AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094960 MtrunA17_Chr2g0332541 98.660 373 5 0 1 373 1 373 0.0 764
Msa0094960 MtrunA17_Chr1g0149051 68.661 351 104 2 20 369 31 376 0.0 508
Msa0094960 MtrunA17_Chr3g0089391 50.595 336 160 2 26 361 32 361 6.07e-119 349
Msa0094960 MtrunA17_Chr4g0019601 50.599 334 159 2 28 361 37 364 3.67e-115 339
Msa0094960 MtrunA17_Chr4g0019581 50.000 334 161 2 28 361 106 433 3.22e-114 339
Msa0094960 MtrunA17_Chr2g0286051 45.706 361 188 2 3 363 13 365 6.28e-113 334
Msa0094960 MtrunA17_Chr4g0019571 45.810 358 188 2 4 361 13 364 2.87e-110 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094960 AT5G11420.1 65.014 363 122 1 7 369 9 366 0.0 510
Msa0094960 AT5G25460.1 65.301 366 122 1 4 369 9 369 1.21e-180 506
Msa0094960 AT4G32460.2 64.865 370 124 2 1 369 1 365 2.57e-178 500
Msa0094960 AT4G32460.1 64.865 370 124 2 1 369 1 365 2.57e-178 500
Msa0094960 AT1G80240.1 66.570 344 110 1 23 366 27 365 2.35e-169 477
Msa0094960 AT4G32460.4 67.273 330 103 1 40 369 1 325 2.54e-165 465
Msa0094960 AT4G32460.3 67.273 330 103 1 40 369 1 325 2.54e-165 465
Msa0094960 AT3G08030.1 52.149 349 160 2 15 361 16 359 1.26e-122 358
Msa0094960 AT2G41800.1 48.611 360 173 2 15 367 16 370 1.27e-120 353
Msa0094960 AT2G41810.1 47.011 368 183 2 4 364 5 367 2.41e-118 348
Msa0094960 AT3G08030.2 53.106 322 146 1 40 361 1 317 2.14e-116 341
Msa0094960 AT2G34510.1 47.801 341 178 0 23 363 38 378 7.66e-113 335
Msa0094960 AT1G29980.1 44.928 345 186 1 23 363 38 382 3.72e-108 323
Msa0094960 AT1G29980.2 44.767 344 186 1 24 363 3 346 8.43e-108 321
Msa0094960 AT2G34510.2 47.945 292 152 0 72 363 1 292 1.59e-97 293
Msa0094960 AT5G14150.2 31.746 378 212 14 5 363 7 357 6.73e-43 154
Msa0094960 AT5G14150.1 31.746 378 212 14 5 363 7 357 6.73e-43 154

Find 95 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTAGGTTTGATGCTTT+TGG 0.196530 1_2:+78373463 None:intergenic
TCAAGTTCCTTATCAATCTA+AGG 0.227907 1_2:-78372109 Msa0094960:CDS
TTGTCACTACTGTGCCCTTT+AGG 0.246643 1_2:+78373449 None:intergenic
TGGATAACAATTTCCCCTTC+TGG 0.270997 1_2:+78373094 None:intergenic
AAATTACCTCTGGTTCTTCT+AGG 0.274083 1_2:+78372998 None:intergenic
TATTGATTCTGTTGCCTTGA+AGG 0.280632 1_2:-78373032 Msa0094960:CDS
CCCATGATGCCATACCTAAT+TGG 0.285226 1_2:-78373426 Msa0094960:CDS
ATACCTAATTGGACAGTTTC+AGG 0.305431 1_2:-78373415 Msa0094960:CDS
CAAAAGGTGAAATTAAATAA+AGG 0.320615 1_2:-78373289 Msa0094960:CDS
TATCCTGAAACTGTCCAATT+AGG 0.329626 1_2:+78373412 None:intergenic
AAAACAAGGTGACATGCTTT+TGG 0.342997 1_2:-78373365 Msa0094960:CDS
ACTTCTGAGAAAAGAGATTA+TGG 0.344578 1_2:-78373190 Msa0094960:CDS
CAAGAAGTCTTCACCACAAT+TGG 0.356227 1_2:-78372225 Msa0094960:CDS
AATACTCCCCATGATGCATT+TGG 0.357606 1_2:+78372402 None:intergenic
ACCAGAGTTATCATTCTTCA+TGG 0.360617 1_2:+78372002 None:intergenic
ATTACTTAGGTATGCTTGTT+GGG 0.366782 1_2:+78371928 None:intergenic
CATTACTTAGGTATGCTTGT+TGG 0.371408 1_2:+78371927 None:intergenic
GATAACTCTGGTTCTCTTTG+TGG 0.379593 1_2:-78371991 Msa0094960:CDS
GGCAAAGGAGGGTTTGTTAG+AGG 0.380600 1_2:-78372087 Msa0094960:CDS
TCCAATTAGGTATGGCATCA+TGG 0.399317 1_2:+78373425 None:intergenic
TTCAATACGTGGCAATACTA+TGG 0.407527 1_2:-78371714 Msa0094960:three_prime_UTR
CATCTTCAACACCAGAGTTA+TGG 0.410007 1_2:+78373074 None:intergenic
CTAACAGCATAAGCACCTTC+TGG 0.410744 1_2:+78373337 None:intergenic
AAAAGGTGAAATTAAATAAA+GGG 0.413489 1_2:-78373288 Msa0094960:CDS
CAGAAGGTGCTTATGCTGTT+AGG 0.416893 1_2:-78373336 Msa0094960:CDS
GTTGGGAATCATTTGCTTGT+GGG 0.420479 1_2:-78373132 Msa0094960:CDS
CTACCATACATAGTCTGTAT+TGG 0.420768 1_2:+78373160 None:intergenic
CGACAAGACGTACTAGGATT+AGG 0.425557 1_2:-78372044 Msa0094960:CDS
TTTGATTTGCAACATTACTT+AGG 0.436219 1_2:+78371915 None:intergenic
CTTTCAGGTTTATTGCCAAA+TGG 0.445556 1_2:-78373502 Msa0094960:intron
TACGTTGAATACATAAAATC+AGG 0.449032 1_2:-78373391 Msa0094960:CDS
CCAACTTCAAAGTCACCATT+TGG 0.454460 1_2:+78373487 None:intergenic
TCATGGTGTAAAATGTACTT+AGG 0.454825 1_2:+78372019 None:intergenic
GATGCATTTGGGAACACATA+TGG 0.455308 1_2:+78372414 None:intergenic
AGGCTACGACAAGACGTACT+AGG 0.457315 1_2:-78372050 Msa0094960:CDS
TCAACTATCCATCCTGGTAA+TGG 0.458492 1_2:+78372348 None:intergenic
ATACTCCCCATGATGCATTT+GGG 0.460441 1_2:+78372403 None:intergenic
ATGACTGTAGAAGCATTTGC+TGG 0.463295 1_2:-78372144 Msa0094960:CDS
CCTTTGCCCTTAGATTGATA+AGG 0.464510 1_2:+78372102 None:intergenic
TACCTCTGGTTCTTCTAGGT+GGG 0.470065 1_2:+78373002 None:intergenic
AGAGCAATTGAACTTGTAGC+AGG 0.483311 1_2:-78372267 Msa0094960:CDS
TGAAGCATACATTAAACAAA+AGG 0.487173 1_2:-78373305 Msa0094960:CDS
CCAAAAGCATCAAACCTAAA+GGG 0.488419 1_2:-78373463 Msa0094960:CDS
GATGCTCATGGTCCATTACC+AGG 0.489743 1_2:-78372360 Msa0094960:CDS
TCAATAAGTGGGCCACAAGC+TGG 0.490288 1_2:+78373049 None:intergenic
CCAAATGGTGACTTTGAAGT+TGG 0.493192 1_2:-78373487 Msa0094960:CDS
ATGTGTTCCCAAATGCATCA+TGG 0.495027 1_2:-78372410 Msa0094960:CDS
ATTCCAATACAGACTATGTA+TGG 0.495208 1_2:-78373163 Msa0094960:CDS
TCCAAAAGCATCAAACCTAA+AGG 0.497345 1_2:-78373464 Msa0094960:CDS
CCAATTAGGTATGGCATCAT+GGG 0.500399 1_2:+78373426 None:intergenic
AGGTGGGTTCAAAACCTTCA+AGG 0.507765 1_2:+78373018 None:intergenic
GGTTGGGAATCATTTGCTTG+TGG 0.513196 1_2:-78373133 Msa0094960:CDS
TATGTATGGTAGCAATGGTT+GGG 0.515899 1_2:-78373149 Msa0094960:CDS
TGTGTTCCCAAATGCATCAT+GGG 0.517111 1_2:-78372409 Msa0094960:CDS
CAAGTTCCTTATCAATCTAA+GGG 0.522342 1_2:-78372108 Msa0094960:CDS
ATTCTTGTAATAATATAGCT+AGG 0.528543 1_2:-78371834 Msa0094960:three_prime_UTR
TTACCTCTGGTTCTTCTAGG+TGG 0.537982 1_2:+78373001 None:intergenic
AGAGATTCAACTATCCATCC+TGG 0.540762 1_2:+78372342 None:intergenic
CTATGTATGGTAGCAATGGT+TGG 0.542393 1_2:-78373150 Msa0094960:CDS
GAAATTGTTATCCATAACTC+TGG 0.550258 1_2:-78373085 Msa0094960:CDS
GGTGCTTTGTCTTATACAGA+TGG 0.550446 1_2:-78376222 Msa0094960:intron
AAGGCAACAGAATCAATAAG+TGG 0.552750 1_2:+78373037 None:intergenic
TGAAACTGTCCAATTAGGTA+TGG 0.554450 1_2:+78373417 None:intergenic
TATCAATCTAAGGGCAAAGG+AGG 0.558454 1_2:-78372099 Msa0094960:CDS
ATACTCAACGAGATGGATGA+TGG 0.558720 1_2:+78371878 None:intergenic
AAAATGTAACAATGAGACAT+TGG 0.564498 1_2:+78371669 None:intergenic
TTTAGAGCTGATTATCCAGA+AGG 0.574156 1_2:-78373109 Msa0094960:CDS
CCTTATCAATCTAAGGGCAA+AGG 0.577087 1_2:-78372102 Msa0094960:CDS
GGTGCTTATGCTGTTAGGCT+AGG 0.577781 1_2:-78373331 Msa0094960:CDS
CAGACTATGTATGGTAGCAA+TGG 0.586345 1_2:-78373154 Msa0094960:CDS
CTGTATAAGACAAAGCACCT+TGG 0.586814 1_2:+78376226 None:intergenic
CTCATGGTCCATTACCAGGA+TGG 0.588455 1_2:-78372356 Msa0094960:CDS
GTTGAAGATGATCCAGCTTG+TGG 0.588645 1_2:-78373061 Msa0094960:CDS
ATTGATCCCACCACACATTG+AGG 0.605497 1_2:-78372382 Msa0094960:CDS
TAGAGCTGATTATCCAGAAG+GGG 0.606448 1_2:-78373107 Msa0094960:CDS
ATCAATCTAAGGGCAAAGGA+GGG 0.607832 1_2:-78372098 Msa0094960:CDS
GAGCATCCTCAATGTGTGGT+GGG 0.618690 1_2:+78372376 None:intergenic
AGAGAAGCTTAATGTGTCAG+TGG 0.619453 1_2:-78373218 Msa0094960:CDS
GAGCAATTGAACTTGTAGCA+GGG 0.620186 1_2:-78372266 Msa0094960:CDS
CCACACATTGAGGATGCTCA+TGG 0.621467 1_2:-78372372 Msa0094960:CDS
TTAGAGCTGATTATCCAGAA+GGG 0.629847 1_2:-78373108 Msa0094960:CDS
ATATTCCTCTCAATATGCCA+AGG 0.634379 1_2:-78376243 Msa0094960:CDS
AGGCAACAGAATCAATAAGT+GGG 0.639484 1_2:+78373038 None:intergenic
AAGCACCTTGGCATATTGAG+AGG 0.644905 1_2:+78376238 None:intergenic
TGAGCATCCTCAATGTGTGG+TGG 0.646759 1_2:+78372375 None:intergenic
GCGAGCTGCACTGAACGTGA+TGG 0.648755 1_2:+78373255 None:intergenic
GAACACTTCACAGTACCAGA+AGG 0.657571 1_2:-78372294 Msa0094960:CDS
CATCACCAACTGCAAAAGTG+AGG 0.664865 1_2:+78372190 None:intergenic
GATGCTAATAATGCATGTGA+AGG 0.670003 1_2:-78372171 Msa0094960:CDS
GTGTTCCCAAATGCATCATG+GGG 0.678543 1_2:-78372408 Msa0094960:CDS
ATGTTGCAAATCAAAATGCA+TGG 0.681924 1_2:-78371907 Msa0094960:three_prime_UTR
ACCATGAAGAATGATAACTC+TGG 0.691442 1_2:-78372003 Msa0094960:CDS
CCATGAGCATCCTCAATGTG+TGG 0.691876 1_2:+78372372 None:intergenic
AACCCACCTAGAAGAACCAG+AGG 0.693541 1_2:-78373004 Msa0094960:intron
ATGAGAAGTATTTCAATACG+TGG 0.697286 1_2:-78371725 Msa0094960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAAAAAAAAAAATTACAT+TGG + chr1_2:78371826-78371845 None:intergenic 10.0%
!!! CAATGTAATTTTTTTTTTTA+AGG - chr1_2:78371824-78371843 Msa0094960:three_prime_UTR 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG + chr1_2:78372236-78372255 None:intergenic 10.0%
!!! AATGTTATTATTTATTTTAG+AGG - chr1_2:78372631-78372650 Msa0094960:intron 10.0%
!!! TTTTTATTTTTGTTTTTTTC+AGG + chr1_2:78372836-78372855 None:intergenic 10.0%
!! TTAAGAAAAATGTATAAATA+AGG - chr1_2:78372912-78372931 Msa0094960:intron 10.0%
!! TAAGAAAAATGTATAAATAA+GGG - chr1_2:78372913-78372932 Msa0094960:intron 10.0%
!! TAAATGTAAAATTACATAAA+AGG - chr1_2:78373120-78373139 Msa0094960:CDS 10.0%
!! ACATAAATTGAAAAACATAA+GGG + chr1_2:78372039-78372058 None:intergenic 15.0%
!!! TATTGAATGTAAAGTTATTT+TGG + chr1_2:78372453-78372472 None:intergenic 15.0%
!! TAATTTATTTAGATATTCGT+AGG - chr1_2:78372770-78372789 Msa0094960:intron 15.0%
!! AATTTATTTAGATATTCGTA+GGG - chr1_2:78372771-78372790 Msa0094960:intron 15.0%
!! AAGAAAAATGTATAAATAAG+GGG - chr1_2:78372914-78372933 Msa0094960:intron 15.0%
!! TTTCATTAAAATAACTGAAA+TGG + chr1_2:78373337-78373356 None:intergenic 15.0%
!!! AAATGTGTTTTACTATATAA+AGG - chr1_2:78373441-78373460 Msa0094960:CDS 15.0%
!!! AATGTGTTTTACTATATAAA+GGG - chr1_2:78373442-78373461 Msa0094960:CDS 15.0%
!!! CAACTTTTATTTATATATCT+AGG - chr1_2:78374306-78374325 Msa0094960:intron 15.0%
!!! GAAAGAATTTTAAATTGATA+AGG + chr1_2:78374479-78374498 None:intergenic 15.0%
!!! TATCAATTTAAAATTCTTTC+AGG - chr1_2:78374479-78374498 Msa0094960:intron 15.0%
!! AAAAGGTGAAATTAAATAAA+GGG - chr1_2:78374708-78374727 Msa0094960:intron 15.0%
!! ACAAAAATATTCAATCATAT+TGG + chr1_2:78375405-78375424 None:intergenic 15.0%
!!! TTGAATATTTTTGTACATTA+TGG - chr1_2:78375411-78375430 Msa0094960:intron 15.0%
!! TTGATGTATGAAATTAAATT+TGG - chr1_2:78375486-78375505 Msa0094960:intron 15.0%
!!! CTTTTAAGTAAGTAAACATT+TGG + chr1_2:78371964-78371983 None:intergenic 20.0%
!! ACTTAAAAGTTTAACATTGA+TGG - chr1_2:78371975-78371994 Msa0094960:CDS 20.0%
!! CACATAAATTGAAAAACATA+AGG + chr1_2:78372040-78372059 None:intergenic 20.0%
!!! TTGATCATATATTTTGTGTT+TGG - chr1_2:78372068-78372087 Msa0094960:CDS 20.0%
!! AAAAGAAAAAGTTATTGCAT+TGG + chr1_2:78372177-78372196 None:intergenic 20.0%
!! AATCAATACTGTAGTTAATA+AGG - chr1_2:78372255-78372274 Msa0094960:CDS 20.0%
!! TGTAGTTAATAAGGATAATT+TGG - chr1_2:78372264-78372283 Msa0094960:CDS 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr1_2:78372293-78372312 None:intergenic 20.0%
!! TGTATATTGCATAAATAAAC+AGG + chr1_2:78372750-78372769 None:intergenic 20.0%
!! GAAATGGAATATATTGTATT+GGG - chr1_2:78372936-78372955 Msa0094960:intron 20.0%
!!! GTAGTATTAATTAGAGTTTT+AGG - chr1_2:78372969-78372988 Msa0094960:intron 20.0%
!! GTAAAGTATAAAAACTGAAA+TGG + chr1_2:78373173-78373192 None:intergenic 20.0%
!!! TGGGTTTTATTAAAATAACA+AGG - chr1_2:78373471-78373490 Msa0094960:CDS 20.0%
!!! GGGTTTTATTAAAATAACAA+GGG - chr1_2:78373472-78373491 Msa0094960:CDS 20.0%
!! TAAAATAACAAGGGTAATAA+TGG - chr1_2:78373481-78373500 Msa0094960:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr1_2:78373764-78373783 Msa0094960:intron 20.0%
!!! TATATTTTCCACACAAAAAA+AGG + chr1_2:78374345-78374364 None:intergenic 20.0%
!!! TTTTTTTGTGTGGAAAATAT+AGG - chr1_2:78374344-78374363 Msa0094960:intron 20.0%
!! TAGAAAAATTTCCTATCATA+AGG - chr1_2:78374380-78374399 Msa0094960:intron 20.0%
!! CAAAAGGTGAAATTAAATAA+AGG - chr1_2:78374707-78374726 Msa0094960:intron 20.0%
!! TGTATACAAATTTAGATACA+TGG + chr1_2:78375049-78375068 None:intergenic 20.0%
!! TAGTAAAATACAATTAAGCT+AGG + chr1_2:78375095-78375114 None:intergenic 20.0%
!! ATTCTTAATTTAATGCAAAG+AGG - chr1_2:78375453-78375472 Msa0094960:intron 20.0%
!!! AACTATTGTTTTTGTTTGTT+TGG - chr1_2:78375519-78375538 Msa0094960:intron 20.0%
!!! GTTTCCATTTTTCAATAAAT+TGG + chr1_2:78375550-78375569 None:intergenic 20.0%
!!! AATTTTACATCATCAATAAC+AGG + chr1_2:78376032-78376051 None:intergenic 20.0%
!! ATTCTTGTAATAATATAGCT+AGG - chr1_2:78376162-78376181 Msa0094960:intron 20.0%
! ATTACATTGGATATAGTGTT+GGG + chr1_2:78371813-78371832 None:intergenic 25.0%
! AATTACATTGGATATAGTGT+TGG + chr1_2:78371814-78371833 None:intergenic 25.0%
! CTAATAATCACAGTACATAA+AGG + chr1_2:78371903-78371922 None:intergenic 25.0%
! CTTTATGTACTGTGATTATT+AGG - chr1_2:78371901-78371920 Msa0094960:three_prime_UTR 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr1_2:78372342-78372361 Msa0094960:CDS 25.0%
! AATGTATAAATAAGGGGAAA+TGG - chr1_2:78372920-78372939 Msa0094960:intron 25.0%
! GGAAATGGAATATATTGTAT+TGG - chr1_2:78372935-78372954 Msa0094960:intron 25.0%
!! GATAAGCTAATTAAAGTGTT+TGG - chr1_2:78373072-78373091 Msa0094960:CDS 25.0%
!! AAAGTGTTTGGTAAAAATAG+CGG - chr1_2:78373084-78373103 Msa0094960:CDS 25.0%
! TACTATATAAAGGGTAAAGT+TGG - chr1_2:78373451-78373470 Msa0094960:CDS 25.0%
! ACTATATAAAGGGTAAAGTT+GGG - chr1_2:78373452-78373471 Msa0094960:CDS 25.0%
!! TTGAAATGACTCAGTTATTT+TGG - chr1_2:78373741-78373760 Msa0094960:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG - chr1_2:78373742-78373761 Msa0094960:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr1_2:78373763-78373782 Msa0094960:intron 25.0%
! GTGTATAATAGTACTTAATC+TGG + chr1_2:78373964-78373983 None:intergenic 25.0%
! TTGATACCAAAGTAACAAAA+AGG - chr1_2:78374052-78374071 Msa0094960:intron 25.0%
!!! TATTGTCCTTTTTGTTACTT+TGG + chr1_2:78374061-78374080 None:intergenic 25.0%
!!! ATTCTAGAACAATATAGCAT+TGG - chr1_2:78374169-78374188 Msa0094960:intron 25.0%
!!! TATGTATACCTTTTTTTGTG+TGG - chr1_2:78374334-78374353 Msa0094960:intron 25.0%
! AATTGTTTGAACCTTATGAT+AGG + chr1_2:78374394-78374413 None:intergenic 25.0%
! TACGTTGAATACATAAAATC+AGG - chr1_2:78374605-78374624 Msa0094960:intron 25.0%
! ATAAAATCAGGACAAAAACA+AGG - chr1_2:78374617-78374636 Msa0094960:intron 25.0%
! TGAAGCATACATTAAACAAA+AGG - chr1_2:78374691-78374710 Msa0094960:intron 25.0%
! GCATATATTTATGATGTGTT+TGG - chr1_2:78375259-78375278 Msa0094960:intron 25.0%
! ACTCCATACATGTAATTAAA+CGG - chr1_2:78375378-78375397 Msa0094960:intron 25.0%
!! AAAAATGGAAACTTTGAAGA+AGG - chr1_2:78375558-78375577 Msa0094960:intron 25.0%
!!! TTTGATTTGCAACATTACTT+AGG + chr1_2:78376084-78376103 None:intergenic 25.0%
! AATAAAAATACTCAACGAGA+TGG + chr1_2:78376128-78376147 None:intergenic 25.0%
AGGAACTATATGCAATGTAA+TGG - chr1_2:78371844-78371863 Msa0094960:three_prime_UTR 30.0%
ATATGCAATGTAATGGTGTT+TGG - chr1_2:78371851-78371870 Msa0094960:three_prime_UTR 30.0%
TGAAGTACAACAATGAAGAA+AGG + chr1_2:78372001-78372020 None:intergenic 30.0%
! TGTTCAGAGTATTAATTGGA+GGG + chr1_2:78372207-78372226 None:intergenic 30.0%
! GTAGTGTTCAGAGTATTAAT+TGG + chr1_2:78372211-78372230 None:intergenic 30.0%
!! ATTCGATTCAGCTCATTTTT+AGG + chr1_2:78372563-78372582 None:intergenic 30.0%
GATACATTTGTAGTATCATG+GGG + chr1_2:78372812-78372831 None:intergenic 30.0%
CGATACATTTGTAGTATCAT+GGG + chr1_2:78372813-78372832 None:intergenic 30.0%
ATATGTGTGAAAAACCAAAC+TGG + chr1_2:78372893-78372912 None:intergenic 30.0%
GACGTAATATACATAAGAAC+TGG - chr1_2:78373375-78373394 Msa0094960:CDS 30.0%
AACGCAGGAAAAAAATATAG+AGG - chr1_2:78373399-78373418 Msa0094960:CDS 30.0%
TTGACAAAAAAAGCTCTGTT+TGG + chr1_2:78373629-78373648 None:intergenic 30.0%
! CTATAAGCTATAAGCTCTTT+TGG - chr1_2:78373662-78373681 Msa0094960:intron 30.0%
AAACAGACCCTTATTGTATT+GGG - chr1_2:78373695-78373714 Msa0094960:intron 30.0%
CATCATTCCCAATACAATAA+GGG + chr1_2:78373705-78373724 None:intergenic 30.0%
TCATCATTCCCAATACAATA+AGG + chr1_2:78372947-78372966 None:intergenic 30.0%
AGAAAATGGGTCAGATATTT+CGG - chr1_2:78373777-78373796 Msa0094960:intron 30.0%
CAAGTCAAACAACATAAGAA+CGG + chr1_2:78374035-78374054 None:intergenic 30.0%
AAATGTGATGTGAGAATATC+AGG - chr1_2:78374084-78374103 Msa0094960:intron 30.0%
!!! TCTTTTTCAAGAGCACTTTT+TGG + chr1_2:78374281-78374300 None:intergenic 30.0%
! TAATCTCTTTTCTCAGAAGT+TGG + chr1_2:78374806-78374825 None:intergenic 30.0%
! ACTTCTGAGAAAAGAGATTA+TGG - chr1_2:78374806-78374825 Msa0094960:intron 30.0%
ATTCCAATACAGACTATGTA+TGG - chr1_2:78374833-78374852 Msa0094960:intron 30.0%
GAAATTGTTATCCATAACTC+TGG - chr1_2:78374911-78374930 Msa0094960:intron 30.0%
TTATGATGTGTTTGGATTGA+CGG - chr1_2:78375267-78375286 Msa0094960:intron 30.0%
! GTTAATGTGATTTTCGCAAT+TGG - chr1_2:78375313-78375332 Msa0094960:intron 30.0%
GCAGCCAATTTATTGAAAAA+TGG - chr1_2:78375543-78375562 Msa0094960:intron 30.0%
! GACATAAACTTTTCCAATTG+TGG + chr1_2:78375787-78375806 None:intergenic 30.0%
TCAAGTTCCTTATCAATCTA+AGG - chr1_2:78375887-78375906 Msa0094960:intron 30.0%
CAAGTTCCTTATCAATCTAA+GGG - chr1_2:78375888-78375907 Msa0094960:intron 30.0%
TCATGGTGTAAAATGTACTT+AGG + chr1_2:78375980-78375999 None:intergenic 30.0%
ATTACTTAGGTATGCTTGTT+GGG + chr1_2:78376071-78376090 None:intergenic 30.0%
ATGTTGCAAATCAAAATGCA+TGG - chr1_2:78376089-78376108 Msa0094960:intron 30.0%
!! ATGAGAAGTATTTCAATACG+TGG - chr1_2:78376271-78376290 Msa0094960:CDS 30.0%
ATATTCCTCTCAATATGCCA+AGG - chr1_2:78371753-78371772 Msa0094960:three_prime_UTR 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr1_2:78372108-78372127 None:intergenic 35.0%
! GTGTTCAGAGTATTAATTGG+AGG + chr1_2:78372208-78372227 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+TGG - chr1_2:78372346-78372365 Msa0094960:CDS 35.0%
GCGATACATTTGTAGTATCA+TGG + chr1_2:78372814-78372833 None:intergenic 35.0%
!!! TTAGAGTTTTAGGCTCTGTT+TGG - chr1_2:78372979-78372998 Msa0094960:intron 35.0%
GCTCTGTTTGGTAAAAATAG+CGG - chr1_2:78372991-78373010 Msa0094960:intron 35.0%
! TAAGCTATAAGCTCTTTTGG+TGG - chr1_2:78373665-78373684 Msa0094960:intron 35.0%
CAATACAATAAGGGTCTGTT+TGG + chr1_2:78373696-78373715 None:intergenic 35.0%
CAAACAGACCCTTATTGTAT+TGG - chr1_2:78373694-78373713 Msa0094960:intron 35.0%
GAAAATGGGTCAGATATTTC+GGG - chr1_2:78373778-78373797 Msa0094960:intron 35.0%
!! GTTCTAGAATCTAGATCTCT+AGG + chr1_2:78374159-78374178 None:intergenic 35.0%
CTAACATGTTCCTTATCACA+TGG - chr1_2:78374245-78374264 Msa0094960:intron 35.0%
TGTGGAAAATATAGGTCTCA+TGG - chr1_2:78374352-78374371 Msa0094960:intron 35.0%
GTGGAAAATATAGGTCTCAT+GGG - chr1_2:78374353-78374372 Msa0094960:intron 35.0%
TGGAAAATATAGGTCTCATG+GGG - chr1_2:78374354-78374373 Msa0094960:intron 35.0%
!! CTTTCAGGTTTATTGCCAAA+TGG - chr1_2:78374494-78374513 Msa0094960:intron 35.0%
!! TCCAAAAGCATCAAACCTAA+AGG - chr1_2:78374532-78374551 Msa0094960:intron 35.0%
!! CCAAAAGCATCAAACCTAAA+GGG - chr1_2:78374533-78374552 Msa0094960:intron 35.0%
TGAAACTGTCCAATTAGGTA+TGG + chr1_2:78374582-78374601 None:intergenic 35.0%
ATACCTAATTGGACAGTTTC+AGG - chr1_2:78374581-78374600 Msa0094960:intron 35.0%
TATCCTGAAACTGTCCAATT+AGG + chr1_2:78374587-78374606 None:intergenic 35.0%
! AAAACAAGGTGACATGCTTT+TGG - chr1_2:78374631-78374650 Msa0094960:intron 35.0%
CTACCATACATAGTCTGTAT+TGG + chr1_2:78374839-78374858 None:intergenic 35.0%
TATGTATGGTAGCAATGGTT+GGG - chr1_2:78374847-78374866 Msa0094960:intron 35.0%
! TTTAGAGCTGATTATCCAGA+AGG - chr1_2:78374887-78374906 Msa0094960:intron 35.0%
TTAGAGCTGATTATCCAGAA+GGG - chr1_2:78374888-78374907 Msa0094960:intron 35.0%
AGGCAACAGAATCAATAAGT+GGG + chr1_2:78374961-78374980 None:intergenic 35.0%
AAGGCAACAGAATCAATAAG+TGG + chr1_2:78374962-78374981 None:intergenic 35.0%
!! TATTGATTCTGTTGCCTTGA+AGG - chr1_2:78374964-78374983 Msa0094960:intron 35.0%
!! AAATTACCTCTGGTTCTTCT+AGG + chr1_2:78375001-78375020 None:intergenic 35.0%
TAGGGAACAAAAATTACCTC+TGG + chr1_2:78375011-78375030 None:intergenic 35.0%
GGACCGTTTAATTACATGTA+TGG + chr1_2:78375384-78375403 None:intergenic 35.0%
! TCAATTGCTCTTTTTCCTTC+TGG + chr1_2:78375720-78375739 None:intergenic 35.0%
GATGCTAATAATGCATGTGA+AGG - chr1_2:78375825-78375844 Msa0094960:intron 35.0%
! TAGAGGCAAACTTCGTTTTA+AGG - chr1_2:78375926-78375945 Msa0094960:intron 35.0%
ACCATGAAGAATGATAACTC+TGG - chr1_2:78375993-78376012 Msa0094960:intron 35.0%
ACCAGAGTTATCATTCTTCA+TGG + chr1_2:78375997-78376016 None:intergenic 35.0%
CATTACTTAGGTATGCTTGT+TGG + chr1_2:78376072-78376091 None:intergenic 35.0%
TTCAATACGTGGCAATACTA+TGG - chr1_2:78376282-78376301 Msa0094960:exon 35.0%
! CTGTATAAGACAAAGCACCT+TGG + chr1_2:78371773-78371792 None:intergenic 40.0%
GGTGCTTTGTCTTATACAGA+TGG - chr1_2:78371774-78371793 Msa0094960:three_prime_UTR 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr1_2:78372109-78372128 None:intergenic 40.0%
! CAAACTGGCTCAGATAAAAC+GGG + chr1_2:78372878-78372897 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG + chr1_2:78372879-78372898 None:intergenic 40.0%
TACATAAGAACTGGAAACGC+AGG - chr1_2:78373384-78373403 Msa0094960:CDS 40.0%
CTATAAGCTCAAACGCTACT+TGG - chr1_2:78373527-78373546 Msa0094960:intron 40.0%
CAATAAGGGTCTGTTTGGTA+AGG + chr1_2:78373691-78373710 None:intergenic 40.0%
ATCCCTTTCGTCAGATCTTA+AGG - chr1_2:78373879-78373898 Msa0094960:intron 40.0%
TGCCTTAAGATCTGACGAAA+GGG + chr1_2:78373884-78373903 None:intergenic 40.0%
GCATTGGAAATCTCTTCACA+TGG - chr1_2:78374185-78374204 Msa0094960:intron 40.0%
TCTCTTCACATGGCTTACAA+AGG - chr1_2:78374195-78374214 Msa0094960:intron 40.0%
AGGAACATGTTAGTAAGTGC+AGG + chr1_2:78374238-78374257 None:intergenic 40.0%
ACATGTTCCTTATCACATGG+TGG - chr1_2:78374248-78374267 Msa0094960:intron 40.0%
TCTTGTTCCACCATGTGATA+AGG + chr1_2:78374258-78374277 None:intergenic 40.0%
CCAACTTCAAAGTCACCATT+TGG + chr1_2:78374512-78374531 None:intergenic 40.0%
!! CCAAATGGTGACTTTGAAGT+TGG - chr1_2:78374509-78374528 Msa0094960:intron 40.0%
!! CCCTTTAGGTTTGATGCTTT+TGG + chr1_2:78374536-78374555 None:intergenic 40.0%
CCAATTAGGTATGGCATCAT+GGG + chr1_2:78374573-78374592 None:intergenic 40.0%
TCCAATTAGGTATGGCATCA+TGG + chr1_2:78374574-78374593 None:intergenic 40.0%
!! ATGCTTTTGGTTGTACCAGA+AGG - chr1_2:78374644-78374663 Msa0094960:intron 40.0%
AGAGAAGCTTAATGTGTCAG+TGG - chr1_2:78374778-78374797 Msa0094960:intron 40.0%
CAGACTATGTATGGTAGCAA+TGG - chr1_2:78374842-78374861 Msa0094960:intron 40.0%
CTATGTATGGTAGCAATGGT+TGG - chr1_2:78374846-78374865 Msa0094960:intron 40.0%
GTTGGGAATCATTTGCTTGT+GGG - chr1_2:78374864-78374883 Msa0094960:intron 40.0%
TAGAGCTGATTATCCAGAAG+GGG - chr1_2:78374889-78374908 Msa0094960:intron 40.0%
TGGATAACAATTTCCCCTTC+TGG + chr1_2:78374905-78374924 None:intergenic 40.0%
CATCTTCAACACCAGAGTTA+TGG + chr1_2:78374925-78374944 None:intergenic 40.0%
TGGACATGCACTTCTATGTA+GGG + chr1_2:78375029-78375048 None:intergenic 40.0%
ATGGACATGCACTTCTATGT+AGG + chr1_2:78375030-78375049 None:intergenic 40.0%
GATGCATTTGGGAACACATA+TGG + chr1_2:78375585-78375604 None:intergenic 40.0%
ATGTGTTCCCAAATGCATCA+TGG - chr1_2:78375586-78375605 Msa0094960:intron 40.0%
TGTGTTCCCAAATGCATCAT+GGG - chr1_2:78375587-78375606 Msa0094960:intron 40.0%
ATACTCCCCATGATGCATTT+GGG + chr1_2:78375596-78375615 None:intergenic 40.0%
AATACTCCCCATGATGCATT+TGG + chr1_2:78375597-78375616 None:intergenic 40.0%
TCAACTATCCATCCTGGTAA+TGG + chr1_2:78375651-78375670 None:intergenic 40.0%
AGAGATTCAACTATCCATCC+TGG + chr1_2:78375657-78375676 None:intergenic 40.0%
AGAGCAATTGAACTTGTAGC+AGG - chr1_2:78375729-78375748 Msa0094960:intron 40.0%
GAGCAATTGAACTTGTAGCA+GGG - chr1_2:78375730-78375749 Msa0094960:intron 40.0%
CAAGAAGTCTTCACCACAAT+TGG - chr1_2:78375771-78375790 Msa0094960:intron 40.0%
!! TATGTCCTCACTTTTGCAGT+TGG - chr1_2:78375801-78375820 Msa0094960:intron 40.0%
!! ATGACTGTAGAAGCATTTGC+TGG - chr1_2:78375852-78375871 Msa0094960:intron 40.0%
CCTTTGCCCTTAGATTGATA+AGG + chr1_2:78375897-78375916 None:intergenic 40.0%
CCTTATCAATCTAAGGGCAA+AGG - chr1_2:78375894-78375913 Msa0094960:intron 40.0%
TATCAATCTAAGGGCAAAGG+AGG - chr1_2:78375897-78375916 Msa0094960:intron 40.0%
ATCAATCTAAGGGCAAAGGA+GGG - chr1_2:78375898-78375917 Msa0094960:intron 40.0%
!! GATAACTCTGGTTCTCTTTG+TGG - chr1_2:78376005-78376024 Msa0094960:intron 40.0%
ATACTCAACGAGATGGATGA+TGG + chr1_2:78376121-78376140 None:intergenic 40.0%
AAGCACCTTGGCATATTGAG+AGG + chr1_2:78371761-78371780 None:intergenic 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG - chr1_2:78372876-78372895 Msa0094960:intron 45.0%
AATGGGTCAGATATTTCGGG+AGG - chr1_2:78373781-78373800 Msa0094960:intron 45.0%
ATGGGTCAGATATTTCGGGA+GGG - chr1_2:78373782-78373801 Msa0094960:intron 45.0%
ATCTGACGAAAGGGATGTTG+TGG + chr1_2:78373875-78373894 None:intergenic 45.0%
GTGCCTTAAGATCTGACGAA+AGG + chr1_2:78373885-78373904 None:intergenic 45.0%
TGTTAGTAAGTGCAGGCTGT+GGG + chr1_2:78374231-78374250 None:intergenic 45.0%
ATGTTAGTAAGTGCAGGCTG+TGG + chr1_2:78374232-78374251 None:intergenic 45.0%
TTGTCACTACTGTGCCCTTT+AGG + chr1_2:78374550-78374569 None:intergenic 45.0%
CCCATGATGCCATACCTAAT+TGG - chr1_2:78374570-78374589 Msa0094960:intron 45.0%
CTAACAGCATAAGCACCTTC+TGG + chr1_2:78374662-78374681 None:intergenic 45.0%
!! CAGAAGGTGCTTATGCTGTT+AGG - chr1_2:78374660-78374679 Msa0094960:intron 45.0%
GGTTGGGAATCATTTGCTTG+TGG - chr1_2:78374863-78374882 Msa0094960:intron 45.0%
GTTGAAGATGATCCAGCTTG+TGG - chr1_2:78374935-78374954 Msa0094960:intron 45.0%
! AGGTGGGTTCAAAACCTTCA+AGG + chr1_2:78374981-78375000 None:intergenic 45.0%
!! TACCTCTGGTTCTTCTAGGT+GGG + chr1_2:78374997-78375016 None:intergenic 45.0%
!! TTACCTCTGGTTCTTCTAGG+TGG + chr1_2:78374998-78375017 None:intergenic 45.0%
GTGTTCCCAAATGCATCATG+GGG - chr1_2:78375588-78375607 Msa0094960:intron 45.0%
ATTGATCCCACCACACATTG+AGG - chr1_2:78375614-78375633 Msa0094960:intron 45.0%
GAACACTTCACAGTACCAGA+AGG - chr1_2:78375702-78375721 Msa0094960:intron 45.0%
CATCACCAACTGCAAAAGTG+AGG + chr1_2:78375809-78375828 None:intergenic 45.0%
CGACAAGACGTACTAGGATT+AGG - chr1_2:78375952-78375971 Msa0094960:intron 45.0%
!!! ATTTTTTTTTACAAATAAAT+AGG + chr1_2:78373993-78374012 None:intergenic 5.0%
CTCAGATAAAACGGGACGGA+GGG + chr1_2:78372870-78372889 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG + chr1_2:78372874-78372893 None:intergenic 50.0%
GGTGCTTATGCTGTTAGGCT+AGG - chr1_2:78374665-78374684 Msa0094960:intron 50.0%
TCAATAAGTGGGCCACAAGC+TGG + chr1_2:78374950-78374969 None:intergenic 50.0%
AACCCACCTAGAAGAACCAG+AGG - chr1_2:78374992-78375011 Msa0094960:intron 50.0%
GAGCATCCTCAATGTGTGGT+GGG + chr1_2:78375623-78375642 None:intergenic 50.0%
TGAGCATCCTCAATGTGTGG+TGG + chr1_2:78375624-78375643 None:intergenic 50.0%
CCATGAGCATCCTCAATGTG+TGG + chr1_2:78375627-78375646 None:intergenic 50.0%
CCACACATTGAGGATGCTCA+TGG - chr1_2:78375624-78375643 Msa0094960:intron 50.0%
GATGCTCATGGTCCATTACC+AGG - chr1_2:78375636-78375655 Msa0094960:intron 50.0%
CTCATGGTCCATTACCAGGA+TGG - chr1_2:78375640-78375659 Msa0094960:intron 50.0%
!! GGCAAAGGAGGGTTTGTTAG+AGG - chr1_2:78375909-78375928 Msa0094960:intron 50.0%
AGGCTACGACAAGACGTACT+AGG - chr1_2:78375946-78375965 Msa0094960:intron 50.0%
GCTCAGATAAAACGGGACGG+AGG + chr1_2:78372871-78372890 None:intergenic 55.0%
GGTCAGATATTTCGGGAGGG+AGG - chr1_2:78373785-78373804 Msa0094960:intron 55.0%
GCGAGCTGCACTGAACGTGA+TGG + chr1_2:78374744-78374763 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78371675 78376343 78371675 ID=Msa0094960;Name=Msa0094960
chr1_2 mRNA 78371675 78376343 78371675 ID=Msa0094960-mRNA-1;Parent=Msa0094960;Name=Msa0094960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|0.5|0.66|3|258|373
chr1_2 exon 78371675 78372471 78371675 ID=Msa0094960-mRNA-1:exon:27928;Parent=Msa0094960-mRNA-1
chr1_2 exon 78373005 78373517 78373005 ID=Msa0094960-mRNA-1:exon:27927;Parent=Msa0094960-mRNA-1
chr1_2 exon 78376223 78376343 78376223 ID=Msa0094960-mRNA-1:exon:27926;Parent=Msa0094960-mRNA-1
chr1_2 five_prime_UTR 78376293 78376343 78376293 ID=Msa0094960-mRNA-1:five_prime_utr;Parent=Msa0094960-mRNA-1
chr1_2 CDS 78376223 78376292 78376223 ID=Msa0094960-mRNA-1:cds;Parent=Msa0094960-mRNA-1
chr1_2 CDS 78373005 78373517 78373005 ID=Msa0094960-mRNA-1:cds;Parent=Msa0094960-mRNA-1
chr1_2 CDS 78371933 78372471 78371933 ID=Msa0094960-mRNA-1:cds;Parent=Msa0094960-mRNA-1
chr1_2 three_prime_UTR 78371675 78371932 78371675 ID=Msa0094960-mRNA-1:three_prime_utr;Parent=Msa0094960-mRNA-1
Gene Sequence

>Msa0094960

ATGCAGAAGTTTAAAGTTCTATTAGTTATATTCCTCTCAATATGCCAAGGTGCTTTGTCTTATACAGATGGTTTATTGCCAAATGGTGACTTTGAAGTTGGTCCAAAAGCATCAAACCTAAAGGGCACAGTAGTGACAACCCATGATGCCATACCTAATTGGACAGTTTCAGGATACGTTGAATACATAAAATCAGGACAAAAACAAGGTGACATGCTTTTGGTTGTACCAGAAGGTGCTTATGCTGTTAGGCTAGGAAATGAAGCATACATTAAACAAAAGGTGAAATTAAATAAAGGGTCATCTTATTCCATCACGTTCAGTGCAGCTCGCACGTGTGCACAAGAAGAGAAGCTTAATGTGTCAGTGGTACCAACTTCTGAGAAAAGAGATTATGGTATCATTCCAATACAGACTATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGTGGGTTTAGAGCTGATTATCCAGAAGGGGAAATTGTTATCCATAACTCTGGTGTTGAAGATGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTTGAACCCACCTAGAAGAACCAGAGCCAATTTATTGAAAAATGGAAACTTTGAAGAAGGACCATATGTGTTCCCAAATGCATCATGGGGAGTATTGATCCCACCACACATTGAGGATGCTCATGGTCCATTACCAGGATGGATAGTTGAATCTCTCAAAGCAGTGAAATACATTGATTCTGAACACTTCACAGTACCAGAAGGAAAAAGAGCAATTGAACTTGTAGCAGGGAAAGAAAGTGCACTTGCACAAGAAGTCTTCACCACAATTGGAAAAGTTTATGTCCTCACTTTTGCAGTTGGTGATGCTAATAATGCATGTGAAGGTTCTATGACTGTAGAAGCATTTGCTGGTAGAGACACTGTTCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTTTGTTAGAGGCAAACTTCGTTTTAAGGCTACGACAAGACGTACTAGGATTAGGTTCCTAAGTACATTTTACACCATGAAGAATGATAACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTAAAATTGCTTAGTGTTCGTTATCCCAACAAGCATACCTAA

Protein sequence

>Msa0094960

MQKFKVLLVIFLSICQGALSYTDGLLPNGDFEVGPKASNLKGTVVTTHDAIPNWTVSGYVEYIKSGQKQGDMLLVVPEGAYAVRLGNEAYIKQKVKLNKGSSYSITFSAARTCAQEEKLNVSVVPTSEKRDYGIIPIQTMYGSNGWESFACGFRADYPEGEIVIHNSGVEDDPACGPLIDSVALKVLNPPRRTRANLLKNGNFEEGPYVFPNASWGVLIPPHIEDAHGPLPGWIVESLKAVKYIDSEHFTVPEGKRAIELVAGKESALAQEVFTTIGKVYVLTFAVGDANNACEGSMTVEAFAGRDTVQVPYQSKGKGGFVRGKLRFKATTRRTRIRFLSTFYTMKNDNSGSLCGPVIDDVKLLSVRYPNKHT*