AlfalfaGEDB | Msa0786970

M. sativa cultivar zhongmu-4 / Msa0786970

KEGG: K02291
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00494.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786970	sp\|Q9SSU8\|PSY_DAUCA	70.844	391	100	3	3	379	4	394	0.0	565

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786970	A0A097KXR7	99.225	387	3	0	1	387	1	387	0.0	795

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028610	Msa0786970	0.846892	1.632520e-59	-8.615850e-47
Msa0035090	Msa0786970	0.803764	2.983760e-49	-8.615850e-47
Msa0038860	Msa0786970	0.806611	7.563283e-50	-8.615850e-47
Msa0076280	Msa0786970	0.848805	4.850006e-60	-8.615850e-47
Msa0083200	Msa0786970	0.806132	9.542203e-50	-8.615850e-47
Msa0124310	Msa0786970	0.824156	9.404760e-54	-8.615850e-47
Msa0175900	Msa0786970	0.803236	3.839410e-49	-8.615850e-47
Msa0181740	Msa0786970	0.821768	3.387928e-53	-8.615850e-47
Msa0187720	Msa0786970	0.805654	1.202375e-49	-8.615850e-47
Msa0192290	Msa0786970	-0.801454	8.935322e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786970	MtrunA17_Chr5g0442671	95.866	387	16	0	1	387	1	387	0.0	775
Msa0786970	MtrunA17_Chr3g0095661	80.506	395	64	4	1	385	1	392	0.0	646
Msa0786970	MtrunA17_Chr5g0433601	75.444	338	79	2	45	381	95	429	0.0	535
Msa0786970	MtrunA17_Chr3g0121311	64.329	328	109	2	53	380	57	376	1.07e-155	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0786970	AT5G17230.2	74.862	362	75	4	24	377	60	413	553
Msa0786970	AT5G17230.1	74.862	362	75	4	24	377	60	413	553
Msa0786970	AT5G17230.4	74.862	362	75	4	24	377	60	413	553
Msa0786970	AT5G17230.3	71.883	377	75	5	24	377	60	428	543

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Find 90 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTATATGGGCAATCTA+TGG	0.391917	5_2:+72596197	Msa0786970:CDS
AAATGGAGAAATTTCATGAA+GGG	0.583483	5_2:+72598127	Msa0786970:CDS
AACAACAATGCTGCCCAAAC+AGG	0.461744	5_2:-72598226	None:intergenic
AAGAACGCCGAAAAGCTATA+TGG	0.335633	5_2:+72596186	Msa0786970:CDS
AAGAGAAAAGAGTGTAAGAA+TGG	0.370228	5_2:+72594752	Msa0786970:CDS
AATGCTCTCTGTAGAAGCCT+TGG	0.487506	5_2:-72597249	None:intergenic
AATTCTGCTTATGATCGGTG+TGG	0.729934	5_2:+72594960	Msa0786970:CDS
ACACATCACACCAGCAGCCT+TGG	0.504549	5_2:+72596403	Msa0786970:CDS
ACCAATGTACTCAGAGATGT+TGG	0.536558	5_2:+72597311	Msa0786970:CDS
ACCAGCAGCCTTGGACAGAT+GGG	0.533995	5_2:+72596412	Msa0786970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGGTTCTCAATGATATAT+AGG	-	chr5_2:72594538-72594557	None:intergenic	30.0%
GGACACTATAAAAAAAGAGA+GGG	-	chr5_2:72594626-72594645	None:intergenic	30.0%
TGGACACTATAAAAAAAGAG+AGG	-	chr5_2:72594627-72594646	None:intergenic	30.0%
GAATTGTGATGCAAAATCAT+TGG	+	chr5_2:72594707-72594726	Msa0786970:CDS	30.0%
AATACCTAGGTAAAAAGTCT+TGG	-	chr5_2:72595006-72595025	None:intergenic	30.0%
CCAATGAAACTTACGAAAAA+TGG	-	chr5_2:72595146-72595165	None:intergenic	30.0%
TCTTCATTCTTGAATATGTG+TGG	-	chr5_2:72595183-72595202	None:intergenic	30.0%
ACTGAGTCTATGAAAGTTAT+TGG	+	chr5_2:72595376-72595395	Msa0786970:intron	30.0%
CTGAGTCTATGAAAGTTATT+GGG	+	chr5_2:72595377-72595396	Msa0786970:intron	30.0%
AATGAGTCAATGGAAGTTAA+AGG	+	chr5_2:72595402-72595421	Msa0786970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	72594453	72598594	72594453	ID=Msa0786970;Name=Msa0786970
chr5_2	mRNA	72594453	72598594	72594453	ID=Msa0786970-mRNA-1;Parent=Msa0786970;Name=Msa0786970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231\|1\|1\|1\|1\|1\|5\|189\|388
chr5_2	exon	72594453	72595020	72594453	ID=Msa0786970-mRNA-1:exon:22056;Parent=Msa0786970-mRNA-1
chr5_2	exon	72596168	72596218	72596168	ID=Msa0786970-mRNA-1:exon:22057;Parent=Msa0786970-mRNA-1
chr5_2	exon	72596357	72596529	72596357	ID=Msa0786970-mRNA-1:exon:22058;Parent=Msa0786970-mRNA-1
chr5_2	exon	72597104	72597339	72597104	ID=Msa0786970-mRNA-1:exon:22059;Parent=Msa0786970-mRNA-1
chr5_2	exon	72598036	72598594	72598036	ID=Msa0786970-mRNA-1:exon:22060;Parent=Msa0786970-mRNA-1
chr5_2	five_prime_UTR	72594453	72594683	72594453	ID=Msa0786970-mRNA-1:five_prime_utr;Parent=Msa0786970-mRNA-1
chr5_2	CDS	72594684	72595020	72594684	ID=Msa0786970-mRNA-1:cds;Parent=Msa0786970-mRNA-1
chr5_2	CDS	72596168	72596218	72596168	ID=Msa0786970-mRNA-1:cds;Parent=Msa0786970-mRNA-1
chr5_2	CDS	72596357	72596529	72596357	ID=Msa0786970-mRNA-1:cds;Parent=Msa0786970-mRNA-1
chr5_2	CDS	72597104	72597339	72597104	ID=Msa0786970-mRNA-1:cds;Parent=Msa0786970-mRNA-1
chr5_2	CDS	72598036	72598405	72598036	ID=Msa0786970-mRNA-1:cds;Parent=Msa0786970-mRNA-1
chr5_2	three_prime_UTR	72598406	72598594	72598406	ID=Msa0786970-mRNA-1:three_prime_utr;Parent=Msa0786970-mRNA-1

Gene Sequence

>Msa0786970

ATGTCTAGTATTGTTGTTAGGGTGAATTGTGATGCAAAATCATTGGTGGGTATTTCTAGAATTGGAAGAAGAGAAAAGAGTGTAAGAATGGGTTCTAGGATAAGGTTTGGAAGTGGGGGTGCAGTGGTAGCAGAACCTTCAAGAAGTTCAGAGGAGAGGGTGTATGAAGTAGTTTTGAAGCAAGCAGGTTTGGTGAGAGAAGATAGGAGGGGTGCAAATATAGAATTTGATTTTGAGAAAACAATTGAAGGTGATTTTAGCAATGGAGATTTATTGAATTCTGCTTATGATCGGTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTTACCTAGGTACACAATTGATGACACAAGAACGCCGAAAAGCTATATGGGCAATCTATGTATGGTGTAGAAGAACTGATGAACTAGTAGATGGCCCAAATGCTTCACACATCACACCAGCAGCCTTGGACAGATGGGAGCAACGGTTAACTGATGTTTTTGAATGTCGACCATATGATATGTTTGATGCTGCTCTCTCACACACTGTCTCTAAGTACCCTGTTGATATTCAGCCATTCAAGGACATGATAGAAGGGATGAGGATGGATTTGAGAAAGTCAAGATACAACAACTTTGATGAGCTCTACCTTTATTGTTACTATGTTGCTGGGACAGTAGGTCTTATGAGTGTTCCTGTAATGGGAATAGCACCTGAATCCAAGGCTTCTACAGAGAGCATTTATAATGCTGCATTGGCACTAGGCATTGCAAATCAACTCACCAATGTACTCAGAGATGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTATCTCCCTCAAGATGAGCTAGCACAAGCTGGCCTATCAGATGAAGACATTATGCGTGGAAAAGTAACAGACAAATGGAGAAATTTCATGAAGGGACAAATAAAAAGAGCAAGAATGTTCTTTGATGAAGCAGAAAAGGGTGTTTCAGAGCTCAGTTCTGCTAGTAGATGGCCTGTTTGGGCAGCATTGTTGTTATATAGGCAGATATTAGATTCCATTGAAGCCAATGATTATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAGTCAATAAGCTATTATCACTACCAGCTGCTTATGGAACTGCACTTTTAGGTCCTAAAAAGTTAACCAAATTGTTTATGATATGA

Protein sequence

>Msa0786970

MSSIVVRVNCDAKSLVGISRIGRREKSVRMGSRIRFGSGGAVVAEPSRSSEERVYEVVLKQAGLVREDRRGANIEFDFEKTIEGDFSNGDLLNSAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEQRLTDVFECRPYDMFDAALSHTVSKYPVDIQPFKDMIEGMRMDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESIYNAALALGIANQLTNVLRDVGEDARRGRVYLPQDELAQAGLSDEDIMRGKVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWAALLLYRQILDSIEANDYNNFTKRAYVGKVNKLLSLPAAYGTALLGPKKLTKLFMI*