AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0828960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828960 MtrunA17_Chr8g0380731 94.150 359 20 1 1 358 1 359 0.0 676
Msa0828960 MtrunA17_Chr8g0380741 85.196 358 53 0 1 358 1 358 0.0 610
Msa0828960 MtrunA17_Chr8g0380751 71.667 300 85 0 29 328 1 300 2.18e-156 441
Msa0828960 MtrunA17_Chr4g0030791 42.697 356 202 2 1 356 1 354 2.38e-106 316
Msa0828960 MtrunA17_Chr4g0036721 42.416 356 203 2 1 356 1 354 2.78e-105 313
Msa0828960 MtrunA17_Chr4g0030781 42.135 356 204 2 1 356 1 354 6.93e-105 312
Msa0828960 MtrunA17_Chr4g0014171 42.416 356 203 2 1 356 1 354 1.60e-104 311
Msa0828960 MtrunA17_Chr5g0405881 33.333 255 127 4 96 348 33 246 5.35e-37 134
Msa0828960 MtrunA17_Chr7g0261351 21.543 376 209 9 46 336 158 532 8.43e-13 69.3
Msa0828960 MtrunA17_Chr1g0185841 31.944 144 87 3 200 333 410 552 5.90e-12 67.0
Msa0828960 MtrunA17_Chr1g0185811 35.185 108 69 1 200 307 426 532 1.02e-11 66.2
Msa0828960 MtrunA17_Chr1g0185821 34.545 110 71 1 198 307 393 501 1.22e-11 65.9
Msa0828960 MtrunA17_Chr2g0326201 28.488 172 108 7 191 357 81 242 5.34e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828960 AT1G07750.1 41.972 355 202 3 1 355 1 351 4.90e-100 300
Msa0828960 AT2G28680.1 41.737 357 206 2 1 357 1 355 2.70e-99 298
Msa0828960 AT1G03890.1 25.616 406 225 14 17 352 53 451 2.05e-22 98.2
Msa0828960 AT5G44120.3 23.245 413 236 12 13 351 49 454 5.33e-20 91.3
Msa0828960 AT1G03880.1 22.469 405 242 10 13 351 43 441 6.54e-20 90.9
Msa0828960 AT2G28490.1 23.373 415 244 14 8 357 89 494 2.65e-16 80.5
Msa0828960 AT5G44120.1 32.484 157 105 1 195 351 112 267 5.27e-16 77.8
Msa0828960 AT5G44120.2 32.484 157 105 1 195 351 195 350 1.20e-15 77.8
Msa0828960 AT4G28520.1 31.847 157 106 1 195 351 350 505 1.60e-14 75.1
Msa0828960 AT4G28520.3 32.484 157 105 1 195 351 279 434 4.13e-14 73.6

Find 101 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTATTGTAAGCATAAT+TGG 0.126568 5_4:+1916683 None:intergenic
GATCTTAACATTATATTTCT+TGG 0.148846 5_4:-1914387 Msa0828960:CDS
TCCACTCATAAGAAATTTAT+TGG 0.149911 5_4:+1913349 None:intergenic
TTGTGACTAATCCCACATTT+TGG 0.188452 5_4:+1914103 None:intergenic
CGATAATTAAAATTTATTAA+TGG 0.209904 5_4:+1913197 None:intergenic
ACTTGAACCTAATGCTATTA+AGG 0.231472 5_4:-1914019 Msa0828960:CDS
AACCCAACATCCTTAATAAA+AGG 0.256810 5_4:+1914060 None:intergenic
ATCCAATTATGCTTACAATA+AGG 0.264684 5_4:-1916685 Msa0828960:five_prime_UTR
ACTGAATCGCAGGGGTAATT+AGG 0.266264 5_4:+1913986 None:intergenic
AAGCTCACACAAAGCCAAAA+AGG 0.266595 5_4:-1914234 Msa0828960:CDS
TGTTGGGTTAAGTGTGATTA+GGG 0.277054 5_4:-1914046 Msa0828960:CDS
ATGTTGGGTTAAGTGTGATT+AGG 0.298094 5_4:-1914047 Msa0828960:CDS
AGGAAAATCTTTATCCGTTA+AGG 0.313076 5_4:+1914080 None:intergenic
AGCAACGAACTCAGCAATAT+TGG 0.322815 5_4:+1916487 None:intergenic
TATAAACAAGTCAAACTAAA+TGG 0.330642 5_4:+1913382 None:intergenic
CTAGAAGAAATCAATGGATT+TGG 0.338018 5_4:-1915126 Msa0828960:exon
GTGATAATCAAGTTAGAAAA+AGG 0.339715 5_4:-1914207 Msa0828960:CDS
TCCAATTATGCTTACAATAA+GGG 0.343288 5_4:-1916684 Msa0828960:five_prime_UTR
TACCTATTGGAGGTGTTTCA+TGG 0.356456 5_4:-1914431 Msa0828960:CDS
TTTGTGGTTGCTAAAGTTGC+TGG 0.378074 5_4:-1913853 Msa0828960:CDS
ATGGTGGTGGTTACTACATT+TGG 0.379198 5_4:-1915064 Msa0828960:CDS
ATACAACTCTACCCACCATT+TGG 0.381031 5_4:+1913240 None:intergenic
ACATTAGTCTTAGCCAAAAC+TGG 0.384648 5_4:+1915026 None:intergenic
ATAGAAATTGTGGGATTGAA+TGG 0.390973 5_4:-1913934 Msa0828960:CDS
CCACTCATAAGAAATTTATT+GGG 0.391366 5_4:+1913350 None:intergenic
GAAGGTGCCTTAATAGCATT+AGG 0.400052 5_4:+1914012 None:intergenic
CATAAACAAAGTCTTTAGTT+AGG 0.401436 5_4:+1914157 None:intergenic
ACTTCAATAGCTCATGTTCC+AGG 0.412111 5_4:-1914360 Msa0828960:CDS
ATTTACATTGCTAGAGGAAG+TGG 0.419131 5_4:-1913961 Msa0828960:CDS
ACCTATGCCTAAGCCACAAT+TGG 0.420447 5_4:-1914181 Msa0828960:CDS
AAGTTCTCAAGTTCCAGTTT+TGG 0.422771 5_4:-1915039 Msa0828960:CDS
CCCAATAAATTTCTTATGAG+TGG 0.423152 5_4:-1913350 Msa0828960:three_prime_UTR
TACAACTCTACCCACCATTT+GGG 0.435680 5_4:+1913241 None:intergenic
TAGCCGGAGAGACATCAGTA+TGG 0.435918 5_4:-1913511 Msa0828960:CDS
TGAATACTGATACGATTAGC+TGG 0.443656 5_4:+1916641 None:intergenic
ATTAATAAACCCTTCCCAAA+TGG 0.445272 5_4:-1913255 Msa0828960:three_prime_UTR
GTTAGGTCCAATTGTGGCTT+AGG 0.462868 5_4:+1914174 None:intergenic
GTCAACTTGTTCTTCAGCCA+AGG 0.466314 5_4:-1914995 Msa0828960:CDS
TGTATGTCATGATGTTATAC+AGG 0.466718 5_4:-1913222 Msa0828960:three_prime_UTR
GGGATTAGTCACAACCTTAA+CGG 0.468943 5_4:-1914094 Msa0828960:CDS
AGCAATGGTTGTGCTGTCTT+CGG 0.471177 5_4:+1915095 None:intergenic
GATGTCATACCTGTACCTAT+TGG 0.485348 5_4:-1914444 Msa0828960:CDS
GCAGGGACTGATGGTGTAGT+TGG 0.493416 5_4:-1914519 Msa0828960:intron
TGTCTTGGATGCTCAAGTTA+AGG 0.494376 5_4:-1913905 Msa0828960:CDS
GCTAAAGTTGCTGGTGAAGA+TGG 0.496979 5_4:-1913844 Msa0828960:CDS
ATGTAAATCAACTGAATCGC+AGG 0.497055 5_4:+1913976 None:intergenic
AAAGTGGGTTATGTCATAGA+AGG 0.498483 5_4:-1914939 Msa0828960:intron
GCAGGGGTAATTAGGTTTGA+AGG 0.504754 5_4:+1913994 None:intergenic
CACCATGAAACACCTCCAAT+AGG 0.508936 5_4:+1914429 None:intergenic
GAGAATAAGCCTCTCATGGT+TGG 0.528668 5_4:+1913110 None:intergenic
AGCCGGAGAGACATCAGTAT+GGG 0.531399 5_4:-1913510 Msa0828960:CDS
AATAAACCCTTCCCAAATGG+TGG 0.531487 5_4:-1913252 Msa0828960:three_prime_UTR
AACAAGTCAAACTAAATGGT+AGG 0.531603 5_4:+1913386 None:intergenic
AAAGACACTTGTTGCACAGT+AGG 0.532747 5_4:+1913476 None:intergenic
GTTTCATGGTGGTTCAATGA+TGG 0.534589 5_4:-1914417 Msa0828960:CDS
GCTAAGACTAATGTTGGTGC+TGG 0.541420 5_4:-1915017 Msa0828960:CDS
CAACCATTGCTTGAGGGAGA+TGG 0.544530 5_4:-1915083 Msa0828960:CDS
CAAAGGCTAGAAGAAATCAA+TGG 0.544738 5_4:-1915132 Msa0828960:intron
TCAACTTGTTCTTCAGCCAA+GGG 0.545644 5_4:-1914994 Msa0828960:CDS
ATTGAATGGAAAACGTGTCT+TGG 0.545710 5_4:-1913920 Msa0828960:CDS
CTCTACCCACCATTTGGGAA+GGG 0.551588 5_4:+1913246 None:intergenic
TTGTCAAACGCAGGGACTGA+TGG 0.552548 5_4:-1914528 Msa0828960:intron
TTGGATGCTCAAGTTAAGGC+TGG 0.552687 5_4:-1913901 Msa0828960:CDS
AGATATTAAGGCCCAAAATG+TGG 0.553793 5_4:-1914115 Msa0828960:CDS
TTGTTCGAATCTGCATAATG+AGG 0.553966 5_4:+1914960 None:intergenic
CCTTTGTTTGAAGAGTTAGC+CGG 0.556322 5_4:-1913527 Msa0828960:CDS
GTCATACCTGTACCTATTGG+AGG 0.560557 5_4:-1914441 Msa0828960:CDS
TCCAATTGTGGCTTAGGCAT+AGG 0.563240 5_4:+1914180 None:intergenic
TTGCTTGAGGGAGATGGTGG+TGG 0.563550 5_4:-1915077 Msa0828960:CDS
TCCCCATACTGATGTCTCTC+CGG 0.565683 5_4:+1913508 None:intergenic
GGAATGGTACTCCCCAGCAC+TGG 0.566146 5_4:-1914498 Msa0828960:CDS
ACAGCACAACCATTGCTTGA+GGG 0.569100 5_4:-1915089 Msa0828960:CDS
AAAGTCCTTGAACACCACTT+AGG 0.569759 5_4:+1914319 None:intergenic
GAAACACCTCCAATAGGTAC+AGG 0.571470 5_4:+1914435 None:intergenic
ACAAGTCAAACTAAATGGTA+GGG 0.575189 5_4:+1913387 None:intergenic
TCTTTAGTTAGGTCCAATTG+TGG 0.584862 5_4:+1914168 None:intergenic
ACTCTACCCACCATTTGGGA+AGG 0.584895 5_4:+1913245 None:intergenic
AGTTGCTGGTGAAGATGGAA+TGG 0.592132 5_4:-1913839 Msa0828960:CDS
GATATTAAGGCCCAAAATGT+GGG 0.596263 5_4:-1914114 Msa0828960:CDS
GAATACTGATACGATTAGCT+GGG 0.600142 5_4:+1916642 None:intergenic
CAGTTGATTTACATTGCTAG+AGG 0.600562 5_4:-1913967 Msa0828960:CDS
TGTAAATCAACTGAATCGCA+GGG 0.608323 5_4:+1913977 None:intergenic
CCACCATCTCCCTCAAGCAA+TGG 0.609709 5_4:+1915080 None:intergenic
TGAGGAAGAGCAAATCCCCT+TGG 0.612076 5_4:+1914978 None:intergenic
TATGCAGATTCGAACAAAGT+GGG 0.614043 5_4:-1914954 Msa0828960:CDS
GACTGATGGTGTAGTTGGAA+TGG 0.615110 5_4:-1914514 Msa0828960:CDS
TACGCATCAAGATCAATCGC+AGG 0.619713 5_4:-1916446 Msa0828960:intron
ATAAACCCTTCCCAAATGGT+GGG 0.621623 5_4:-1913251 Msa0828960:three_prime_UTR
GGTAGGGAGAATGAGACTTG+TGG 0.625569 5_4:+1913403 None:intergenic
TTATGCAGATTCGAACAAAG+TGG 0.626214 5_4:-1914955 Msa0828960:CDS
CAACTTGTTCTTCAGCCAAG+GGG 0.631432 5_4:-1914993 Msa0828960:CDS
ATGTGAATTGTGAAACGACA+TGG 0.633456 5_4:-1913137 Msa0828960:three_prime_UTR
CCGGCTAACTCTTCAAACAA+AGG 0.634501 5_4:+1913527 None:intergenic
GACAGCACAACCATTGCTTG+AGG 0.639965 5_4:-1915090 Msa0828960:CDS
CTATTGGAGGTGTTTCATGG+TGG 0.653727 5_4:-1914428 Msa0828960:CDS
CCATTGCTTGAGGGAGATGG+TGG 0.656696 5_4:-1915080 Msa0828960:CDS
CGTGAATGCGTTGAAGACTG+AGG 0.665241 5_4:+1916525 None:intergenic
TTGTTGCACAGTAGGTGACA+AGG 0.665977 5_4:+1913484 None:intergenic
GCCGGAGAGACATCAGTATG+GGG 0.687095 5_4:-1913509 Msa0828960:CDS
GTGAATGCGTTGAAGACTGA+GGG 0.696537 5_4:+1916526 None:intergenic
GTAAATCAACTGAATCGCAG+GGG 0.708656 5_4:+1913978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATAATTTTTTAATAAT+TGG + chr5_4:1915002-1915021 None:intergenic 0.0%
!!! TTTTTTTTTTGACAAAAAAT+GGG + chr5_4:1915041-1915060 None:intergenic 10.0%
!!! TTTTTTTTTTTGACAAAAAA+TGG + chr5_4:1915042-1915061 None:intergenic 10.0%
!!! AAAACAAAATTTTAACAATA+TGG + chr5_4:1915184-1915203 None:intergenic 10.0%
!!! TTTTTTTTATTGAATATGTA+TGG - chr5_4:1916488-1916507 Msa0828960:five_prime_UTR 10.0%
!! CGATAATTAAAATTTATTAA+TGG + chr5_4:1916617-1916636 None:intergenic 10.0%
!!! AATCAAAAAATTGTTTTTGA+AGG + chr5_4:1913704-1913723 None:intergenic 15.0%
!!! TTCAAAAACAATTTTTTGAT+TGG - chr5_4:1913703-1913722 Msa0828960:intron 15.0%
!! AAAATAAAATGAATCCTAAT+TGG - chr5_4:1913733-1913752 Msa0828960:intron 15.0%
!! TCAAAAAAATTAATATTGTG+AGG - chr5_4:1914060-1914079 Msa0828960:CDS 15.0%
!!! AAATAGGAGTATATATTTTA+AGG - chr5_4:1914274-1914293 Msa0828960:CDS 15.0%
!!! AATAGGAGTATATATTTTAA+GGG - chr5_4:1914275-1914294 Msa0828960:CDS 15.0%
!! TTCACGTAATAATTAAAAAA+TGG + chr5_4:1914480-1914499 None:intergenic 15.0%
!! TATTAACTTTCAAACTTATT+AGG + chr5_4:1914534-1914553 None:intergenic 15.0%
!!! ATACAATTTTAATAAAGATG+AGG - chr5_4:1915549-1915568 Msa0828960:intron 15.0%
!!! TAAAGATTTTCCTTTTATTA+AGG - chr5_4:1915741-1915760 Msa0828960:intron 15.0%
!!! ATTTGAAATTATTTTCGATT+TGG - chr5_4:1916197-1916216 Msa0828960:intron 15.0%
!!! GTAATTGAATTTGTTTTTTG+CGG + chr5_4:1913214-1913233 None:intergenic 20.0%
!!! TTTTTACATATAATTGTGTC+CGG - chr5_4:1914558-1914577 Msa0828960:intron 20.0%
!! GATCTTAACATTATATTTCT+TGG - chr5_4:1915424-1915443 Msa0828960:intron 20.0%
!! TGAATGAAAATTGAATTCTT+CGG + chr5_4:1916132-1916151 None:intergenic 20.0%
!!! TTTTGATTCACAAATCAATT+TGG - chr5_4:1916163-1916182 Msa0828960:intron 20.0%
!! TATAAACAAGTCAAACTAAA+TGG + chr5_4:1916432-1916451 None:intergenic 20.0%
! ATCCAATTATGCTTACAATA+AGG - chr5_4:1913126-1913145 Msa0828960:three_prime_UTR 25.0%
! TCCAATTATGCTTACAATAA+GGG - chr5_4:1913127-1913146 Msa0828960:three_prime_UTR 25.0%
!!! TTTCTTAGTTTGTTAAAGAC+AGG + chr5_4:1913845-1913864 None:intergenic 25.0%
! TAAGACAAAACTTCTATTTG+TGG + chr5_4:1914340-1914359 None:intergenic 25.0%
! ATGAAGTATATATTGTGTGT+TGG - chr5_4:1914581-1914600 Msa0828960:intron 25.0%
!!! ACTGCTTTTTGAACTAAAAA+TGG - chr5_4:1914619-1914638 Msa0828960:intron 25.0%
!!! AATGTTTTTTTCATGAGCAA+AGG - chr5_4:1914662-1914681 Msa0828960:intron 25.0%
! ATCTCTTAGATTTAATCTGT+TGG - chr5_4:1914929-1914948 Msa0828960:intron 25.0%
!!! CCATTTTTAGGTACTTAAAT+GGG + chr5_4:1915073-1915092 None:intergenic 25.0%
!!! TCCATTTTTAGGTACTTAAA+TGG + chr5_4:1915074-1915093 None:intergenic 25.0%
!!! CAATAGAAACATCCATTTTT+AGG + chr5_4:1915085-1915104 None:intergenic 25.0%
! TATGGAAAATCTTCATTCTA+GGG + chr5_4:1915228-1915247 None:intergenic 25.0%
! TTATGGAAAATCTTCATTCT+AGG + chr5_4:1915229-1915248 None:intergenic 25.0%
!! ATGTTGCGATACATATTTTA+TGG + chr5_4:1915246-1915265 None:intergenic 25.0%
! AAAAAATAAGTGAATTCTCC+TGG + chr5_4:1915472-1915491 None:intergenic 25.0%
!!! TTCACTTATTTTTTCCTAAG+TGG - chr5_4:1915478-1915497 Msa0828960:intron 25.0%
! GTGATAATCAAGTTAGAAAA+AGG - chr5_4:1915604-1915623 Msa0828960:intron 25.0%
! CATAAACAAAGTCTTTAGTT+AGG + chr5_4:1915657-1915676 None:intergenic 25.0%
! TGCTAAAAAACCAGATATTA+AGG - chr5_4:1915684-1915703 Msa0828960:intron 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG - chr5_4:1915748-1915767 Msa0828960:intron 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG - chr5_4:1915749-1915768 Msa0828960:intron 25.0%
! AAGTGGAAAAATAGAAATTG+TGG - chr5_4:1915867-1915886 Msa0828960:intron 25.0%
! AGTGGAAAAATAGAAATTGT+GGG - chr5_4:1915868-1915887 Msa0828960:intron 25.0%
! CCACTCATAAGAAATTTATT+GGG + chr5_4:1916464-1916483 None:intergenic 25.0%
! TCCACTCATAAGAAATTTAT+TGG + chr5_4:1916465-1916484 None:intergenic 25.0%
! TGTATGGAATTCATGTAATA+AGG - chr5_4:1916504-1916523 Msa0828960:five_prime_UTR 25.0%
TCCCTTATTGTAAGCATAAT+TGG + chr5_4:1913131-1913150 None:intergenic 30.0%
AAAATGAATCCTAATTGGCA+AGG - chr5_4:1913738-1913757 Msa0828960:intron 30.0%
TTGTTCAAATCTTCTGTTCT+TGG + chr5_4:1913906-1913925 None:intergenic 30.0%
GCAAAAATTAACTACTCGAT+TGG - chr5_4:1914037-1914056 Msa0828960:CDS 30.0%
CACACAATATATACTTCATC+CGG + chr5_4:1914580-1914599 None:intergenic 30.0%
! CTAGAAGAAATCAATGGATT+TGG - chr5_4:1914685-1914704 Msa0828960:intron 30.0%
CCCATTTAAGTACCTAAAAA+TGG - chr5_4:1915070-1915089 Msa0828960:CDS 30.0%
!!! GTTGTTTTGAAGCTTAAGAA+AGG - chr5_4:1915343-1915362 Msa0828960:intron 30.0%
AGGAAAATCTTTATCCGTTA+AGG + chr5_4:1915734-1915753 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG + chr5_4:1915754-1915773 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG - chr5_4:1915792-1915811 Msa0828960:intron 30.0%
ATAGAAATTGTGGGATTGAA+TGG - chr5_4:1915877-1915896 Msa0828960:intron 30.0%
TTAGCAACCACAAAAAATTG+TGG + chr5_4:1915952-1915971 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG + chr5_4:1916022-1916041 None:intergenic 30.0%
ACAAGTCAAACTAAATGGTA+GGG + chr5_4:1916427-1916446 None:intergenic 30.0%
AACAAGTCAAACTAAATGGT+AGG + chr5_4:1916428-1916447 None:intergenic 30.0%
CCCAATAAATTTCTTATGAG+TGG - chr5_4:1916461-1916480 Msa0828960:five_prime_UTR 30.0%
ATTAATAAACCCTTCCCAAA+TGG - chr5_4:1916556-1916575 Msa0828960:five_prime_UTR 30.0%
TGTATGTCATGATGTTATAC+AGG - chr5_4:1916589-1916608 Msa0828960:five_prime_UTR 30.0%
! GAATACTGATACGATTAGCT+GGG + chr5_4:1913172-1913191 None:intergenic 35.0%
TGAATACTGATACGATTAGC+TGG + chr5_4:1913173-1913192 None:intergenic 35.0%
!! TGTTCTGCAGAAGTATCTAT+AGG - chr5_4:1913642-1913661 Msa0828960:intron 35.0%
GGAAAAGAACACAAATTACG+TGG - chr5_4:1913794-1913813 Msa0828960:intron 35.0%
! TTAGTGGAGTGTCTATAGTA+AGG + chr5_4:1914142-1914161 None:intergenic 35.0%
! ATAGACACTCCACTAACTTT+TGG - chr5_4:1914146-1914165 Msa0828960:CDS 35.0%
TGTTTGTGTCCAAAAGTTAG+TGG + chr5_4:1914158-1914177 None:intergenic 35.0%
!! ATTAGTTCTGCAAGATTGCT+TGG + chr5_4:1914223-1914242 None:intergenic 35.0%
TCTTGTTAATCAGTGTCTCA+TGG - chr5_4:1914298-1914317 Msa0828960:CDS 35.0%
CTTGTTAATCAGTGTCTCAT+GGG - chr5_4:1914299-1914318 Msa0828960:CDS 35.0%
GTATATATTGTGTGTTGGAG+TGG - chr5_4:1914586-1914605 Msa0828960:intron 35.0%
CAAAGGCTAGAAGAAATCAA+TGG - chr5_4:1914679-1914698 Msa0828960:intron 35.0%
! AAGTTCTCAAGTTCCAGTTT+TGG - chr5_4:1914772-1914791 Msa0828960:intron 35.0%
!! ACATTAGTCTTAGCCAAAAC+TGG + chr5_4:1914788-1914807 None:intergenic 35.0%
!!! GTTTTGGCTAAGACTAATGT+TGG - chr5_4:1914788-1914807 Msa0828960:intron 35.0%
TTGTTCGAATCTGCATAATG+AGG + chr5_4:1914854-1914873 None:intergenic 35.0%
TTATGCAGATTCGAACAAAG+TGG - chr5_4:1914856-1914875 Msa0828960:intron 35.0%
TATGCAGATTCGAACAAAGT+GGG - chr5_4:1914857-1914876 Msa0828960:intron 35.0%
!! AAAGTGGGTTATGTCATAGA+AGG - chr5_4:1914872-1914891 Msa0828960:intron 35.0%
GTATCGCAACATCACTTATT+TGG - chr5_4:1915254-1915273 Msa0828960:intron 35.0%
! TTTTTCCTAAGTGGTGTTCA+AGG - chr5_4:1915487-1915506 Msa0828960:intron 35.0%
! TGATTATCACAACCCCTTTT+TGG + chr5_4:1915594-1915613 None:intergenic 35.0%
TCTTTAGTTAGGTCCAATTG+TGG + chr5_4:1915646-1915665 None:intergenic 35.0%
! ACATTTTGGGCCTTAATATC+TGG + chr5_4:1915697-1915716 None:intergenic 35.0%
AGATATTAAGGCCCAAAATG+TGG - chr5_4:1915696-1915715 Msa0828960:intron 35.0%
GATATTAAGGCCCAAAATGT+GGG - chr5_4:1915697-1915716 Msa0828960:intron 35.0%
! TGTGACTAATCCCACATTTT+GGG + chr5_4:1915710-1915729 None:intergenic 35.0%
! TTGTGACTAATCCCACATTT+TGG + chr5_4:1915711-1915730 None:intergenic 35.0%
ATGTTGGGTTAAGTGTGATT+AGG - chr5_4:1915764-1915783 Msa0828960:intron 35.0%
TGTTGGGTTAAGTGTGATTA+GGG - chr5_4:1915765-1915784 Msa0828960:intron 35.0%
TGTAAATCAACTGAATCGCA+GGG + chr5_4:1915837-1915856 None:intergenic 35.0%
ATGTAAATCAACTGAATCGC+AGG + chr5_4:1915838-1915857 None:intergenic 35.0%
! CAGTTGATTTACATTGCTAG+AGG - chr5_4:1915844-1915863 Msa0828960:intron 35.0%
ATTTACATTGCTAGAGGAAG+TGG - chr5_4:1915850-1915869 Msa0828960:intron 35.0%
ATTGAATGGAAAACGTGTCT+TGG - chr5_4:1915891-1915910 Msa0828960:intron 35.0%
!!! TGTTGTGCCACAATTTTTTG+TGG - chr5_4:1915942-1915961 Msa0828960:intron 35.0%
! CGATTTGGAGTACGTTATTA+AGG - chr5_4:1916212-1916231 Msa0828960:intron 35.0%
ATGTGAATTGTGAAACGACA+TGG - chr5_4:1916674-1916693 Msa0828960:five_prime_UTR 35.0%
AGCAACGAACTCAGCAATAT+TGG + chr5_4:1913327-1913346 None:intergenic 40.0%
! TCGAGCATCAGCTTAACTTT+TGG - chr5_4:1913499-1913518 Msa0828960:CDS 40.0%
! CGAGCATCAGCTTAACTTTT+GGG - chr5_4:1913500-1913519 Msa0828960:CDS 40.0%
CATCAATGTCCTTGCCAATT+AGG + chr5_4:1913750-1913769 None:intergenic 40.0%
TTGGCAAGGACATTGATGTA+CGG - chr5_4:1913752-1913771 Msa0828960:intron 40.0%
GTACGGCGGATAACTATATA+AGG - chr5_4:1913769-1913788 Msa0828960:intron 40.0%
GGCGGATAACTATATAAGGA+AGG - chr5_4:1913773-1913792 Msa0828960:intron 40.0%
AGGAAGAACAAATTCCTGGA+CGG + chr5_4:1913825-1913844 None:intergenic 40.0%
AGACAGGAAGAACAAATTCC+TGG + chr5_4:1913829-1913848 None:intergenic 40.0%
!! ATGGTGGTGGTTACTACATT+TGG - chr5_4:1914747-1914766 Msa0828960:intron 40.0%
! TCAACTTGTTCTTCAGCCAA+GGG - chr5_4:1914817-1914836 Msa0828960:intron 40.0%
TGGTCAAATTTGTCAAACGC+AGG - chr5_4:1915274-1915293 Msa0828960:intron 40.0%
GGTCAAATTTGTCAAACGCA+GGG - chr5_4:1915275-1915294 Msa0828960:intron 40.0%
! ACAACTTCTTTTCCAGTGCT+GGG + chr5_4:1915328-1915347 None:intergenic 40.0%
! AACAACTTCTTTTCCAGTGC+TGG + chr5_4:1915329-1915348 None:intergenic 40.0%
GATGTCATACCTGTACCTAT+TGG - chr5_4:1915367-1915386 Msa0828960:intron 40.0%
!! TACCTATTGGAGGTGTTTCA+TGG - chr5_4:1915380-1915399 Msa0828960:intron 40.0%
GTTTCATGGTGGTTCAATGA+TGG - chr5_4:1915394-1915413 Msa0828960:intron 40.0%
ACTTCAATAGCTCATGTTCC+AGG - chr5_4:1915451-1915470 Msa0828960:intron 40.0%
AAAGTCCTTGAACACCACTT+AGG + chr5_4:1915495-1915514 None:intergenic 40.0%
!!! TTTTTGGCTTTGTGTGAGCT+TGG + chr5_4:1915578-1915597 None:intergenic 40.0%
AAGCTCACACAAAGCCAAAA+AGG - chr5_4:1915577-1915596 Msa0828960:intron 40.0%
AGCTCACACAAAGCCAAAAA+GGG - chr5_4:1915578-1915597 Msa0828960:intron 40.0%
!! GGGATTAGTCACAACCTTAA+CGG - chr5_4:1915717-1915736 Msa0828960:intron 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG + chr5_4:1915802-1915821 None:intergenic 40.0%
GTAAATCAACTGAATCGCAG+GGG + chr5_4:1915836-1915855 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG - chr5_4:1915906-1915925 Msa0828960:intron 40.0%
TTTGTGGTTGCTAAAGTTGC+TGG - chr5_4:1915958-1915977 Msa0828960:intron 40.0%
GTGACAACTACCAAGTAAGT+TGG - chr5_4:1916009-1916028 Msa0828960:intron 40.0%
! CCTTTGTTTGAAGAGTTAGC+CGG - chr5_4:1916284-1916303 Msa0828960:intron 40.0%
! AAAGACACTTGTTGCACAGT+AGG + chr5_4:1916338-1916357 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG - chr5_4:1916343-1916362 Msa0828960:intron 40.0%
AATAAACCCTTCCCAAATGG+TGG - chr5_4:1916559-1916578 Msa0828960:five_prime_UTR 40.0%
ATAAACCCTTCCCAAATGGT+GGG - chr5_4:1916560-1916579 Msa0828960:five_prime_UTR 40.0%
TACAACTCTACCCACCATTT+GGG + chr5_4:1916573-1916592 None:intergenic 40.0%
ATACAACTCTACCCACCATT+TGG + chr5_4:1916574-1916593 None:intergenic 40.0%
GTGAATGCGTTGAAGACTGA+GGG + chr5_4:1913288-1913307 None:intergenic 45.0%
TACGCATCAAGATCAATCGC+AGG - chr5_4:1913365-1913384 Msa0828960:three_prime_UTR 45.0%
GGAAGAACAAATTCCTGGAC+GGG + chr5_4:1913824-1913843 None:intergenic 45.0%
! ATACATTCTGCTGAGTGCTG+AGG - chr5_4:1913964-1913983 Msa0828960:CDS 45.0%
CATTATCATCACGAGCAAGC+TGG - chr5_4:1914250-1914269 Msa0828960:CDS 45.0%
TCACGAGCAAGCTGGTAAAT+AGG - chr5_4:1914258-1914277 Msa0828960:CDS 45.0%
AATCAGTGTCTCATGGGCAT+TGG - chr5_4:1914305-1914324 Msa0828960:CDS 45.0%
!! TGCTTCTGAGGCATTGGTTA+AGG + chr5_4:1914437-1914456 None:intergenic 45.0%
AGCAATGGTTGTGCTGTCTT+CGG + chr5_4:1914719-1914738 None:intergenic 45.0%
ACAGCACAACCATTGCTTGA+GGG - chr5_4:1914722-1914741 Msa0828960:intron 45.0%
GCTAAGACTAATGTTGGTGC+TGG - chr5_4:1914794-1914813 Msa0828960:intron 45.0%
! GTCAACTTGTTCTTCAGCCA+AGG - chr5_4:1914816-1914835 Msa0828960:intron 45.0%
! CAACTTGTTCTTCAGCCAAG+GGG - chr5_4:1914818-1914837 Msa0828960:intron 45.0%
! GACTGATGGTGTAGTTGGAA+TGG - chr5_4:1915297-1915316 Msa0828960:intron 45.0%
! CAACTTCTTTTCCAGTGCTG+GGG + chr5_4:1915327-1915346 None:intergenic 45.0%
GTCATACCTGTACCTATTGG+AGG - chr5_4:1915370-1915389 Msa0828960:intron 45.0%
GAAACACCTCCAATAGGTAC+AGG + chr5_4:1915379-1915398 None:intergenic 45.0%
CACCATGAAACACCTCCAAT+AGG + chr5_4:1915385-1915404 None:intergenic 45.0%
!! CTATTGGAGGTGTTTCATGG+TGG - chr5_4:1915383-1915402 Msa0828960:intron 45.0%
GCTCACACAAAGCCAAAAAG+GGG - chr5_4:1915579-1915598 Msa0828960:intron 45.0%
ACCTATGCCTAAGCCACAAT+TGG - chr5_4:1915630-1915649 Msa0828960:intron 45.0%
TCCAATTGTGGCTTAGGCAT+AGG + chr5_4:1915634-1915653 None:intergenic 45.0%
GTTAGGTCCAATTGTGGCTT+AGG + chr5_4:1915640-1915659 None:intergenic 45.0%
GCAGGGGTAATTAGGTTTGA+AGG + chr5_4:1915820-1915839 None:intergenic 45.0%
ACTGAATCGCAGGGGTAATT+AGG + chr5_4:1915828-1915847 None:intergenic 45.0%
TTGGATGCTCAAGTTAAGGC+TGG - chr5_4:1915910-1915929 Msa0828960:intron 45.0%
GCTAAAGTTGCTGGTGAAGA+TGG - chr5_4:1915967-1915986 Msa0828960:intron 45.0%
AGTTGCTGGTGAAGATGGAA+TGG - chr5_4:1915972-1915991 Msa0828960:intron 45.0%
CCGGCTAACTCTTCAAACAA+AGG + chr5_4:1916287-1916306 None:intergenic 45.0%
TTGTTGCACAGTAGGTGACA+AGG + chr5_4:1916330-1916349 None:intergenic 45.0%
!!! TTATATGAATTTAATAATTT+TGG - chr5_4:1913410-1913429 Msa0828960:CDS 5.0%
CGTGAATGCGTTGAAGACTG+AGG + chr5_4:1913289-1913308 None:intergenic 50.0%
GCAAGGACATTGATGTACGG+CGG - chr5_4:1913755-1913774 Msa0828960:intron 50.0%
AGAACAAATTCCTGGACGGG+TGG + chr5_4:1913821-1913840 None:intergenic 50.0%
!! TGCATCTGCTTCTGAGGCAT+TGG + chr5_4:1914443-1914462 None:intergenic 50.0%
AACCAGTGCATCTGCTTCTG+AGG + chr5_4:1914449-1914468 None:intergenic 50.0%
GACAGCACAACCATTGCTTG+AGG - chr5_4:1914721-1914740 Msa0828960:intron 50.0%
CAACCATTGCTTGAGGGAGA+TGG - chr5_4:1914728-1914747 Msa0828960:intron 50.0%
TGAGGAAGAGCAAATCCCCT+TGG + chr5_4:1914836-1914855 None:intergenic 50.0%
TTGTCAAACGCAGGGACTGA+TGG - chr5_4:1915283-1915302 Msa0828960:intron 50.0%
TAGCCGGAGAGACATCAGTA+TGG - chr5_4:1916300-1916319 Msa0828960:intron 50.0%
AGCCGGAGAGACATCAGTAT+GGG - chr5_4:1916301-1916320 Msa0828960:intron 50.0%
TCCCCATACTGATGTCTCTC+CGG + chr5_4:1916306-1916325 None:intergenic 50.0%
GGTAGGGAGAATGAGACTTG+TGG + chr5_4:1916411-1916430 None:intergenic 50.0%
CTCTACCCACCATTTGGGAA+GGG + chr5_4:1916568-1916587 None:intergenic 50.0%
ACTCTACCCACCATTTGGGA+AGG + chr5_4:1916569-1916588 None:intergenic 50.0%
TGCCTCAGAAGCAGATGCAC+TGG - chr5_4:1914444-1914463 Msa0828960:CDS 55.0%
CCACCATCTCCCTCAAGCAA+TGG + chr5_4:1914734-1914753 None:intergenic 55.0%
CCATTGCTTGAGGGAGATGG+TGG - chr5_4:1914731-1914750 Msa0828960:intron 55.0%
! TTGCTTGAGGGAGATGGTGG+TGG - chr5_4:1914734-1914753 Msa0828960:intron 55.0%
! GCAGGGACTGATGGTGTAGT+TGG - chr5_4:1915292-1915311 Msa0828960:intron 55.0%
GCCGGAGAGACATCAGTATG+GGG - chr5_4:1916302-1916321 Msa0828960:intron 55.0%
ATTACGTGGTCCACCCGTCC+AGG - chr5_4:1913808-1913827 Msa0828960:intron 60.0%
GGAATGGTACTCCCCAGCAC+TGG - chr5_4:1915313-1915332 Msa0828960:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1913123 1916710 1913123 ID=Msa0828960;Name=Msa0828960
chr5_4 mRNA 1913123 1916710 1913123 ID=Msa0828960-mRNA-1;Parent=Msa0828960;Name=Msa0828960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=278|1|1|1|0.5|0.2|5|254|358
chr5_4 exon 1913123 1913308 1913123 ID=Msa0828960-mRNA-1:exon:544;Parent=Msa0828960-mRNA-1
chr5_4 exon 1913329 1913550 1913329 ID=Msa0828960-mRNA-1:exon:543;Parent=Msa0828960-mRNA-1
chr5_4 exon 1913811 1914537 1913811 ID=Msa0828960-mRNA-1:exon:542;Parent=Msa0828960-mRNA-1
chr5_4 exon 1914940 1915149 1914940 ID=Msa0828960-mRNA-1:exon:541;Parent=Msa0828960-mRNA-1
chr5_4 exon 1916447 1916710 1916447 ID=Msa0828960-mRNA-1:exon:540;Parent=Msa0828960-mRNA-1
chr5_4 five_prime_UTR 1916447 1916710 1916447 ID=Msa0828960-mRNA-1:five_prime_utr;Parent=Msa0828960-mRNA-1
chr5_4 five_prime_UTR 1915136 1915149 1915136 ID=Msa0828960-mRNA-1:five_prime_utr;Parent=Msa0828960-mRNA-1
chr5_4 CDS 1914940 1915135 1914940 ID=Msa0828960-mRNA-1:cds;Parent=Msa0828960-mRNA-1
chr5_4 CDS 1913811 1914537 1913811 ID=Msa0828960-mRNA-1:cds;Parent=Msa0828960-mRNA-1
chr5_4 CDS 1913397 1913550 1913397 ID=Msa0828960-mRNA-1:cds;Parent=Msa0828960-mRNA-1
chr5_4 three_prime_UTR 1913329 1913396 1913329 ID=Msa0828960-mRNA-1:three_prime_utr;Parent=Msa0828960-mRNA-1
chr5_4 three_prime_UTR 1913123 1913308 1913123 ID=Msa0828960-mRNA-1:three_prime_utr;Parent=Msa0828960-mRNA-1
Gene Sequence

>Msa0828960

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCCAGTTTTGGCTAAGACTAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGTGTAGTTGGAATGGTACTCCCCAGCACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGTGACCAAGCTCACACAAAGCCAAAAAGGGGTTGTGATAATCAAGTTAGAAAAAGGTCAACCTATGCCTAAGCCACAATTGGACCTAACTAAAGACTTTGTTTATGACATTGATGCTAAAAAACCAGATATTAAGGCCCAAAATGTGGGATTAGTCACAACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGGGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGCGATTCAGTTGATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACAATTTTTTGTGGTTGCTAAAGTTGCTGGTGAAGATGGAATGGAGAGTTACTCTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAGAACTTTTCATATCTAAGACTACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

Protein sequence

>Msa0828960

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVPVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPSTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEVTKLTQSQKGVVIIKLEKGQPMPKPQLDLTKDFVYDIDAKKPDIKAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPAIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPQFFVVAKVAGEDGMESYSIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQELFISKTTETTSLILPTI*