Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686530 | XP_003606955.1 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686530 | G7JHE2 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094960 | Msa0686530 | 0.851876 | 6.667238e-61 | -8.615850e-47 |
| Msa0605900 | Msa0686530 | 0.935561 | 6.988667e-97 | -8.615850e-47 |
| Msa0646590 | Msa0686530 | 0.998430 | 7.635588e-265 | -8.615850e-47 |
| Msa0686530 | Msa0945900 | 0.803112 | 4.072781e-49 | -8.615850e-47 |
| Msa0686530 | Msa1021560 | 0.814578 | 1.434696e-51 | -8.615850e-47 |
| Msa0686530 | Msa1226370 | 0.811770 | 5.930141e-51 | -8.615850e-47 |
| Msa0686530 | Msa1402010 | 0.800940 | 1.138683e-48 | -8.615850e-47 |
| Msa0173250 | Msa0686530 | 0.806758 | 7.040169e-50 | -8.615850e-47 |
| Msa0458100 | Msa0686530 | 0.810138 | 1.337910e-50 | -8.615850e-47 |
| Msa0260250 | Msa0686530 | 0.819335 | 1.226175e-52 | -8.615850e-47 |
| Msa0260290 | Msa0686530 | 0.818207 | 2.211472e-52 | -8.615850e-47 |
| Msa0304250 | Msa0686530 | 0.857380 | 1.698090e-62 | -8.615850e-47 |
| Msa0550400 | Msa0686530 | 0.998567 | 5.300022e-269 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686530 | MtrunA17_Chr4g0035251 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Msa0686530 | MtrunA17_Chr4g0035261 | 58.000 | 300 | 114 | 6 | 8 | 301 | 8 | 301 | 7.55e-110 | 320 |
| Msa0686530 | MtrunA17_Chr3g0144781 | 55.814 | 301 | 119 | 7 | 6 | 301 | 5 | 296 | 8.91e-102 | 300 |
| Msa0686530 | MtrunA17_Chr3g0144751 | 56.333 | 300 | 121 | 6 | 6 | 301 | 5 | 298 | 2.58e-99 | 293 |
| Msa0686530 | MtrunA17_Chr4g0035231 | 43.253 | 289 | 154 | 4 | 16 | 301 | 15 | 296 | 5.94e-63 | 201 |
| Msa0686530 | MtrunA17_Chr4g0035221 | 41.176 | 289 | 160 | 4 | 16 | 301 | 15 | 296 | 9.80e-60 | 192 |
| Msa0686530 | MtrunA17_Chr8g0370921 | 34.576 | 295 | 182 | 6 | 10 | 300 | 17 | 304 | 9.84e-47 | 159 |
| Msa0686530 | MtrunA17_Chr5g0406531 | 31.525 | 295 | 185 | 8 | 11 | 301 | 3 | 284 | 2.12e-39 | 139 |
| Msa0686530 | MtrunA17_Chr8g0370891 | 32.534 | 292 | 186 | 6 | 13 | 300 | 5 | 289 | 7.77e-39 | 138 |
| Msa0686530 | MtrunA17_Chr8g0370901 | 29.655 | 290 | 195 | 5 | 13 | 300 | 5 | 287 | 8.15e-39 | 138 |
| Msa0686530 | MtrunA17_Chr5g0406361 | 30.573 | 314 | 198 | 9 | 1 | 300 | 7 | 314 | 6.33e-38 | 136 |
| Msa0686530 | MtrunA17_Chr5g0406421 | 30.847 | 295 | 187 | 8 | 9 | 299 | 2 | 283 | 1.07e-37 | 135 |
| Msa0686530 | MtrunA17_Chr5g0406601 | 31.081 | 296 | 185 | 9 | 9 | 299 | 2 | 283 | 2.31e-37 | 134 |
| Msa0686530 | MtrunA17_Chr5g0406411 | 30.847 | 295 | 187 | 8 | 9 | 299 | 2 | 283 | 6.04e-37 | 133 |
| Msa0686530 | MtrunA17_Chr8g0370881 | 30.479 | 292 | 192 | 6 | 13 | 300 | 5 | 289 | 6.70e-37 | 133 |
| Msa0686530 | MtrunA17_Chr5g0406391 | 30.612 | 294 | 189 | 6 | 9 | 299 | 2 | 283 | 7.07e-37 | 133 |
| Msa0686530 | MtrunA17_Chr5g0406501 | 30.872 | 298 | 184 | 11 | 11 | 301 | 3 | 285 | 9.43e-36 | 130 |
| Msa0686530 | MtrunA17_Chr5g0406401 | 29.831 | 295 | 190 | 8 | 9 | 299 | 2 | 283 | 1.35e-35 | 129 |
| Msa0686530 | MtrunA17_Chr5g0406511 | 30.743 | 296 | 190 | 8 | 7 | 299 | 1 | 284 | 1.96e-35 | 129 |
| Msa0686530 | MtrunA17_Chr5g0406561 | 29.392 | 296 | 194 | 7 | 9 | 299 | 2 | 287 | 7.55e-35 | 127 |
| Msa0686530 | MtrunA17_Chr5g0406481 | 30.743 | 296 | 190 | 8 | 7 | 299 | 1 | 284 | 1.24e-34 | 127 |
| Msa0686530 | MtrunA17_Chr5g0406371 | 30.537 | 298 | 182 | 11 | 9 | 299 | 2 | 281 | 1.88e-34 | 126 |
| Msa0686530 | MtrunA17_Chr8g0370861 | 31.596 | 307 | 175 | 9 | 4 | 301 | 3 | 283 | 5.97e-28 | 109 |
| Msa0686530 | MtrunA17_Chr5g0406631 | 30.519 | 308 | 189 | 7 | 9 | 301 | 8 | 305 | 9.59e-23 | 95.9 |
| Msa0686530 | MtrunA17_Chr1g0164671 | 32.900 | 231 | 126 | 8 | 72 | 301 | 24 | 226 | 6.82e-21 | 89.0 |
| Msa0686530 | MtrunA17_Chr5g0406471 | 31.313 | 198 | 119 | 6 | 105 | 301 | 4 | 185 | 4.77e-19 | 83.2 |
| Msa0686530 | MtrunA17_Chr3g0144771 | 48.684 | 76 | 39 | 0 | 1 | 76 | 1 | 76 | 3.43e-13 | 63.9 |
| Msa0686530 | MtrunA17_Chr3g0143741 | 26.144 | 306 | 197 | 11 | 9 | 299 | 23 | 314 | 3.74e-13 | 68.9 |
| Msa0686530 | MtrunA17_Chr5g0406441 | 32.673 | 101 | 66 | 1 | 10 | 108 | 2 | 102 | 1.95e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686530 | AT2G17080.1 | 40.625 | 288 | 137 | 9 | 16 | 301 | 8 | 263 | 4.09e-51 | 169 |
| Msa0686530 | AT2G17070.1 | 38.889 | 288 | 142 | 8 | 16 | 301 | 8 | 263 | 5.35e-51 | 169 |
| Msa0686530 | AT4G35210.1 | 39.223 | 283 | 132 | 9 | 16 | 298 | 8 | 250 | 4.34e-48 | 161 |
| Msa0686530 | AT4G35200.1 | 39.576 | 283 | 134 | 9 | 16 | 298 | 8 | 253 | 2.51e-47 | 159 |
| Msa0686530 | AT4G35690.1 | 34.783 | 299 | 163 | 11 | 13 | 301 | 8 | 284 | 4.20e-42 | 147 |
| Msa0686530 | AT4G35710.1 | 31.313 | 297 | 173 | 9 | 14 | 301 | 9 | 283 | 5.34e-29 | 112 |
| Msa0686530 | AT2G17680.1 | 29.967 | 307 | 167 | 11 | 16 | 300 | 11 | 291 | 1.05e-27 | 109 |
| Msa0686530 | AT4G35720.1 | 28.308 | 325 | 196 | 11 | 7 | 300 | 6 | 324 | 1.66e-20 | 90.1 |
| Msa0686530 | AT4G35680.1 | 29.299 | 314 | 197 | 11 | 4 | 301 | 6 | 310 | 5.93e-20 | 88.6 |
| Msa0686530 | AT1G76210.1 | 29.150 | 247 | 144 | 6 | 57 | 301 | 9 | 226 | 5.34e-19 | 84.3 |
| Msa0686530 | AT3G51400.1 | 29.902 | 204 | 129 | 4 | 100 | 300 | 82 | 274 | 1.10e-18 | 84.3 |
| Msa0686530 | AT4G35660.1 | 27.667 | 300 | 185 | 7 | 9 | 299 | 10 | 286 | 3.94e-15 | 74.7 |
| Msa0686530 | AT1G20520.1 | 26.506 | 249 | 152 | 6 | 54 | 300 | 6 | 225 | 8.94e-13 | 67.0 |
Find 49 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAACCAATTGGAAAATT+TGG | 0.112535 | 4_4:-51038948 | Msa0686530:CDS |
| TGAGAAAATTCTTGGCTTCT+AGG | 0.199154 | 4_4:-51039333 | Msa0686530:CDS |
| ATTTATACAACTAGTGATTA+AGG | 0.290293 | 4_4:+51038843 | None:intergenic |
| AATCGAAACCAAGTAATTAT+TGG | 0.313179 | 4_4:-51039114 | Msa0686530:CDS |
| GGCCGAGGTGAGAAAATTCT+TGG | 0.322610 | 4_4:-51039341 | Msa0686530:CDS |
| ACATGATTGCGTCGAAAGTT+TGG | 0.329591 | 4_4:-51039557 | Msa0686530:CDS |
| TGATGTGATGTTGGACTAAT+AGG | 0.335874 | 4_4:+51039721 | None:intergenic |
| ATTATCTCCTAGCAACAATA+AGG | 0.373881 | 4_4:-51039236 | Msa0686530:CDS |
| TCAAATTCTCCAAAGCTTTG+AGG | 0.381031 | 4_4:+51039290 | None:intergenic |
| CAATCATTTGCAGAACCAAT+TGG | 0.396017 | 4_4:-51038957 | Msa0686530:CDS |
| GAAAGCAATCCTCAAAGCTT+TGG | 0.399242 | 4_4:-51039299 | Msa0686530:CDS |
| CAAAGCTTTGGAGAATTTGA+AGG | 0.400637 | 4_4:-51039287 | Msa0686530:CDS |
| ACCAAGGACCAATAATTACT+TGG | 0.401947 | 4_4:+51039106 | None:intergenic |
| TCCACGCACGTCAAGAGAAA+TGG | 0.417810 | 4_4:-51039504 | Msa0686530:CDS |
| ACCAAGTAATTATTGGTCCT+TGG | 0.430617 | 4_4:-51039107 | Msa0686530:CDS |
| TTTAATCTTTATATCTGGAC+CGG | 0.469654 | 4_4:-51039140 | Msa0686530:CDS |
| ATCAACTCTTCATCGTTGTT+CGG | 0.473180 | 4_4:-51039607 | Msa0686530:CDS |
| TTGCTACAGAACACACATCT+AGG | 0.484586 | 4_4:+51039449 | None:intergenic |
| GTCTGTTGTTCAAGGGTTTG+TGG | 0.488801 | 4_4:-51038924 | Msa0686530:CDS |
| AGTGATCACTCTTTCAATGT+TGG | 0.496374 | 4_4:-51039170 | Msa0686530:CDS |
| ACAAGGACTTGTTGAGTAAG+AGG | 0.502400 | 4_4:+51039526 | None:intergenic |
| ATTTGGAGTCTGTTGTTCAA+GGG | 0.504312 | 4_4:-51038931 | Msa0686530:CDS |
| CGAAATGGAGGTGACGGCCG+AGG | 0.520093 | 4_4:-51039356 | Msa0686530:CDS |
| AAAATTCTTGGCTTCTAGGA+AGG | 0.521847 | 4_4:-51039329 | Msa0686530:CDS |
| TCTCTTGACGTGCGTGGACA+AGG | 0.524756 | 4_4:+51039509 | None:intergenic |
| TCATGATCCTTATTGTTGCT+AGG | 0.526232 | 4_4:+51039229 | None:intergenic |
| TTGAAGGCTAATGTGAAGAA+AGG | 0.526883 | 4_4:-51039271 | Msa0686530:CDS |
| GCTAATGTGAAGAAAGGTAA+AGG | 0.528831 | 4_4:-51039265 | Msa0686530:CDS |
| GCTTATGATGCAGAACAAGA+AGG | 0.533958 | 4_4:-51039077 | Msa0686530:CDS |
| AATTTGGAGTCTGTTGTTCA+AGG | 0.538470 | 4_4:-51038932 | Msa0686530:CDS |
| TCCATTTCTCTTGACGTGCG+TGG | 0.539554 | 4_4:+51039503 | None:intergenic |
| CATTGTAGAATGAGAGGGTG+TGG | 0.553149 | 4_4:+51039667 | None:intergenic |
| CGAGGTTGGTGATGTGATGT+TGG | 0.563264 | 4_4:+51039712 | None:intergenic |
| AGGAGGCGAAATGGAGGTGA+CGG | 0.564930 | 4_4:-51039362 | Msa0686530:CDS |
| ATGAGAGGGTGTGGTTTCGA+TGG | 0.575082 | 4_4:+51039676 | None:intergenic |
| GAAGAGTTGATTGCGTCGAA+AGG | 0.582245 | 4_4:+51039619 | None:intergenic |
| TCTACAATGCAATCAACACT+TGG | 0.582703 | 4_4:-51039653 | Msa0686530:CDS |
| AGATGTGTGTTCTGTAGCAA+AGG | 0.585332 | 4_4:-51039446 | Msa0686530:CDS |
| CATCATAAGCTTTGAAACCA+AGG | 0.589484 | 4_4:+51039090 | None:intergenic |
| AGTGATTAAGGACATTGAGA+AGG | 0.590750 | 4_4:+51038855 | None:intergenic |
| GTGATTAAGGACATTGAGAA+GGG | 0.597371 | 4_4:+51038856 | None:intergenic |
| TTACTTGGTTTCGATTGCGC+CGG | 0.602841 | 4_4:+51039121 | None:intergenic |
| GGTTAGTTTGTTAAGAGACG+TGG | 0.607951 | 4_4:-51039194 | Msa0686530:CDS |
| TGATTGCATTGTAGAATGAG+AGG | 0.610266 | 4_4:+51039661 | None:intergenic |
| ATCATGTAAAGCTTGTAGAT+CGG | 0.622289 | 4_4:+51039573 | None:intergenic |
| GGATTCTCTAATTCATACGA+AGG | 0.644514 | 4_4:-51039425 | Msa0686530:CDS |
| TGATGTTGGACTAATAGGAA+TGG | 0.654192 | 4_4:+51039726 | None:intergenic |
| AGATCCGTCTAAAAGCTCAT+CGG | 0.663380 | 4_4:+51039480 | None:intergenic |
| GATTGCATTGTAGAATGAGA+GGG | 0.668472 | 4_4:+51039662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCACTTTTAATCTTTATATC+TGG | - | chr4_4:51039444-51039463 | Msa0686530:CDS | 20.0% |
| !!! | TCACTTTTAATCTTTATATC+TGG | - | chr4_4:51039444-51039463 | Msa0686530:CDS | 20.0% |
| ! | TTTAATCTTTATATCTGGAC+CGG | - | chr4_4:51039449-51039468 | Msa0686530:CDS | 25.0% |
| ! | AATCGAAACCAAGTAATTAT+TGG | - | chr4_4:51039475-51039494 | Msa0686530:CDS | 25.0% |
| ! | TTTAATCTTTATATCTGGAC+CGG | - | chr4_4:51039449-51039468 | Msa0686530:CDS | 25.0% |
| ! | AATCGAAACCAAGTAATTAT+TGG | - | chr4_4:51039475-51039494 | Msa0686530:CDS | 25.0% |
| ATCATGTAAAGCTTGTAGAT+CGG | + | chr4_4:51039019-51039038 | None:intergenic | 30.0% | |
| ATTATCTCCTAGCAACAATA+AGG | - | chr4_4:51039353-51039372 | Msa0686530:CDS | 30.0% | |
| ATCATGTAAAGCTTGTAGAT+CGG | + | chr4_4:51039019-51039038 | None:intergenic | 30.0% | |
| ATTATCTCCTAGCAACAATA+AGG | - | chr4_4:51039353-51039372 | Msa0686530:CDS | 30.0% | |
| TGATGTTGGACTAATAGGAA+TGG | + | chr4_4:51038866-51038885 | None:intergenic | 35.0% | |
| TGATGTGATGTTGGACTAAT+AGG | + | chr4_4:51038871-51038890 | None:intergenic | 35.0% | |
| GATTGCATTGTAGAATGAGA+GGG | + | chr4_4:51038930-51038949 | None:intergenic | 35.0% | |
| TGATTGCATTGTAGAATGAG+AGG | + | chr4_4:51038931-51038950 | None:intergenic | 35.0% | |
| TCTACAATGCAATCAACACT+TGG | - | chr4_4:51038936-51038955 | Msa0686530:CDS | 35.0% | |
| ATCAACTCTTCATCGTTGTT+CGG | - | chr4_4:51038982-51039001 | Msa0686530:CDS | 35.0% | |
| ! | AGCTTTTAGACGGATCTTTA+AGG | - | chr4_4:51039115-51039134 | Msa0686530:CDS | 35.0% |
| GGATTCTCTAATTCATACGA+AGG | - | chr4_4:51039164-51039183 | Msa0686530:CDS | 35.0% | |
| TCGATTATGCGAAGAAAAAG+AGG | - | chr4_4:51039207-51039226 | Msa0686530:CDS | 35.0% | |
| ATTATGCGAAGAAAAAGAGG+AGG | - | chr4_4:51039210-51039229 | Msa0686530:CDS | 35.0% | |
| TGAGAAAATTCTTGGCTTCT+AGG | - | chr4_4:51039256-51039275 | Msa0686530:CDS | 35.0% | |
| ! | AAAATTCTTGGCTTCTAGGA+AGG | - | chr4_4:51039260-51039279 | Msa0686530:CDS | 35.0% |
| TCAAATTCTCCAAAGCTTTG+AGG | + | chr4_4:51039302-51039321 | None:intergenic | 35.0% | |
| !! | CAAAGCTTTGGAGAATTTGA+AGG | - | chr4_4:51039302-51039321 | Msa0686530:CDS | 35.0% |
| TTGAAGGCTAATGTGAAGAA+AGG | - | chr4_4:51039318-51039337 | Msa0686530:CDS | 35.0% | |
| GCTAATGTGAAGAAAGGTAA+AGG | - | chr4_4:51039324-51039343 | Msa0686530:CDS | 35.0% | |
| TCATGATCCTTATTGTTGCT+AGG | + | chr4_4:51039363-51039382 | None:intergenic | 35.0% | |
| GGATCATGAAAAAGTGACTT+TGG | - | chr4_4:51039374-51039393 | Msa0686530:CDS | 35.0% | |
| AGTGATCACTCTTTCAATGT+TGG | - | chr4_4:51039419-51039438 | Msa0686530:CDS | 35.0% | |
| ACCAAGTAATTATTGGTCCT+TGG | - | chr4_4:51039482-51039501 | Msa0686530:CDS | 35.0% | |
| ACCAAGGACCAATAATTACT+TGG | + | chr4_4:51039486-51039505 | None:intergenic | 35.0% | |
| !! | CATCATAAGCTTTGAAACCA+AGG | + | chr4_4:51039502-51039521 | None:intergenic | 35.0% |
| CAATCATTTGCAGAACCAAT+TGG | - | chr4_4:51039632-51039651 | Msa0686530:CDS | 35.0% | |
| GCAGAACCAATTGGAAAATT+TGG | - | chr4_4:51039641-51039660 | Msa0686530:CDS | 35.0% | |
| ! | CAGACTCCAAATTTTCCAAT+TGG | + | chr4_4:51039650-51039669 | None:intergenic | 35.0% |
| ! | AATTTGGAGTCTGTTGTTCA+AGG | - | chr4_4:51039657-51039676 | Msa0686530:CDS | 35.0% |
| ! | ATTTGGAGTCTGTTGTTCAA+GGG | - | chr4_4:51039658-51039677 | Msa0686530:CDS | 35.0% |
| GTGATTAAGGACATTGAGAA+GGG | + | chr4_4:51039736-51039755 | None:intergenic | 35.0% | |
| AGTGATTAAGGACATTGAGA+AGG | + | chr4_4:51039737-51039756 | None:intergenic | 35.0% | |
| TGATGTTGGACTAATAGGAA+TGG | + | chr4_4:51038866-51038885 | None:intergenic | 35.0% | |
| TGATGTGATGTTGGACTAAT+AGG | + | chr4_4:51038871-51038890 | None:intergenic | 35.0% | |
| GATTGCATTGTAGAATGAGA+GGG | + | chr4_4:51038930-51038949 | None:intergenic | 35.0% | |
| TGATTGCATTGTAGAATGAG+AGG | + | chr4_4:51038931-51038950 | None:intergenic | 35.0% | |
| TCTACAATGCAATCAACACT+TGG | - | chr4_4:51038936-51038955 | Msa0686530:CDS | 35.0% | |
| ATCAACTCTTCATCGTTGTT+CGG | - | chr4_4:51038982-51039001 | Msa0686530:CDS | 35.0% | |
| ! | AGCTTTTAGACGGATCTTTA+AGG | - | chr4_4:51039115-51039134 | Msa0686530:CDS | 35.0% |
| GGATTCTCTAATTCATACGA+AGG | - | chr4_4:51039164-51039183 | Msa0686530:CDS | 35.0% | |
| TCGATTATGCGAAGAAAAAG+AGG | - | chr4_4:51039207-51039226 | Msa0686530:CDS | 35.0% | |
| ATTATGCGAAGAAAAAGAGG+AGG | - | chr4_4:51039210-51039229 | Msa0686530:CDS | 35.0% | |
| TGAGAAAATTCTTGGCTTCT+AGG | - | chr4_4:51039256-51039275 | Msa0686530:CDS | 35.0% | |
| ! | AAAATTCTTGGCTTCTAGGA+AGG | - | chr4_4:51039260-51039279 | Msa0686530:CDS | 35.0% |
| TCAAATTCTCCAAAGCTTTG+AGG | + | chr4_4:51039302-51039321 | None:intergenic | 35.0% | |
| !! | CAAAGCTTTGGAGAATTTGA+AGG | - | chr4_4:51039302-51039321 | Msa0686530:CDS | 35.0% |
| TTGAAGGCTAATGTGAAGAA+AGG | - | chr4_4:51039318-51039337 | Msa0686530:CDS | 35.0% | |
| GCTAATGTGAAGAAAGGTAA+AGG | - | chr4_4:51039324-51039343 | Msa0686530:CDS | 35.0% | |
| TCATGATCCTTATTGTTGCT+AGG | + | chr4_4:51039363-51039382 | None:intergenic | 35.0% | |
| GGATCATGAAAAAGTGACTT+TGG | - | chr4_4:51039374-51039393 | Msa0686530:CDS | 35.0% | |
| AGTGATCACTCTTTCAATGT+TGG | - | chr4_4:51039419-51039438 | Msa0686530:CDS | 35.0% | |
| ACCAAGTAATTATTGGTCCT+TGG | - | chr4_4:51039482-51039501 | Msa0686530:CDS | 35.0% | |
| ACCAAGGACCAATAATTACT+TGG | + | chr4_4:51039486-51039505 | None:intergenic | 35.0% | |
| !! | CATCATAAGCTTTGAAACCA+AGG | + | chr4_4:51039502-51039521 | None:intergenic | 35.0% |
| CAATCATTTGCAGAACCAAT+TGG | - | chr4_4:51039632-51039651 | Msa0686530:CDS | 35.0% | |
| GCAGAACCAATTGGAAAATT+TGG | - | chr4_4:51039641-51039660 | Msa0686530:CDS | 35.0% | |
| ! | CAGACTCCAAATTTTCCAAT+TGG | + | chr4_4:51039650-51039669 | None:intergenic | 35.0% |
| ! | AATTTGGAGTCTGTTGTTCA+AGG | - | chr4_4:51039657-51039676 | Msa0686530:CDS | 35.0% |
| ! | ATTTGGAGTCTGTTGTTCAA+GGG | - | chr4_4:51039658-51039677 | Msa0686530:CDS | 35.0% |
| GTGATTAAGGACATTGAGAA+GGG | + | chr4_4:51039736-51039755 | None:intergenic | 35.0% | |
| AGTGATTAAGGACATTGAGA+AGG | + | chr4_4:51039737-51039756 | None:intergenic | 35.0% | |
| ACATGATTGCGTCGAAAGTT+TGG | - | chr4_4:51039032-51039051 | Msa0686530:CDS | 40.0% | |
| !! | ACAAGGACTTGTTGAGTAAG+AGG | + | chr4_4:51039066-51039085 | None:intergenic | 40.0% |
| AGATCCGTCTAAAAGCTCAT+CGG | + | chr4_4:51039112-51039131 | None:intergenic | 40.0% | |
| TTGCTACAGAACACACATCT+AGG | + | chr4_4:51039143-51039162 | None:intergenic | 40.0% | |
| AGATGTGTGTTCTGTAGCAA+AGG | - | chr4_4:51039143-51039162 | Msa0686530:CDS | 40.0% | |
| AAGAAAAAGAGGAGGCGAAA+TGG | - | chr4_4:51039218-51039237 | Msa0686530:CDS | 40.0% | |
| ! | AGCCAAGAATTTTCTCACCT+CGG | + | chr4_4:51039253-51039272 | None:intergenic | 40.0% |
| GAAAGCAATCCTCAAAGCTT+TGG | - | chr4_4:51039290-51039309 | Msa0686530:CDS | 40.0% | |
| !! | GGTTAGTTTGTTAAGAGACG+TGG | - | chr4_4:51039395-51039414 | Msa0686530:CDS | 40.0% |
| GCTTATGATGCAGAACAAGA+AGG | - | chr4_4:51039512-51039531 | Msa0686530:CDS | 40.0% | |
| ACATGATTGCGTCGAAAGTT+TGG | - | chr4_4:51039032-51039051 | Msa0686530:CDS | 40.0% | |
| !! | ACAAGGACTTGTTGAGTAAG+AGG | + | chr4_4:51039066-51039085 | None:intergenic | 40.0% |
| AGATCCGTCTAAAAGCTCAT+CGG | + | chr4_4:51039112-51039131 | None:intergenic | 40.0% | |
| TTGCTACAGAACACACATCT+AGG | + | chr4_4:51039143-51039162 | None:intergenic | 40.0% | |
| AGATGTGTGTTCTGTAGCAA+AGG | - | chr4_4:51039143-51039162 | Msa0686530:CDS | 40.0% | |
| AAGAAAAAGAGGAGGCGAAA+TGG | - | chr4_4:51039218-51039237 | Msa0686530:CDS | 40.0% | |
| ! | AGCCAAGAATTTTCTCACCT+CGG | + | chr4_4:51039253-51039272 | None:intergenic | 40.0% |
| GAAAGCAATCCTCAAAGCTT+TGG | - | chr4_4:51039290-51039309 | Msa0686530:CDS | 40.0% | |
| !! | GGTTAGTTTGTTAAGAGACG+TGG | - | chr4_4:51039395-51039414 | Msa0686530:CDS | 40.0% |
| GCTTATGATGCAGAACAAGA+AGG | - | chr4_4:51039512-51039531 | Msa0686530:CDS | 40.0% | |
| CATTGTAGAATGAGAGGGTG+TGG | + | chr4_4:51038925-51038944 | None:intergenic | 45.0% | |
| ! | GAAGAGTTGATTGCGTCGAA+AGG | + | chr4_4:51038973-51038992 | None:intergenic | 45.0% |
| ! | TGGACCGATGAGCTTTTAGA+CGG | - | chr4_4:51039105-51039124 | Msa0686530:CDS | 45.0% |
| AAAAAGAGGAGGCGAAATGG+AGG | - | chr4_4:51039221-51039240 | Msa0686530:CDS | 45.0% | |
| TTACTTGGTTTCGATTGCGC+CGG | + | chr4_4:51039471-51039490 | None:intergenic | 45.0% | |
| GTCTGTTGTTCAAGGGTTTG+TGG | - | chr4_4:51039665-51039684 | Msa0686530:CDS | 45.0% | |
| CATTGTAGAATGAGAGGGTG+TGG | + | chr4_4:51038925-51038944 | None:intergenic | 45.0% | |
| ! | GAAGAGTTGATTGCGTCGAA+AGG | + | chr4_4:51038973-51038992 | None:intergenic | 45.0% |
| ! | TGGACCGATGAGCTTTTAGA+CGG | - | chr4_4:51039105-51039124 | Msa0686530:CDS | 45.0% |
| AAAAAGAGGAGGCGAAATGG+AGG | - | chr4_4:51039221-51039240 | Msa0686530:CDS | 45.0% | |
| TTACTTGGTTTCGATTGCGC+CGG | + | chr4_4:51039471-51039490 | None:intergenic | 45.0% | |
| GTCTGTTGTTCAAGGGTTTG+TGG | - | chr4_4:51039665-51039684 | Msa0686530:CDS | 45.0% | |
| !! | CGAGGTTGGTGATGTGATGT+TGG | + | chr4_4:51038880-51038899 | None:intergenic | 50.0% |
| ! | ATGAGAGGGTGTGGTTTCGA+TGG | + | chr4_4:51038916-51038935 | None:intergenic | 50.0% |
| TCCACGCACGTCAAGAGAAA+TGG | - | chr4_4:51039085-51039104 | Msa0686530:CDS | 50.0% | |
| TCCATTTCTCTTGACGTGCG+TGG | + | chr4_4:51039089-51039108 | None:intergenic | 50.0% | |
| GGCCGAGGTGAGAAAATTCT+TGG | - | chr4_4:51039248-51039267 | Msa0686530:CDS | 50.0% | |
| !! | CGAGGTTGGTGATGTGATGT+TGG | + | chr4_4:51038880-51038899 | None:intergenic | 50.0% |
| ! | ATGAGAGGGTGTGGTTTCGA+TGG | + | chr4_4:51038916-51038935 | None:intergenic | 50.0% |
| TCCACGCACGTCAAGAGAAA+TGG | - | chr4_4:51039085-51039104 | Msa0686530:CDS | 50.0% | |
| TCCATTTCTCTTGACGTGCG+TGG | + | chr4_4:51039089-51039108 | None:intergenic | 50.0% | |
| GGCCGAGGTGAGAAAATTCT+TGG | - | chr4_4:51039248-51039267 | Msa0686530:CDS | 50.0% | |
| !! | GCAAGCTTTTCGAGCGAGGT+TGG | + | chr4_4:51038894-51038913 | None:intergenic | 55.0% |
| !! | GATGGCAAGCTTTTCGAGCG+AGG | + | chr4_4:51038898-51038917 | None:intergenic | 55.0% |
| TCTCTTGACGTGCGTGGACA+AGG | + | chr4_4:51039083-51039102 | None:intergenic | 55.0% | |
| AGGAGGCGAAATGGAGGTGA+CGG | - | chr4_4:51039227-51039246 | Msa0686530:CDS | 55.0% | |
| !! | GCAAGCTTTTCGAGCGAGGT+TGG | + | chr4_4:51038894-51038913 | None:intergenic | 55.0% |
| !! | GATGGCAAGCTTTTCGAGCG+AGG | + | chr4_4:51038898-51038917 | None:intergenic | 55.0% |
| TCTCTTGACGTGCGTGGACA+AGG | + | chr4_4:51039083-51039102 | None:intergenic | 55.0% | |
| AGGAGGCGAAATGGAGGTGA+CGG | - | chr4_4:51039227-51039246 | Msa0686530:CDS | 55.0% | |
| ! | CGAAATGGAGGTGACGGCCG+AGG | - | chr4_4:51039233-51039252 | Msa0686530:CDS | 65.0% |
| ! | CGAAATGGAGGTGACGGCCG+AGG | - | chr4_4:51039233-51039252 | Msa0686530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51038853 | 51039758 | 51038853 | ID=Msa0686530;Name=Msa0686530 |
| chr4_4 | mRNA | 51038853 | 51039758 | 51038853 | ID=Msa0686530-mRNA-1;Parent=Msa0686530;Name=Msa0686530-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|301 |
| chr4_4 | exon | 51038853 | 51039758 | 51038853 | ID=Msa0686530-mRNA-1:exon:13136;Parent=Msa0686530-mRNA-1 |
| chr4_4 | CDS | 51038853 | 51039758 | 51038853 | ID=Msa0686530-mRNA-1:cds;Parent=Msa0686530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
