AlfalfaGEDB | Msa0263880

M. sativa cultivar zhongmu-4 / Msa0263880

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263880	XP_013465364.1	96.573	321	4	4	1	315	1	320	0.0	628

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263880	sp\|Q9FKL2\|MYB36_ARATH	88.136	118	14	0	1	118	1	118	2.63e-75	237

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263880	A0A072VBN0	96.573	321	4	4	1	315	1	320	0.0	628

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TFs/TRs:

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Gene ID	Type	Classification
Msa0263880	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0198990	Msa0263880	0.819635	1.047280e-52	-8.615850e-47
Msa0222370	Msa0263880	0.818018	2.440016e-52	-8.615850e-47
Msa0241750	Msa0263880	0.816778	4.639665e-52	-8.615850e-47
Msa0263880	Msa0289960	0.809099	2.237410e-50	-8.615850e-47
Msa0263880	Msa0301710	0.920489	1.199793e-87	-8.615850e-47
Msa0263880	Msa0313900	0.805371	1.378605e-49	-8.615850e-47
Msa0263880	Msa0339120	0.925465	1.769090e-90	-8.615850e-47
Msa0263880	Msa0358300	0.814910	1.211188e-51	-8.615850e-47
Msa0263880	Msa0657710	0.801906	7.217387e-49	-8.615850e-47
Msa0263880	Msa0702790	0.800633	1.315382e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263880	MtrunA17_Chr2g0327351	96.573	321	4	4	1	315	1	320	0.0	628
Msa0263880	MtrunA17_Chr4g0028311	52.367	338	122	11	1	315	1	322	2.85e-95	285
Msa0263880	MtrunA17_Chr7g0264641	85.833	120	17	0	1	120	1	120	7.14e-78	238
Msa0263880	MtrunA17_Chr1g0152011	87.288	118	15	0	1	118	1	118	1.96e-76	237
Msa0263880	MtrunA17_Chr5g0400821	87.288	118	15	0	1	118	1	118	2.24e-75	233
Msa0263880	MtrunA17_Chr3g0135311	85.593	118	17	0	1	118	1	118	2.73e-74	232
Msa0263880	MtrunA17_Chr4g0054391	86.364	110	15	0	1	110	1	110	9.48e-71	221
Msa0263880	MtrunA17_Chr4g0072751	86.486	111	15	0	1	111	1	111	2.09e-69	219
Msa0263880	MtrunA17_Chr1g0151941	57.459	181	53	3	1	177	1	161	8.37e-68	212
Msa0263880	MtrunA17_Chr6g0487491	72.222	126	27	1	1	118	1	126	3.79e-62	198

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0263880	AT5G57620.1	88.136	118	14	0	1	118	1	118	2.68e-76	237
Msa0263880	AT5G65790.1	88.235	119	14	0	1	119	1	119	4.98e-76	238
Msa0263880	AT3G49690.1	86.555	119	16	0	1	119	1	119	4.51e-75	233
Msa0263880	AT5G23000.1	83.898	118	19	0	1	118	1	118	1.67e-72	227
Msa0263880	AT4G37780.1	82.203	118	21	0	1	118	1	118	2.68e-71	223
Msa0263880	AT5G56110.1	65.354	127	41	2	1	125	1	126	1.72e-56	186
Msa0263880	AT3G01140.2	52.198	182	82	3	1	178	1	181	2.91e-56	186
Msa0263880	AT5G15310.2	47.005	217	99	6	1	204	1	214	1.95e-54	180
Msa0263880	AT5G15310.4	64.567	127	42	2	1	125	1	126	2.02e-54	178
Msa0263880	AT5G15310.1	64.567	127	42	2	1	125	1	126	3.17e-54	180

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Find 50 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGTCTTGTCATGTT+TGG	0.330975	2_2:-63642277	Msa0263880:CDS
AACAAGTTCAATCTTAGTCA+TGG	0.515420	2_2:-63642169	Msa0263880:CDS
AACAGAAAATTGTTGTTCAA+GGG	0.506500	2_2:+63642420	None:intergenic
AACATGGAACTGGTGGAAAT+TGG	0.280847	2_2:-63643264	Msa0263880:CDS
AACCAAGAGTCCTTACTCAA+TGG	0.484275	2_2:-63642358	Msa0263880:CDS
AACCATTGAGTAAGGACTCT+TGG	0.431488	2_2:+63642356	None:intergenic
AAGACTGTGTTATGAGATTG+AGG	0.571621	2_2:+63642514	None:intergenic
AAGATGTGTTTGTTGGTGTT+TGG	0.363740	2_2:+63642452	None:intergenic
AATAGTGGTAGTTGTAATAA+TGG	0.383368	2_2:-63642007	Msa0263880:CDS
AATTCTCCATGCTTAATGTT+TGG	0.347724	2_2:+63643078	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCTGGTAAGAATTCT+TGG	-	chr2_2:63642079-63642098	Msa0263880:CDS	30.0%
GAAAAAGTTGTAGATTGAGA+TGG	-	chr2_2:63642191-63642210	Msa0263880:CDS	30.0%
TGAGATGGCTTAACTATTTA+AGG	-	chr2_2:63642206-63642225	Msa0263880:CDS	30.0%
AATTCTCCATGCTTAATGTT+TGG	+	chr2_2:63642232-63642251	None:intergenic	30.0%
TGCACTCTTTATGCTAATAT+TGG	-	chr2_2:63642277-63642296	Msa0263880:CDS	30.0%
TTTATGCTAATATTGGAAGC+AGG	-	chr2_2:63642284-63642303	Msa0263880:CDS	30.0%
AGATCCAGAAATATTGACAT+TGG	-	chr2_2:63642438-63642457	Msa0263880:CDS	30.0%
ATATCATTATCAGTTCTTCC+AGG	+	chr2_2:63642724-63642743	None:intergenic	30.0%
ACTCTTGGTTATGGTAAAAA+GGG	+	chr2_2:63642939-63642958	None:intergenic	30.0%
ACTACTAAAACCATTGAGTA+AGG	+	chr2_2:63642962-63642981	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	63641952	63643377	63641952	ID=Msa0263880;Name=Msa0263880
chr2_2	mRNA	63641952	63643377	63641952	ID=Msa0263880-mRNA-1;Parent=Msa0263880;Name=Msa0263880-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|315
chr2_2	exon	63643242	63643377	63643242	ID=Msa0263880-mRNA-1:exon:19787;Parent=Msa0263880-mRNA-1
chr2_2	exon	63643024	63643153	63643024	ID=Msa0263880-mRNA-1:exon:19786;Parent=Msa0263880-mRNA-1
chr2_2	exon	63641952	63642633	63641952	ID=Msa0263880-mRNA-1:exon:19785;Parent=Msa0263880-mRNA-1
chr2_2	CDS	63643242	63643377	63643242	ID=Msa0263880-mRNA-1:cds;Parent=Msa0263880-mRNA-1
chr2_2	CDS	63643024	63643153	63643024	ID=Msa0263880-mRNA-1:cds;Parent=Msa0263880-mRNA-1
chr2_2	CDS	63641952	63642633	63641952	ID=Msa0263880-mRNA-1:cds;Parent=Msa0263880-mRNA-1

Gene Sequence

>Msa0263880

ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCTCCAGAAGAAGATACAAAGCTCAAAGAGTATATAGAAAAACATGGAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATTTAAGGCCAAACATTAAGCATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACTCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAATTACCTGGAAGAACTGATAATGATATAAAAAACTACTGGAACACAAAACTAAAGAAGAAACTCATGAATCTTCTTCCTCAATCTCATAACACAGTCTTACCATATCTAACCTCTTCTCATTGCACCTCCTATTACAACCAAACACCAACAAACACATCTTTCACAACATCCCTTGAACAACAATTTTCTGTTCCTTCATCAAGTAGCTCAATCTCTCTCCCTTTTTACCATAACCAAGAGTCCTTACTCAATGGTTTTAGTAGTAATACTAATACTACTTCCATGCAATATCAACTTCAAAACCCTATGATGAAAGAAAGTCTTGTCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTCCATCTGATGGAAGTCTTGGGAAACAAGAAGAAATAATGGGGTTTCAGAATTTCATGCAAATCAACAAGTTCAATCTTAGTCATGGAAGTGATGTTGTTGATGTTAACCAATGGGAAAGAGAAAAGGTGAATTTATGCTTTAATCAAAATCATGAAAAGCAGATTACTAGTACTACACCTTTGGATTATGATCTTGAGTATATTAAGCAATTAATTACTAGTAGTAATAGTGGTAGTTGTAATAATGGTTACTTGAGTATTGATGAAAACAAGATGGAGGAGAAGACTATGTACTATTACTGA

Protein sequence

>Msa0263880

MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKHGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMNLLPQSHNTVLPYLTSSHCTSYYNQTPTNTSFTTSLEQQFSVPSSSSSISLPFYHNQESLLNGFSSNTNTTSMQYQLQNPMMKESLVMFGSEGSCCSPSDGSLGKQEEIMGFQNFMQINKFNLSHGSDVVDVNQWEREKVNLCFNQNHEKQITSTTPLDYDLEYIKQLITSSNSGSCNNGYLSIDENKMEEKTMYYY*