Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276280 | XP_013462859.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276280 | sp|O65451|FB333_ARATH | 47.936 | 436 | 203 | 9 | 1 | 430 | 1 | 418 | 5.25e-127 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276280 | A0A072V4I9 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012100 | Msa0276280 | 0.813048 | 3.117857e-51 | -8.615850e-47 |
| Msa0061500 | Msa0276280 | 0.800366 | 1.490845e-48 | -8.615850e-47 |
| Msa0152560 | Msa0276280 | 0.829512 | 4.939030e-55 | -8.615850e-47 |
| Msa0187830 | Msa0276280 | 0.837906 | 3.943142e-57 | -8.615850e-47 |
| Msa0189610 | Msa0276280 | 0.806295 | 8.818940e-50 | -8.615850e-47 |
| Msa0201570 | Msa0276280 | 0.834368 | 3.120330e-56 | -8.615850e-47 |
| Msa0244140 | Msa0276280 | 0.816655 | 4.943334e-52 | -8.615850e-47 |
| Msa0244190 | Msa0276280 | 0.812069 | 5.104320e-51 | -8.615850e-47 |
| Msa0276280 | Msa0304100 | 0.805719 | 1.165414e-49 | -8.615850e-47 |
| Msa0276280 | Msa0319290 | 0.802971 | 4.355665e-49 | -8.615850e-47 |
| Msa0276280 | Msa0322680 | 0.809384 | 1.942958e-50 | -8.615850e-47 |
| Msa0276280 | Msa0333650 | 0.802254 | 6.121293e-49 | -8.615850e-47 |
| Msa0276280 | Msa0382490 | 0.804070 | 2.577143e-49 | -8.615850e-47 |
| Msa0276280 | Msa0641340 | 0.801801 | 7.585566e-49 | -8.615850e-47 |
| Msa0276280 | Msa0674310 | 0.821859 | 3.226807e-53 | -8.615850e-47 |
| Msa0276280 | Msa0689780 | 0.816295 | 5.953127e-52 | -8.615850e-47 |
| Msa0276280 | Msa0708310 | 0.809134 | 2.198670e-50 | -8.615850e-47 |
| Msa0276280 | Msa0809140 | 0.802966 | 4.364534e-49 | -8.615850e-47 |
| Msa0276280 | Msa0849810 | 0.800935 | 1.141206e-48 | -8.615850e-47 |
| Msa0276280 | Msa1107190 | 0.806578 | 7.686056e-50 | -8.615850e-47 |
| Msa0276280 | Msa1225100 | 0.819906 | 9.079688e-53 | -8.615850e-47 |
| Msa0276280 | Msa1246700 | 0.828752 | 7.549727e-55 | -8.615850e-47 |
| Msa0276280 | Msa1262020 | 0.824900 | 6.283153e-54 | -8.615850e-47 |
| Msa0276280 | Msa1280150 | 0.823057 | 1.699968e-53 | -8.615850e-47 |
| Msa0276280 | Msa1329870 | 0.819975 | 8.756228e-53 | -8.615850e-47 |
| Msa0276280 | Msa1338400 | 0.801382 | 9.243312e-49 | -8.615850e-47 |
| Msa0276280 | Msa1353890 | 0.807121 | 5.900340e-50 | -8.615850e-47 |
| Msa0276280 | Msa1365270 | 0.819597 | 1.068206e-52 | -8.615850e-47 |
| Msa0276280 | Msa1376450 | 0.820586 | 6.343311e-53 | -8.615850e-47 |
| Msa0276280 | Msa1391550 | 0.800263 | 1.564659e-48 | -8.615850e-47 |
| Msa0276280 | Msa1405220 | 0.819347 | 1.218405e-52 | -8.615850e-47 |
| Msa0276280 | Msa1420270 | 0.821146 | 4.714753e-53 | -8.615850e-47 |
| Msa0276280 | Msa1424630 | 0.829834 | 4.124252e-55 | -8.615850e-47 |
| Msa0276280 | Msa1457160 | 0.826137 | 3.199630e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276280 | MtrunA17_Chr2g0288751 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa0276280 | MtrunA17_Chr2g0288681 | 95.823 | 407 | 17 | 0 | 24 | 430 | 26 | 432 | 0.0 | 783 |
| Msa0276280 | MtrunA17_Chr2g0288641 | 95.577 | 407 | 17 | 1 | 24 | 430 | 26 | 431 | 0.0 | 776 |
| Msa0276280 | MtrunA17_Chr2g0288801 | 57.727 | 440 | 159 | 7 | 1 | 430 | 1 | 423 | 6.92e-177 | 500 |
| Msa0276280 | MtrunA17_Chr2g0288651 | 57.727 | 440 | 159 | 7 | 1 | 430 | 1 | 423 | 1.18e-176 | 500 |
| Msa0276280 | MtrunA17_Chr2g0288711 | 59.091 | 440 | 147 | 9 | 1 | 430 | 1 | 417 | 5.52e-174 | 493 |
| Msa0276280 | MtrunA17_Chr2g0288791 | 58.216 | 426 | 146 | 5 | 17 | 430 | 19 | 424 | 2.07e-168 | 479 |
| Msa0276280 | MtrunA17_Chr2g0288671 | 58.852 | 418 | 154 | 6 | 18 | 430 | 20 | 424 | 2.60e-167 | 476 |
| Msa0276280 | MtrunA17_Chr2g0288721 | 66.667 | 351 | 111 | 2 | 81 | 430 | 79 | 424 | 2.81e-167 | 476 |
| Msa0276280 | MtrunA17_Chr4g0075161 | 60.539 | 408 | 149 | 8 | 29 | 430 | 27 | 428 | 4.93e-158 | 453 |
| Msa0276280 | MtrunA17_Chr4g0075151 | 57.143 | 413 | 164 | 7 | 19 | 430 | 24 | 424 | 3.54e-153 | 440 |
| Msa0276280 | MtrunA17_Chr2g0288821 | 49.524 | 420 | 178 | 8 | 17 | 430 | 28 | 419 | 1.94e-132 | 387 |
| Msa0276280 | MtrunA17_Chr2g0288771 | 60.920 | 174 | 64 | 1 | 257 | 430 | 6 | 175 | 4.06e-73 | 227 |
| Msa0276280 | MtrunA17_Chr2g0288691 | 63.855 | 166 | 60 | 0 | 265 | 430 | 8 | 173 | 3.87e-70 | 219 |
| Msa0276280 | MtrunA17_Chr2g0288731 | 53.202 | 203 | 64 | 2 | 228 | 430 | 1 | 172 | 9.16e-70 | 218 |
| Msa0276280 | MtrunA17_Chr2g0288781 | 78.947 | 95 | 18 | 2 | 93 | 186 | 29 | 122 | 3.18e-28 | 107 |
| Msa0276280 | MtrunA17_Chr2g0288701 | 49.231 | 130 | 56 | 5 | 20 | 144 | 30 | 154 | 3.41e-26 | 104 |
| Msa0276280 | MtrunA17_Chr2g0288761 | 51.613 | 93 | 42 | 1 | 338 | 430 | 1 | 90 | 2.51e-23 | 93.6 |
| Msa0276280 | MtrunA17_Chr2g0288741 | 73.418 | 79 | 18 | 1 | 103 | 178 | 1 | 79 | 5.05e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276280 | AT4G22030.1 | 49.083 | 436 | 198 | 9 | 1 | 430 | 1 | 418 | 5.32e-137 | 399 |
| Msa0276280 | AT4G04480.1 | 47.344 | 433 | 190 | 10 | 1 | 430 | 1 | 398 | 8.18e-127 | 372 |
Find 75 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAATTGGCTTTGAAATT+AGG | 0.156155 | 2_3:+8537953 | Msa0276280:CDS |
| CTTCTAGATGATTTCTTTGT+AGG | 0.177364 | 2_3:-8537506 | None:intergenic |
| TTGGCGAACAACGCGATAAT+TGG | 0.186326 | 2_3:+8537099 | Msa0276280:CDS |
| CACATATATGGCTTCCTTAC+AGG | 0.196488 | 2_3:+8536773 | None:intergenic |
| GATGAAGAACAAAGAGAAAA+TGG | 0.209588 | 2_3:+8537917 | Msa0276280:CDS |
| AGATTTGTTTGAAATTAAAT+TGG | 0.257786 | 2_3:+8537940 | Msa0276280:CDS |
| AGAAGAAGGAGAATTGTAAT+TGG | 0.266276 | 2_3:-8536988 | None:intergenic |
| TTTGTAGGCCTCCAATTTGC+AGG | 0.291600 | 2_3:-8537491 | None:intergenic |
| GCATATCCACTTCCTTTGTT+AGG | 0.298799 | 2_3:+8537434 | Msa0276280:CDS |
| GAAAGAGCTCTAGGGAGTTT+TGG | 0.301520 | 2_3:-8536858 | None:intergenic |
| AGGCGCGCCTGAGCCGCTTA+TGG | 0.347709 | 2_3:-8537189 | None:intergenic |
| AATAAGACATTGGCTATTGC+AGG | 0.385365 | 2_3:+8537680 | Msa0276280:CDS |
| GAAGAAGGAGAATTGTAATT+GGG | 0.386736 | 2_3:-8536987 | None:intergenic |
| TGTTGATGGAGTTTAATAGA+AGG | 0.398533 | 2_3:-8537127 | None:intergenic |
| CCCTACAGAGGAATATATAA+AGG | 0.403497 | 2_3:+8537379 | Msa0276280:CDS |
| GCCAATGCTCCAGCCATAAC+AGG | 0.404355 | 2_3:-8537773 | None:intergenic |
| GGCATCTATAGTACCTGTTA+TGG | 0.409865 | 2_3:+8537760 | Msa0276280:CDS |
| ATTGAAACCACAATAGCAAT+AGG | 0.416728 | 2_3:+8537353 | Msa0276280:CDS |
| TGGTGGATTCTTTCAAATGA+TGG | 0.426249 | 2_3:+8537862 | Msa0276280:CDS |
| GTGTTTGGTGATTTAGAAGA+AGG | 0.429199 | 2_3:-8537002 | None:intergenic |
| ATTTGTTGGTCAAGGTTCAA+TGG | 0.434031 | 2_3:+8537739 | Msa0276280:CDS |
| CATTTCAATTCTGTCGGATA+CGG | 0.435376 | 2_3:-8537066 | None:intergenic |
| CTCACTGGAATTGCAGCTGT+GGG | 0.436867 | 2_3:+8537710 | Msa0276280:CDS |
| TCACAATTAAGAGATCTTGC+TGG | 0.445724 | 2_3:+8537986 | Msa0276280:CDS |
| GGGTCCACATTTGTTGGTCA+AGG | 0.448877 | 2_3:+8537731 | Msa0276280:CDS |
| ATGGAAGATTATGAGAGATT+AGG | 0.449631 | 2_3:+8537638 | Msa0276280:CDS |
| TCAGCTTATTCTCGTGTTGA+GGG | 0.449906 | 2_3:+8538013 | Msa0276280:CDS |
| TTTGAGCATGGTGGACAAGT+TGG | 0.453342 | 2_3:+8537812 | Msa0276280:CDS |
| CCTTTATATATTCCTCTGTA+GGG | 0.456615 | 2_3:-8537379 | None:intergenic |
| ACCTGTTATGGCTGGAGCAT+TGG | 0.457217 | 2_3:+8537772 | Msa0276280:CDS |
| GGAGCTATGGAAAGAGCTCT+AGG | 0.476666 | 2_3:-8536867 | None:intergenic |
| ATTGCATCCATAAGCGGCTC+AGG | 0.484093 | 2_3:+8537182 | Msa0276280:CDS |
| ATCAGCTTATTCTCGTGTTG+AGG | 0.485175 | 2_3:+8538012 | Msa0276280:CDS |
| CACTCTTACCGCCTCCGCCA+TGG | 0.487010 | 2_3:+8537154 | Msa0276280:CDS |
| TGCTCCTCAGCGAGTTGTGA+AGG | 0.487809 | 2_3:-8537290 | None:intergenic |
| TTATGAGAGATTAGGAAACT+TGG | 0.490965 | 2_3:+8537646 | Msa0276280:CDS |
| CCTCAGCGAGTTGTGAAGGT+TGG | 0.492022 | 2_3:-8537286 | None:intergenic |
| TCCTTTATATATTCCTCTGT+AGG | 0.496248 | 2_3:-8537380 | None:intergenic |
| TGCAATACCTGCCATGGCGG+AGG | 0.503733 | 2_3:-8537165 | None:intergenic |
| GTTGATGGAGTTTAATAGAA+GGG | 0.505995 | 2_3:-8537126 | None:intergenic |
| AAGCTGTTTGAAGAATTAAA+CGG | 0.506648 | 2_3:+8536909 | Msa0276280:CDS |
| AAGTGAAGTAAAAGATGTGT+TGG | 0.509854 | 2_3:+8537595 | Msa0276280:CDS |
| GCTGTGGGGTCCACATTTGT+TGG | 0.513925 | 2_3:+8537725 | Msa0276280:CDS |
| AGGGTTTCCTATTGCTATTG+TGG | 0.518084 | 2_3:-8537360 | None:intergenic |
| AATACCTGCCATGGCGGAGG+CGG | 0.522673 | 2_3:-8537162 | None:intergenic |
| TTGATGCATTTCAATTCTGT+CGG | 0.527383 | 2_3:-8537072 | None:intergenic |
| AAGCATAGATGAAACCTGTA+AGG | 0.529627 | 2_3:-8536787 | None:intergenic |
| AAGTGCTGAAGATAATTTGA+GGG | 0.529865 | 2_3:-8537219 | None:intergenic |
| GGTAAGAGTGATCATGTTGA+TGG | 0.534091 | 2_3:-8537141 | None:intergenic |
| TCTTCAAACAGCTTCCTGCT+TGG | 0.534370 | 2_3:-8536900 | None:intergenic |
| ATTGAAATGCATCAAAACAT+TGG | 0.538909 | 2_3:+8537080 | Msa0276280:CDS |
| TCTATAGTACCTGTTATGGC+TGG | 0.540329 | 2_3:+8537764 | Msa0276280:CDS |
| AATATGAACCTGCAAATTGG+AGG | 0.543918 | 2_3:+8537483 | Msa0276280:CDS |
| ATTGCAGGACCTTTACTCAC+TGG | 0.545526 | 2_3:+8537695 | Msa0276280:CDS |
| GATAATTTGAGGGCTAAAAG+AGG | 0.549291 | 2_3:-8537209 | None:intergenic |
| CTTACCGCCTCCGCCATGGC+AGG | 0.551608 | 2_3:+8537158 | Msa0276280:CDS |
| AAAGTGCTGAAGATAATTTG+AGG | 0.552363 | 2_3:-8537220 | None:intergenic |
| AATTGCATAGAGTTGAGTAA+TGG | 0.553808 | 2_3:-8537036 | None:intergenic |
| ATAACTCCTAACAAAGGAAG+TGG | 0.554533 | 2_3:-8537440 | None:intergenic |
| ACTCACTGGAATTGCAGCTG+TGG | 0.560691 | 2_3:+8537709 | Msa0276280:CDS |
| GTTGAAGATTAATAAGACAT+TGG | 0.562474 | 2_3:+8537670 | Msa0276280:CDS |
| GCTGCAATTCCAGTGAGTAA+AGG | 0.564619 | 2_3:-8537704 | None:intergenic |
| TCTGAGATGTATAGAGCTTG+TGG | 0.569383 | 2_3:+8537842 | Msa0276280:CDS |
| AGTTATGAAGAGAAAAGACA+TGG | 0.591424 | 2_3:+8537619 | Msa0276280:CDS |
| TGAACCTTGACCAACAAATG+TGG | 0.592998 | 2_3:-8537735 | None:intergenic |
| GAGCTATGGAAAGAGCTCTA+GGG | 0.593426 | 2_3:-8536866 | None:intergenic |
| TATGGATGCAATACCTGCCA+TGG | 0.593572 | 2_3:-8537171 | None:intergenic |
| GCATGGTGGACAAGTTGGAA+TGG | 0.617901 | 2_3:+8537817 | Msa0276280:CDS |
| GCAGGTATTGCATCCATAAG+CGG | 0.639289 | 2_3:+8537176 | Msa0276280:CDS |
| TCAAGCATAACTCCTAACAA+AGG | 0.645499 | 2_3:-8537446 | None:intergenic |
| CCAACCTTCACAACTCGCTG+AGG | 0.661530 | 2_3:+8537286 | Msa0276280:CDS |
| TCACTGGAATTGCAGCTGTG+GGG | 0.665725 | 2_3:+8537711 | Msa0276280:CDS |
| GAGATGTATAGAGCTTGTGG+TGG | 0.675980 | 2_3:+8537845 | Msa0276280:CDS |
| GGATGCAATACCTGCCATGG+CGG | 0.702778 | 2_3:-8537168 | None:intergenic |
| AGCAATAGGAAACCCTACAG+AGG | 0.710226 | 2_3:+8537367 | Msa0276280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATGAAACAAAGAAAAA+TGG | + | chr2_3:8537554-8537573 | Msa0276280:CDS | 15.0% |
| !!! | AGATTTGTTTGAAATTAAAT+TGG | + | chr2_3:8537940-8537959 | Msa0276280:CDS | 15.0% |
| !! | AATAATGAAACAAAGAAAAA+TGG | + | chr2_3:8537554-8537573 | Msa0276280:CDS | 15.0% |
| !!! | AGATTTGTTTGAAATTAAAT+TGG | + | chr2_3:8537940-8537959 | Msa0276280:CDS | 15.0% |
| !!! | CATTTTCTTGAATCATTATT+GGG | - | chr2_3:8536953-8536972 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTGAATCATTAT+TGG | - | chr2_3:8536954-8536973 | None:intergenic | 20.0% |
| !!! | ATTAAATTGGCTTTGAAATT+AGG | + | chr2_3:8537953-8537972 | Msa0276280:CDS | 20.0% |
| !!! | CATTTTCTTGAATCATTATT+GGG | - | chr2_3:8536953-8536972 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTGAATCATTAT+TGG | - | chr2_3:8536954-8536973 | None:intergenic | 20.0% |
| !!! | ATTAAATTGGCTTTGAAATT+AGG | + | chr2_3:8537953-8537972 | Msa0276280:CDS | 20.0% |
| ! | AAGCTGTTTGAAGAATTAAA+CGG | + | chr2_3:8536909-8536928 | Msa0276280:CDS | 25.0% |
| !!! | ATGGTTTTTGTTTTTGTGTT+TGG | - | chr2_3:8537020-8537039 | None:intergenic | 25.0% |
| ! | ATTGAAATGCATCAAAACAT+TGG | + | chr2_3:8537080-8537099 | Msa0276280:CDS | 25.0% |
| ! | AAAAATATGAACCTGCAAAT+TGG | + | chr2_3:8537480-8537499 | Msa0276280:CDS | 25.0% |
| ! | ATGAAACAAAGAAAAATGGA+TGG | + | chr2_3:8537558-8537577 | Msa0276280:CDS | 25.0% |
| ! | GTTGAAGATTAATAAGACAT+TGG | + | chr2_3:8537670-8537689 | Msa0276280:CDS | 25.0% |
| ! | AAGCTGTTTGAAGAATTAAA+CGG | + | chr2_3:8536909-8536928 | Msa0276280:CDS | 25.0% |
| !!! | ATGGTTTTTGTTTTTGTGTT+TGG | - | chr2_3:8537020-8537039 | None:intergenic | 25.0% |
| ! | ATTGAAATGCATCAAAACAT+TGG | + | chr2_3:8537080-8537099 | Msa0276280:CDS | 25.0% |
| ! | AAAAATATGAACCTGCAAAT+TGG | + | chr2_3:8537480-8537499 | Msa0276280:CDS | 25.0% |
| ! | ATGAAACAAAGAAAAATGGA+TGG | + | chr2_3:8537558-8537577 | Msa0276280:CDS | 25.0% |
| ! | GTTGAAGATTAATAAGACAT+TGG | + | chr2_3:8537670-8537689 | Msa0276280:CDS | 25.0% |
| GAAGAAGGAGAATTGTAATT+GGG | - | chr2_3:8536990-8537009 | None:intergenic | 30.0% | |
| AGAAGAAGGAGAATTGTAAT+TGG | - | chr2_3:8536991-8537010 | None:intergenic | 30.0% | |
| AATTGCATAGAGTTGAGTAA+TGG | - | chr2_3:8537039-8537058 | None:intergenic | 30.0% | |
| TTGATGCATTTCAATTCTGT+CGG | - | chr2_3:8537075-8537094 | None:intergenic | 30.0% | |
| ! | GTTGATGGAGTTTAATAGAA+GGG | - | chr2_3:8537129-8537148 | None:intergenic | 30.0% |
| ! | TGTTGATGGAGTTTAATAGA+AGG | - | chr2_3:8537130-8537149 | None:intergenic | 30.0% |
| !! | AAGTGCTGAAGATAATTTGA+GGG | - | chr2_3:8537222-8537241 | None:intergenic | 30.0% |
| !! | AAAGTGCTGAAGATAATTTG+AGG | - | chr2_3:8537223-8537242 | None:intergenic | 30.0% |
| ATTGAAACCACAATAGCAAT+AGG | + | chr2_3:8537353-8537372 | Msa0276280:CDS | 30.0% | |
| CCTTTATATATTCCTCTGTA+GGG | - | chr2_3:8537382-8537401 | None:intergenic | 30.0% | |
| TCCTTTATATATTCCTCTGT+AGG | - | chr2_3:8537383-8537402 | None:intergenic | 30.0% | |
| !! | TTGCAGGTTCATATTTTTGA+GGG | - | chr2_3:8537478-8537497 | None:intergenic | 30.0% |
| !! | TTTGCAGGTTCATATTTTTG+AGG | - | chr2_3:8537479-8537498 | None:intergenic | 30.0% |
| CTTCTAGATGATTTCTTTGT+AGG | - | chr2_3:8537509-8537528 | None:intergenic | 30.0% | |
| AAGAAAAATGGATGGAATGA+AGG | + | chr2_3:8537566-8537585 | Msa0276280:CDS | 30.0% | |
| AGAAAAATGGATGGAATGAA+GGG | + | chr2_3:8537567-8537586 | Msa0276280:CDS | 30.0% | |
| AAGTGAAGTAAAAGATGTGT+TGG | + | chr2_3:8537595-8537614 | Msa0276280:CDS | 30.0% | |
| AGTTATGAAGAGAAAAGACA+TGG | + | chr2_3:8537619-8537638 | Msa0276280:CDS | 30.0% | |
| ATGGAAGATTATGAGAGATT+AGG | + | chr2_3:8537638-8537657 | Msa0276280:CDS | 30.0% | |
| TTATGAGAGATTAGGAAACT+TGG | + | chr2_3:8537646-8537665 | Msa0276280:CDS | 30.0% | |
| GATGAAGAACAAAGAGAAAA+TGG | + | chr2_3:8537917-8537936 | Msa0276280:CDS | 30.0% | |
| GAAGAAGGAGAATTGTAATT+GGG | - | chr2_3:8536990-8537009 | None:intergenic | 30.0% | |
| AGAAGAAGGAGAATTGTAAT+TGG | - | chr2_3:8536991-8537010 | None:intergenic | 30.0% | |
| AATTGCATAGAGTTGAGTAA+TGG | - | chr2_3:8537039-8537058 | None:intergenic | 30.0% | |
| TTGATGCATTTCAATTCTGT+CGG | - | chr2_3:8537075-8537094 | None:intergenic | 30.0% | |
| ! | GTTGATGGAGTTTAATAGAA+GGG | - | chr2_3:8537129-8537148 | None:intergenic | 30.0% |
| ! | TGTTGATGGAGTTTAATAGA+AGG | - | chr2_3:8537130-8537149 | None:intergenic | 30.0% |
| !! | AAGTGCTGAAGATAATTTGA+GGG | - | chr2_3:8537222-8537241 | None:intergenic | 30.0% |
| !! | AAAGTGCTGAAGATAATTTG+AGG | - | chr2_3:8537223-8537242 | None:intergenic | 30.0% |
| ATTGAAACCACAATAGCAAT+AGG | + | chr2_3:8537353-8537372 | Msa0276280:CDS | 30.0% | |
| CCTTTATATATTCCTCTGTA+GGG | - | chr2_3:8537382-8537401 | None:intergenic | 30.0% | |
| TCCTTTATATATTCCTCTGT+AGG | - | chr2_3:8537383-8537402 | None:intergenic | 30.0% | |
| !! | TTGCAGGTTCATATTTTTGA+GGG | - | chr2_3:8537478-8537497 | None:intergenic | 30.0% |
| !! | TTTGCAGGTTCATATTTTTG+AGG | - | chr2_3:8537479-8537498 | None:intergenic | 30.0% |
| CTTCTAGATGATTTCTTTGT+AGG | - | chr2_3:8537509-8537528 | None:intergenic | 30.0% | |
| AAGAAAAATGGATGGAATGA+AGG | + | chr2_3:8537566-8537585 | Msa0276280:CDS | 30.0% | |
| AGAAAAATGGATGGAATGAA+GGG | + | chr2_3:8537567-8537586 | Msa0276280:CDS | 30.0% | |
| AAGTGAAGTAAAAGATGTGT+TGG | + | chr2_3:8537595-8537614 | Msa0276280:CDS | 30.0% | |
| AGTTATGAAGAGAAAAGACA+TGG | + | chr2_3:8537619-8537638 | Msa0276280:CDS | 30.0% | |
| ATGGAAGATTATGAGAGATT+AGG | + | chr2_3:8537638-8537657 | Msa0276280:CDS | 30.0% | |
| TTATGAGAGATTAGGAAACT+TGG | + | chr2_3:8537646-8537665 | Msa0276280:CDS | 30.0% | |
| GATGAAGAACAAAGAGAAAA+TGG | + | chr2_3:8537917-8537936 | Msa0276280:CDS | 30.0% | |
| AAGCATAGATGAAACCTGTA+AGG | - | chr2_3:8536790-8536809 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGGAACATTGAAAG+AGG | - | chr2_3:8536847-8536866 | None:intergenic | 35.0% |
| ! | GTGTTTGGTGATTTAGAAGA+AGG | - | chr2_3:8537005-8537024 | None:intergenic | 35.0% |
| CATTTCAATTCTGTCGGATA+CGG | - | chr2_3:8537069-8537088 | None:intergenic | 35.0% | |
| GATAATTTGAGGGCTAAAAG+AGG | - | chr2_3:8537212-8537231 | None:intergenic | 35.0% | |
| ! | CTTTTATTCTCAGCTTCTAC+TGG | + | chr2_3:8537239-8537258 | Msa0276280:CDS | 35.0% |
| CCCTACAGAGGAATATATAA+AGG | + | chr2_3:8537379-8537398 | Msa0276280:CDS | 35.0% | |
| ATAACTCCTAACAAAGGAAG+TGG | - | chr2_3:8537443-8537462 | None:intergenic | 35.0% | |
| TCAAGCATAACTCCTAACAA+AGG | - | chr2_3:8537449-8537468 | None:intergenic | 35.0% | |
| AATATGAACCTGCAAATTGG+AGG | + | chr2_3:8537483-8537502 | Msa0276280:CDS | 35.0% | |
| ! | AATAAGACATTGGCTATTGC+AGG | + | chr2_3:8537680-8537699 | Msa0276280:CDS | 35.0% |
| ! | ATTTGTTGGTCAAGGTTCAA+TGG | + | chr2_3:8537739-8537758 | Msa0276280:CDS | 35.0% |
| ! | GCTGTTAATTCTTTTGAGCA+TGG | + | chr2_3:8537800-8537819 | Msa0276280:CDS | 35.0% |
| ! | GTTAATTCTTTTGAGCATGG+TGG | + | chr2_3:8537803-8537822 | Msa0276280:CDS | 35.0% |
| !! | TGGTGGATTCTTTCAAATGA+TGG | + | chr2_3:8537862-8537881 | Msa0276280:CDS | 35.0% |
| TCACAATTAAGAGATCTTGC+TGG | + | chr2_3:8537986-8538005 | Msa0276280:CDS | 35.0% | |
| AAGCATAGATGAAACCTGTA+AGG | - | chr2_3:8536790-8536809 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGGAACATTGAAAG+AGG | - | chr2_3:8536847-8536866 | None:intergenic | 35.0% |
| ! | GTGTTTGGTGATTTAGAAGA+AGG | - | chr2_3:8537005-8537024 | None:intergenic | 35.0% |
| CATTTCAATTCTGTCGGATA+CGG | - | chr2_3:8537069-8537088 | None:intergenic | 35.0% | |
| GATAATTTGAGGGCTAAAAG+AGG | - | chr2_3:8537212-8537231 | None:intergenic | 35.0% | |
| ! | CTTTTATTCTCAGCTTCTAC+TGG | + | chr2_3:8537239-8537258 | Msa0276280:CDS | 35.0% |
| CCCTACAGAGGAATATATAA+AGG | + | chr2_3:8537379-8537398 | Msa0276280:CDS | 35.0% | |
| ATAACTCCTAACAAAGGAAG+TGG | - | chr2_3:8537443-8537462 | None:intergenic | 35.0% | |
| TCAAGCATAACTCCTAACAA+AGG | - | chr2_3:8537449-8537468 | None:intergenic | 35.0% | |
| AATATGAACCTGCAAATTGG+AGG | + | chr2_3:8537483-8537502 | Msa0276280:CDS | 35.0% | |
| ! | AATAAGACATTGGCTATTGC+AGG | + | chr2_3:8537680-8537699 | Msa0276280:CDS | 35.0% |
| ! | ATTTGTTGGTCAAGGTTCAA+TGG | + | chr2_3:8537739-8537758 | Msa0276280:CDS | 35.0% |
| ! | GCTGTTAATTCTTTTGAGCA+TGG | + | chr2_3:8537800-8537819 | Msa0276280:CDS | 35.0% |
| ! | GTTAATTCTTTTGAGCATGG+TGG | + | chr2_3:8537803-8537822 | Msa0276280:CDS | 35.0% |
| !! | TGGTGGATTCTTTCAAATGA+TGG | + | chr2_3:8537862-8537881 | Msa0276280:CDS | 35.0% |
| TCACAATTAAGAGATCTTGC+TGG | + | chr2_3:8537986-8538005 | Msa0276280:CDS | 35.0% | |
| !!! | TGGTCTTGTTTTTGGAGCTA+TGG | - | chr2_3:8536883-8536902 | None:intergenic | 40.0% |
| !!! | TTCCTGCTTGGTCTTGTTTT+TGG | - | chr2_3:8536891-8536910 | None:intergenic | 40.0% |
| GGTAAGAGTGATCATGTTGA+TGG | - | chr2_3:8537144-8537163 | None:intergenic | 40.0% | |
| ! | AGGGTTTCCTATTGCTATTG+TGG | - | chr2_3:8537363-8537382 | None:intergenic | 40.0% |
| GCATATCCACTTCCTTTGTT+AGG | + | chr2_3:8537434-8537453 | Msa0276280:CDS | 40.0% | |
| TGAACCTTGACCAACAAATG+TGG | - | chr2_3:8537738-8537757 | None:intergenic | 40.0% | |
| GGCATCTATAGTACCTGTTA+TGG | + | chr2_3:8537760-8537779 | Msa0276280:CDS | 40.0% | |
| TCTATAGTACCTGTTATGGC+TGG | + | chr2_3:8537764-8537783 | Msa0276280:CDS | 40.0% | |
| ! | TCTGAGATGTATAGAGCTTG+TGG | + | chr2_3:8537842-8537861 | Msa0276280:CDS | 40.0% |
| ATCAGCTTATTCTCGTGTTG+AGG | + | chr2_3:8538012-8538031 | Msa0276280:CDS | 40.0% | |
| TCAGCTTATTCTCGTGTTGA+GGG | + | chr2_3:8538013-8538032 | Msa0276280:CDS | 40.0% | |
| !!! | TGGTCTTGTTTTTGGAGCTA+TGG | - | chr2_3:8536883-8536902 | None:intergenic | 40.0% |
| !!! | TTCCTGCTTGGTCTTGTTTT+TGG | - | chr2_3:8536891-8536910 | None:intergenic | 40.0% |
| GGTAAGAGTGATCATGTTGA+TGG | - | chr2_3:8537144-8537163 | None:intergenic | 40.0% | |
| ! | AGGGTTTCCTATTGCTATTG+TGG | - | chr2_3:8537363-8537382 | None:intergenic | 40.0% |
| GCATATCCACTTCCTTTGTT+AGG | + | chr2_3:8537434-8537453 | Msa0276280:CDS | 40.0% | |
| TGAACCTTGACCAACAAATG+TGG | - | chr2_3:8537738-8537757 | None:intergenic | 40.0% | |
| GGCATCTATAGTACCTGTTA+TGG | + | chr2_3:8537760-8537779 | Msa0276280:CDS | 40.0% | |
| TCTATAGTACCTGTTATGGC+TGG | + | chr2_3:8537764-8537783 | Msa0276280:CDS | 40.0% | |
| ! | TCTGAGATGTATAGAGCTTG+TGG | + | chr2_3:8537842-8537861 | Msa0276280:CDS | 40.0% |
| ATCAGCTTATTCTCGTGTTG+AGG | + | chr2_3:8538012-8538031 | Msa0276280:CDS | 40.0% | |
| TCAGCTTATTCTCGTGTTGA+GGG | + | chr2_3:8538013-8538032 | Msa0276280:CDS | 40.0% | |
| !!! | GAAAGAGCTCTAGGGAGTTT+TGG | - | chr2_3:8536861-8536880 | None:intergenic | 45.0% |
| GAGCTATGGAAAGAGCTCTA+GGG | - | chr2_3:8536869-8536888 | None:intergenic | 45.0% | |
| CTCCAAAAACAAGACCAAGC+AGG | + | chr2_3:8536886-8536905 | Msa0276280:CDS | 45.0% | |
| TCTTCAAACAGCTTCCTGCT+TGG | - | chr2_3:8536903-8536922 | None:intergenic | 45.0% | |
| TTGGCGAACAACGCGATAAT+TGG | + | chr2_3:8537099-8537118 | Msa0276280:CDS | 45.0% | |
| TATGGATGCAATACCTGCCA+TGG | - | chr2_3:8537174-8537193 | None:intergenic | 45.0% | |
| ! | GCAGGTATTGCATCCATAAG+CGG | + | chr2_3:8537176-8537195 | Msa0276280:CDS | 45.0% |
| AGCAATAGGAAACCCTACAG+AGG | + | chr2_3:8537367-8537386 | Msa0276280:CDS | 45.0% | |
| TTTGTAGGCCTCCAATTTGC+AGG | - | chr2_3:8537494-8537513 | None:intergenic | 45.0% | |
| ATTGCAGGACCTTTACTCAC+TGG | + | chr2_3:8537695-8537714 | Msa0276280:CDS | 45.0% | |
| GCTGCAATTCCAGTGAGTAA+AGG | - | chr2_3:8537707-8537726 | None:intergenic | 45.0% | |
| !! | TTTGAGCATGGTGGACAAGT+TGG | + | chr2_3:8537812-8537831 | Msa0276280:CDS | 45.0% |
| GAGATGTATAGAGCTTGTGG+TGG | + | chr2_3:8537845-8537864 | Msa0276280:CDS | 45.0% | |
| !!! | GAAAGAGCTCTAGGGAGTTT+TGG | - | chr2_3:8536861-8536880 | None:intergenic | 45.0% |
| GAGCTATGGAAAGAGCTCTA+GGG | - | chr2_3:8536869-8536888 | None:intergenic | 45.0% | |
| CTCCAAAAACAAGACCAAGC+AGG | + | chr2_3:8536886-8536905 | Msa0276280:CDS | 45.0% | |
| TCTTCAAACAGCTTCCTGCT+TGG | - | chr2_3:8536903-8536922 | None:intergenic | 45.0% | |
| TTGGCGAACAACGCGATAAT+TGG | + | chr2_3:8537099-8537118 | Msa0276280:CDS | 45.0% | |
| TATGGATGCAATACCTGCCA+TGG | - | chr2_3:8537174-8537193 | None:intergenic | 45.0% | |
| ! | GCAGGTATTGCATCCATAAG+CGG | + | chr2_3:8537176-8537195 | Msa0276280:CDS | 45.0% |
| AGCAATAGGAAACCCTACAG+AGG | + | chr2_3:8537367-8537386 | Msa0276280:CDS | 45.0% | |
| TTTGTAGGCCTCCAATTTGC+AGG | - | chr2_3:8537494-8537513 | None:intergenic | 45.0% | |
| ATTGCAGGACCTTTACTCAC+TGG | + | chr2_3:8537695-8537714 | Msa0276280:CDS | 45.0% | |
| GCTGCAATTCCAGTGAGTAA+AGG | - | chr2_3:8537707-8537726 | None:intergenic | 45.0% | |
| !! | TTTGAGCATGGTGGACAAGT+TGG | + | chr2_3:8537812-8537831 | Msa0276280:CDS | 45.0% |
| GAGATGTATAGAGCTTGTGG+TGG | + | chr2_3:8537845-8537864 | Msa0276280:CDS | 45.0% | |
| GGAGCTATGGAAAGAGCTCT+AGG | - | chr2_3:8536870-8536889 | None:intergenic | 50.0% | |
| ATTGCATCCATAAGCGGCTC+AGG | + | chr2_3:8537182-8537201 | Msa0276280:CDS | 50.0% | |
| ACTCACTGGAATTGCAGCTG+TGG | + | chr2_3:8537709-8537728 | Msa0276280:CDS | 50.0% | |
| CTCACTGGAATTGCAGCTGT+GGG | + | chr2_3:8537710-8537729 | Msa0276280:CDS | 50.0% | |
| TCACTGGAATTGCAGCTGTG+GGG | + | chr2_3:8537711-8537730 | Msa0276280:CDS | 50.0% | |
| ! | GGGTCCACATTTGTTGGTCA+AGG | + | chr2_3:8537731-8537750 | Msa0276280:CDS | 50.0% |
| ACCTGTTATGGCTGGAGCAT+TGG | + | chr2_3:8537772-8537791 | Msa0276280:CDS | 50.0% | |
| !! | GCATGGTGGACAAGTTGGAA+TGG | + | chr2_3:8537817-8537836 | Msa0276280:CDS | 50.0% |
| GGAGCTATGGAAAGAGCTCT+AGG | - | chr2_3:8536870-8536889 | None:intergenic | 50.0% | |
| ATTGCATCCATAAGCGGCTC+AGG | + | chr2_3:8537182-8537201 | Msa0276280:CDS | 50.0% | |
| ACTCACTGGAATTGCAGCTG+TGG | + | chr2_3:8537709-8537728 | Msa0276280:CDS | 50.0% | |
| CTCACTGGAATTGCAGCTGT+GGG | + | chr2_3:8537710-8537729 | Msa0276280:CDS | 50.0% | |
| TCACTGGAATTGCAGCTGTG+GGG | + | chr2_3:8537711-8537730 | Msa0276280:CDS | 50.0% | |
| ! | GGGTCCACATTTGTTGGTCA+AGG | + | chr2_3:8537731-8537750 | Msa0276280:CDS | 50.0% |
| ACCTGTTATGGCTGGAGCAT+TGG | + | chr2_3:8537772-8537791 | Msa0276280:CDS | 50.0% | |
| !! | GCATGGTGGACAAGTTGGAA+TGG | + | chr2_3:8537817-8537836 | Msa0276280:CDS | 50.0% |
| GGATGCAATACCTGCCATGG+CGG | - | chr2_3:8537171-8537190 | None:intergenic | 55.0% | |
| CCTCAGCGAGTTGTGAAGGT+TGG | - | chr2_3:8537289-8537308 | None:intergenic | 55.0% | |
| CCAACCTTCACAACTCGCTG+AGG | + | chr2_3:8537286-8537305 | Msa0276280:CDS | 55.0% | |
| TGCTCCTCAGCGAGTTGTGA+AGG | - | chr2_3:8537293-8537312 | None:intergenic | 55.0% | |
| GCTGTGGGGTCCACATTTGT+TGG | + | chr2_3:8537725-8537744 | Msa0276280:CDS | 55.0% | |
| GCCAATGCTCCAGCCATAAC+AGG | - | chr2_3:8537776-8537795 | None:intergenic | 55.0% | |
| GGATGCAATACCTGCCATGG+CGG | - | chr2_3:8537171-8537190 | None:intergenic | 55.0% | |
| CCTCAGCGAGTTGTGAAGGT+TGG | - | chr2_3:8537289-8537308 | None:intergenic | 55.0% | |
| CCAACCTTCACAACTCGCTG+AGG | + | chr2_3:8537286-8537305 | Msa0276280:CDS | 55.0% | |
| TGCTCCTCAGCGAGTTGTGA+AGG | - | chr2_3:8537293-8537312 | None:intergenic | 55.0% | |
| GCTGTGGGGTCCACATTTGT+TGG | + | chr2_3:8537725-8537744 | Msa0276280:CDS | 55.0% | |
| GCCAATGCTCCAGCCATAAC+AGG | - | chr2_3:8537776-8537795 | None:intergenic | 55.0% | |
| ! | AATACCTGCCATGGCGGAGG+CGG | - | chr2_3:8537165-8537184 | None:intergenic | 60.0% |
| TGCAATACCTGCCATGGCGG+AGG | - | chr2_3:8537168-8537187 | None:intergenic | 60.0% | |
| ! | AATACCTGCCATGGCGGAGG+CGG | - | chr2_3:8537165-8537184 | None:intergenic | 60.0% |
| TGCAATACCTGCCATGGCGG+AGG | - | chr2_3:8537168-8537187 | None:intergenic | 60.0% | |
| CACTCTTACCGCCTCCGCCA+TGG | + | chr2_3:8537154-8537173 | Msa0276280:CDS | 65.0% | |
| CACTCTTACCGCCTCCGCCA+TGG | + | chr2_3:8537154-8537173 | Msa0276280:CDS | 65.0% | |
| CTTACCGCCTCCGCCATGGC+AGG | + | chr2_3:8537158-8537177 | Msa0276280:CDS | 70.0% | |
| AGGCGCGCCTGAGCCGCTTA+TGG | - | chr2_3:8537192-8537211 | None:intergenic | 70.0% | |
| CTTACCGCCTCCGCCATGGC+AGG | + | chr2_3:8537158-8537177 | Msa0276280:CDS | 70.0% | |
| AGGCGCGCCTGAGCCGCTTA+TGG | - | chr2_3:8537192-8537211 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8536780 | 8538072 | 8536780 | ID=Msa0276280;Name=Msa0276280 |
| chr2_3 | mRNA | 8536780 | 8538072 | 8536780 | ID=Msa0276280-mRNA-1;Parent=Msa0276280;Name=Msa0276280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|430 |
| chr2_3 | exon | 8536780 | 8538072 | 8536780 | ID=Msa0276280-mRNA-1:exon:3812;Parent=Msa0276280-mRNA-1 |
| chr2_3 | CDS | 8536780 | 8538072 | 8536780 | ID=Msa0276280-mRNA-1:cds;Parent=Msa0276280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
