Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439270 | XP_013445246.1 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.16e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439270 | sp|Q941R6|MLP31_ARATH | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 1.93e-24 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439270 | I3SJ62 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 1.03e-102 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077700 | Msa1439270 | 0.808266 | 3.369207e-50 | -8.615850e-47 |
| Msa1439250 | Msa1439270 | 0.871434 | 6.853542e-67 | -8.615850e-47 |
| Msa1439270 | Msa1461370 | 0.806857 | 6.710229e-50 | -8.615850e-47 |
| Msa0657710 | Msa1439270 | 0.837358 | 5.449004e-57 | -8.615850e-47 |
| Msa0657720 | Msa1439270 | 0.855374 | 6.584633e-62 | -8.615850e-47 |
| Msa0687580 | Msa1439270 | 0.810214 | 1.288574e-50 | -8.615850e-47 |
| Msa0693330 | Msa1439270 | 0.820119 | 8.117201e-53 | -8.615850e-47 |
| Msa0702790 | Msa1439270 | 0.856988 | 2.216259e-62 | -8.615850e-47 |
| Msa0702800 | Msa1439270 | 0.839984 | 1.142156e-57 | -8.615850e-47 |
| Msa0703950 | Msa1439270 | 0.801309 | 9.570648e-49 | -8.615850e-47 |
| Msa0723090 | Msa1439270 | 0.816439 | 5.527426e-52 | -8.615850e-47 |
| Msa0828950 | Msa1439270 | 0.851047 | 1.144278e-60 | -8.615850e-47 |
| Msa0828960 | Msa1439270 | 0.842386 | 2.669279e-58 | -8.615850e-47 |
| Msa0198990 | Msa1439270 | 0.803018 | 4.257760e-49 | -8.615850e-47 |
| Msa0209140 | Msa1439270 | 0.820602 | 6.288002e-53 | -8.615850e-47 |
| Msa0210610 | Msa1439270 | 0.807087 | 5.999140e-50 | -8.615850e-47 |
| Msa0222370 | Msa1439270 | 0.809736 | 1.632458e-50 | -8.615850e-47 |
| Msa0226310 | Msa1439270 | 0.829168 | 5.985200e-55 | -8.615850e-47 |
| Msa1238170 | Msa1439270 | 0.890398 | 1.021561e-73 | -8.615850e-47 |
| Msa1238190 | Msa1439270 | 0.800239 | 1.582137e-48 | -8.615850e-47 |
| Msa1238600 | Msa1439270 | 0.805579 | 1.246828e-49 | -8.615850e-47 |
| Msa1255210 | Msa1439270 | 0.805509 | 1.289964e-49 | -8.615850e-47 |
| Msa1283930 | Msa1439270 | 0.803905 | 2.788409e-49 | -8.615850e-47 |
| Msa1284000 | Msa1439270 | 0.945679 | 1.943433e-104 | -8.615850e-47 |
| Msa1284020 | Msa1439270 | 0.820550 | 6.466084e-53 | -8.615850e-47 |
| Msa1290900 | Msa1439270 | 0.817292 | 3.556122e-52 | -8.615850e-47 |
| Msa1295650 | Msa1439270 | 0.805067 | 1.596740e-49 | -8.615850e-47 |
| Msa1323010 | Msa1439270 | 0.803298 | 3.727144e-49 | -8.615850e-47 |
| Msa1323070 | Msa1439270 | 0.862485 | 4.902320e-64 | -8.615850e-47 |
| Msa1326710 | Msa1439270 | 0.810420 | 1.162756e-50 | -8.615850e-47 |
| Msa1341840 | Msa1439270 | 0.803880 | 2.822536e-49 | -8.615850e-47 |
| Msa0376430 | Msa1439270 | 0.804269 | 2.343069e-49 | -8.615850e-47 |
| Msa0412790 | Msa1439270 | 0.822034 | 2.938939e-53 | -8.615850e-47 |
| Msa0420610 | Msa1439270 | 0.800799 | 1.216539e-48 | -8.615850e-47 |
| Msa1012800 | Msa1439270 | 0.816026 | 6.837869e-52 | -8.615850e-47 |
| Msa1094410 | Msa1439270 | 0.807065 | 6.062953e-50 | -8.615850e-47 |
| Msa0256920 | Msa1439270 | 0.809720 | 1.646225e-50 | -8.615850e-47 |
| Msa0263880 | Msa1439270 | 0.801029 | 1.091566e-48 | -8.615850e-47 |
| Msa0288620 | Msa1439270 | 0.833706 | 4.572321e-56 | -8.615850e-47 |
| Msa0289960 | Msa1439270 | 0.833611 | 4.826941e-56 | -8.615850e-47 |
| Msa0304570 | Msa1439270 | 0.830204 | 3.350175e-55 | -8.615850e-47 |
| Msa0304680 | Msa1439270 | 0.822949 | 1.801684e-53 | -8.615850e-47 |
| Msa0313900 | Msa1439270 | 0.809203 | 2.124602e-50 | -8.615850e-47 |
| Msa0330520 | Msa1439270 | 0.807150 | 5.816867e-50 | -8.615850e-47 |
| Msa0334630 | Msa1439270 | 0.823364 | 1.441714e-53 | -8.615850e-47 |
| Msa0336110 | Msa1439270 | 0.812425 | 4.266739e-51 | -8.615850e-47 |
| Msa0343210 | Msa1439270 | 0.806278 | 8.890890e-50 | -8.615850e-47 |
| Msa0358300 | Msa1439270 | 0.841533 | 4.485086e-58 | -8.615850e-47 |
| Msa1193910 | Msa1439270 | 0.804743 | 1.866158e-49 | -8.615850e-47 |
| Msa0516250 | Msa1439270 | 0.804268 | 2.343249e-49 | -8.615850e-47 |
| Msa0567380 | Msa1439270 | 0.800635 | 1.314037e-48 | -8.615850e-47 |
| Msa0909260 | Msa1439270 | 0.801584 | 8.403146e-49 | -8.615850e-47 |
| Msa0946330 | Msa1439270 | 0.803029 | 4.236481e-49 | -8.615850e-47 |
| Msa0969380 | Msa1439270 | 0.803010 | 4.273838e-49 | -8.615850e-47 |
| Msa0969720 | Msa1439270 | 0.811310 | 7.464631e-51 | -8.615850e-47 |
| Msa0972680 | Msa1439270 | 0.823887 | 1.087048e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439270 | MtrunA17_Chr8g0355811 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 1.99e-106 | 300 |
| Msa1439270 | MtrunA17_Chr8g0355821 | 85.065 | 154 | 23 | 0 | 1 | 154 | 1 | 154 | 4.39e-98 | 279 |
| Msa1439270 | MtrunA17_Chr8g0355801 | 83.974 | 156 | 25 | 0 | 1 | 156 | 1 | 156 | 5.59e-96 | 274 |
| Msa1439270 | MtrunA17_Chr8g0355791 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 1.39e-92 | 265 |
| Msa1439270 | MtrunA17_Chr8g0355771 | 80.769 | 156 | 30 | 0 | 1 | 156 | 1 | 156 | 2.58e-91 | 262 |
| Msa1439270 | MtrunA17_Chr8g0355741 | 76.433 | 157 | 36 | 1 | 1 | 156 | 1 | 157 | 1.96e-85 | 247 |
| Msa1439270 | MtrunA17_Chr8g0355661 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 4.41e-85 | 246 |
| Msa1439270 | MtrunA17_Chr8g0355721 | 72.611 | 157 | 41 | 2 | 1 | 156 | 1 | 156 | 1.62e-81 | 237 |
| Msa1439270 | MtrunA17_Chr8g0355761 | 70.395 | 152 | 44 | 1 | 1 | 151 | 1 | 152 | 6.16e-77 | 225 |
| Msa1439270 | MtrunA17_Chr8g0355781 | 69.079 | 152 | 46 | 1 | 1 | 151 | 1 | 152 | 4.68e-76 | 223 |
| Msa1439270 | MtrunA17_Chr8g0355641 | 66.667 | 156 | 51 | 1 | 1 | 155 | 1 | 156 | 6.23e-76 | 223 |
| Msa1439270 | MtrunA17_Chr1g0160371 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 1.90e-40 | 133 |
| Msa1439270 | MtrunA17_Chr1g0160381 | 39.869 | 153 | 88 | 3 | 1 | 150 | 5 | 156 | 1.36e-37 | 126 |
| Msa1439270 | MtrunA17_Chr1g0160391 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 8.16e-31 | 108 |
| Msa1439270 | MtrunA17_Chr8g0339261 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 3.62e-25 | 94.4 |
| Msa1439270 | MtrunA17_Chr1g0160801 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 4.27e-23 | 89.0 |
| Msa1439270 | MtrunA17_Chr1g0160351 | 41.935 | 93 | 51 | 2 | 61 | 150 | 1 | 93 | 3.65e-20 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439270 | AT1G70840.1 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 1.96e-25 | 95.9 |
| Msa1439270 | AT5G28010.1 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.15e-25 | 95.5 |
| Msa1439270 | AT5G28010.2 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.15e-25 | 95.5 |
| Msa1439270 | AT1G70830.5 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 3.98e-25 | 95.1 |
| Msa1439270 | AT1G70830.3 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 6.08e-25 | 95.5 |
| Msa1439270 | AT1G70890.1 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 1.37e-24 | 93.2 |
| Msa1439270 | AT1G70830.2 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.40e-24 | 94.4 |
| Msa1439270 | AT1G70830.1 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 7.77e-24 | 95.1 |
| Msa1439270 | AT1G70830.1 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 2.50e-22 | 91.3 |
| Msa1439270 | AT1G70830.4 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 7.60e-23 | 91.7 |
| Msa1439270 | AT5G28000.1 | 32.026 | 153 | 100 | 4 | 3 | 152 | 13 | 164 | 5.97e-22 | 86.7 |
| Msa1439270 | AT4G23670.1 | 34.641 | 153 | 96 | 4 | 1 | 151 | 1 | 151 | 9.20e-22 | 85.9 |
| Msa1439270 | AT1G70850.2 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.39e-21 | 87.0 |
| Msa1439270 | AT1G14930.1 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 3.57e-21 | 84.3 |
| Msa1439270 | AT1G70850.3 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.72e-21 | 87.4 |
| Msa1439270 | AT1G70850.3 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.38e-21 | 86.7 |
| Msa1439270 | AT1G70850.1 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.72e-21 | 87.4 |
| Msa1439270 | AT1G70850.1 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.38e-21 | 86.7 |
| Msa1439270 | AT2G01520.1 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 1.41e-20 | 82.8 |
| Msa1439270 | AT2G01530.1 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.40e-19 | 80.1 |
| Msa1439270 | AT1G14940.1 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 1.44e-18 | 77.8 |
| Msa1439270 | AT1G70870.1 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 2.72e-18 | 76.6 |
| Msa1439270 | AT1G14950.1 | 29.936 | 157 | 106 | 4 | 1 | 155 | 1 | 155 | 9.30e-18 | 75.5 |
| Msa1439270 | AT4G14060.1 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 1.06e-17 | 75.5 |
| Msa1439270 | AT1G23130.1 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 2.04e-17 | 74.7 |
| Msa1439270 | AT4G23680.1 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 5.26e-17 | 73.6 |
| Msa1439270 | AT1G70880.1 | 28.758 | 153 | 105 | 4 | 3 | 152 | 8 | 159 | 8.55e-17 | 73.2 |
| Msa1439270 | AT1G35260.1 | 29.861 | 144 | 96 | 4 | 9 | 149 | 8 | 149 | 1.13e-16 | 72.8 |
| Msa1439270 | AT1G30990.1 | 29.801 | 151 | 101 | 5 | 1 | 149 | 1 | 148 | 8.74e-16 | 70.5 |
| Msa1439270 | AT1G23120.1 | 27.333 | 150 | 101 | 5 | 3 | 149 | 1 | 145 | 1.56e-15 | 69.7 |
| Msa1439270 | AT1G23120.2 | 26.241 | 141 | 98 | 4 | 10 | 149 | 60 | 195 | 3.91e-15 | 69.7 |
| Msa1439270 | AT1G14960.1 | 28.387 | 155 | 107 | 4 | 1 | 153 | 1 | 153 | 7.53e-15 | 68.2 |
| Msa1439270 | AT1G24020.1 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.21e-14 | 65.9 |
| Msa1439270 | AT1G24020.2 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.21e-14 | 65.9 |
| Msa1439270 | AT3G26460.1 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 1.35e-13 | 64.7 |
| Msa1439270 | AT1G35310.1 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 2.15e-13 | 63.9 |
| Msa1439270 | AT3G26450.1 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 1.13e-11 | 59.7 |
| Msa1439270 | AT1G14940.2 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 1.42e-11 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCACATACAAGCTATT+TGG | 0.273919 | tig0028731:+19984 | Msa1439270:CDS |
| GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | tig0028731:+20029 | Msa1439270:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | tig0028731:-18451 | Msa1439270:intergenic |
| AACATTAATGAAAGAGTTCA+TGG | 0.350725 | tig0028731:+18426 | Msa1439270:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | tig0028731:+20066 | Msa1439270:CDS |
| GGTAAACTTATTACTGAACT+TGG | 0.415223 | tig0028731:+18342 | Msa1439270:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | tig0028731:+20007 | Msa1439270:CDS |
| AGGAAATCCATCCATCCATT+TGG | 0.440781 | tig0028731:-20128 | Msa1439270:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | tig0028731:+18495 | Msa1439270:CDS |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | tig0028731:+20155 | Msa1439270:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | tig0028731:+18454 | Msa1439270:CDS |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | tig0028731:+20178 | Msa1439270:CDS |
| AGATTGGCATCATACTGATT+CGG | 0.504369 | tig0028731:+18470 | Msa1439270:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | tig0028731:+20171 | Msa1439270:CDS |
| GAGGATATCGATACTCCAAA+TGG | 0.515854 | tig0028731:+20113 | Msa1439270:CDS |
| ATCACATACAAGCTATTTGG+TGG | 0.530005 | tig0028731:+19987 | Msa1439270:CDS |
| CGATACTCCAAATGGATGGA+TGG | 0.534738 | tig0028731:+20121 | Msa1439270:CDS |
| GTAAACTTATTACTGAACTT+GGG | 0.542207 | tig0028731:+18343 | Msa1439270:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | tig0028731:+20170 | Msa1439270:CDS |
| TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | tig0028731:+20030 | Msa1439270:CDS |
| AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | tig0028731:-18375 | Msa1439270:intergenic |
| GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | tig0028731:+20047 | Msa1439270:CDS |
| ATATCGATACTCCAAATGGA+TGG | 0.593139 | tig0028731:+20117 | Msa1439270:CDS |
| ATACTGATTCGGTTAAACAC+TGG | 0.606046 | tig0028731:+18481 | Msa1439270:CDS |
| CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | tig0028731:+20040 | Msa1439270:CDS |
| CATGGTGCCAAACTTCATGA+AGG | 0.632424 | tig0028731:+18444 | Msa1439270:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | tig0028731:+20172 | Msa1439270:CDS |
| TGACGTAATAACAGATGGCG+AGG | 0.668621 | tig0028731:+19914 | Msa1439270:intron |
| TGATTATGAGAAGAACAATG+AGG | 0.681814 | tig0028731:+20094 | Msa1439270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATTATCAAAAAAATAA+TGG | - | tig0028731:18891-18910 | Msa1439270:intergenic | 10.0% |
| !! | ATATATATTATTCGAAAAAA+AGG | + | tig0028731:18935-18954 | Msa1439270:intron | 10.0% |
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | + | tig0028731:19541-19560 | Msa1439270:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | + | tig0028731:19822-19841 | Msa1439270:intron | 10.0% |
| !! | CTTAATTATCAAAAAAATAA+TGG | - | tig0028731:18891-18910 | Msa1439270:intergenic | 10.0% |
| !! | ATATATATTATTCGAAAAAA+AGG | + | tig0028731:18935-18954 | Msa1439270:intron | 10.0% |
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | + | tig0028731:19541-19560 | Msa1439270:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | + | tig0028731:19822-19841 | Msa1439270:intron | 10.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | + | tig0028731:18578-18597 | Msa1439270:intron | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | + | tig0028731:18609-18628 | Msa1439270:intron | 15.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | - | tig0028731:18723-18742 | Msa1439270:intergenic | 15.0% |
| !! | GAATAATATATATTATGAGT+GGG | - | tig0028731:18928-18947 | Msa1439270:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATAGT+AGG | + | tig0028731:19215-19234 | Msa1439270:intron | 15.0% |
| !! | AAATTTACTATGAAATAGTA+GGG | + | tig0028731:19216-19235 | Msa1439270:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | + | tig0028731:19456-19475 | Msa1439270:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | + | tig0028731:19540-19559 | Msa1439270:intron | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | + | tig0028731:19633-19652 | Msa1439270:intron | 15.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | + | tig0028731:18578-18597 | Msa1439270:intron | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | + | tig0028731:18609-18628 | Msa1439270:intron | 15.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | - | tig0028731:18723-18742 | Msa1439270:intergenic | 15.0% |
| !! | GAATAATATATATTATGAGT+GGG | - | tig0028731:18928-18947 | Msa1439270:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATAGT+AGG | + | tig0028731:19215-19234 | Msa1439270:intron | 15.0% |
| !! | AAATTTACTATGAAATAGTA+GGG | + | tig0028731:19216-19235 | Msa1439270:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | + | tig0028731:19456-19475 | Msa1439270:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | + | tig0028731:19540-19559 | Msa1439270:intron | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | + | tig0028731:19633-19652 | Msa1439270:intron | 15.0% |
| !! | CGAATAATATATATTATGAG+TGG | - | tig0028731:18929-18948 | Msa1439270:intergenic | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | + | tig0028731:19042-19061 | Msa1439270:intron | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | tig0028731:19148-19167 | Msa1439270:intron | 20.0% |
| !!! | TATGTATTTGATTTATGCTT+AGG | + | tig0028731:19246-19265 | Msa1439270:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | + | tig0028731:19465-19484 | Msa1439270:intron | 20.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | - | tig0028731:19874-19893 | Msa1439270:intergenic | 20.0% |
| !! | CGAATAATATATATTATGAG+TGG | - | tig0028731:18929-18948 | Msa1439270:intergenic | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | + | tig0028731:19042-19061 | Msa1439270:intron | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | tig0028731:19148-19167 | Msa1439270:intron | 20.0% |
| !!! | TATGTATTTGATTTATGCTT+AGG | + | tig0028731:19246-19265 | Msa1439270:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | + | tig0028731:19465-19484 | Msa1439270:intron | 20.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | - | tig0028731:19874-19893 | Msa1439270:intergenic | 20.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | + | tig0028731:18343-18362 | Msa1439270:CDS | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | + | tig0028731:18426-18445 | Msa1439270:CDS | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | - | tig0028731:18993-19012 | Msa1439270:intergenic | 25.0% |
| ! | AAAAAATTATACTCGTACCA+AGG | - | tig0028731:19034-19053 | Msa1439270:intergenic | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | - | tig0028731:19079-19098 | Msa1439270:intergenic | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | + | tig0028731:19084-19103 | Msa1439270:intron | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | + | tig0028731:19085-19104 | Msa1439270:intron | 25.0% |
| ! | GTTTGTATAATATGATCCTT+CGG | + | tig0028731:19107-19126 | Msa1439270:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | - | tig0028731:19151-19170 | Msa1439270:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | + | tig0028731:19435-19454 | Msa1439270:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | - | tig0028731:19578-19597 | Msa1439270:intergenic | 25.0% |
| ! | AACAATGCATAATATATGCA+AGG | + | tig0028731:19697-19716 | Msa1439270:intron | 25.0% |
| ! | AAAATCACATACAAGCTATT+TGG | + | tig0028731:19984-20003 | Msa1439270:CDS | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | tig0028731:20007-20026 | Msa1439270:CDS | 25.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | + | tig0028731:18343-18362 | Msa1439270:CDS | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | + | tig0028731:18426-18445 | Msa1439270:CDS | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | - | tig0028731:18993-19012 | Msa1439270:intergenic | 25.0% |
| ! | AAAAAATTATACTCGTACCA+AGG | - | tig0028731:19034-19053 | Msa1439270:intergenic | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | - | tig0028731:19079-19098 | Msa1439270:intergenic | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | + | tig0028731:19084-19103 | Msa1439270:intron | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | + | tig0028731:19085-19104 | Msa1439270:intron | 25.0% |
| ! | GTTTGTATAATATGATCCTT+CGG | + | tig0028731:19107-19126 | Msa1439270:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | - | tig0028731:19151-19170 | Msa1439270:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | + | tig0028731:19435-19454 | Msa1439270:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | - | tig0028731:19578-19597 | Msa1439270:intergenic | 25.0% |
| ! | AACAATGCATAATATATGCA+AGG | + | tig0028731:19697-19716 | Msa1439270:intron | 25.0% |
| ! | AAAATCACATACAAGCTATT+TGG | + | tig0028731:19984-20003 | Msa1439270:CDS | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | tig0028731:20007-20026 | Msa1439270:CDS | 25.0% |
| GGTAAACTTATTACTGAACT+TGG | + | tig0028731:18342-18361 | Msa1439270:CDS | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | - | tig0028731:18649-18668 | Msa1439270:intergenic | 30.0% | |
| AAAGCAACAAATGACCTTAA+AGG | + | tig0028731:18976-18995 | Msa1439270:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | + | tig0028731:19003-19022 | Msa1439270:intron | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | + | tig0028731:19317-19336 | Msa1439270:intron | 30.0% |
| AGCCATGAAATTACAAATCA+TGG | - | tig0028731:19322-19341 | Msa1439270:intergenic | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | + | tig0028731:19329-19348 | Msa1439270:intron | 30.0% | |
| !! | GTCATTTTACAACAGTAATG+TGG | + | tig0028731:19434-19453 | Msa1439270:intron | 30.0% |
| !!! | GAATGTCTCTTTCTTTTTTG+TGG | - | tig0028731:19744-19763 | Msa1439270:intergenic | 30.0% |
| TCTTTAAGCTCATCTTAGAA+GGG | + | tig0028731:20030-20049 | Msa1439270:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | + | tig0028731:20094-20113 | Msa1439270:CDS | 30.0% | |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | tig0028731:20155-20174 | Msa1439270:CDS | 30.0% |
| GGTAAACTTATTACTGAACT+TGG | + | tig0028731:18342-18361 | Msa1439270:CDS | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | - | tig0028731:18649-18668 | Msa1439270:intergenic | 30.0% | |
| AAAGCAACAAATGACCTTAA+AGG | + | tig0028731:18976-18995 | Msa1439270:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | + | tig0028731:19003-19022 | Msa1439270:intron | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | + | tig0028731:19317-19336 | Msa1439270:intron | 30.0% |
| AGCCATGAAATTACAAATCA+TGG | - | tig0028731:19322-19341 | Msa1439270:intergenic | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | + | tig0028731:19329-19348 | Msa1439270:intron | 30.0% | |
| !! | GTCATTTTACAACAGTAATG+TGG | + | tig0028731:19434-19453 | Msa1439270:intron | 30.0% |
| !!! | GAATGTCTCTTTCTTTTTTG+TGG | - | tig0028731:19744-19763 | Msa1439270:intergenic | 30.0% |
| TCTTTAAGCTCATCTTAGAA+GGG | + | tig0028731:20030-20049 | Msa1439270:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | + | tig0028731:20094-20113 | Msa1439270:CDS | 30.0% | |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | tig0028731:20155-20174 | Msa1439270:CDS | 30.0% |
| ATCTTCACCTTCATGAAGTT+TGG | - | tig0028731:18454-18473 | Msa1439270:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | tig0028731:18454-18473 | Msa1439270:CDS | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | + | tig0028731:18470-18489 | Msa1439270:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | + | tig0028731:18481-18500 | Msa1439270:CDS | 35.0% |
| AAACACTGGACTTATGTCAT+AGG | + | tig0028731:18495-18514 | Msa1439270:CDS | 35.0% | |
| TGATTTATGCTTAGGTGTTC+AGG | + | tig0028731:19254-19273 | Msa1439270:intron | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | + | tig0028731:19328-19347 | Msa1439270:intron | 35.0% | |
| !!! | TGTCTCTTTCTTTTTTGTGG+TGG | - | tig0028731:19741-19760 | Msa1439270:intergenic | 35.0% |
| ATCACATACAAGCTATTTGG+TGG | + | tig0028731:19987-20006 | Msa1439270:CDS | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | + | tig0028731:20029-20048 | Msa1439270:CDS | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | + | tig0028731:20117-20136 | Msa1439270:CDS | 35.0% | |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | tig0028731:20151-20170 | Msa1439270:intergenic | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | + | tig0028731:20170-20189 | Msa1439270:CDS | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | + | tig0028731:20171-20190 | Msa1439270:CDS | 35.0% |
| ATCTTCACCTTCATGAAGTT+TGG | - | tig0028731:18454-18473 | Msa1439270:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | tig0028731:18454-18473 | Msa1439270:CDS | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | + | tig0028731:18470-18489 | Msa1439270:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | + | tig0028731:18481-18500 | Msa1439270:CDS | 35.0% |
| AAACACTGGACTTATGTCAT+AGG | + | tig0028731:18495-18514 | Msa1439270:CDS | 35.0% | |
| TGATTTATGCTTAGGTGTTC+AGG | + | tig0028731:19254-19273 | Msa1439270:intron | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | + | tig0028731:19328-19347 | Msa1439270:intron | 35.0% | |
| !!! | TGTCTCTTTCTTTTTTGTGG+TGG | - | tig0028731:19741-19760 | Msa1439270:intergenic | 35.0% |
| ATCACATACAAGCTATTTGG+TGG | + | tig0028731:19987-20006 | Msa1439270:CDS | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | + | tig0028731:20029-20048 | Msa1439270:CDS | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | + | tig0028731:20117-20136 | Msa1439270:CDS | 35.0% | |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | tig0028731:20151-20170 | Msa1439270:intergenic | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | + | tig0028731:20170-20189 | Msa1439270:CDS | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | + | tig0028731:20171-20190 | Msa1439270:CDS | 35.0% |
| AGTTTGTAGAACTTGTCAGC+TGG | - | tig0028731:18378-18397 | Msa1439270:intergenic | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | + | tig0028731:18686-18705 | Msa1439270:intron | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | + | tig0028731:18826-18845 | Msa1439270:intron | 40.0% | |
| AACCATCTTTGGATTCACCT+TGG | + | tig0028731:19014-19033 | Msa1439270:intron | 40.0% | |
| TACCAAGGTGAATCCAAAGA+TGG | - | tig0028731:19019-19038 | Msa1439270:intergenic | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | - | tig0028731:19126-19145 | Msa1439270:intergenic | 40.0% |
| CAAGGTTCAGATTCAAATCC+CGG | + | tig0028731:19715-19734 | Msa1439270:intron | 40.0% | |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | tig0028731:19737-19756 | Msa1439270:intergenic | 40.0% |
| CATCTTAGAAGGGCTTAACA+AGG | + | tig0028731:20040-20059 | Msa1439270:CDS | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | tig0028731:20066-20085 | Msa1439270:CDS | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | + | tig0028731:20113-20132 | Msa1439270:CDS | 40.0% | |
| AGGAAATCCATCCATCCATT+TGG | - | tig0028731:20131-20150 | Msa1439270:intergenic | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | + | tig0028731:20172-20191 | Msa1439270:CDS | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | + | tig0028731:20178-20197 | Msa1439270:CDS | 40.0% | |
| AGTTTGTAGAACTTGTCAGC+TGG | - | tig0028731:18378-18397 | Msa1439270:intergenic | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | + | tig0028731:18686-18705 | Msa1439270:intron | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | + | tig0028731:18826-18845 | Msa1439270:intron | 40.0% | |
| AACCATCTTTGGATTCACCT+TGG | + | tig0028731:19014-19033 | Msa1439270:intron | 40.0% | |
| TACCAAGGTGAATCCAAAGA+TGG | - | tig0028731:19019-19038 | Msa1439270:intergenic | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | - | tig0028731:19126-19145 | Msa1439270:intergenic | 40.0% |
| CAAGGTTCAGATTCAAATCC+CGG | + | tig0028731:19715-19734 | Msa1439270:intron | 40.0% | |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | tig0028731:19737-19756 | Msa1439270:intergenic | 40.0% |
| CATCTTAGAAGGGCTTAACA+AGG | + | tig0028731:20040-20059 | Msa1439270:CDS | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | tig0028731:20066-20085 | Msa1439270:CDS | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | + | tig0028731:20113-20132 | Msa1439270:CDS | 40.0% | |
| AGGAAATCCATCCATCCATT+TGG | - | tig0028731:20131-20150 | Msa1439270:intergenic | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | + | tig0028731:20172-20191 | Msa1439270:CDS | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | + | tig0028731:20178-20197 | Msa1439270:CDS | 40.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | + | tig0028731:18444-18463 | Msa1439270:CDS | 45.0% |
| TCTTGGGTGCAATGTATGCT+TGG | + | tig0028731:19345-19364 | Msa1439270:intron | 45.0% | |
| CTTGGGTGCAATGTATGCTT+GGG | + | tig0028731:19346-19365 | Msa1439270:intron | 45.0% | |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | tig0028731:19736-19755 | Msa1439270:intergenic | 45.0% |
| GCCTCTGACGTAATAACAGA+TGG | + | tig0028731:19909-19928 | Msa1439270:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | - | tig0028731:19913-19932 | Msa1439270:intergenic | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | + | tig0028731:19914-19933 | Msa1439270:intron | 45.0% | |
| CGATACTCCAAATGGATGGA+TGG | + | tig0028731:20121-20140 | Msa1439270:CDS | 45.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | + | tig0028731:18444-18463 | Msa1439270:CDS | 45.0% |
| TCTTGGGTGCAATGTATGCT+TGG | + | tig0028731:19345-19364 | Msa1439270:intron | 45.0% | |
| CTTGGGTGCAATGTATGCTT+GGG | + | tig0028731:19346-19365 | Msa1439270:intron | 45.0% | |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | tig0028731:19736-19755 | Msa1439270:intergenic | 45.0% |
| GCCTCTGACGTAATAACAGA+TGG | + | tig0028731:19909-19928 | Msa1439270:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | - | tig0028731:19913-19932 | Msa1439270:intergenic | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | + | tig0028731:19914-19933 | Msa1439270:intron | 45.0% | |
| CGATACTCCAAATGGATGGA+TGG | + | tig0028731:20121-20140 | Msa1439270:CDS | 45.0% | |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | + | tig0028731:18730-18749 | Msa1439270:intron | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | - | tig0028731:19403-19422 | Msa1439270:intergenic | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | + | tig0028731:19775-19794 | Msa1439270:intron | 5.0% |
| !! | TAATAAGATAATAATAATAA+AGG | - | tig0028731:19812-19831 | Msa1439270:intergenic | 5.0% |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | + | tig0028731:18730-18749 | Msa1439270:intron | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | - | tig0028731:19403-19422 | Msa1439270:intergenic | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | + | tig0028731:19775-19794 | Msa1439270:intron | 5.0% |
| !! | TAATAAGATAATAATAATAA+AGG | - | tig0028731:19812-19831 | Msa1439270:intergenic | 5.0% |
| CTTCGTGTGCTTAGCTCAGT+TGG | + | tig0028731:19670-19689 | Msa1439270:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | + | tig0028731:20047-20066 | Msa1439270:CDS | 50.0% | |
| CTTCGTGTGCTTAGCTCAGT+TGG | + | tig0028731:19670-19689 | Msa1439270:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | + | tig0028731:20047-20066 | Msa1439270:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028731 | gene | 18330 | 20211 | 18330 | ID=Msa1439270;Name=Msa1439270 |
| tig0028731 | mRNA | 18330 | 20211 | 18330 | ID=Msa1439270-mRNA-1;Parent=Msa1439270;Name=Msa1439270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|156 |
| tig0028731 | exon | 18330 | 18516 | 18330 | ID=Msa1439270-mRNA-1:exon:11676;Parent=Msa1439270-mRNA-1 |
| tig0028731 | exon | 19928 | 20211 | 19928 | ID=Msa1439270-mRNA-1:exon:11677;Parent=Msa1439270-mRNA-1 |
| tig0028731 | CDS | 18330 | 18516 | 18330 | ID=Msa1439270-mRNA-1:cds;Parent=Msa1439270-mRNA-1 |
| tig0028731 | CDS | 19928 | 20211 | 19928 | ID=Msa1439270-mRNA-1:cds;Parent=Msa1439270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
