AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0702800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702800 MtrunA17_Chr8g0380731 94.150 359 20 1 1 358 1 359 0.0 676
Msa0702800 MtrunA17_Chr8g0380741 85.196 358 53 0 1 358 1 358 0.0 610
Msa0702800 MtrunA17_Chr8g0380751 71.667 300 85 0 29 328 1 300 2.18e-156 441
Msa0702800 MtrunA17_Chr4g0030791 42.697 356 202 2 1 356 1 354 2.38e-106 316
Msa0702800 MtrunA17_Chr4g0036721 42.416 356 203 2 1 356 1 354 2.78e-105 313
Msa0702800 MtrunA17_Chr4g0030781 42.135 356 204 2 1 356 1 354 6.93e-105 312
Msa0702800 MtrunA17_Chr4g0014171 42.416 356 203 2 1 356 1 354 1.60e-104 311
Msa0702800 MtrunA17_Chr5g0405881 33.333 255 127 4 96 348 33 246 5.35e-37 134
Msa0702800 MtrunA17_Chr7g0261351 21.543 376 209 9 46 336 158 532 8.43e-13 69.3
Msa0702800 MtrunA17_Chr1g0185841 31.944 144 87 3 200 333 410 552 5.90e-12 67.0
Msa0702800 MtrunA17_Chr1g0185811 35.185 108 69 1 200 307 426 532 1.02e-11 66.2
Msa0702800 MtrunA17_Chr1g0185821 34.545 110 71 1 198 307 393 501 1.22e-11 65.9
Msa0702800 MtrunA17_Chr2g0326201 28.488 172 108 7 191 357 81 242 5.34e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702800 AT1G07750.1 41.972 355 202 3 1 355 1 351 4.90e-100 300
Msa0702800 AT2G28680.1 41.737 357 206 2 1 357 1 355 2.70e-99 298
Msa0702800 AT1G03890.1 25.616 406 225 14 17 352 53 451 2.05e-22 98.2
Msa0702800 AT5G44120.3 23.245 413 236 12 13 351 49 454 5.33e-20 91.3
Msa0702800 AT1G03880.1 22.469 405 242 10 13 351 43 441 6.54e-20 90.9
Msa0702800 AT2G28490.1 23.373 415 244 14 8 357 89 494 2.65e-16 80.5
Msa0702800 AT5G44120.1 32.484 157 105 1 195 351 112 267 5.27e-16 77.8
Msa0702800 AT5G44120.2 32.484 157 105 1 195 351 195 350 1.20e-15 77.8
Msa0702800 AT4G28520.1 31.847 157 106 1 195 351 350 505 1.60e-14 75.1
Msa0702800 AT4G28520.3 32.484 157 105 1 195 351 279 434 4.13e-14 73.6

Find 101 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTATTGTAAGCATAAT+TGG 0.126568 4_4:+74595467 None:intergenic
GATCTTAACATTATATTTCT+TGG 0.148846 4_4:-74593172 Msa0702800:CDS
TCCACTCATAAGAAATTTAT+TGG 0.149911 4_4:+74592134 None:intergenic
TTGTGACTAATCCCACATTT+TGG 0.188452 4_4:+74592888 None:intergenic
CGATAATTAAAATTTATTAA+TGG 0.209904 4_4:+74591982 None:intergenic
ACTTGAACCTAATGCTATTA+AGG 0.231472 4_4:-74592804 Msa0702800:CDS
AACCCAACATCCTTAATAAA+AGG 0.256810 4_4:+74592845 None:intergenic
ATCCAATTATGCTTACAATA+AGG 0.264684 4_4:-74595469 Msa0702800:five_prime_UTR
ACTGAATCGCAGGGGTAATT+AGG 0.266264 4_4:+74592771 None:intergenic
AAGCTCACACAAAGCCAAAA+AGG 0.266595 4_4:-74593019 Msa0702800:CDS
TGTTGGGTTAAGTGTGATTA+GGG 0.277054 4_4:-74592831 Msa0702800:CDS
ATGTTGGGTTAAGTGTGATT+AGG 0.298094 4_4:-74592832 Msa0702800:CDS
TGTATGGAATTCATGTAATA+AGG 0.302209 4_4:-74592093 Msa0702800:three_prime_UTR
AGGAAAATCTTTATCCGTTA+AGG 0.313076 4_4:+74592865 None:intergenic
AGCAACGAACTCAGCAATAT+TGG 0.322815 4_4:+74595272 None:intergenic
TATAAACAAGTCAAACTAAA+TGG 0.330642 4_4:+74592167 None:intergenic
CTAGAAGAAATCAATGGATT+TGG 0.338018 4_4:-74593911 Msa0702800:exon
GTGATAATCAAGTTAGAAAA+AGG 0.339715 4_4:-74592992 Msa0702800:CDS
TCCAATTATGCTTACAATAA+GGG 0.343288 4_4:-74595468 Msa0702800:five_prime_UTR
TACCTATTGGAGGTGTTTCA+TGG 0.356456 4_4:-74593216 Msa0702800:CDS
TTTGTGGTTGCTAAAGTTGC+TGG 0.378074 4_4:-74592638 Msa0702800:CDS
ATGGTGGTGGTTACTACATT+TGG 0.379198 4_4:-74593849 Msa0702800:CDS
ATACAACTCTACCCACCATT+TGG 0.381031 4_4:+74592025 None:intergenic
ACATTAGTCTTAGCCAAAAC+TGG 0.384648 4_4:+74593811 None:intergenic
ATAGAAATTGTGGGATTGAA+TGG 0.390973 4_4:-74592719 Msa0702800:CDS
CCACTCATAAGAAATTTATT+GGG 0.391366 4_4:+74592135 None:intergenic
GAAGGTGCCTTAATAGCATT+AGG 0.400052 4_4:+74592797 None:intergenic
CATAAACAAAGTCTTTAGTT+AGG 0.401436 4_4:+74592942 None:intergenic
ACTTCAATAGCTCATGTTCC+AGG 0.412111 4_4:-74593145 Msa0702800:CDS
ATTTACATTGCTAGAGGAAG+TGG 0.419131 4_4:-74592746 Msa0702800:CDS
ACCTATGCCTAAGCCACAAT+TGG 0.420447 4_4:-74592966 Msa0702800:CDS
AAGTTCTCAAGTTCCAGTTT+TGG 0.422771 4_4:-74593824 Msa0702800:CDS
TACAACTCTACCCACCATTT+GGG 0.435680 4_4:+74592026 None:intergenic
TAGCCGGAGAGACATCAGTA+TGG 0.435918 4_4:-74592296 Msa0702800:CDS
TGAATACTGATACGATTAGC+TGG 0.443656 4_4:+74595426 None:intergenic
ATTAATAAACCCTTCCCAAA+TGG 0.445272 4_4:-74592040 Msa0702800:three_prime_UTR
GTTAGGTCCAATTGTGGCTT+AGG 0.462868 4_4:+74592959 None:intergenic
GTCAACTTGTTCTTCAGCCA+AGG 0.466314 4_4:-74593780 Msa0702800:CDS
TGTATGTCATGATGTTATAC+AGG 0.466718 4_4:-74592007 Msa0702800:three_prime_UTR
GGGATTAGTCACAACCTTAA+CGG 0.468943 4_4:-74592879 Msa0702800:CDS
AGCAATGGTTGTGCTGTCTT+CGG 0.471177 4_4:+74593880 None:intergenic
GATGTCATACCTGTACCTAT+TGG 0.485348 4_4:-74593229 Msa0702800:CDS
GCAGGGACTGATGGTGTAGT+TGG 0.493416 4_4:-74593304 Msa0702800:intron
TGTCTTGGATGCTCAAGTTA+AGG 0.494376 4_4:-74592690 Msa0702800:CDS
GCTAAAGTTGCTGGTGAAGA+TGG 0.496979 4_4:-74592629 Msa0702800:CDS
ATGTAAATCAACTGAATCGC+AGG 0.497055 4_4:+74592761 None:intergenic
AAAGTGGGTTATGTCATAGA+AGG 0.498483 4_4:-74593724 Msa0702800:intron
GCAGGGGTAATTAGGTTTGA+AGG 0.504754 4_4:+74592779 None:intergenic
CACCATGAAACACCTCCAAT+AGG 0.508936 4_4:+74593214 None:intergenic
GAGAATAAGCCTCTCATGGT+TGG 0.513081 4_4:+74591895 None:intergenic
AGCCGGAGAGACATCAGTAT+GGG 0.531399 4_4:-74592295 Msa0702800:CDS
AATAAACCCTTCCCAAATGG+TGG 0.531487 4_4:-74592037 Msa0702800:three_prime_UTR
AACAAGTCAAACTAAATGGT+AGG 0.531603 4_4:+74592171 None:intergenic
AAAGACACTTGTTGCACAGT+AGG 0.532747 4_4:+74592261 None:intergenic
GTTTCATGGTGGTTCAATGA+TGG 0.534589 4_4:-74593202 Msa0702800:CDS
GCTAAGACTAATGTTGGTGC+TGG 0.541420 4_4:-74593802 Msa0702800:CDS
CAACCATTGCTTGAGGGAGA+TGG 0.544530 4_4:-74593868 Msa0702800:CDS
CAAAGGCTAGAAGAAATCAA+TGG 0.544738 4_4:-74593917 Msa0702800:intron
TCAACTTGTTCTTCAGCCAA+GGG 0.545644 4_4:-74593779 Msa0702800:CDS
ATTGAATGGAAAACGTGTCT+TGG 0.545710 4_4:-74592705 Msa0702800:CDS
CTCTACCCACCATTTGGGAA+GGG 0.551588 4_4:+74592031 None:intergenic
TTGTCAAACGCAGGGACTGA+TGG 0.552548 4_4:-74593313 Msa0702800:intron
TTGGATGCTCAAGTTAAGGC+TGG 0.552687 4_4:-74592686 Msa0702800:CDS
AGATATTAAGGCCCAAAATG+TGG 0.553793 4_4:-74592900 Msa0702800:CDS
TTGTTCGAATCTGCATAATG+AGG 0.553966 4_4:+74593745 None:intergenic
CCTTTGTTTGAAGAGTTAGC+CGG 0.556322 4_4:-74592312 Msa0702800:CDS
GTCATACCTGTACCTATTGG+AGG 0.560557 4_4:-74593226 Msa0702800:CDS
TCCAATTGTGGCTTAGGCAT+AGG 0.563240 4_4:+74592965 None:intergenic
TTGCTTGAGGGAGATGGTGG+TGG 0.563550 4_4:-74593862 Msa0702800:CDS
TCCCCATACTGATGTCTCTC+CGG 0.565683 4_4:+74592293 None:intergenic
GGAATGGTACTCCCCAGCAC+TGG 0.566146 4_4:-74593283 Msa0702800:CDS
ACAGCACAACCATTGCTTGA+GGG 0.569100 4_4:-74593874 Msa0702800:CDS
AAAGTCCTTGAACACCACTT+AGG 0.569759 4_4:+74593104 None:intergenic
GAAACACCTCCAATAGGTAC+AGG 0.571470 4_4:+74593220 None:intergenic
ACAAGTCAAACTAAATGGTA+GGG 0.575189 4_4:+74592172 None:intergenic
TCTTTAGTTAGGTCCAATTG+TGG 0.584862 4_4:+74592953 None:intergenic
ACTCTACCCACCATTTGGGA+AGG 0.584895 4_4:+74592030 None:intergenic
AGTTGCTGGTGAAGATGGAA+TGG 0.592132 4_4:-74592624 Msa0702800:CDS
GATATTAAGGCCCAAAATGT+GGG 0.596263 4_4:-74592899 Msa0702800:CDS
GAATACTGATACGATTAGCT+GGG 0.600142 4_4:+74595427 None:intergenic
CAGTTGATTTACATTGCTAG+AGG 0.600562 4_4:-74592752 Msa0702800:CDS
TGTAAATCAACTGAATCGCA+GGG 0.608323 4_4:+74592762 None:intergenic
CCACCATCTCCCTCAAGCAA+TGG 0.609709 4_4:+74593865 None:intergenic
TGAGGAAGAGCAAATCCCCT+TGG 0.612076 4_4:+74593763 None:intergenic
TATGCAGATTCGAACAAAGT+GGG 0.614043 4_4:-74593739 Msa0702800:CDS
GACTGATGGTGTAGTTGGAA+TGG 0.615110 4_4:-74593299 Msa0702800:CDS
TACGCATCAAGATCAATCGC+AGG 0.619713 4_4:-74595231 Msa0702800:intron
ATAAACCCTTCCCAAATGGT+GGG 0.621623 4_4:-74592036 Msa0702800:three_prime_UTR
GGTAGGGAGAATGAGACTTG+TGG 0.625569 4_4:+74592188 None:intergenic
TTATGCAGATTCGAACAAAG+TGG 0.626214 4_4:-74593740 Msa0702800:CDS
CAACTTGTTCTTCAGCCAAG+GGG 0.631432 4_4:-74593778 Msa0702800:CDS
ATGTGAATTGTGAAACGACA+TGG 0.633456 4_4:-74591922 Msa0702800:three_prime_UTR
CCGGCTAACTCTTCAAACAA+AGG 0.634501 4_4:+74592312 None:intergenic
GACAGCACAACCATTGCTTG+AGG 0.639965 4_4:-74593875 Msa0702800:CDS
CTATTGGAGGTGTTTCATGG+TGG 0.653727 4_4:-74593213 Msa0702800:CDS
CCATTGCTTGAGGGAGATGG+TGG 0.656696 4_4:-74593865 Msa0702800:CDS
CGTGAATGCGTTGAAGACTG+AGG 0.665241 4_4:+74595310 None:intergenic
TTGTTGCACAGTAGGTGACA+AGG 0.665977 4_4:+74592269 None:intergenic
GCCGGAGAGACATCAGTATG+GGG 0.687095 4_4:-74592294 Msa0702800:CDS
GTGAATGCGTTGAAGACTGA+GGG 0.696537 4_4:+74595311 None:intergenic
GTAAATCAACTGAATCGCAG+GGG 0.708656 4_4:+74592763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATAATTTTTTAATAAT+TGG + chr4_4:74593786-74593805 None:intergenic 0.0%
!!! TTTTTTTTTTGACAAAAAAT+GGG + chr4_4:74593825-74593844 None:intergenic 10.0%
!!! TTTTTTTTTTTGACAAAAAA+TGG + chr4_4:74593826-74593845 None:intergenic 10.0%
!!! AAAACAAAATTTTAACAATA+TGG + chr4_4:74593968-74593987 None:intergenic 10.0%
!!! TTTTTTTTATTGAATATGTA+TGG - chr4_4:74595271-74595290 Msa0702800:five_prime_UTR 10.0%
!! CGATAATTAAAATTTATTAA+TGG + chr4_4:74595401-74595420 None:intergenic 10.0%
!!! AATCAAAAAATTGTTTTTGA+AGG + chr4_4:74592488-74592507 None:intergenic 15.0%
!!! TTCAAAAACAATTTTTTGAT+TGG - chr4_4:74592487-74592506 Msa0702800:intron 15.0%
!! AAAATAAAATGAATCCTAAT+TGG - chr4_4:74592517-74592536 Msa0702800:intron 15.0%
!! TCAAAAAAATTAATATTGTG+AGG - chr4_4:74592844-74592863 Msa0702800:CDS 15.0%
!!! AAATAGGAGTATATATTTTA+AGG - chr4_4:74593058-74593077 Msa0702800:CDS 15.0%
!!! AATAGGAGTATATATTTTAA+GGG - chr4_4:74593059-74593078 Msa0702800:CDS 15.0%
!! TTCACGTAATAATTAAAAAA+TGG + chr4_4:74593264-74593283 None:intergenic 15.0%
!! TATTAACTTTCAAACTTATT+AGG + chr4_4:74593318-74593337 None:intergenic 15.0%
!!! ATACAATTTTAATAAAGATG+AGG - chr4_4:74594333-74594352 Msa0702800:intron 15.0%
!!! TAAAGATTTTCCTTTTATTA+AGG - chr4_4:74594525-74594544 Msa0702800:intron 15.0%
!!! ATTTGAAATTATTTTCGATT+TGG - chr4_4:74594981-74595000 Msa0702800:intron 15.0%
!!! GTAATTGAATTTGTTTTTTG+CGG + chr4_4:74591998-74592017 None:intergenic 20.0%
!!! TTTTTACATATAATTGTGTC+CGG - chr4_4:74593342-74593361 Msa0702800:intron 20.0%
!! GATCTTAACATTATATTTCT+TGG - chr4_4:74594208-74594227 Msa0702800:intron 20.0%
!! TGAATGAAAATTGAATTCTT+CGG + chr4_4:74594916-74594935 None:intergenic 20.0%
!!! TTTTGATTCACAAATCAATT+TGG - chr4_4:74594947-74594966 Msa0702800:intron 20.0%
!! TATAAACAAGTCAAACTAAA+TGG + chr4_4:74595216-74595235 None:intergenic 20.0%
! ATCCAATTATGCTTACAATA+AGG - chr4_4:74591911-74591930 Msa0702800:three_prime_UTR 25.0%
! TCCAATTATGCTTACAATAA+GGG - chr4_4:74591912-74591931 Msa0702800:three_prime_UTR 25.0%
!!! TTTCTTAGTTTGTTAAAGAC+AGG + chr4_4:74592629-74592648 None:intergenic 25.0%
! TAAGACAAAACTTCTATTTG+TGG + chr4_4:74593124-74593143 None:intergenic 25.0%
! ATGAAGTATATATTGTGTGT+TGG - chr4_4:74593365-74593384 Msa0702800:intron 25.0%
!!! ACTGCTTTTTGAACTAAAAA+TGG - chr4_4:74593403-74593422 Msa0702800:intron 25.0%
!!! AATGTTTTTTTCATGAGCAA+AGG - chr4_4:74593446-74593465 Msa0702800:intron 25.0%
! ATCTCTTAGATTTAATCTGT+TGG - chr4_4:74593713-74593732 Msa0702800:intron 25.0%
!!! CCATTTTTAGGTACTTAAAT+GGG + chr4_4:74593857-74593876 None:intergenic 25.0%
!!! TCCATTTTTAGGTACTTAAA+TGG + chr4_4:74593858-74593877 None:intergenic 25.0%
!!! CAATAGAAACATCCATTTTT+AGG + chr4_4:74593869-74593888 None:intergenic 25.0%
! TATGGAAAATCTTCATTCTA+GGG + chr4_4:74594012-74594031 None:intergenic 25.0%
! TTATGGAAAATCTTCATTCT+AGG + chr4_4:74594013-74594032 None:intergenic 25.0%
!! ATGTTGCGATACATATTTTA+TGG + chr4_4:74594030-74594049 None:intergenic 25.0%
! AAAAAATAAGTGAATTCTCC+TGG + chr4_4:74594256-74594275 None:intergenic 25.0%
!!! TTCACTTATTTTTTCCTAAG+TGG - chr4_4:74594262-74594281 Msa0702800:intron 25.0%
! GTGATAATCAAGTTAGAAAA+AGG - chr4_4:74594388-74594407 Msa0702800:intron 25.0%
! CATAAACAAAGTCTTTAGTT+AGG + chr4_4:74594441-74594460 None:intergenic 25.0%
! TGCTAAAAAACCAGATATTA+AGG - chr4_4:74594468-74594487 Msa0702800:intron 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG - chr4_4:74594532-74594551 Msa0702800:intron 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG - chr4_4:74594533-74594552 Msa0702800:intron 25.0%
! AAGTGGAAAAATAGAAATTG+TGG - chr4_4:74594651-74594670 Msa0702800:intron 25.0%
! AGTGGAAAAATAGAAATTGT+GGG - chr4_4:74594652-74594671 Msa0702800:intron 25.0%
! CCACTCATAAGAAATTTATT+GGG + chr4_4:74595248-74595267 None:intergenic 25.0%
! TCCACTCATAAGAAATTTAT+TGG + chr4_4:74595249-74595268 None:intergenic 25.0%
! TGTATGGAATTCATGTAATA+AGG - chr4_4:74595287-74595306 Msa0702800:five_prime_UTR 25.0%
TCCCTTATTGTAAGCATAAT+TGG + chr4_4:74591916-74591935 None:intergenic 30.0%
AAAATGAATCCTAATTGGCA+AGG - chr4_4:74592522-74592541 Msa0702800:intron 30.0%
TTGTTCAAATCTTCTGTTCT+TGG + chr4_4:74592690-74592709 None:intergenic 30.0%
GCAAAAATTAACTACTCGAT+TGG - chr4_4:74592821-74592840 Msa0702800:CDS 30.0%
CACACAATATATACTTCATC+CGG + chr4_4:74593364-74593383 None:intergenic 30.0%
! CTAGAAGAAATCAATGGATT+TGG - chr4_4:74593469-74593488 Msa0702800:intron 30.0%
CCCATTTAAGTACCTAAAAA+TGG - chr4_4:74593854-74593873 Msa0702800:CDS 30.0%
!!! GTTGTTTTGAAGCTTAAGAA+AGG - chr4_4:74594127-74594146 Msa0702800:intron 30.0%
AGGAAAATCTTTATCCGTTA+AGG + chr4_4:74594518-74594537 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG + chr4_4:74594538-74594557 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG - chr4_4:74594576-74594595 Msa0702800:intron 30.0%
ATAGAAATTGTGGGATTGAA+TGG - chr4_4:74594661-74594680 Msa0702800:intron 30.0%
TTAGCAACCACAAAAAATTG+TGG + chr4_4:74594736-74594755 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG + chr4_4:74594806-74594825 None:intergenic 30.0%
ACAAGTCAAACTAAATGGTA+GGG + chr4_4:74595211-74595230 None:intergenic 30.0%
AACAAGTCAAACTAAATGGT+AGG + chr4_4:74595212-74595231 None:intergenic 30.0%
CCCAATAAATTTCTTATGAG+TGG - chr4_4:74595245-74595264 Msa0702800:five_prime_UTR 30.0%
ATTAATAAACCCTTCCCAAA+TGG - chr4_4:74595340-74595359 Msa0702800:five_prime_UTR 30.0%
TGTATGTCATGATGTTATAC+AGG - chr4_4:74595373-74595392 Msa0702800:five_prime_UTR 30.0%
! GAATACTGATACGATTAGCT+GGG + chr4_4:74591956-74591975 None:intergenic 35.0%
TGAATACTGATACGATTAGC+TGG + chr4_4:74591957-74591976 None:intergenic 35.0%
!! TGTTCTGCAGAAGTATCTAT+AGG - chr4_4:74592426-74592445 Msa0702800:intron 35.0%
GGAAAAGAACACAAATTACG+TGG - chr4_4:74592578-74592597 Msa0702800:intron 35.0%
! TTAGTGGAGTGTCTATAGTA+AGG + chr4_4:74592926-74592945 None:intergenic 35.0%
! ATAGACACTCCACTAACTTT+TGG - chr4_4:74592930-74592949 Msa0702800:CDS 35.0%
TGTTTGTGTCCAAAAGTTAG+TGG + chr4_4:74592942-74592961 None:intergenic 35.0%
!! ATTAGTTCTGCAAGATTGCT+TGG + chr4_4:74593007-74593026 None:intergenic 35.0%
TCTTGTTAATCAGTGTCTCA+TGG - chr4_4:74593082-74593101 Msa0702800:CDS 35.0%
CTTGTTAATCAGTGTCTCAT+GGG - chr4_4:74593083-74593102 Msa0702800:CDS 35.0%
GTATATATTGTGTGTTGGAG+TGG - chr4_4:74593370-74593389 Msa0702800:intron 35.0%
CAAAGGCTAGAAGAAATCAA+TGG - chr4_4:74593463-74593482 Msa0702800:intron 35.0%
! AAGTTCTCAAGTTCCAGTTT+TGG - chr4_4:74593556-74593575 Msa0702800:intron 35.0%
!! ACATTAGTCTTAGCCAAAAC+TGG + chr4_4:74593572-74593591 None:intergenic 35.0%
!!! GTTTTGGCTAAGACTAATGT+TGG - chr4_4:74593572-74593591 Msa0702800:intron 35.0%
TTGTTCGAATCTGCATAATG+AGG + chr4_4:74593638-74593657 None:intergenic 35.0%
TTATGCAGATTCGAACAAAG+TGG - chr4_4:74593640-74593659 Msa0702800:intron 35.0%
TATGCAGATTCGAACAAAGT+GGG - chr4_4:74593641-74593660 Msa0702800:intron 35.0%
!! AAAGTGGGTTATGTCATAGA+AGG - chr4_4:74593656-74593675 Msa0702800:intron 35.0%
GTATCGCAACATCACTTATT+TGG - chr4_4:74594038-74594057 Msa0702800:intron 35.0%
! TTTTTCCTAAGTGGTGTTCA+AGG - chr4_4:74594271-74594290 Msa0702800:intron 35.0%
! TGATTATCACAACCCCTTTT+TGG + chr4_4:74594378-74594397 None:intergenic 35.0%
TCTTTAGTTAGGTCCAATTG+TGG + chr4_4:74594430-74594449 None:intergenic 35.0%
! ACATTTTGGGCCTTAATATC+TGG + chr4_4:74594481-74594500 None:intergenic 35.0%
AGATATTAAGGCCCAAAATG+TGG - chr4_4:74594480-74594499 Msa0702800:intron 35.0%
GATATTAAGGCCCAAAATGT+GGG - chr4_4:74594481-74594500 Msa0702800:intron 35.0%
! TGTGACTAATCCCACATTTT+GGG + chr4_4:74594494-74594513 None:intergenic 35.0%
! TTGTGACTAATCCCACATTT+TGG + chr4_4:74594495-74594514 None:intergenic 35.0%
ATGTTGGGTTAAGTGTGATT+AGG - chr4_4:74594548-74594567 Msa0702800:intron 35.0%
TGTTGGGTTAAGTGTGATTA+GGG - chr4_4:74594549-74594568 Msa0702800:intron 35.0%
TGTAAATCAACTGAATCGCA+GGG + chr4_4:74594621-74594640 None:intergenic 35.0%
ATGTAAATCAACTGAATCGC+AGG + chr4_4:74594622-74594641 None:intergenic 35.0%
! CAGTTGATTTACATTGCTAG+AGG - chr4_4:74594628-74594647 Msa0702800:intron 35.0%
ATTTACATTGCTAGAGGAAG+TGG - chr4_4:74594634-74594653 Msa0702800:intron 35.0%
ATTGAATGGAAAACGTGTCT+TGG - chr4_4:74594675-74594694 Msa0702800:intron 35.0%
!!! TGTTGTGCCACAATTTTTTG+TGG - chr4_4:74594726-74594745 Msa0702800:intron 35.0%
! CGATTTGGAGTACGTTATTA+AGG - chr4_4:74594996-74595015 Msa0702800:intron 35.0%
ATGTGAATTGTGAAACGACA+TGG - chr4_4:74595458-74595477 Msa0702800:five_prime_UTR 35.0%
AGCAACGAACTCAGCAATAT+TGG + chr4_4:74592111-74592130 None:intergenic 40.0%
! TCGAGCATCAGCTTAACTTT+TGG - chr4_4:74592283-74592302 Msa0702800:CDS 40.0%
! CGAGCATCAGCTTAACTTTT+GGG - chr4_4:74592284-74592303 Msa0702800:CDS 40.0%
CATCAATGTCCTTGCCAATT+AGG + chr4_4:74592534-74592553 None:intergenic 40.0%
TTGGCAAGGACATTGATGTA+CGG - chr4_4:74592536-74592555 Msa0702800:intron 40.0%
GTACGGCGGATAACTATATA+AGG - chr4_4:74592553-74592572 Msa0702800:intron 40.0%
GGCGGATAACTATATAAGGA+AGG - chr4_4:74592557-74592576 Msa0702800:intron 40.0%
AGGAAGAACAAATTCCTGGA+CGG + chr4_4:74592609-74592628 None:intergenic 40.0%
AGACAGGAAGAACAAATTCC+TGG + chr4_4:74592613-74592632 None:intergenic 40.0%
!! ATGGTGGTGGTTACTACATT+TGG - chr4_4:74593531-74593550 Msa0702800:intron 40.0%
! TCAACTTGTTCTTCAGCCAA+GGG - chr4_4:74593601-74593620 Msa0702800:intron 40.0%
TGGTCAAATTTGTCAAACGC+AGG - chr4_4:74594058-74594077 Msa0702800:intron 40.0%
GGTCAAATTTGTCAAACGCA+GGG - chr4_4:74594059-74594078 Msa0702800:intron 40.0%
! ACAACTTCTTTTCCAGTGCT+GGG + chr4_4:74594112-74594131 None:intergenic 40.0%
! AACAACTTCTTTTCCAGTGC+TGG + chr4_4:74594113-74594132 None:intergenic 40.0%
GATGTCATACCTGTACCTAT+TGG - chr4_4:74594151-74594170 Msa0702800:intron 40.0%
!! TACCTATTGGAGGTGTTTCA+TGG - chr4_4:74594164-74594183 Msa0702800:intron 40.0%
GTTTCATGGTGGTTCAATGA+TGG - chr4_4:74594178-74594197 Msa0702800:intron 40.0%
ACTTCAATAGCTCATGTTCC+AGG - chr4_4:74594235-74594254 Msa0702800:intron 40.0%
AAAGTCCTTGAACACCACTT+AGG + chr4_4:74594279-74594298 None:intergenic 40.0%
!!! TTTTTGGCTTTGTGTGAGCT+TGG + chr4_4:74594362-74594381 None:intergenic 40.0%
AAGCTCACACAAAGCCAAAA+AGG - chr4_4:74594361-74594380 Msa0702800:intron 40.0%
AGCTCACACAAAGCCAAAAA+GGG - chr4_4:74594362-74594381 Msa0702800:intron 40.0%
!! GGGATTAGTCACAACCTTAA+CGG - chr4_4:74594501-74594520 Msa0702800:intron 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG + chr4_4:74594586-74594605 None:intergenic 40.0%
GTAAATCAACTGAATCGCAG+GGG + chr4_4:74594620-74594639 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG - chr4_4:74594690-74594709 Msa0702800:intron 40.0%
TTTGTGGTTGCTAAAGTTGC+TGG - chr4_4:74594742-74594761 Msa0702800:intron 40.0%
GTGACAACTACCAAGTAAGT+TGG - chr4_4:74594793-74594812 Msa0702800:intron 40.0%
! CCTTTGTTTGAAGAGTTAGC+CGG - chr4_4:74595068-74595087 Msa0702800:intron 40.0%
! AAAGACACTTGTTGCACAGT+AGG + chr4_4:74595122-74595141 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG - chr4_4:74595127-74595146 Msa0702800:intron 40.0%
AATAAACCCTTCCCAAATGG+TGG - chr4_4:74595343-74595362 Msa0702800:five_prime_UTR 40.0%
ATAAACCCTTCCCAAATGGT+GGG - chr4_4:74595344-74595363 Msa0702800:five_prime_UTR 40.0%
TACAACTCTACCCACCATTT+GGG + chr4_4:74595357-74595376 None:intergenic 40.0%
ATACAACTCTACCCACCATT+TGG + chr4_4:74595358-74595377 None:intergenic 40.0%
GTGAATGCGTTGAAGACTGA+GGG + chr4_4:74592072-74592091 None:intergenic 45.0%
TACGCATCAAGATCAATCGC+AGG - chr4_4:74592149-74592168 Msa0702800:three_prime_UTR 45.0%
GGAAGAACAAATTCCTGGAC+GGG + chr4_4:74592608-74592627 None:intergenic 45.0%
! ATACATTCTGCTGAGTGCTG+AGG - chr4_4:74592748-74592767 Msa0702800:CDS 45.0%
CATTATCATCACGAGCAAGC+TGG - chr4_4:74593034-74593053 Msa0702800:CDS 45.0%
TCACGAGCAAGCTGGTAAAT+AGG - chr4_4:74593042-74593061 Msa0702800:CDS 45.0%
AATCAGTGTCTCATGGGCAT+TGG - chr4_4:74593089-74593108 Msa0702800:CDS 45.0%
!! TGCTTCTGAGGCATTGGTTA+AGG + chr4_4:74593221-74593240 None:intergenic 45.0%
AGCAATGGTTGTGCTGTCTT+CGG + chr4_4:74593503-74593522 None:intergenic 45.0%
ACAGCACAACCATTGCTTGA+GGG - chr4_4:74593506-74593525 Msa0702800:intron 45.0%
GCTAAGACTAATGTTGGTGC+TGG - chr4_4:74593578-74593597 Msa0702800:intron 45.0%
! GTCAACTTGTTCTTCAGCCA+AGG - chr4_4:74593600-74593619 Msa0702800:intron 45.0%
! CAACTTGTTCTTCAGCCAAG+GGG - chr4_4:74593602-74593621 Msa0702800:intron 45.0%
! GACTGATGGTGTAGTTGGAA+TGG - chr4_4:74594081-74594100 Msa0702800:intron 45.0%
! CAACTTCTTTTCCAGTGCTG+GGG + chr4_4:74594111-74594130 None:intergenic 45.0%
GTCATACCTGTACCTATTGG+AGG - chr4_4:74594154-74594173 Msa0702800:intron 45.0%
GAAACACCTCCAATAGGTAC+AGG + chr4_4:74594163-74594182 None:intergenic 45.0%
CACCATGAAACACCTCCAAT+AGG + chr4_4:74594169-74594188 None:intergenic 45.0%
!! CTATTGGAGGTGTTTCATGG+TGG - chr4_4:74594167-74594186 Msa0702800:intron 45.0%
GCTCACACAAAGCCAAAAAG+GGG - chr4_4:74594363-74594382 Msa0702800:intron 45.0%
ACCTATGCCTAAGCCACAAT+TGG - chr4_4:74594414-74594433 Msa0702800:intron 45.0%
TCCAATTGTGGCTTAGGCAT+AGG + chr4_4:74594418-74594437 None:intergenic 45.0%
GTTAGGTCCAATTGTGGCTT+AGG + chr4_4:74594424-74594443 None:intergenic 45.0%
GCAGGGGTAATTAGGTTTGA+AGG + chr4_4:74594604-74594623 None:intergenic 45.0%
ACTGAATCGCAGGGGTAATT+AGG + chr4_4:74594612-74594631 None:intergenic 45.0%
TTGGATGCTCAAGTTAAGGC+TGG - chr4_4:74594694-74594713 Msa0702800:intron 45.0%
GCTAAAGTTGCTGGTGAAGA+TGG - chr4_4:74594751-74594770 Msa0702800:intron 45.0%
AGTTGCTGGTGAAGATGGAA+TGG - chr4_4:74594756-74594775 Msa0702800:intron 45.0%
CCGGCTAACTCTTCAAACAA+AGG + chr4_4:74595071-74595090 None:intergenic 45.0%
TTGTTGCACAGTAGGTGACA+AGG + chr4_4:74595114-74595133 None:intergenic 45.0%
!!! TTATATGAATTTAATAATTT+TGG - chr4_4:74592194-74592213 Msa0702800:CDS 5.0%
CGTGAATGCGTTGAAGACTG+AGG + chr4_4:74592073-74592092 None:intergenic 50.0%
GCAAGGACATTGATGTACGG+CGG - chr4_4:74592539-74592558 Msa0702800:intron 50.0%
AGAACAAATTCCTGGACGGG+TGG + chr4_4:74592605-74592624 None:intergenic 50.0%
!! TGCATCTGCTTCTGAGGCAT+TGG + chr4_4:74593227-74593246 None:intergenic 50.0%
AACCAGTGCATCTGCTTCTG+AGG + chr4_4:74593233-74593252 None:intergenic 50.0%
GACAGCACAACCATTGCTTG+AGG - chr4_4:74593505-74593524 Msa0702800:intron 50.0%
CAACCATTGCTTGAGGGAGA+TGG - chr4_4:74593512-74593531 Msa0702800:intron 50.0%
TGAGGAAGAGCAAATCCCCT+TGG + chr4_4:74593620-74593639 None:intergenic 50.0%
TTGTCAAACGCAGGGACTGA+TGG - chr4_4:74594067-74594086 Msa0702800:intron 50.0%
TAGCCGGAGAGACATCAGTA+TGG - chr4_4:74595084-74595103 Msa0702800:intron 50.0%
AGCCGGAGAGACATCAGTAT+GGG - chr4_4:74595085-74595104 Msa0702800:intron 50.0%
TCCCCATACTGATGTCTCTC+CGG + chr4_4:74595090-74595109 None:intergenic 50.0%
GGTAGGGAGAATGAGACTTG+TGG + chr4_4:74595195-74595214 None:intergenic 50.0%
CTCTACCCACCATTTGGGAA+GGG + chr4_4:74595352-74595371 None:intergenic 50.0%
ACTCTACCCACCATTTGGGA+AGG + chr4_4:74595353-74595372 None:intergenic 50.0%
TGCCTCAGAAGCAGATGCAC+TGG - chr4_4:74593228-74593247 Msa0702800:CDS 55.0%
CCACCATCTCCCTCAAGCAA+TGG + chr4_4:74593518-74593537 None:intergenic 55.0%
CCATTGCTTGAGGGAGATGG+TGG - chr4_4:74593515-74593534 Msa0702800:intron 55.0%
! TTGCTTGAGGGAGATGGTGG+TGG - chr4_4:74593518-74593537 Msa0702800:intron 55.0%
! GCAGGGACTGATGGTGTAGT+TGG - chr4_4:74594076-74594095 Msa0702800:intron 55.0%
GCCGGAGAGACATCAGTATG+GGG - chr4_4:74595086-74595105 Msa0702800:intron 55.0%
ATTACGTGGTCCACCCGTCC+AGG - chr4_4:74592592-74592611 Msa0702800:intron 60.0%
GGAATGGTACTCCCCAGCAC+TGG - chr4_4:74594097-74594116 Msa0702800:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74591908 74595494 74591908 ID=Msa0702800;Name=Msa0702800
chr4_4 mRNA 74591908 74595494 74591908 ID=Msa0702800-mRNA-1;Parent=Msa0702800;Name=Msa0702800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=277|1|1|1|0.5|0.2|5|248|358
chr4_4 exon 74591908 74592116 74591908 ID=Msa0702800-mRNA-1:exon:23287;Parent=Msa0702800-mRNA-1
chr4_4 exon 74592143 74592335 74592143 ID=Msa0702800-mRNA-1:exon:23286;Parent=Msa0702800-mRNA-1
chr4_4 exon 74592596 74593322 74592596 ID=Msa0702800-mRNA-1:exon:23285;Parent=Msa0702800-mRNA-1
chr4_4 exon 74593725 74593934 74593725 ID=Msa0702800-mRNA-1:exon:23284;Parent=Msa0702800-mRNA-1
chr4_4 exon 74595232 74595494 74595232 ID=Msa0702800-mRNA-1:exon:23283;Parent=Msa0702800-mRNA-1
chr4_4 five_prime_UTR 74595232 74595494 74595232 ID=Msa0702800-mRNA-1:five_prime_utr;Parent=Msa0702800-mRNA-1
chr4_4 five_prime_UTR 74593921 74593934 74593921 ID=Msa0702800-mRNA-1:five_prime_utr;Parent=Msa0702800-mRNA-1
chr4_4 CDS 74593725 74593920 74593725 ID=Msa0702800-mRNA-1:cds;Parent=Msa0702800-mRNA-1
chr4_4 CDS 74592596 74593322 74592596 ID=Msa0702800-mRNA-1:cds;Parent=Msa0702800-mRNA-1
chr4_4 CDS 74592182 74592335 74592182 ID=Msa0702800-mRNA-1:cds;Parent=Msa0702800-mRNA-1
chr4_4 three_prime_UTR 74592143 74592181 74592143 ID=Msa0702800-mRNA-1:three_prime_utr;Parent=Msa0702800-mRNA-1
chr4_4 three_prime_UTR 74591908 74592116 74591908 ID=Msa0702800-mRNA-1:three_prime_utr;Parent=Msa0702800-mRNA-1
Gene Sequence

>Msa0702800

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCCAGTTTTGGCTAAGACTAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGTGTAGTTGGAATGGTACTCCCCAGCACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGTGACCAAGCTCACACAAAGCCAAAAAGGGGTTGTGATAATCAAGTTAGAAAAAGGTCAACCTATGCCTAAGCCACAATTGGACCTAACTAAAGACTTTGTTTATGACATTGATGCTAAAAAACCAGATATTAAGGCCCAAAATGTGGGATTAGTCACAACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGGGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGCGATTCAGTTGATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACAATTTTTTGTGGTTGCTAAAGTTGCTGGTGAAGATGGAATGGAGAGTTACTCTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAGAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

Protein sequence

>Msa0702800

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVPVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPSTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEVTKLTQSQKGVVIIKLEKGQPMPKPQLDLTKDFVYDIDAKKPDIKAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPAIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPQFFVVAKVAGEDGMESYSIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQELFISKTTETTSLILPTI*