AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657710 MtrunA17_Chr8g0380731 93.872 359 21 1 1 358 1 359 0.0 673
Msa0657710 MtrunA17_Chr8g0380741 84.916 358 54 0 1 358 1 358 0.0 607
Msa0657710 MtrunA17_Chr8g0380751 71.812 298 84 0 31 328 3 300 2.73e-155 439
Msa0657710 MtrunA17_Chr4g0030791 42.416 356 203 2 1 356 1 354 5.95e-105 312
Msa0657710 MtrunA17_Chr4g0036721 42.135 356 204 2 1 356 1 354 6.09e-104 310
Msa0657710 MtrunA17_Chr4g0030781 41.854 356 205 2 1 356 1 354 1.66e-103 308
Msa0657710 MtrunA17_Chr4g0014171 42.135 356 204 2 1 356 1 354 3.91e-103 308
Msa0657710 MtrunA17_Chr5g0405881 33.333 255 127 4 96 348 33 246 4.47e-37 134
Msa0657710 MtrunA17_Chr7g0261351 20.635 441 229 11 14 336 95 532 5.62e-13 70.1
Msa0657710 MtrunA17_Chr1g0185841 31.944 144 87 3 200 333 410 552 5.90e-12 67.0
Msa0657710 MtrunA17_Chr1g0185811 35.185 108 69 1 200 307 426 532 1.08e-11 66.2
Msa0657710 MtrunA17_Chr1g0185821 34.545 110 71 1 198 307 393 501 1.18e-11 65.9
Msa0657710 MtrunA17_Chr2g0326201 28.488 172 108 7 191 357 81 242 4.73e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657710 AT1G07750.1 41.690 355 203 3 1 355 1 351 1.09e-98 296
Msa0657710 AT2G28680.1 41.457 357 207 2 1 357 1 355 4.95e-98 295
Msa0657710 AT1G03890.1 25.831 391 214 13 32 352 67 451 1.60e-21 95.9
Msa0657710 AT1G03880.1 22.469 405 242 10 13 351 43 441 7.22e-19 87.8
Msa0657710 AT5G44120.3 23.245 413 236 12 13 351 49 454 7.37e-19 87.8
Msa0657710 AT2G28490.1 23.373 415 244 14 8 357 89 494 7.41e-17 82.0
Msa0657710 AT5G44120.1 32.484 157 105 1 195 351 112 267 5.42e-16 77.8
Msa0657710 AT5G44120.2 32.484 157 105 1 195 351 195 350 1.29e-15 77.8
Msa0657710 AT4G28520.1 31.847 157 106 1 195 351 350 505 1.57e-14 75.1
Msa0657710 AT4G28520.3 32.484 157 105 1 195 351 279 434 3.98e-14 73.6

Find 102 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTATTGTAAGCATAAT+TGG 0.126568 4_3:-67572003 None:intergenic
GATCTTAACATTATATTTCT+TGG 0.148846 4_3:+67574304 Msa0657710:CDS
TCCACTCATAAGAAATTTAT+TGG 0.149911 4_3:-67575342 None:intergenic
TTGTGACTAATCCCACATTT+TGG 0.188452 4_3:-67574588 None:intergenic
CGATAATTAAAATTTATTAA+TGG 0.209904 4_3:-67575491 None:intergenic
ACTTGAACCTAATGCTATTA+AGG 0.231472 4_3:+67574672 Msa0657710:CDS
AACCCAACATCCTTAATAAA+AGG 0.256810 4_3:-67574631 None:intergenic
ATCCAATTATGCTTACAATA+AGG 0.264684 4_3:+67572001 Msa0657710:five_prime_UTR
ACTGAATCGCAGGGGTAATT+AGG 0.266264 4_3:-67574705 None:intergenic
AAGCTCACACAAAGCCAAAA+AGG 0.266595 4_3:+67574457 Msa0657710:CDS
TGTTGGGTTAAGTGTGATTA+GGG 0.277054 4_3:+67574645 Msa0657710:CDS
ATGTTGGGTTAAGTGTGATT+AGG 0.298094 4_3:+67574644 Msa0657710:CDS
AGGAAAATCTTTATCCGTTA+AGG 0.313076 4_3:-67574611 None:intergenic
AGCAACGAACTCAGCAATAT+TGG 0.322815 4_3:-67572204 None:intergenic
TATAAACAAGTCAAACTAAA+TGG 0.330642 4_3:-67575309 None:intergenic
CTAGAAGAAATCAATGGATT+TGG 0.338018 4_3:+67573565 Msa0657710:exon
GTGATAATCAAGTTAGAAAA+AGG 0.339715 4_3:+67574484 Msa0657710:CDS
TCCAATTATGCTTACAATAA+GGG 0.343288 4_3:+67572002 Msa0657710:five_prime_UTR
TACCTATTGGAGGTGTTTCA+TGG 0.356456 4_3:+67574260 Msa0657710:CDS
TTTGTGGTTGCTAAAGTTGC+TGG 0.378074 4_3:+67574838 Msa0657710:CDS
ATGGTGGTGGTTACTACATT+TGG 0.379198 4_3:+67573627 Msa0657710:CDS
ATACAACTCTACCCACCATT+TGG 0.381031 4_3:-67575448 None:intergenic
ATAGAAATTGTGGGATTGAA+TGG 0.390973 4_3:+67574757 Msa0657710:CDS
CCACTCATAAGAAATTTATT+GGG 0.391366 4_3:-67575341 None:intergenic
GAAGGTGCCTTAATAGCATT+AGG 0.400052 4_3:-67574679 None:intergenic
CATAAACAAAGTCTTTAGTT+AGG 0.401436 4_3:-67574534 None:intergenic
AAAGTCTGATTTACAGATAT+AGG 0.402814 4_3:-67572134 None:intergenic
ACTTCAATAGCTCATGTTCC+AGG 0.412111 4_3:+67574331 Msa0657710:CDS
ATTTACATTGCTAGAGGAAG+TGG 0.419131 4_3:+67574730 Msa0657710:CDS
ACCTATGCCTAAGCCACAAT+TGG 0.420447 4_3:+67574510 Msa0657710:CDS
CCCAATAAATTTCTTATGAG+TGG 0.423152 4_3:+67575341 Msa0657710:three_prime_UTR
AAGTTCTCAAGTTCAAGTTT+TGG 0.426929 4_3:+67573652 Msa0657710:CDS
TACAACTCTACCCACCATTT+GGG 0.435680 4_3:-67575447 None:intergenic
TAGCCGGAGAGACATCAGTA+TGG 0.435918 4_3:+67575180 Msa0657710:CDS
TGAATACTGATACGATTAGC+TGG 0.443656 4_3:-67572044 None:intergenic
ATTAATAAACCCTTCCCAAA+TGG 0.445272 4_3:+67575433 Msa0657710:three_prime_UTR
GTTAGGTCCAATTGTGGCTT+AGG 0.462868 4_3:-67574517 None:intergenic
GTCAACTTGTTCTTCAGCCA+AGG 0.466314 4_3:+67573696 Msa0657710:CDS
TGTATGTCATGATGTTATAC+AGG 0.466718 4_3:+67575466 Msa0657710:three_prime_UTR
GGGATTAGTCACAACCTTAA+CGG 0.468943 4_3:+67574597 Msa0657710:CDS
AGCAATGGTTGTGCTGTCTT+CGG 0.471177 4_3:-67573596 None:intergenic
GATGTCATACCTGTACCTAT+TGG 0.485348 4_3:+67574247 Msa0657710:CDS
GCAGGGACTGATGGTGTAGT+TGG 0.493416 4_3:+67574172 Msa0657710:intron
TGTCTTGGATGCTCAAGTTA+AGG 0.494376 4_3:+67574786 Msa0657710:CDS
GCTAAAGTTGCTGGTGAAGA+TGG 0.496979 4_3:+67574847 Msa0657710:CDS
ATGTAAATCAACTGAATCGC+AGG 0.497055 4_3:-67574715 None:intergenic
AAAGTGGGTTATGTCATAGA+AGG 0.498483 4_3:+67573752 Msa0657710:CDS
GCAGGGGTAATTAGGTTTGA+AGG 0.504754 4_3:-67574697 None:intergenic
CACCATGAAACACCTCCAAT+AGG 0.508936 4_3:-67574262 None:intergenic
GAGAATAAGCCTCTCATGGT+TGG 0.528668 4_3:-67575578 None:intergenic
AGCCGGAGAGACATCAGTAT+GGG 0.531399 4_3:+67575181 Msa0657710:CDS
AATAAACCCTTCCCAAATGG+TGG 0.531487 4_3:+67575436 Msa0657710:three_prime_UTR
AACAAGTCAAACTAAATGGT+AGG 0.531603 4_3:-67575305 None:intergenic
AAAGACACTTGTTGCACAGT+AGG 0.532747 4_3:-67575215 None:intergenic
GTTTCATGGTGGTTCAATGA+TGG 0.534589 4_3:+67574274 Msa0657710:CDS
CAACCATTGCTTGAGGGAGA+TGG 0.544530 4_3:+67573608 Msa0657710:CDS
CAAAGGCTAGAAGAAATCAA+TGG 0.544738 4_3:+67573559 Msa0657710:intron
GCTAAGACCAATGTTGGTGC+TGG 0.545292 4_3:+67573674 Msa0657710:CDS
TCAACTTGTTCTTCAGCCAA+GGG 0.545644 4_3:+67573697 Msa0657710:CDS
ATTGAATGGAAAACGTGTCT+TGG 0.545710 4_3:+67574771 Msa0657710:CDS
CTCTACCCACCATTTGGGAA+GGG 0.551588 4_3:-67575442 None:intergenic
TTGTCAAACGCAGGGACTGA+TGG 0.552548 4_3:+67574163 Msa0657710:intron
TTGGATGCTCAAGTTAAGGC+TGG 0.552687 4_3:+67574790 Msa0657710:CDS
AGATATTAAGGCCCAAAATG+TGG 0.553793 4_3:+67574576 Msa0657710:CDS
TTGTTCGAATCTGCATAATG+AGG 0.553966 4_3:-67573731 None:intergenic
CCTTTGTTTGAAGAGTTAGC+CGG 0.556322 4_3:+67575164 Msa0657710:CDS
GTCATACCTGTACCTATTGG+AGG 0.560557 4_3:+67574250 Msa0657710:CDS
TCCAATTGTGGCTTAGGCAT+AGG 0.563240 4_3:-67574511 None:intergenic
TTGCTTGAGGGAGATGGTGG+TGG 0.563550 4_3:+67573614 Msa0657710:CDS
TCCCCATACTGATGTCTCTC+CGG 0.565683 4_3:-67575183 None:intergenic
GGAATGGTACTCCCCAGCAC+TGG 0.566146 4_3:+67574193 Msa0657710:CDS
ACAGCACAACCATTGCTTGA+GGG 0.569100 4_3:+67573602 Msa0657710:CDS
AAAGTCCTTGAACACCACTT+AGG 0.569759 4_3:-67574372 None:intergenic
GAAACACCTCCAATAGGTAC+AGG 0.571470 4_3:-67574256 None:intergenic
ACAAGTCAAACTAAATGGTA+GGG 0.575189 4_3:-67575304 None:intergenic
TCTTTAGTTAGGTCCAATTG+TGG 0.584862 4_3:-67574523 None:intergenic
ACTCTACCCACCATTTGGGA+AGG 0.584895 4_3:-67575443 None:intergenic
AGTTGCTGGTGAAGATGGAA+TGG 0.592132 4_3:+67574852 Msa0657710:CDS
GATATTAAGGCCCAAAATGT+GGG 0.596263 4_3:+67574577 Msa0657710:CDS
GAATACTGATACGATTAGCT+GGG 0.600142 4_3:-67572043 None:intergenic
CAGTTGATTTACATTGCTAG+AGG 0.600562 4_3:+67574724 Msa0657710:CDS
TGTAAATCAACTGAATCGCA+GGG 0.608323 4_3:-67574714 None:intergenic
CCACCATCTCCCTCAAGCAA+TGG 0.609709 4_3:-67573611 None:intergenic
TGAGGAAGAGCAAATCCCCT+TGG 0.612076 4_3:-67573713 None:intergenic
TATGCAGATTCGAACAAAGT+GGG 0.614043 4_3:+67573737 Msa0657710:CDS
GACTGATGGTGTAGTTGGAA+TGG 0.615110 4_3:+67574177 Msa0657710:CDS
TACGCATCAAGATCAATCGC+AGG 0.619713 4_3:+67572245 Msa0657710:five_prime_UTR
ATAAACCCTTCCCAAATGGT+GGG 0.621623 4_3:+67575437 Msa0657710:three_prime_UTR
GGTAGGGAGAATGAGACTTG+TGG 0.625569 4_3:-67575288 None:intergenic
TTATGCAGATTCGAACAAAG+TGG 0.626214 4_3:+67573736 Msa0657710:CDS
CAACTTGTTCTTCAGCCAAG+GGG 0.631432 4_3:+67573698 Msa0657710:CDS
ATGTGAATTGTGAAACGACA+TGG 0.633456 4_3:+67575551 Msa0657710:three_prime_UTR
AAGTTGACCAGCACCAACAT+TGG 0.633587 4_3:-67573681 None:intergenic
CCGGCTAACTCTTCAAACAA+AGG 0.634501 4_3:-67575164 None:intergenic
GACAGCACAACCATTGCTTG+AGG 0.639965 4_3:+67573601 Msa0657710:CDS
CTATTGGAGGTGTTTCATGG+TGG 0.653727 4_3:+67574263 Msa0657710:CDS
CCATTGCTTGAGGGAGATGG+TGG 0.656696 4_3:+67573611 Msa0657710:CDS
CGTGAATGCGTTGAAGACTG+AGG 0.665241 4_3:-67572166 None:intergenic
TTGTTGCACAGTAGGTGACA+AGG 0.665977 4_3:-67575207 None:intergenic
GCCGGAGAGACATCAGTATG+GGG 0.687095 4_3:+67575182 Msa0657710:CDS
GTGAATGCGTTGAAGACTGA+GGG 0.696537 4_3:-67572165 None:intergenic
GTAAATCAACTGAATCGCAG+GGG 0.708656 4_3:-67574713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATAATTTTTTAATAAT+TGG - chr4_3:67573882-67573901 None:intergenic 0.0%
!!! TTTTTTTTTTGACAAAAAAT+GGG - chr4_3:67573921-67573940 None:intergenic 10.0%
!!! TTTTTTTTTTTGACAAAAAA+TGG - chr4_3:67573922-67573941 None:intergenic 10.0%
!!! AAAACAAAATTTTAACAATA+TGG - chr4_3:67574064-67574083 None:intergenic 10.0%
!!! TTTTTTTTATTGAATATGTA+TGG + chr4_3:67575368-67575387 Msa0657710:intron 10.0%
!! CGATAATTAAAATTTATTAA+TGG - chr4_3:67575494-67575513 None:intergenic 10.0%
!!! AATCAAAAAATTGTTTTTGA+AGG - chr4_3:67572584-67572603 None:intergenic 15.0%
!!! TTCAAAAACAATTTTTTGAT+TGG + chr4_3:67572583-67572602 Msa0657710:intron 15.0%
!! AAAATAAAATGAATCCTAAT+TGG + chr4_3:67572613-67572632 Msa0657710:intron 15.0%
!! TCAAAAAAATTAATATTGTG+AGG + chr4_3:67572940-67572959 Msa0657710:intron 15.0%
!!! AAATAGGAGTATATATTTTA+AGG + chr4_3:67573154-67573173 Msa0657710:intron 15.0%
!!! AATAGGAGTATATATTTTAA+GGG + chr4_3:67573155-67573174 Msa0657710:intron 15.0%
!! TTCACGTAATAATTAAAAAA+TGG - chr4_3:67573360-67573379 None:intergenic 15.0%
!! TATTAACTTTCAAACTTATT+AGG - chr4_3:67573414-67573433 None:intergenic 15.0%
!!! ATACAATTTTAATAAAGATG+AGG + chr4_3:67574429-67574448 Msa0657710:CDS 15.0%
!!! TAAAGATTTTCCTTTTATTA+AGG + chr4_3:67574621-67574640 Msa0657710:CDS 15.0%
!!! ATTTGAAATTATTTTCGATT+TGG + chr4_3:67575077-67575096 Msa0657710:intron 15.0%
!!! GTAATTGAATTTGTTTTTTG+CGG - chr4_3:67572088-67572107 None:intergenic 20.0%
!! TAAGACAAAACTTATATTTG+TGG - chr4_3:67573220-67573239 None:intergenic 20.0%
!!! TTTTTACATATAATTGTGTC+CGG + chr4_3:67573438-67573457 Msa0657710:intron 20.0%
!! GATCTTAACATTATATTTCT+TGG + chr4_3:67574304-67574323 Msa0657710:CDS 20.0%
!! TGAATGAAAATTGAATTCTT+CGG - chr4_3:67575012-67575031 None:intergenic 20.0%
!!! TTTTGATTCACAAATCAATT+TGG + chr4_3:67575043-67575062 Msa0657710:intron 20.0%
!! TATAAACAAGTCAAACTAAA+TGG - chr4_3:67575312-67575331 None:intergenic 20.0%
! ATCCAATTATGCTTACAATA+AGG + chr4_3:67572001-67572020 Msa0657710:five_prime_UTR 25.0%
! TCCAATTATGCTTACAATAA+GGG + chr4_3:67572002-67572021 Msa0657710:five_prime_UTR 25.0%
! AAAGTCTGATTTACAGATAT+AGG - chr4_3:67572137-67572156 None:intergenic 25.0%
!!! TTTCTTAGTTTGTTAAAGAC+AGG - chr4_3:67572725-67572744 None:intergenic 25.0%
! ATGAAGTATATATTGTGTGT+TGG + chr4_3:67573461-67573480 Msa0657710:intron 25.0%
!!! ACTGCTTTTTGAACTAAAAA+TGG + chr4_3:67573499-67573518 Msa0657710:intron 25.0%
!!! AATGTTTTTTTCATGAGCAA+AGG + chr4_3:67573542-67573561 Msa0657710:intron 25.0%
! ATCTCTTAGATTTAATCTGT+TGG + chr4_3:67573809-67573828 Msa0657710:intron 25.0%
!!! CCATTTTTAGGTACTTAAAT+GGG - chr4_3:67573953-67573972 None:intergenic 25.0%
!!! TCCATTTTTAGGTACTTAAA+TGG - chr4_3:67573954-67573973 None:intergenic 25.0%
!!! CAATAGAAACATCCATTTTT+AGG - chr4_3:67573965-67573984 None:intergenic 25.0%
! TATGGAAAATCTTCATTCTA+GGG - chr4_3:67574108-67574127 None:intergenic 25.0%
! TTATGGAAAATCTTCATTCT+AGG - chr4_3:67574109-67574128 None:intergenic 25.0%
!! ATGTTGCGATACATATTTTA+TGG - chr4_3:67574126-67574145 None:intergenic 25.0%
! AAAAAATAAGTGAATTCTCC+TGG - chr4_3:67574352-67574371 None:intergenic 25.0%
!!! TTCACTTATTTTTTCCTAAG+TGG + chr4_3:67574358-67574377 Msa0657710:CDS 25.0%
! GTGATAATCAAGTTAGAAAA+AGG + chr4_3:67574484-67574503 Msa0657710:CDS 25.0%
! CATAAACAAAGTCTTTAGTT+AGG - chr4_3:67574537-67574556 None:intergenic 25.0%
! TGCTAAAAAACCAGATATTA+AGG + chr4_3:67574564-67574583 Msa0657710:CDS 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG + chr4_3:67574628-67574647 Msa0657710:CDS 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG + chr4_3:67574629-67574648 Msa0657710:CDS 25.0%
! AAGTGGAAAAATAGAAATTG+TGG + chr4_3:67574747-67574766 Msa0657710:CDS 25.0%
! AGTGGAAAAATAGAAATTGT+GGG + chr4_3:67574748-67574767 Msa0657710:CDS 25.0%
! CCACTCATAAGAAATTTATT+GGG - chr4_3:67575344-67575363 None:intergenic 25.0%
! TCCACTCATAAGAAATTTAT+TGG - chr4_3:67575345-67575364 None:intergenic 25.0%
! TGTATGGAATTCATGTAATA+AGG + chr4_3:67575384-67575403 Msa0657710:intron 25.0%
TCCCTTATTGTAAGCATAAT+TGG - chr4_3:67572006-67572025 None:intergenic 30.0%
AAAATGAATCCTAATTGGCA+AGG + chr4_3:67572618-67572637 Msa0657710:intron 30.0%
TTGTTCAAATCTTCTGTTCT+TGG - chr4_3:67572786-67572805 None:intergenic 30.0%
GCAAAAATTAACTACTCGAT+TGG + chr4_3:67572917-67572936 Msa0657710:intron 30.0%
CACACAATATATACTTCATC+CGG - chr4_3:67573460-67573479 None:intergenic 30.0%
! CTAGAAGAAATCAATGGATT+TGG + chr4_3:67573565-67573584 Msa0657710:exon 30.0%
!! AAGTTCTCAAGTTCAAGTTT+TGG + chr4_3:67573652-67573671 Msa0657710:CDS 30.0%
CCCATTTAAGTACCTAAAAA+TGG + chr4_3:67573950-67573969 Msa0657710:intron 30.0%
!!! GTTGTTTTGAAGCTTAAGAA+AGG + chr4_3:67574223-67574242 Msa0657710:CDS 30.0%
AGGAAAATCTTTATCCGTTA+AGG - chr4_3:67574614-67574633 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG - chr4_3:67574634-67574653 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG + chr4_3:67574672-67574691 Msa0657710:CDS 30.0%
ATAGAAATTGTGGGATTGAA+TGG + chr4_3:67574757-67574776 Msa0657710:CDS 30.0%
TTAGCAACCACAAAAAATTG+TGG - chr4_3:67574832-67574851 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG - chr4_3:67574902-67574921 None:intergenic 30.0%
ACAAGTCAAACTAAATGGTA+GGG - chr4_3:67575307-67575326 None:intergenic 30.0%
AACAAGTCAAACTAAATGGT+AGG - chr4_3:67575308-67575327 None:intergenic 30.0%
CCCAATAAATTTCTTATGAG+TGG + chr4_3:67575341-67575360 Msa0657710:three_prime_UTR 30.0%
ATTAATAAACCCTTCCCAAA+TGG + chr4_3:67575433-67575452 Msa0657710:three_prime_UTR 30.0%
TGTATGTCATGATGTTATAC+AGG + chr4_3:67575466-67575485 Msa0657710:three_prime_UTR 30.0%
! GAATACTGATACGATTAGCT+GGG - chr4_3:67572046-67572065 None:intergenic 35.0%
TGAATACTGATACGATTAGC+TGG - chr4_3:67572047-67572066 None:intergenic 35.0%
!! TGTTCTGCAGAAGTATCTAT+AGG + chr4_3:67572522-67572541 Msa0657710:intron 35.0%
GGAAAAGAACACAAATTACG+TGG + chr4_3:67572674-67572693 Msa0657710:intron 35.0%
! TTAGTGGAGTGTCTATAGTA+AGG - chr4_3:67573022-67573041 None:intergenic 35.0%
! ATAGACACTCCACTAACTTT+TGG + chr4_3:67573026-67573045 Msa0657710:intron 35.0%
TGTTTGTGTCCAAAAGTTAG+TGG - chr4_3:67573038-67573057 None:intergenic 35.0%
!! ATTAGTTCTGCAAGATTGCT+TGG - chr4_3:67573103-67573122 None:intergenic 35.0%
TCTTGTTAATCAGTGTCTCA+TGG + chr4_3:67573178-67573197 Msa0657710:intron 35.0%
CTTGTTAATCAGTGTCTCAT+GGG + chr4_3:67573179-67573198 Msa0657710:intron 35.0%
GTATATATTGTGTGTTGGAG+TGG + chr4_3:67573466-67573485 Msa0657710:intron 35.0%
CAAAGGCTAGAAGAAATCAA+TGG + chr4_3:67573559-67573578 Msa0657710:intron 35.0%
TTGTTCGAATCTGCATAATG+AGG - chr4_3:67573734-67573753 None:intergenic 35.0%
TTATGCAGATTCGAACAAAG+TGG + chr4_3:67573736-67573755 Msa0657710:CDS 35.0%
TATGCAGATTCGAACAAAGT+GGG + chr4_3:67573737-67573756 Msa0657710:CDS 35.0%
!! AAAGTGGGTTATGTCATAGA+AGG + chr4_3:67573752-67573771 Msa0657710:CDS 35.0%
GTATCGCAACATCACTTATT+TGG + chr4_3:67574134-67574153 Msa0657710:intron 35.0%
! TTTTTCCTAAGTGGTGTTCA+AGG + chr4_3:67574367-67574386 Msa0657710:CDS 35.0%
! TGATTATCACAACCCCTTTT+TGG - chr4_3:67574474-67574493 None:intergenic 35.0%
TCTTTAGTTAGGTCCAATTG+TGG - chr4_3:67574526-67574545 None:intergenic 35.0%
! ACATTTTGGGCCTTAATATC+TGG - chr4_3:67574577-67574596 None:intergenic 35.0%
AGATATTAAGGCCCAAAATG+TGG + chr4_3:67574576-67574595 Msa0657710:CDS 35.0%
GATATTAAGGCCCAAAATGT+GGG + chr4_3:67574577-67574596 Msa0657710:CDS 35.0%
! TGTGACTAATCCCACATTTT+GGG - chr4_3:67574590-67574609 None:intergenic 35.0%
! TTGTGACTAATCCCACATTT+TGG - chr4_3:67574591-67574610 None:intergenic 35.0%
ATGTTGGGTTAAGTGTGATT+AGG + chr4_3:67574644-67574663 Msa0657710:CDS 35.0%
TGTTGGGTTAAGTGTGATTA+GGG + chr4_3:67574645-67574664 Msa0657710:CDS 35.0%
TGTAAATCAACTGAATCGCA+GGG - chr4_3:67574717-67574736 None:intergenic 35.0%
ATGTAAATCAACTGAATCGC+AGG - chr4_3:67574718-67574737 None:intergenic 35.0%
! CAGTTGATTTACATTGCTAG+AGG + chr4_3:67574724-67574743 Msa0657710:CDS 35.0%
ATTTACATTGCTAGAGGAAG+TGG + chr4_3:67574730-67574749 Msa0657710:CDS 35.0%
ATTGAATGGAAAACGTGTCT+TGG + chr4_3:67574771-67574790 Msa0657710:CDS 35.0%
!!! TGTTGTGCCACAATTTTTTG+TGG + chr4_3:67574822-67574841 Msa0657710:CDS 35.0%
! CGATTTGGAGTACGTTATTA+AGG + chr4_3:67575092-67575111 Msa0657710:intron 35.0%
ATGTGAATTGTGAAACGACA+TGG + chr4_3:67575551-67575570 Msa0657710:three_prime_UTR 35.0%
AGCAACGAACTCAGCAATAT+TGG - chr4_3:67572207-67572226 None:intergenic 40.0%
! TCGAGCATCAGCTTAACTTT+TGG + chr4_3:67572379-67572398 Msa0657710:intron 40.0%
! CGAGCATCAGCTTAACTTTT+GGG + chr4_3:67572380-67572399 Msa0657710:intron 40.0%
CATCAATGTCCTTGCCAATT+AGG - chr4_3:67572630-67572649 None:intergenic 40.0%
TTGGCAAGGACATTGATGTA+CGG + chr4_3:67572632-67572651 Msa0657710:intron 40.0%
GTACGGCGGATAACTATATA+AGG + chr4_3:67572649-67572668 Msa0657710:intron 40.0%
GGCGGATAACTATATAAGGA+AGG + chr4_3:67572653-67572672 Msa0657710:intron 40.0%
AGGAAGAACAAATTCCTGGA+CGG - chr4_3:67572705-67572724 None:intergenic 40.0%
AGACAGGAAGAACAAATTCC+TGG - chr4_3:67572709-67572728 None:intergenic 40.0%
!! ATGGTGGTGGTTACTACATT+TGG + chr4_3:67573627-67573646 Msa0657710:CDS 40.0%
!!! GTTTTGGCTAAGACCAATGT+TGG + chr4_3:67573668-67573687 Msa0657710:CDS 40.0%
! TCAACTTGTTCTTCAGCCAA+GGG + chr4_3:67573697-67573716 Msa0657710:CDS 40.0%
TGGTCAAATTTGTCAAACGC+AGG + chr4_3:67574154-67574173 Msa0657710:intron 40.0%
GGTCAAATTTGTCAAACGCA+GGG + chr4_3:67574155-67574174 Msa0657710:intron 40.0%
! ACAACTTCTTTTCCAGTGCT+GGG - chr4_3:67574208-67574227 None:intergenic 40.0%
! AACAACTTCTTTTCCAGTGC+TGG - chr4_3:67574209-67574228 None:intergenic 40.0%
GATGTCATACCTGTACCTAT+TGG + chr4_3:67574247-67574266 Msa0657710:CDS 40.0%
!! TACCTATTGGAGGTGTTTCA+TGG + chr4_3:67574260-67574279 Msa0657710:CDS 40.0%
GTTTCATGGTGGTTCAATGA+TGG + chr4_3:67574274-67574293 Msa0657710:CDS 40.0%
ACTTCAATAGCTCATGTTCC+AGG + chr4_3:67574331-67574350 Msa0657710:CDS 40.0%
AAAGTCCTTGAACACCACTT+AGG - chr4_3:67574375-67574394 None:intergenic 40.0%
!!! TTTTTGGCTTTGTGTGAGCT+TGG - chr4_3:67574458-67574477 None:intergenic 40.0%
AAGCTCACACAAAGCCAAAA+AGG + chr4_3:67574457-67574476 Msa0657710:CDS 40.0%
AGCTCACACAAAGCCAAAAA+GGG + chr4_3:67574458-67574477 Msa0657710:CDS 40.0%
!! GGGATTAGTCACAACCTTAA+CGG + chr4_3:67574597-67574616 Msa0657710:CDS 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG - chr4_3:67574682-67574701 None:intergenic 40.0%
GTAAATCAACTGAATCGCAG+GGG - chr4_3:67574716-67574735 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG + chr4_3:67574786-67574805 Msa0657710:CDS 40.0%
TTTGTGGTTGCTAAAGTTGC+TGG + chr4_3:67574838-67574857 Msa0657710:CDS 40.0%
GTGACAACTACCAAGTAAGT+TGG + chr4_3:67574889-67574908 Msa0657710:intron 40.0%
! CCTTTGTTTGAAGAGTTAGC+CGG + chr4_3:67575164-67575183 Msa0657710:CDS 40.0%
! AAAGACACTTGTTGCACAGT+AGG - chr4_3:67575218-67575237 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG + chr4_3:67575223-67575242 Msa0657710:CDS 40.0%
AATAAACCCTTCCCAAATGG+TGG + chr4_3:67575436-67575455 Msa0657710:three_prime_UTR 40.0%
ATAAACCCTTCCCAAATGGT+GGG + chr4_3:67575437-67575456 Msa0657710:three_prime_UTR 40.0%
TACAACTCTACCCACCATTT+GGG - chr4_3:67575450-67575469 None:intergenic 40.0%
ATACAACTCTACCCACCATT+TGG - chr4_3:67575451-67575470 None:intergenic 40.0%
GTGAATGCGTTGAAGACTGA+GGG - chr4_3:67572168-67572187 None:intergenic 45.0%
TACGCATCAAGATCAATCGC+AGG + chr4_3:67572245-67572264 Msa0657710:five_prime_UTR 45.0%
GGAAGAACAAATTCCTGGAC+GGG - chr4_3:67572704-67572723 None:intergenic 45.0%
! ATACATTCTGCTGAGTGCTG+AGG + chr4_3:67572844-67572863 Msa0657710:intron 45.0%
CATTATCATCACGAGCAAGC+TGG + chr4_3:67573130-67573149 Msa0657710:intron 45.0%
TCACGAGCAAGCTGGTAAAT+AGG + chr4_3:67573138-67573157 Msa0657710:intron 45.0%
AATCAGTGTCTCATGGGCAT+TGG + chr4_3:67573185-67573204 Msa0657710:intron 45.0%
!! TGCTTCTGAGGCATTGGTTA+AGG - chr4_3:67573317-67573336 None:intergenic 45.0%
AGCAATGGTTGTGCTGTCTT+CGG - chr4_3:67573599-67573618 None:intergenic 45.0%
ACAGCACAACCATTGCTTGA+GGG + chr4_3:67573602-67573621 Msa0657710:CDS 45.0%
AAGTTGACCAGCACCAACAT+TGG - chr4_3:67573684-67573703 None:intergenic 45.0%
! GTCAACTTGTTCTTCAGCCA+AGG + chr4_3:67573696-67573715 Msa0657710:CDS 45.0%
! CAACTTGTTCTTCAGCCAAG+GGG + chr4_3:67573698-67573717 Msa0657710:CDS 45.0%
! GACTGATGGTGTAGTTGGAA+TGG + chr4_3:67574177-67574196 Msa0657710:CDS 45.0%
! CAACTTCTTTTCCAGTGCTG+GGG - chr4_3:67574207-67574226 None:intergenic 45.0%
GTCATACCTGTACCTATTGG+AGG + chr4_3:67574250-67574269 Msa0657710:CDS 45.0%
GAAACACCTCCAATAGGTAC+AGG - chr4_3:67574259-67574278 None:intergenic 45.0%
CACCATGAAACACCTCCAAT+AGG - chr4_3:67574265-67574284 None:intergenic 45.0%
!! CTATTGGAGGTGTTTCATGG+TGG + chr4_3:67574263-67574282 Msa0657710:CDS 45.0%
GCTCACACAAAGCCAAAAAG+GGG + chr4_3:67574459-67574478 Msa0657710:CDS 45.0%
ACCTATGCCTAAGCCACAAT+TGG + chr4_3:67574510-67574529 Msa0657710:CDS 45.0%
TCCAATTGTGGCTTAGGCAT+AGG - chr4_3:67574514-67574533 None:intergenic 45.0%
GTTAGGTCCAATTGTGGCTT+AGG - chr4_3:67574520-67574539 None:intergenic 45.0%
GCAGGGGTAATTAGGTTTGA+AGG - chr4_3:67574700-67574719 None:intergenic 45.0%
ACTGAATCGCAGGGGTAATT+AGG - chr4_3:67574708-67574727 None:intergenic 45.0%
TTGGATGCTCAAGTTAAGGC+TGG + chr4_3:67574790-67574809 Msa0657710:CDS 45.0%
GCTAAAGTTGCTGGTGAAGA+TGG + chr4_3:67574847-67574866 Msa0657710:CDS 45.0%
AGTTGCTGGTGAAGATGGAA+TGG + chr4_3:67574852-67574871 Msa0657710:CDS 45.0%
CCGGCTAACTCTTCAAACAA+AGG - chr4_3:67575167-67575186 None:intergenic 45.0%
TTGTTGCACAGTAGGTGACA+AGG - chr4_3:67575210-67575229 None:intergenic 45.0%
!!! TTATATGAATTTAATAATTT+TGG + chr4_3:67572290-67572309 Msa0657710:intron 5.0%
CGTGAATGCGTTGAAGACTG+AGG - chr4_3:67572169-67572188 None:intergenic 50.0%
GCAAGGACATTGATGTACGG+CGG + chr4_3:67572635-67572654 Msa0657710:intron 50.0%
AGAACAAATTCCTGGACGGG+TGG - chr4_3:67572701-67572720 None:intergenic 50.0%
!! TGCATCTGCTTCTGAGGCAT+TGG - chr4_3:67573323-67573342 None:intergenic 50.0%
AACCAGTGCATCTGCTTCTG+AGG - chr4_3:67573329-67573348 None:intergenic 50.0%
GACAGCACAACCATTGCTTG+AGG + chr4_3:67573601-67573620 Msa0657710:CDS 50.0%
CAACCATTGCTTGAGGGAGA+TGG + chr4_3:67573608-67573627 Msa0657710:CDS 50.0%
GCTAAGACCAATGTTGGTGC+TGG + chr4_3:67573674-67573693 Msa0657710:CDS 50.0%
TGAGGAAGAGCAAATCCCCT+TGG - chr4_3:67573716-67573735 None:intergenic 50.0%
TTGTCAAACGCAGGGACTGA+TGG + chr4_3:67574163-67574182 Msa0657710:intron 50.0%
TAGCCGGAGAGACATCAGTA+TGG + chr4_3:67575180-67575199 Msa0657710:CDS 50.0%
AGCCGGAGAGACATCAGTAT+GGG + chr4_3:67575181-67575200 Msa0657710:CDS 50.0%
TCCCCATACTGATGTCTCTC+CGG - chr4_3:67575186-67575205 None:intergenic 50.0%
GGTAGGGAGAATGAGACTTG+TGG - chr4_3:67575291-67575310 None:intergenic 50.0%
CTCTACCCACCATTTGGGAA+GGG - chr4_3:67575445-67575464 None:intergenic 50.0%
ACTCTACCCACCATTTGGGA+AGG - chr4_3:67575446-67575465 None:intergenic 50.0%
TGCCTCAGAAGCAGATGCAC+TGG + chr4_3:67573324-67573343 Msa0657710:intron 55.0%
CCACCATCTCCCTCAAGCAA+TGG - chr4_3:67573614-67573633 None:intergenic 55.0%
CCATTGCTTGAGGGAGATGG+TGG + chr4_3:67573611-67573630 Msa0657710:CDS 55.0%
! TTGCTTGAGGGAGATGGTGG+TGG + chr4_3:67573614-67573633 Msa0657710:CDS 55.0%
! GCAGGGACTGATGGTGTAGT+TGG + chr4_3:67574172-67574191 Msa0657710:intron 55.0%
GCCGGAGAGACATCAGTATG+GGG + chr4_3:67575182-67575201 Msa0657710:CDS 55.0%
ATTACGTGGTCCACCCGTCC+AGG + chr4_3:67572688-67572707 Msa0657710:intron 60.0%
GGAATGGTACTCCCCAGCAC+TGG + chr4_3:67574193-67574212 Msa0657710:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 67571998 67575587 67571998 ID=Msa0657710;Name=Msa0657710
chr4_3 mRNA 67571998 67575587 67571998 ID=Msa0657710-mRNA-1;Parent=Msa0657710;Name=Msa0657710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=283|1|1|1|0.5|0.2|5|251|358
chr4_3 exon 67571998 67572266 67571998 ID=Msa0657710-mRNA-1:exon:19446;Parent=Msa0657710-mRNA-1
chr4_3 exon 67573564 67573773 67573564 ID=Msa0657710-mRNA-1:exon:19447;Parent=Msa0657710-mRNA-1
chr4_3 exon 67574176 67574902 67574176 ID=Msa0657710-mRNA-1:exon:19448;Parent=Msa0657710-mRNA-1
chr4_3 exon 67575163 67575384 67575163 ID=Msa0657710-mRNA-1:exon:19449;Parent=Msa0657710-mRNA-1
chr4_3 exon 67575405 67575587 67575405 ID=Msa0657710-mRNA-1:exon:19450;Parent=Msa0657710-mRNA-1
chr4_3 five_prime_UTR 67571998 67572266 67571998 ID=Msa0657710-mRNA-1:five_prime_utr;Parent=Msa0657710-mRNA-1
chr4_3 five_prime_UTR 67573564 67573577 67573564 ID=Msa0657710-mRNA-1:five_prime_utr;Parent=Msa0657710-mRNA-1
chr4_3 CDS 67573578 67573773 67573578 ID=Msa0657710-mRNA-1:cds;Parent=Msa0657710-mRNA-1
chr4_3 CDS 67574176 67574902 67574176 ID=Msa0657710-mRNA-1:cds;Parent=Msa0657710-mRNA-1
chr4_3 CDS 67575163 67575316 67575163 ID=Msa0657710-mRNA-1:cds;Parent=Msa0657710-mRNA-1
chr4_3 three_prime_UTR 67575317 67575384 67575317 ID=Msa0657710-mRNA-1:three_prime_utr;Parent=Msa0657710-mRNA-1
chr4_3 three_prime_UTR 67575405 67575587 67575405 ID=Msa0657710-mRNA-1:three_prime_utr;Parent=Msa0657710-mRNA-1
Gene Sequence

>Msa0657710

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCAAGTTTTGGCTAAGACCAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGTGTAGTTGGAATGGTACTCCCCAGCACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGTGACCAAGCTCACACAAAGCCAAAAAGGGGTTGTGATAATCAAGTTAGAAAAAGGTCAACCTATGCCTAAGCCACAATTGGACCTAACTAAAGACTTTGTTTATGACATTGATGCTAAAAAACCAGATATTAAGGCCCAAAATGTGGGATTAGTCACAACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGGGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGCGATTCAGTTGATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACAATTTTTTGTGGTTGCTAAAGTTGCTGGTGAAGATGGAATGGAGAGTTACTCTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAGAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

Protein sequence

>Msa0657710

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVQVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPSTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEVTKLTQSQKGVVIIKLEKGQPMPKPQLDLTKDFVYDIDAKKPDIKAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPAIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPQFFVVAKVAGEDGMESYSIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQELFISKTTETTSLILPTI*