTTATTGTTGCT+AGG | 0.526232 | 4_3:+52366350 | None:intergenic |
| TTGAAGGCTAATGTGAAGAA+AGG | 0.526883 | 4_3:-52366392 | Msa0646590:CDS |
| GCTAATGTGAAGAAAGGTAA+AGG | 0.528831 | 4_3:-52366386 | Msa0646590:CDS |
| GCTTATGATGCAGAACAAGA+AGG | 0.533958 | 4_3:-52366198 | Msa0646590:CDS |
| AATTTGGAGTCTGTTGTTCA+AGG | 0.538470 | 4_3:-52366053 | Msa0646590:CDS |
| TCCATTTCTCTTGACGTGCG+TGG | 0.539554 | 4_3:+52366624 | None:intergenic |
| CATTGTAGAATGAGAGGGTG+TGG | 0.553149 | 4_3:+52366788 | None:intergenic |
| CGAGGTTGGTGATGTGATGT+TGG | 0.563264 | 4_3:+52366833 | None:intergenic |
| AGGAGGCGAAATGGAGGTGA+CGG | 0.564930 | 4_3:-52366483 | Msa0646590:CDS |
| ATGAGAGGGTGTGGTTTCGA+TGG | 0.575082 | 4_3:+52366797 | None:intergenic |
| GAAGAGTTGATTGCGTCGAA+AGG | 0.582245 | 4_3:+52366740 | None:intergenic |
| TCTACAATGCAATCAACACT+TGG | 0.582703 | 4_3:-52366774 | Msa0646590:CDS |
| AGATGTGTGTTCTGTAGCAA+AGG | 0.585332 | 4_3:-52366567 | Msa0646590:CDS |
| CATCATAAGCTTTGAAACCA+AGG | 0.589484 | 4_3:+52366211 | None:intergenic |
| AGTGATTAAGGACATTGAGA+AGG | 0.590750 | 4_3:+52365976 | None:intergenic |
| GTGATTAAGGACATTGAGAA+GGG | 0.597371 | 4_3:+52365977 | None:intergenic |
| TTACTTGGTTTCGATTGCGC+CGG | 0.602841 | 4_3:+52366242 | None:intergenic |
| GGTTAGTTTGTTAAGAGACG+TGG | 0.607951 | 4_3:-52366315 | Msa0646590:CDS |
| TGATTGCATTGTAGAATGAG+AGG | 0.610266 | 4_3:+52366782 | None:intergenic |
| ATCATGTAAAGCTTGTAGAT+CGG | 0.622289 | 4_3:+52366694 | None:intergenic |
| GGATTCTCTAATTCATACGA+AGG | 0.644514 | 4_3:-52366546 | Msa0646590:CDS |
| TGATGTTGGACTAATAGGAA+TGG | 0.654192 | 4_3:+52366847 | None:intergenic |
| AGATCCGTCTAAAAGCTCAT+CGG | 0.663380 | 4_3:+52366601 | None:intergenic |
| GATTGCATTGTAGAATGAGA+GGG | 0.668472 | 4_3:+52366783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCACTTTTAATCTTTATATC+TGG | - | chr4_3:52366565-52366584 | Msa0646590:CDS | 20.0% |
| !!! | TCACTTTTAATCTTTATATC+TGG | - | chr4_3:52366565-52366584 | Msa0646590:CDS | 20.0% |
| ! | TTTAATCTTTATATCTGGAC+CGG | - | chr4_3:52366570-52366589 | Msa0646590:CDS | 25.0% |
| ! | AATCGAAACCAAGTAATTAT+TGG | - | chr4_3:52366596-52366615 | Msa0646590:CDS | 25.0% |
| ! | TTTAATCTTTATATCTGGAC+CGG | - | chr4_3:52366570-52366589 | Msa0646590:CDS | 25.0% |
| ! | AATCGAAACCAAGTAATTAT+TGG | - | chr4_3:52366596-52366615 | Msa0646590:CDS | 25.0% |
| ATCATGTAAAGCTTGTAGAT+CGG | + | chr4_3:52366140-52366159 | None:intergenic | 30.0% | |
| ATTATCTCCTAGCAACAATA+AGG | - | chr4_3:52366474-52366493 | Msa0646590:CDS | 30.0% | |
| ATCATGTAAAGCTTGTAGAT+CGG | + | chr4_3:52366140-52366159 | None:intergenic | 30.0% | |
| ATTATCTCCTAGCAACAATA+AGG | - | chr4_3:52366474-52366493 | Msa0646590:CDS | 30.0% | |
| TGATGTTGGACTAATAGGAA+TGG | + | chr4_3:52365987-52366006 | None:intergenic | 35.0% | |
| TGATGTGATGTTGGACTAAT+AGG | + | chr4_3:52365992-52366011 | None:intergenic | 35.0% | |
| GATTGCATTGTAGAATGAGA+GGG | + | chr4_3:52366051-52366070 | None:intergenic | 35.0% | |
| TGATTGCATTGTAGAATGAG+AGG | + | chr4_3:52366052-52366071 | None:intergenic | 35.0% | |
| TCTACAATGCAATCAACACT+TGG | - | chr4_3:52366057-52366076 | Msa0646590:CDS | 35.0% | |
| ATCAACTCTTCATCGTTGTT+CGG | - | chr4_3:52366103-52366122 | Msa0646590:CDS | 35.0% | |
| ! | AGCTTTTAGACGGATCTTTA+AGG | - | chr4_3:52366236-52366255 | Msa0646590:CDS | 35.0% |
| GGATTCTCTAATTCATACGA+AGG | - | chr4_3:52366285-52366304 | Msa0646590:CDS | 35.0% | |
| TCGATTATGCGAAGAAAAAG+AGG | - | chr4_3:52366328-52366347 | Msa0646590:CDS | 35.0% | |
| ATTATGCGAAGAAAAAGAGG+AGG | - | chr4_3:52366331-52366350 | Msa0646590:CDS | 35.0% | |
| TGAGAAAATTCTTGGCTTCT+AGG | - | chr4_3:52366377-52366396 | Msa0646590:CDS | 35.0% | |
| ! | AAAATTCTTGGCTTCTAGGA+AGG | - | chr4_3:52366381-52366400 | Msa0646590:CDS | 35.0% |
| TCAAATTCTCCAAAGCTTTG+AGG | + | chr4_3:52366423-52366442 | None:intergenic | 35.0% | |
| !! | CAAAGCTTTGGAGAATTTGA+AGG | - | chr4_3:52366423-52366442 | Msa0646590:CDS | 35.0% |
| TTGAAGGCTAATGTGAAGAA+AGG | - | chr4_3:52366439-52366458 | Msa0646590:CDS | 35.0% | |
| GCTAATGTGAAGAAAGGTAA+AGG | - | chr4_3:52366445-52366464 | Msa0646590:CDS | 35.0% | |
| TCATGATCCTTATTGTTGCT+AGG | + | chr4_3:52366484-52366503 | None:intergenic | 35.0% | |
| GGATCATGAAAAAGTGACTT+TGG | - | chr4_3:52366495-52366514 | Msa0646590:CDS | 35.0% | |
| AGTGATCACTCTTTCAATGT+TGG | - | chr4_3:52366540-52366559 | Msa0646590:CDS | 35.0% | |
| ACCAAGTAATTATTGGTCCT+TGG | - | chr4_3:52366603-52366622 | Msa0646590:CDS | 35.0% | |
| ACCAAGGACCAATAATTACT+TGG | + | chr4_3:52366607-52366626 | None:intergenic | 35.0% | |
| !! | CATCATAAGCTTTGAAACCA+AGG | + | chr4_3:52366623-52366642 | None:intergenic | 35.0% |
| CAATCATTTGCAGAACCAAT+TGG | - | chr4_3:52366753-52366772 | Msa0646590:CDS | 35.0% | |
| GCAGAACCAATTGGAAAATT+TGG | - | chr4_3:52366762-52366781 | Msa0646590:CDS | 35.0% | |
| ! | CAGACTCCAAATTTTCCAAT+TGG | + | chr4_3:52366771-52366790 | None:intergenic | 35.0% |
| ! | AATTTGGAGTCTGTTGTTCA+AGG | - | chr4_3:52366778-52366797 | Msa0646590:CDS | 35.0% |
| ! | ATTTGGAGTCTGTTGTTCAA+GGG | - | chr4_3:52366779-52366798 | Msa0646590:CDS | 35.0% |
| GTGATTAAGGACATTGAGAA+GGG | + | chr4_3:52366857-52366876 | None:intergenic | 35.0% | |
| AGTGATTAAGGACATTGAGA+AGG | + | chr4_3:52366858-52366877 | None:intergenic | 35.0% | |
| TGATGTTGGACTAATAGGAA+TGG | + | chr4_3:52365987-52366006 | None:intergenic | 35.0% | |
| TGATGTGATGTTGGACTAAT+AGG | + | chr4_3:52365992-52366011 | None:intergenic | 35.0% | |
| GATTGCATTGTAGAATGAGA+GGG | + | chr4_3:52366051-52366070 | None:intergenic | 35.0% | |
| TGATTGCATTGTAGAATGAG+AGG | + | chr4_3:52366052-52366071 | None:intergenic | 35.0% | |
| TCTACAATGCAATCAACACT+TGG | - | chr4_3:52366057-52366076 | Msa0646590:CDS | 35.0% | |
| ATCAACTCTTCATCGTTGTT+CGG | - | chr4_3:52366103-52366122 | Msa0646590:CDS | 35.0% | |
| ! | AGCTTTTAGACGGATCTTTA+AGG | - | chr4_3:52366236-52366255 | Msa0646590:CDS | 35.0% |
| GGATTCTCTAATTCATACGA+AGG | - | chr4_3:52366285-52366304 | Msa0646590:CDS | 35.0% | |
| TCGATTATGCGAAGAAAAAG+AGG | - | chr4_3:52366328-52366347 | Msa0646590:CDS | 35.0% | |
| ATTATGCGAAGAAAAAGAGG+AGG | - | chr4_3:52366331-52366350 | Msa0646590:CDS | 35.0% | |
| TGAGAAAATTCTTGGCTTCT+AGG | - | chr4_3:52366377-52366396 | Msa0646590:CDS | 35.0% | |
| ! | AAAATTCTTGGCTTCTAGGA+AGG | - | chr4_3:52366381-52366400 | Msa0646590:CDS | 35.0% |
| TCAAATTCTCCAAAGCTTTG+AGG | + | chr4_3:52366423-52366442 | None:intergenic | 35.0% | |
| !! | CAAAGCTTTGGAGAATTTGA+AGG | - | chr4_3:52366423-52366442 | Msa0646590:CDS | 35.0% |
| TTGAAGGCTAATGTGAAGAA+AGG | - | chr4_3:52366439-52366458 | Msa0646590:CDS | 35.0% | |
| GCTAATGTGAAGAAAGGTAA+AGG | - | chr4_3:52366445-52366464 | Msa0646590:CDS | 35.0% | |
| TCATGATCCTTATTGTTGCT+AGG | + | chr4_3:52366484-52366503 | None:intergenic | 35.0% | |
| GGATCATGAAAAAGTGACTT+TGG | - | chr4_3:52366495-52366514 | Msa0646590:CDS | 35.0% | |
| AGTGATCACTCTTTCAATGT+TGG | - | chr4_3:52366540-52366559 | Msa0646590:CDS | 35.0% | |
| ACCAAGTAATTATTGGTCCT+TGG | - | chr4_3:52366603-52366622 | Msa0646590:CDS | 35.0% | |
| ACCAAGGACCAATAATTACT+TGG | + | chr4_3:52366607-52366626 | None:intergenic | 35.0% | |
| !! | CATCATAAGCTTTGAAACCA+AGG | + | chr4_3:52366623-52366642 | None:intergenic | 35.0% |
| CAATCATTTGCAGAACCAAT+TGG | - | chr4_3:52366753-52366772 | Msa0646590:CDS | 35.0% | |
| GCAGAACCAATTGGAAAATT+TGG | - | chr4_3:52366762-52366781 | Msa0646590:CDS | 35.0% | |
| ! | CAGACTCCAAATTTTCCAAT+TGG | + | chr4_3:52366771-52366790 | None:intergenic | 35.0% |
| ! | AATTTGGAGTCTGTTGTTCA+AGG | - | chr4_3:52366778-52366797 | Msa0646590:CDS | 35.0% |
| ! | ATTTGGAGTCTGTTGTTCAA+GGG | - | chr4_3:52366779-52366798 | Msa0646590:CDS | 35.0% |
| GTGATTAAGGACATTGAGAA+GGG | + | chr4_3:52366857-52366876 | None:intergenic | 35.0% | |
| AGTGATTAAGGACATTGAGA+AGG | + | chr4_3:52366858-52366877 | None:intergenic | 35.0% | |
| ACATGATTGCGTCGAAAGTT+TGG | - | chr4_3:52366153-52366172 | Msa0646590:CDS | 40.0% | |
| !! | ACAAGGACTTGTTGAGTAAG+AGG | + | chr4_3:52366187-52366206 | None:intergenic | 40.0% |
| AGATCCGTCTAAAAGCTCAT+CGG | + | chr4_3:52366233-52366252 | None:intergenic | 40.0% | |
| TTGCTACAGAACACACATCT+AGG | + | chr4_3:52366264-52366283 | None:intergenic | 40.0% | |
| AGATGTGTGTTCTGTAGCAA+AGG | - | chr4_3:52366264-52366283 | Msa0646590:CDS | 40.0% | |
| AAGAAAAAGAGGAGGCGAAA+TGG | - | chr4_3:52366339-52366358 | Msa0646590:CDS | 40.0% | |
| ! | AGCCAAGAATTTTCTCACCT+CGG | + | chr4_3:52366374-52366393 | None:intergenic | 40.0% |
| GAAAGCAATCCTCAAAGCTT+TGG | - | chr4_3:52366411-52366430 | Msa0646590:CDS | 40.0% | |
| !! | GGTTAGTTTGTTAAGAGACG+TGG | - | chr4_3:52366516-52366535 | Msa0646590:CDS | 40.0% |
| GCTTATGATGCAGAACAAGA+AGG | - | chr4_3:52366633-52366652 | Msa0646590:CDS | 40.0% | |
| ACATGATTGCGTCGAAAGTT+TGG | - | chr4_3:52366153-52366172 | Msa0646590:CDS | 40.0% | |
| !! | ACAAGGACTTGTTGAGTAAG+AGG | + | chr4_3:52366187-52366206 | None:intergenic | 40.0% |
| AGATCCGTCTAAAAGCTCAT+CGG | + | chr4_3:52366233-52366252 | None:intergenic | 40.0% | |
| TTGCTACAGAACACACATCT+AGG | + | chr4_3:52366264-52366283 | None:intergenic | 40.0% | |
| AGATGTGTGTTCTGTAGCAA+AGG | - | chr4_3:52366264-52366283 | Msa0646590:CDS | 40.0% | |
| AAGAAAAAGAGGAGGCGAAA+TGG | - | chr4_3:52366339-52366358 | Msa0646590:CDS | 40.0% | |
| ! | AGCCAAGAATTTTCTCACCT+CGG | + | chr4_3:52366374-52366393 | None:intergenic | 40.0% |
| GAAAGCAATCCTCAAAGCTT+TGG | - | chr4_3:52366411-52366430 | Msa0646590:CDS | 40.0% | |
| !! | GGTTAGTTTGTTAAGAGACG+TGG | - | chr4_3:52366516-52366535 | Msa0646590:CDS | 40.0% |
| GCTTATGATGCAGAACAAGA+AGG | - | chr4_3:52366633-52366652 | Msa0646590:CDS | 40.0% | |
| CATTGTAGAATGAGAGGGTG+TGG | + | chr4_3:52366046-52366065 | None:intergenic | 45.0% | |
| ! | GAAGAGTTGATTGCGTCGAA+AGG | + | chr4_3:52366094-52366113 | None:intergenic | 45.0% |
| ! | TGGACCGATGAGCTTTTAGA+CGG | - | chr4_3:52366226-52366245 | Msa0646590:CDS | 45.0% |
| AAAAAGAGGAGGCGAAATGG+AGG | - | chr4_3:52366342-52366361 | Msa0646590:CDS | 45.0% | |
| TTACTTGGTTTCGATTGCGC+CGG | + | chr4_3:52366592-52366611 | None:intergenic | 45.0% | |
| GTCTGTTGTTCAAGGGTTTG+TGG | - | chr4_3:52366786-52366805 | Msa0646590:CDS | 45.0% | |
| CATTGTAGAATGAGAGGGTG+TGG | + | chr4_3:52366046-52366065 | None:intergenic | 45.0% | |
| ! | GAAGAGTTGATTGCGTCGAA+AGG | + | chr4_3:52366094-52366113 | None:intergenic | 45.0% |
| ! | TGGACCGATGAGCTTTTAGA+CGG | - | chr4_3:52366226-52366245 | Msa0646590:CDS | 45.0% |
| AAAAAGAGGAGGCGAAATGG+AGG | - | chr4_3:52366342-52366361 | Msa0646590:CDS | 45.0% | |
| TTACTTGGTTTCGATTGCGC+CGG | + | chr4_3:52366592-52366611 | None:intergenic | 45.0% | |
| GTCTGTTGTTCAAGGGTTTG+TGG | - | chr4_3:52366786-52366805 | Msa0646590:CDS | 45.0% | |
| !! | CGAGGTTGGTGATGTGATGT+TGG | + | chr4_3:52366001-52366020 | None:intergenic | 50.0% |
| ! | ATGAGAGGGTGTGGTTTCGA+TGG | + | chr4_3:52366037-52366056 | None:intergenic | 50.0% |
| TCCACGCACGTCAAGAGAAA+TGG | - | chr4_3:52366206-52366225 | Msa0646590:CDS | 50.0% | |
| TCCATTTCTCTTGACGTGCG+TGG | + | chr4_3:52366210-52366229 | None:intergenic | 50.0% | |
| GGCCGAGGTGAGAAAATTCT+TGG | - | chr4_3:52366369-52366388 | Msa0646590:CDS | 50.0% | |
| !! | CGAGGTTGGTGATGTGATGT+TGG | + | chr4_3:52366001-52366020 | None:intergenic | 50.0% |
| ! | ATGAGAGGGTGTGGTTTCGA+TGG | + | chr4_3:52366037-52366056 | None:intergenic | 50.0% |
| TCCACGCACGTCAAGAGAAA+TGG | - | chr4_3:52366206-52366225 | Msa0646590:CDS | 50.0% | |
| TCCATTTCTCTTGACGTGCG+TGG | + | chr4_3:52366210-52366229 | None:intergenic | 50.0% | |
| GGCCGAGGTGAGAAAATTCT+TGG | - | chr4_3:52366369-52366388 | Msa0646590:CDS | 50.0% | |
| !! | GCAAGCTTTTCGAGCGAGGT+TGG | + | chr4_3:52366015-52366034 | None:intergenic | 55.0% |
| !! | GATGGCAAGCTTTTCGAGCG+AGG | + | chr4_3:52366019-52366038 | None:intergenic | 55.0% |
| TCTCTTGACGTGCGTGGACA+AGG | + | chr4_3:52366204-52366223 | None:intergenic | 55.0% | |
| AGGAGGCGAAATGGAGGTGA+CGG | - | chr4_3:52366348-52366367 | Msa0646590:CDS | 55.0% | |
| !! | GCAAGCTTTTCGAGCGAGGT+TGG | + | chr4_3:52366015-52366034 | None:intergenic | 55.0% |
| !! | GATGGCAAGCTTTTCGAGCG+AGG | + | chr4_3:52366019-52366038 | None:intergenic | 55.0% |
| TCTCTTGACGTGCGTGGACA+AGG | + | chr4_3:52366204-52366223 | None:intergenic | 55.0% | |
| AGGAGGCGAAATGGAGGTGA+CGG | - | chr4_3:52366348-52366367 | Msa0646590:CDS | 55.0% | |
| ! | CGAAATGGAGGTGACGGCCG+AGG | - | chr4_3:52366354-52366373 | Msa0646590:CDS | 65.0% |
| ! | CGAAATGGAGGTGACGGCCG+AGG | - | chr4_3:52366354-52366373 | Msa0646590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52365974 | 52366879 | 52365974 | ID=Msa0646590;Name=Msa0646590 |
| chr4_3 | mRNA | 52365974 | 52366879 | 52365974 | ID=Msa0646590-mRNA-1;Parent=Msa0646590;Name=Msa0646590-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|301 |
| chr4_3 | exon | 52365974 | 52366879 | 52365974 | ID=Msa0646590-mRNA-1:exon:12850;Parent=Msa0646590-mRNA-1 |
| chr4_3 | CDS | 52365974 | 52366879 | 52365974 | ID=Msa0646590-mRNA-1:cds;Parent=Msa0646590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
