Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550400 | XP_003606955.1 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550400 | G7JHE2 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094960 | Msa0550400 | 0.852768 | 3.717882e-61 | -8.615850e-47 |
| Msa0173250 | Msa0550400 | 0.806618 | 7.537405e-50 | -8.615850e-47 |
| Msa0226640 | Msa0550400 | 0.800731 | 1.256193e-48 | -8.615850e-47 |
| Msa0458100 | Msa0550400 | 0.811630 | 6.359120e-51 | -8.615850e-47 |
| Msa0260250 | Msa0550400 | 0.822118 | 2.809847e-53 | -8.615850e-47 |
| Msa0260290 | Msa0550400 | 0.820790 | 5.693581e-53 | -8.615850e-47 |
| Msa0304250 | Msa0550400 | 0.857706 | 1.359440e-62 | -8.615850e-47 |
| Msa0550400 | Msa0605900 | 0.936981 | 7.261708e-98 | -8.615850e-47 |
| Msa0550400 | Msa0646590 | 0.998493 | 1.007192e-266 | -8.615850e-47 |
| Msa0550400 | Msa0686530 | 0.998567 | 5.300022e-269 | -8.615850e-47 |
| Msa0550400 | Msa1021560 | 0.813705 | 2.235416e-51 | -8.615850e-47 |
| Msa0550400 | Msa1226370 | 0.813828 | 2.100790e-51 | -8.615850e-47 |
| Msa0550400 | Msa1402010 | 0.801192 | 1.010891e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550400 | MtrunA17_Chr4g0035251 | 97.333 | 300 | 8 | 0 | 2 | 301 | 4 | 303 | 0.0 | 592 |
| Msa0550400 | MtrunA17_Chr4g0035261 | 58.000 | 300 | 114 | 6 | 8 | 301 | 8 | 301 | 7.55e-110 | 320 |
| Msa0550400 | MtrunA17_Chr3g0144781 | 55.814 | 301 | 119 | 7 | 6 | 301 | 5 | 296 | 8.91e-102 | 300 |
| Msa0550400 | MtrunA17_Chr3g0144751 | 56.333 | 300 | 121 | 6 | 6 | 301 | 5 | 298 | 2.58e-99 | 293 |
| Msa0550400 | MtrunA17_Chr4g0035231 | 43.253 | 289 | 154 | 4 | 16 | 301 | 15 | 296 | 5.94e-63 | 201 |
| Msa0550400 | MtrunA17_Chr4g0035221 | 41.176 | 289 | 160 | 4 | 16 | 301 | 15 | 296 | 9.80e-60 | 192 |
| Msa0550400 | MtrunA17_Chr8g0370921 | 34.576 | 295 | 182 | 6 | 10 | 300 | 17 | 304 | 9.84e-47 | 159 |
| Msa0550400 | MtrunA17_Chr5g0406531 | 31.525 | 295 | 185 | 8 | 11 | 301 | 3 | 284 | 2.12e-39 | 139 |
| Msa0550400 | MtrunA17_Chr8g0370891 | 32.534 | 292 | 186 | 6 | 13 | 300 | 5 | 289 | 7.77e-39 | 138 |
| Msa0550400 | MtrunA17_Chr8g0370901 | 29.655 | 290 | 195 | 5 | 13 | 300 | 5 | 287 | 8.15e-39 | 138 |
| Msa0550400 | MtrunA17_Chr5g0406361 | 30.573 | 314 | 198 | 9 | 1 | 300 | 7 | 314 | 6.33e-38 | 136 |
| Msa0550400 | MtrunA17_Chr5g0406421 | 30.847 | 295 | 187 | 8 | 9 | 299 | 2 | 283 | 1.07e-37 | 135 |
| Msa0550400 | MtrunA17_Chr5g0406601 | 31.081 | 296 | 185 | 9 | 9 | 299 | 2 | 283 | 2.31e-37 | 134 |
| Msa0550400 | MtrunA17_Chr5g0406411 | 30.847 | 295 | 187 | 8 | 9 | 299 | 2 | 283 | 6.04e-37 | 133 |
| Msa0550400 | MtrunA17_Chr8g0370881 | 30.479 | 292 | 192 | 6 | 13 | 300 | 5 | 289 | 6.70e-37 | 133 |
| Msa0550400 | MtrunA17_Chr5g0406391 | 30.612 | 294 | 189 | 6 | 9 | 299 | 2 | 283 | 7.07e-37 | 133 |
| Msa0550400 | MtrunA17_Chr5g0406501 | 30.872 | 298 | 184 | 11 | 11 | 301 | 3 | 285 | 9.43e-36 | 130 |
| Msa0550400 | MtrunA17_Chr5g0406401 | 29.831 | 295 | 190 | 8 | 9 | 299 | 2 | 283 | 1.35e-35 | 129 |
| Msa0550400 | MtrunA17_Chr5g0406511 | 30.743 | 296 | 190 | 8 | 7 | 299 | 1 | 284 | 1.96e-35 | 129 |
| Msa0550400 | MtrunA17_Chr5g0406561 | 29.392 | 296 | 194 | 7 | 9 | 299 | 2 | 287 | 7.55e-35 | 127 |
| Msa0550400 | MtrunA17_Chr5g0406481 | 30.743 | 296 | 190 | 8 | 7 | 299 | 1 | 284 | 1.24e-34 | 127 |
| Msa0550400 | MtrunA17_Chr5g0406371 | 30.537 | 298 | 182 | 11 | 9 | 299 | 2 | 281 | 1.88e-34 | 126 |
| Msa0550400 | MtrunA17_Chr8g0370861 | 31.596 | 307 | 175 | 9 | 4 | 301 | 3 | 283 | 5.97e-28 | 109 |
| Msa0550400 | MtrunA17_Chr5g0406631 | 30.519 | 308 | 189 | 7 | 9 | 301 | 8 | 305 | 9.59e-23 | 95.9 |
| Msa0550400 | MtrunA17_Chr1g0164671 | 32.900 | 231 | 126 | 8 | 72 | 301 | 24 | 226 | 6.82e-21 | 89.0 |
| Msa0550400 | MtrunA17_Chr5g0406471 | 31.313 | 198 | 119 | 6 | 105 | 301 | 4 | 185 | 4.77e-19 | 83.2 |
| Msa0550400 | MtrunA17_Chr3g0144771 | 48.684 | 76 | 39 | 0 | 1 | 76 | 1 | 76 | 3.43e-13 | 63.9 |
| Msa0550400 | MtrunA17_Chr3g0143741 | 26.144 | 306 | 197 | 11 | 9 | 299 | 23 | 314 | 3.74e-13 | 68.9 |
| Msa0550400 | MtrunA17_Chr5g0406441 | 32.673 | 101 | 66 | 1 | 10 | 108 | 2 | 102 | 1.95e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550400 | AT2G17080.1 | 40.625 | 288 | 137 | 9 | 16 | 301 | 8 | 263 | 4.09e-51 | 169 |
| Msa0550400 | AT2G17070.1 | 38.889 | 288 | 142 | 8 | 16 | 301 | 8 | 263 | 5.35e-51 | 169 |
| Msa0550400 | AT4G35210.1 | 39.223 | 283 | 132 | 9 | 16 | 298 | 8 | 250 | 4.34e-48 | 161 |
| Msa0550400 | AT4G35200.1 | 39.576 | 283 | 134 | 9 | 16 | 298 | 8 | 253 | 2.51e-47 | 159 |
| Msa0550400 | AT4G35690.1 | 34.783 | 299 | 163 | 11 | 13 | 301 | 8 | 284 | 4.20e-42 | 147 |
| Msa0550400 | AT4G35710.1 | 31.313 | 297 | 173 | 9 | 14 | 301 | 9 | 283 | 5.34e-29 | 112 |
| Msa0550400 | AT2G17680.1 | 29.967 | 307 | 167 | 11 | 16 | 300 | 11 | 291 | 1.05e-27 | 109 |
| Msa0550400 | AT4G35720.1 | 28.308 | 325 | 196 | 11 | 7 | 300 | 6 | 324 | 1.66e-20 | 90.1 |
| Msa0550400 | AT4G35680.1 | 29.299 | 314 | 197 | 11 | 4 | 301 | 6 | 310 | 5.93e-20 | 88.6 |
| Msa0550400 | AT1G76210.1 | 29.150 | 247 | 144 | 6 | 57 | 301 | 9 | 226 | 5.34e-19 | 84.3 |
| Msa0550400 | AT3G51400.1 | 29.902 | 204 | 129 | 4 | 100 | 300 | 82 | 274 | 1.10e-18 | 84.3 |
| Msa0550400 | AT4G35660.1 | 27.667 | 300 | 185 | 7 | 9 | 299 | 10 | 286 | 3.94e-15 | 74.7 |
| Msa0550400 | AT1G20520.1 | 26.506 | 249 | 152 | 6 | 54 | 300 | 6 | 225 | 8.94e-13 | 67.0 |
Find 49 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAACCAATTGGAAAATT+TGG | 0.112535 | 4_1:-45821840 | Msa0550400:CDS |
| TGAGAAAATTCTTGGCTTCT+AGG | 0.199154 | 4_1:-45822225 | Msa0550400:CDS |
| ATTTATACAACTAGTGATTA+AGG | 0.290293 | 4_1:+45821735 | None:intergenic |
| AATCGAAACCAAGTAATTAT+TGG | 0.313179 | 4_1:-45822006 | Msa0550400:CDS |
| GGCCGAGGTGAGAAAATTCT+TGG | 0.322610 | 4_1:-45822233 | Msa0550400:CDS |
| ACATGATTGCGTCGAAAGTT+TGG | 0.329591 | 4_1:-45822449 | Msa0550400:CDS |
| TGATGTGATGTTGGACTAAT+AGG | 0.335874 | 4_1:+45822613 | None:intergenic |
| ATTATCTCCTAGCAACAATA+AGG | 0.373881 | 4_1:-45822128 | Msa0550400:CDS |
| TCAAATTCTCCAAAGCTTTG+AGG | 0.381031 | 4_1:+45822182 | None:intergenic |
| CAATCATTTGCAGAACCAAT+TGG | 0.396017 | 4_1:-45821849 | Msa0550400:CDS |
| GAAAGCAATCCTCAAAGCTT+TGG | 0.399242 | 4_1:-45822191 | Msa0550400:CDS |
| CAAAGCTTTGGAGAATTTGA+AGG | 0.400637 | 4_1:-45822179 | Msa0550400:CDS |
| ACCAAGGACCAATAATTACT+TGG | 0.401947 | 4_1:+45821998 | None:intergenic |
| TCCACGCACGTCAAGAGAAA+TGG | 0.417810 | 4_1:-45822396 | Msa0550400:CDS |
| ACCAAGTAATTATTGGTCCT+TGG | 0.430617 | 4_1:-45821999 | Msa0550400:CDS |
| TTTAATCTTTATATCTGGAC+CGG | 0.469654 | 4_1:-45822032 | Msa0550400:CDS |
| ATCAACTCTTCATCGTTGTT+CGG | 0.473180 | 4_1:-45822499 | Msa0550400:CDS |
| TTGCTACAGAACACACATCT+AGG | 0.484586 | 4_1:+45822341 | None:intergenic |
| GTCTGTTGTTCAAGGGTTTG+TGG | 0.488801 | 4_1:-45821816 | Msa0550400:CDS |
| AGTGATCACTCTTTCAATGT+TGG | 0.496374 | 4_1:-45822062 | Msa0550400:CDS |
| ACAAGGACTTGTTGAGTAAG+AGG | 0.502400 | 4_1:+45822418 | None:intergenic |
| ATTTGGAGTCTGTTGTTCAA+GGG | 0.504312 | 4_1:-45821823 | Msa0550400:CDS |
| CGAAATGGAGGTGACGGCCG+AGG | 0.520093 | 4_1:-45822248 | Msa0550400:CDS |
| AAAATTCTTGGCTTCTAGGA+AGG | 0.521847 | 4_1:-45822221 | Msa0550400:CDS |
| TCTCTTGACGTGCGTGGACA+AGG | 0.524756 | 4_1:+45822401 | None:intergenic |
| TCATGATCCTTATTGTTGCT+AGG | 0.526232 | 4_1:+45822121 | None:intergenic |
| TTGAAGGCTAATGTGAAGAA+AGG | 0.526883 | 4_1:-45822163 | Msa0550400:CDS |
| GCTAATGTGAAGAAAGGTAA+AGG | 0.528831 | 4_1:-45822157 | Msa0550400:CDS |
| GCTTATGATGCAGAACAAGA+AGG | 0.533958 | 4_1:-45821969 | Msa0550400:CDS |
| AATTTGGAGTCTGTTGTTCA+AGG | 0.538470 | 4_1:-45821824 | Msa0550400:CDS |
| TCCATTTCTCTTGACGTGCG+TGG | 0.539554 | 4_1:+45822395 | None:intergenic |
| CATTGTAGAATGAGAGGGTG+TGG | 0.553149 | 4_1:+45822559 | None:intergenic |
| CGAGGTTGGTGATGTGATGT+TGG | 0.563264 | 4_1:+45822604 | None:intergenic |
| AGGAGGCGAAATGGAGGTGA+CGG | 0.564930 | 4_1:-45822254 | Msa0550400:CDS |
| ATGAGAGGGTGTGGTTTCGA+TGG | 0.575082 | 4_1:+45822568 | None:intergenic |
| GAAGAGTTGATTGCGTCGAA+AGG | 0.582245 | 4_1:+45822511 | None:intergenic |
| TCTACAATGCAATCAACACT+TGG | 0.582703 | 4_1:-45822545 | Msa0550400:CDS |
| AGATGTGTGTTCTGTAGCAA+AGG | 0.585332 | 4_1:-45822338 | Msa0550400:CDS |
| CATCATAAGCTTTGAAACCA+AGG | 0.589484 | 4_1:+45821982 | None:intergenic |
| AGTGATTAAGGACATTGAGA+AGG | 0.590750 | 4_1:+45821747 | None:intergenic |
| GTGATTAAGGACATTGAGAA+GGG | 0.597371 | 4_1:+45821748 | None:intergenic |
| TTACTTGGTTTCGATTGCGC+CGG | 0.602841 | 4_1:+45822013 | None:intergenic |
| GGTTAGTTTGTTAAGAGACG+TGG | 0.607951 | 4_1:-45822086 | Msa0550400:CDS |
| TGATTGCATTGTAGAATGAG+AGG | 0.610266 | 4_1:+45822553 | None:intergenic |
| ATCATGTAAAGCTTGTAGAT+CGG | 0.622289 | 4_1:+45822465 | None:intergenic |
| GGATTCTCTAATTCATACGA+AGG | 0.644514 | 4_1:-45822317 | Msa0550400:CDS |
| TGATGTTGGACTAATAGGAA+TGG | 0.654192 | 4_1:+45822618 | None:intergenic |
| AGATCCGTCTAAAAGCTCAT+CGG | 0.663380 | 4_1:+45822372 | None:intergenic |
| GATTGCATTGTAGAATGAGA+GGG | 0.668472 | 4_1:+45822554 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCACTTTTAATCTTTATATC+TGG | - | chr4_1:45822336-45822355 | Msa0550400:CDS | 20.0% |
| !!! | TCACTTTTAATCTTTATATC+TGG | - | chr4_1:45822336-45822355 | Msa0550400:CDS | 20.0% |
| ! | TTTAATCTTTATATCTGGAC+CGG | - | chr4_1:45822341-45822360 | Msa0550400:CDS | 25.0% |
| ! | AATCGAAACCAAGTAATTAT+TGG | - | chr4_1:45822367-45822386 | Msa0550400:CDS | 25.0% |
| ! | TTTAATCTTTATATCTGGAC+CGG | - | chr4_1:45822341-45822360 | Msa0550400:CDS | 25.0% |
| ! | AATCGAAACCAAGTAATTAT+TGG | - | chr4_1:45822367-45822386 | Msa0550400:CDS | 25.0% |
| ATCATGTAAAGCTTGTAGAT+CGG | + | chr4_1:45821911-45821930 | None:intergenic | 30.0% | |
| ATTATCTCCTAGCAACAATA+AGG | - | chr4_1:45822245-45822264 | Msa0550400:CDS | 30.0% | |
| ATCATGTAAAGCTTGTAGAT+CGG | + | chr4_1:45821911-45821930 | None:intergenic | 30.0% | |
| ATTATCTCCTAGCAACAATA+AGG | - | chr4_1:45822245-45822264 | Msa0550400:CDS | 30.0% | |
| TGATGTTGGACTAATAGGAA+TGG | + | chr4_1:45821758-45821777 | None:intergenic | 35.0% | |
| TGATGTGATGTTGGACTAAT+AGG | + | chr4_1:45821763-45821782 | None:intergenic | 35.0% | |
| GATTGCATTGTAGAATGAGA+GGG | + | chr4_1:45821822-45821841 | None:intergenic | 35.0% | |
| TGATTGCATTGTAGAATGAG+AGG | + | chr4_1:45821823-45821842 | None:intergenic | 35.0% | |
| TCTACAATGCAATCAACACT+TGG | - | chr4_1:45821828-45821847 | Msa0550400:CDS | 35.0% | |
| ATCAACTCTTCATCGTTGTT+CGG | - | chr4_1:45821874-45821893 | Msa0550400:CDS | 35.0% | |
| ! | AGCTTTTAGACGGATCTTTA+AGG | - | chr4_1:45822007-45822026 | Msa0550400:CDS | 35.0% |
| GGATTCTCTAATTCATACGA+AGG | - | chr4_1:45822056-45822075 | Msa0550400:CDS | 35.0% | |
| TCGATTATGCGAAGAAAAAG+AGG | - | chr4_1:45822099-45822118 | Msa0550400:CDS | 35.0% | |
| ATTATGCGAAGAAAAAGAGG+AGG | - | chr4_1:45822102-45822121 | Msa0550400:CDS | 35.0% | |
| TGAGAAAATTCTTGGCTTCT+AGG | - | chr4_1:45822148-45822167 | Msa0550400:CDS | 35.0% | |
| ! | AAAATTCTTGGCTTCTAGGA+AGG | - | chr4_1:45822152-45822171 | Msa0550400:CDS | 35.0% |
| TCAAATTCTCCAAAGCTTTG+AGG | + | chr4_1:45822194-45822213 | None:intergenic | 35.0% | |
| !! | CAAAGCTTTGGAGAATTTGA+AGG | - | chr4_1:45822194-45822213 | Msa0550400:CDS | 35.0% |
| TTGAAGGCTAATGTGAAGAA+AGG | - | chr4_1:45822210-45822229 | Msa0550400:CDS | 35.0% | |
| GCTAATGTGAAGAAAGGTAA+AGG | - | chr4_1:45822216-45822235 | Msa0550400:CDS | 35.0% | |
| TCATGATCCTTATTGTTGCT+AGG | + | chr4_1:45822255-45822274 | None:intergenic | 35.0% | |
| GGATCATGAAAAAGTGACTT+TGG | - | chr4_1:45822266-45822285 | Msa0550400:CDS | 35.0% | |
| AGTGATCACTCTTTCAATGT+TGG | - | chr4_1:45822311-45822330 | Msa0550400:CDS | 35.0% | |
| ACCAAGTAATTATTGGTCCT+TGG | - | chr4_1:45822374-45822393 | Msa0550400:CDS | 35.0% | |
| ACCAAGGACCAATAATTACT+TGG | + | chr4_1:45822378-45822397 | None:intergenic | 35.0% | |
| !! | CATCATAAGCTTTGAAACCA+AGG | + | chr4_1:45822394-45822413 | None:intergenic | 35.0% |
| CAATCATTTGCAGAACCAAT+TGG | - | chr4_1:45822524-45822543 | Msa0550400:CDS | 35.0% | |
| GCAGAACCAATTGGAAAATT+TGG | - | chr4_1:45822533-45822552 | Msa0550400:CDS | 35.0% | |
| ! | CAGACTCCAAATTTTCCAAT+TGG | + | chr4_1:45822542-45822561 | None:intergenic | 35.0% |
| ! | AATTTGGAGTCTGTTGTTCA+AGG | - | chr4_1:45822549-45822568 | Msa0550400:CDS | 35.0% |
| ! | ATTTGGAGTCTGTTGTTCAA+GGG | - | chr4_1:45822550-45822569 | Msa0550400:CDS | 35.0% |
| GTGATTAAGGACATTGAGAA+GGG | + | chr4_1:45822628-45822647 | None:intergenic | 35.0% | |
| AGTGATTAAGGACATTGAGA+AGG | + | chr4_1:45822629-45822648 | None:intergenic | 35.0% | |
| TGATGTTGGACTAATAGGAA+TGG | + | chr4_1:45821758-45821777 | None:intergenic | 35.0% | |
| TGATGTGATGTTGGACTAAT+AGG | + | chr4_1:45821763-45821782 | None:intergenic | 35.0% | |
| GATTGCATTGTAGAATGAGA+GGG | + | chr4_1:45821822-45821841 | None:intergenic | 35.0% | |
| TGATTGCATTGTAGAATGAG+AGG | + | chr4_1:45821823-45821842 | None:intergenic | 35.0% | |
| TCTACAATGCAATCAACACT+TGG | - | chr4_1:45821828-45821847 | Msa0550400:CDS | 35.0% | |
| ATCAACTCTTCATCGTTGTT+CGG | - | chr4_1:45821874-45821893 | Msa0550400:CDS | 35.0% | |
| ! | AGCTTTTAGACGGATCTTTA+AGG | - | chr4_1:45822007-45822026 | Msa0550400:CDS | 35.0% |
| GGATTCTCTAATTCATACGA+AGG | - | chr4_1:45822056-45822075 | Msa0550400:CDS | 35.0% | |
| TCGATTATGCGAAGAAAAAG+AGG | - | chr4_1:45822099-45822118 | Msa0550400:CDS | 35.0% | |
| ATTATGCGAAGAAAAAGAGG+AGG | - | chr4_1:45822102-45822121 | Msa0550400:CDS | 35.0% | |
| TGAGAAAATTCTTGGCTTCT+AGG | - | chr4_1:45822148-45822167 | Msa0550400:CDS | 35.0% | |
| ! | AAAATTCTTGGCTTCTAGGA+AGG | - | chr4_1:45822152-45822171 | Msa0550400:CDS | 35.0% |
| TCAAATTCTCCAAAGCTTTG+AGG | + | chr4_1:45822194-45822213 | None:intergenic | 35.0% | |
| !! | CAAAGCTTTGGAGAATTTGA+AGG | - | chr4_1:45822194-45822213 | Msa0550400:CDS | 35.0% |
| TTGAAGGCTAATGTGAAGAA+AGG | - | chr4_1:45822210-45822229 | Msa0550400:CDS | 35.0% | |
| GCTAATGTGAAGAAAGGTAA+AGG | - | chr4_1:45822216-45822235 | Msa0550400:CDS | 35.0% | |
| TCATGATCCTTATTGTTGCT+AGG | + | chr4_1:45822255-45822274 | None:intergenic | 35.0% | |
| GGATCATGAAAAAGTGACTT+TGG | - | chr4_1:45822266-45822285 | Msa0550400:CDS | 35.0% | |
| AGTGATCACTCTTTCAATGT+TGG | - | chr4_1:45822311-45822330 | Msa0550400:CDS | 35.0% | |
| ACCAAGTAATTATTGGTCCT+TGG | - | chr4_1:45822374-45822393 | Msa0550400:CDS | 35.0% | |
| ACCAAGGACCAATAATTACT+TGG | + | chr4_1:45822378-45822397 | None:intergenic | 35.0% | |
| !! | CATCATAAGCTTTGAAACCA+AGG | + | chr4_1:45822394-45822413 | None:intergenic | 35.0% |
| CAATCATTTGCAGAACCAAT+TGG | - | chr4_1:45822524-45822543 | Msa0550400:CDS | 35.0% | |
| GCAGAACCAATTGGAAAATT+TGG | - | chr4_1:45822533-45822552 | Msa0550400:CDS | 35.0% | |
| ! | CAGACTCCAAATTTTCCAAT+TGG | + | chr4_1:45822542-45822561 | None:intergenic | 35.0% |
| ! | AATTTGGAGTCTGTTGTTCA+AGG | - | chr4_1:45822549-45822568 | Msa0550400:CDS | 35.0% |
| ! | ATTTGGAGTCTGTTGTTCAA+GGG | - | chr4_1:45822550-45822569 | Msa0550400:CDS | 35.0% |
| GTGATTAAGGACATTGAGAA+GGG | + | chr4_1:45822628-45822647 | None:intergenic | 35.0% | |
| AGTGATTAAGGACATTGAGA+AGG | + | chr4_1:45822629-45822648 | None:intergenic | 35.0% | |
| ACATGATTGCGTCGAAAGTT+TGG | - | chr4_1:45821924-45821943 | Msa0550400:CDS | 40.0% | |
| !! | ACAAGGACTTGTTGAGTAAG+AGG | + | chr4_1:45821958-45821977 | None:intergenic | 40.0% |
| AGATCCGTCTAAAAGCTCAT+CGG | + | chr4_1:45822004-45822023 | None:intergenic | 40.0% | |
| TTGCTACAGAACACACATCT+AGG | + | chr4_1:45822035-45822054 | None:intergenic | 40.0% | |
| AGATGTGTGTTCTGTAGCAA+AGG | - | chr4_1:45822035-45822054 | Msa0550400:CDS | 40.0% | |
| AAGAAAAAGAGGAGGCGAAA+TGG | - | chr4_1:45822110-45822129 | Msa0550400:CDS | 40.0% | |
| ! | AGCCAAGAATTTTCTCACCT+CGG | + | chr4_1:45822145-45822164 | None:intergenic | 40.0% |
| GAAAGCAATCCTCAAAGCTT+TGG | - | chr4_1:45822182-45822201 | Msa0550400:CDS | 40.0% | |
| !! | GGTTAGTTTGTTAAGAGACG+TGG | - | chr4_1:45822287-45822306 | Msa0550400:CDS | 40.0% |
| GCTTATGATGCAGAACAAGA+AGG | - | chr4_1:45822404-45822423 | Msa0550400:CDS | 40.0% | |
| ACATGATTGCGTCGAAAGTT+TGG | - | chr4_1:45821924-45821943 | Msa0550400:CDS | 40.0% | |
| !! | ACAAGGACTTGTTGAGTAAG+AGG | + | chr4_1:45821958-45821977 | None:intergenic | 40.0% |
| AGATCCGTCTAAAAGCTCAT+CGG | + | chr4_1:45822004-45822023 | None:intergenic | 40.0% | |
| TTGCTACAGAACACACATCT+AGG | + | chr4_1:45822035-45822054 | None:intergenic | 40.0% | |
| AGATGTGTGTTCTGTAGCAA+AGG | - | chr4_1:45822035-45822054 | Msa0550400:CDS | 40.0% | |
| AAGAAAAAGAGGAGGCGAAA+TGG | - | chr4_1:45822110-45822129 | Msa0550400:CDS | 40.0% | |
| ! | AGCCAAGAATTTTCTCACCT+CGG | + | chr4_1:45822145-45822164 | None:intergenic | 40.0% |
| GAAAGCAATCCTCAAAGCTT+TGG | - | chr4_1:45822182-45822201 | Msa0550400:CDS | 40.0% | |
| !! | GGTTAGTTTGTTAAGAGACG+TGG | - | chr4_1:45822287-45822306 | Msa0550400:CDS | 40.0% |
| GCTTATGATGCAGAACAAGA+AGG | - | chr4_1:45822404-45822423 | Msa0550400:CDS | 40.0% | |
| CATTGTAGAATGAGAGGGTG+TGG | + | chr4_1:45821817-45821836 | None:intergenic | 45.0% | |
| ! | GAAGAGTTGATTGCGTCGAA+AGG | + | chr4_1:45821865-45821884 | None:intergenic | 45.0% |
| ! | TGGACCGATGAGCTTTTAGA+CGG | - | chr4_1:45821997-45822016 | Msa0550400:CDS | 45.0% |
| AAAAAGAGGAGGCGAAATGG+AGG | - | chr4_1:45822113-45822132 | Msa0550400:CDS | 45.0% | |
| TTACTTGGTTTCGATTGCGC+CGG | + | chr4_1:45822363-45822382 | None:intergenic | 45.0% | |
| GTCTGTTGTTCAAGGGTTTG+TGG | - | chr4_1:45822557-45822576 | Msa0550400:CDS | 45.0% | |
| CATTGTAGAATGAGAGGGTG+TGG | + | chr4_1:45821817-45821836 | None:intergenic | 45.0% | |
| ! | GAAGAGTTGATTGCGTCGAA+AGG | + | chr4_1:45821865-45821884 | None:intergenic | 45.0% |
| ! | TGGACCGATGAGCTTTTAGA+CGG | - | chr4_1:45821997-45822016 | Msa0550400:CDS | 45.0% |
| AAAAAGAGGAGGCGAAATGG+AGG | - | chr4_1:45822113-45822132 | Msa0550400:CDS | 45.0% | |
| TTACTTGGTTTCGATTGCGC+CGG | + | chr4_1:45822363-45822382 | None:intergenic | 45.0% | |
| GTCTGTTGTTCAAGGGTTTG+TGG | - | chr4_1:45822557-45822576 | Msa0550400:CDS | 45.0% | |
| !! | CGAGGTTGGTGATGTGATGT+TGG | + | chr4_1:45821772-45821791 | None:intergenic | 50.0% |
| ! | ATGAGAGGGTGTGGTTTCGA+TGG | + | chr4_1:45821808-45821827 | None:intergenic | 50.0% |
| TCCACGCACGTCAAGAGAAA+TGG | - | chr4_1:45821977-45821996 | Msa0550400:CDS | 50.0% | |
| TCCATTTCTCTTGACGTGCG+TGG | + | chr4_1:45821981-45822000 | None:intergenic | 50.0% | |
| GGCCGAGGTGAGAAAATTCT+TGG | - | chr4_1:45822140-45822159 | Msa0550400:CDS | 50.0% | |
| !! | CGAGGTTGGTGATGTGATGT+TGG | + | chr4_1:45821772-45821791 | None:intergenic | 50.0% |
| ! | ATGAGAGGGTGTGGTTTCGA+TGG | + | chr4_1:45821808-45821827 | None:intergenic | 50.0% |
| TCCACGCACGTCAAGAGAAA+TGG | - | chr4_1:45821977-45821996 | Msa0550400:CDS | 50.0% | |
| TCCATTTCTCTTGACGTGCG+TGG | + | chr4_1:45821981-45822000 | None:intergenic | 50.0% | |
| GGCCGAGGTGAGAAAATTCT+TGG | - | chr4_1:45822140-45822159 | Msa0550400:CDS | 50.0% | |
| !! | GCAAGCTTTTCGAGCGAGGT+TGG | + | chr4_1:45821786-45821805 | None:intergenic | 55.0% |
| !! | GATGGCAAGCTTTTCGAGCG+AGG | + | chr4_1:45821790-45821809 | None:intergenic | 55.0% |
| TCTCTTGACGTGCGTGGACA+AGG | + | chr4_1:45821975-45821994 | None:intergenic | 55.0% | |
| AGGAGGCGAAATGGAGGTGA+CGG | - | chr4_1:45822119-45822138 | Msa0550400:CDS | 55.0% | |
| !! | GCAAGCTTTTCGAGCGAGGT+TGG | + | chr4_1:45821786-45821805 | None:intergenic | 55.0% |
| !! | GATGGCAAGCTTTTCGAGCG+AGG | + | chr4_1:45821790-45821809 | None:intergenic | 55.0% |
| TCTCTTGACGTGCGTGGACA+AGG | + | chr4_1:45821975-45821994 | None:intergenic | 55.0% | |
| AGGAGGCGAAATGGAGGTGA+CGG | - | chr4_1:45822119-45822138 | Msa0550400:CDS | 55.0% | |
| ! | CGAAATGGAGGTGACGGCCG+AGG | - | chr4_1:45822125-45822144 | Msa0550400:CDS | 65.0% |
| ! | CGAAATGGAGGTGACGGCCG+AGG | - | chr4_1:45822125-45822144 | Msa0550400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45821745 | 45822650 | 45821745 | ID=Msa0550400;Name=Msa0550400 |
| chr4_1 | mRNA | 45821745 | 45822650 | 45821745 | ID=Msa0550400-mRNA-1;Parent=Msa0550400;Name=Msa0550400-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|301 |
| chr4_1 | exon | 45821745 | 45822650 | 45821745 | ID=Msa0550400-mRNA-1:exon:12136;Parent=Msa0550400-mRNA-1 |
| chr4_1 | CDS | 45821745 | 45822650 | 45821745 | ID=Msa0550400-mRNA-1:cds;Parent=Msa0550400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
