AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641340 MtrunA17_Chr4g0025971 95.572 271 12 0 1 271 1 271 0.0 527
Msa0641340 MtrunA17_Chr4g0026001 81.550 271 50 0 1 271 1 271 1.05e-166 462
Msa0641340 MtrunA17_Chr4g0025981 77.978 277 48 1 3 266 17 293 1.16e-154 434
Msa0641340 MtrunA17_Chr4g0044111 59.231 260 103 1 12 268 11 270 7.98e-105 305
Msa0641340 MtrunA17_Chr7g0266981 59.231 260 103 1 12 268 11 270 1.42e-104 305
Msa0641340 MtrunA17_Chr7g0266891 58.140 258 105 1 14 268 7 264 1.90e-99 291
Msa0641340 MtrunA17_Chr4g0044131 55.686 255 106 3 12 261 6 258 1.63e-90 269
Msa0641340 MtrunA17_Chr7g0244061 51.111 270 107 5 12 258 27 294 1.05e-87 263
Msa0641340 MtrunA17_Chr7g0268591 49.804 255 119 3 12 258 31 284 3.98e-77 236
Msa0641340 MtrunA17_Chr7g0270441 49.213 254 125 2 12 261 4 257 7.80e-77 234
Msa0641340 MtrunA17_Chr2g0324021 49.804 255 121 4 12 261 4 256 1.82e-76 233
Msa0641340 MtrunA17_Chr7g0252031 48.519 270 124 5 12 269 33 299 5.67e-76 233
Msa0641340 MtrunA17_Chr7g0267011 60.326 184 73 0 12 195 6 189 1.01e-75 229
Msa0641340 MtrunA17_Chr7g0267001 49.804 255 103 4 12 261 6 240 2.79e-75 229
Msa0641340 MtrunA17_Chr3g0084871 48.708 271 129 3 8 268 10 280 1.78e-74 228
Msa0641340 MtrunA17_Chr7g0266991 52.137 234 92 2 8 238 19 235 3.79e-74 226
Msa0641340 MtrunA17_Chr6g0459261 45.211 261 137 4 1 256 13 272 6.30e-74 227
Msa0641340 MtrunA17_Chr7g0270451 48.413 252 125 3 12 259 4 254 9.88e-74 226
Msa0641340 MtrunA17_Chr4g0040371 46.038 265 125 4 10 261 15 274 5.44e-71 220
Msa0641340 MtrunA17_Chr6g0459331 46.743 261 133 4 1 256 1 260 3.03e-69 214
Msa0641340 MtrunA17_Chr6g0459281 46.371 248 128 3 13 255 12 259 1.80e-68 213
Msa0641340 MtrunA17_Chr6g0459301 43.775 249 135 3 13 256 13 261 8.02e-68 211
Msa0641340 MtrunA17_Chr6g0459351 45.703 256 128 5 8 255 7 259 5.79e-67 209
Msa0641340 MtrunA17_Chr6g0459271 44.444 261 139 4 1 256 1 260 1.84e-65 205
Msa0641340 MtrunA17_Chr4g0044121 55.932 177 75 1 95 268 1 177 6.54e-62 193
Msa0641340 MtrunA17_Chr6g0463951 47.093 172 86 3 95 262 1 171 3.46e-41 140
Msa0641340 MtrunA17_Chr7g0270471 48.649 148 72 2 121 264 1 148 2.50e-39 134
Msa0641340 MtrunA17_Chr3g0122901 32.157 255 163 6 8 257 69 318 9.12e-35 127
Msa0641340 MtrunA17_Chr4g0028921 31.136 273 176 7 4 267 1 270 8.00e-29 110
Msa0641340 MtrunA17_Chr1g0191751 32.950 261 161 6 9 259 96 352 9.36e-28 109
Msa0641340 MtrunA17_Chr3g0142651 43.182 132 70 1 95 221 1 132 1.86e-27 103
Msa0641340 MtrunA17_Chr7g0270461 52.041 98 47 0 12 109 44 141 2.63e-27 103
Msa0641340 MtrunA17_Chr4g0028911 30.370 270 162 8 14 267 11 270 3.22e-26 103
Msa0641340 MtrunA17_Chr7g0272961 29.545 264 166 8 9 259 35 291 2.13e-25 102
Msa0641340 MtrunA17_Chr4g0074511 31.801 261 157 10 13 259 39 292 2.01e-23 96.7
Msa0641340 MtrunA17_Chr4g0045041 34.426 244 134 9 16 244 6 238 2.68e-22 96.3
Msa0641340 MtrunA17_Chr1g0171831 29.412 255 157 9 11 247 11 260 5.09e-22 92.4
Msa0641340 MtrunA17_Chr0c30g0494101 31.679 262 154 11 13 259 39 290 1.64e-21 91.3
Msa0641340 MtrunA17_Chr3g0112261 29.200 250 170 6 14 259 19 265 4.42e-21 90.1
Msa0641340 MtrunA17_Chr4g0045061 31.818 242 143 6 16 244 6 238 2.22e-20 90.5
Msa0641340 MtrunA17_Chr8g0357481 30.037 273 163 8 14 268 14 276 2.29e-20 88.6
Msa0641340 MtrunA17_Chr7g0259521 28.309 272 160 10 1 256 1 253 6.76e-20 86.7
Msa0641340 MtrunA17_Chr4g0075531 26.587 252 171 6 12 257 5 248 2.08e-19 85.1
Msa0641340 MtrunA17_Chr3g0112151 28.458 253 168 7 14 259 86 332 4.16e-19 85.5
Msa0641340 MtrunA17_Chr3g0112271 27.799 259 170 7 14 264 17 266 1.71e-18 82.8
Msa0641340 MtrunA17_Chr4g0054341 29.670 182 124 3 15 195 3 181 2.63e-18 82.4
Msa0641340 MtrunA17_Chr7g0239511 29.412 255 167 7 14 259 16 266 2.80e-18 82.0
Msa0641340 MtrunA17_Chr3g0112171 28.462 260 167 8 14 264 15 264 4.07e-18 81.6
Msa0641340 MtrunA17_Chr7g0239481 30.556 252 162 7 14 256 15 262 7.61e-17 78.2
Msa0641340 MtrunA17_Chr3g0112141 26.667 255 178 8 14 264 17 266 1.29e-16 77.8
Msa0641340 MtrunA17_Chr4g0032141 28.287 251 171 8 14 259 56 302 4.64e-16 76.6
Msa0641340 MtrunA17_Chr7g0239491 26.877 253 173 7 14 258 15 263 1.25e-15 74.7
Msa0641340 MtrunA17_Chr4g0032181 27.692 195 130 5 70 259 59 247 2.21e-15 73.9
Msa0641340 MtrunA17_Chr7g0259531 26.587 252 172 5 14 256 11 258 2.97e-15 73.6
Msa0641340 MtrunA17_Chr8g0386171 26.070 257 149 9 14 235 52 302 8.26e-15 73.6
Msa0641340 MtrunA17_Chr3g0124471 30.000 180 118 4 18 195 30 203 2.28e-14 71.6
Msa0641340 MtrunA17_Chr7g0239451 26.877 253 174 5 14 258 16 265 8.25e-14 69.7
Msa0641340 MtrunA17_Chr7g0239501 27.843 255 171 7 14 259 16 266 8.25e-14 69.7
Msa0641340 MtrunA17_Chr8g0386201 25.238 210 151 4 16 222 47 253 1.27e-13 70.1
Msa0641340 MtrunA17_Chr3g0124481 29.518 166 110 3 31 195 29 188 1.29e-13 69.3
Msa0641340 MtrunA17_Chr8g0355281 28.824 170 115 2 20 183 75 244 1.02e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641340 AT3G51680.1 52.190 274 110 6 12 266 30 301 9.40e-88 263
Msa0641340 AT2G47140.1 50.000 252 121 3 12 259 4 254 2.99e-78 238
Msa0641340 AT1G52340.1 49.446 271 122 3 12 268 16 285 1.22e-77 237
Msa0641340 AT3G26770.1 48.450 258 119 4 12 258 39 293 3.70e-75 231
Msa0641340 AT4G03140.1 51.373 255 115 3 12 258 76 329 5.74e-74 229
Msa0641340 AT3G26760.1 44.697 264 134 3 6 258 28 290 1.08e-72 225
Msa0641340 AT3G29250.2 47.036 253 125 4 13 259 5 254 1.45e-72 223
Msa0641340 AT3G29250.3 47.036 253 125 4 13 259 41 290 4.42e-72 223
Msa0641340 AT3G29250.1 46.875 256 126 5 11 259 40 292 3.41e-71 221
Msa0641340 AT2G47130.1 47.619 252 124 4 13 259 5 253 7.29e-71 219
Msa0641340 AT2G47120.2 47.244 254 125 5 11 259 4 253 3.22e-70 217
Msa0641340 AT2G47120.1 47.222 252 124 5 13 259 5 252 1.23e-69 216
Msa0641340 AT3G29260.1 46.429 252 129 4 12 259 4 253 2.61e-67 210
Msa0641340 AT3G42960.1 44.275 262 129 6 12 260 6 263 8.60e-56 181
Msa0641340 AT1G24360.1 30.385 260 159 7 11 259 71 319 8.23e-31 117
Msa0641340 AT3G55290.1 33.203 256 159 7 14 259 18 271 2.58e-30 115
Msa0641340 AT3G55290.2 33.203 256 159 7 14 259 17 270 2.61e-30 115
Msa0641340 AT1G63380.2 32.031 256 163 6 14 259 22 276 5.56e-29 111
Msa0641340 AT1G63380.4 32.031 256 163 6 14 259 19 273 5.81e-29 111
Msa0641340 AT1G63380.3 32.031 256 163 6 14 259 15 269 6.33e-29 111
Msa0641340 AT2G17845.1 31.203 266 168 7 14 267 47 309 6.92e-29 112
Msa0641340 AT1G63380.1 32.031 256 163 6 14 259 17 271 6.95e-29 111
Msa0641340 AT1G62610.3 30.859 256 166 6 14 259 15 269 3.06e-28 109
Msa0641340 AT1G62610.2 30.859 256 166 6 14 259 13 267 3.74e-28 109
Msa0641340 AT1G62610.1 30.859 256 166 6 14 259 14 268 3.82e-28 109
Msa0641340 AT1G62610.4 30.859 256 166 6 14 259 19 273 3.96e-28 109
Msa0641340 AT3G55310.1 32.031 256 162 7 14 259 17 270 1.78e-27 107
Msa0641340 AT3G46170.1 31.179 263 157 8 13 259 25 279 3.05e-27 107
Msa0641340 AT2G30670.1 30.315 254 170 4 14 264 7 256 2.77e-25 101
Msa0641340 AT1G54870.1 31.538 260 158 9 13 259 81 333 2.88e-24 100
Msa0641340 AT1G54870.2 31.538 260 158 9 13 259 83 335 2.91e-24 100
Msa0641340 AT2G47150.1 32.677 254 112 8 14 266 1 196 3.70e-24 96.7
Msa0641340 AT3G05260.1 29.119 261 170 6 9 259 32 287 6.81e-23 95.5
Msa0641340 AT2G29330.1 29.297 256 170 6 14 264 7 256 1.34e-22 94.0
Msa0641340 AT2G29310.1 30.400 250 167 5 14 259 7 253 4.52e-22 92.8
Msa0641340 AT2G29300.1 31.518 257 164 8 14 264 7 257 2.16e-21 90.9
Msa0641340 AT2G29340.2 28.346 254 175 4 14 264 7 256 2.66e-21 90.5
Msa0641340 AT1G07450.1 29.804 255 169 7 14 264 8 256 3.03e-21 90.5
Msa0641340 AT2G29340.1 28.346 254 175 4 14 264 7 256 3.96e-21 90.9
Msa0641340 AT4G05530.1 31.274 259 162 8 6 257 1 250 4.27e-21 90.1
Msa0641340 AT5G06060.1 27.843 255 175 6 14 264 9 258 7.81e-21 89.4
Msa0641340 AT1G49670.2 35.000 200 116 5 16 202 6 204 9.03e-21 92.0
Msa0641340 AT1G49670.1 35.000 200 116 5 16 202 6 204 1.02e-20 92.0
Msa0641340 AT2G29300.2 31.076 251 163 7 14 258 7 253 1.86e-20 89.0
Msa0641340 AT5G10050.1 31.148 183 118 4 15 195 6 182 6.24e-20 87.4
Msa0641340 AT1G07440.1 26.506 249 177 4 14 259 12 257 2.69e-19 85.1
Msa0641340 AT2G29260.1 27.376 263 182 6 2 259 56 314 4.05e-19 85.9
Msa0641340 AT5G18210.1 28.517 263 168 6 7 255 1 257 5.87e-19 84.3
Msa0641340 AT2G29290.2 26.772 254 179 4 14 264 7 256 6.03e-19 84.3
Msa0641340 AT2G29370.1 26.641 259 173 6 14 264 16 265 7.32e-19 84.0
Msa0641340 AT2G29350.1 27.165 254 179 4 14 264 15 265 1.88e-18 83.2
Msa0641340 AT5G65205.1 32.432 185 113 6 15 195 7 183 2.45e-18 82.8
Msa0641340 AT5G50590.2 30.811 185 113 5 9 185 40 217 3.04e-18 82.0
Msa0641340 AT5G50690.2 30.811 185 113 5 9 185 40 217 3.04e-18 82.0
Msa0641340 AT2G29150.1 28.889 270 164 8 9 264 11 266 5.60e-18 81.6
Msa0641340 AT2G29340.3 30.729 192 128 3 14 202 7 196 8.52e-18 79.7
Msa0641340 AT2G29340.4 30.729 192 128 3 14 202 7 196 8.52e-18 79.7
Msa0641340 AT5G50590.1 30.811 185 113 5 9 185 40 217 8.60e-18 81.6
Msa0641340 AT5G50690.1 30.811 185 113 5 9 185 40 217 8.60e-18 81.6
Msa0641340 AT3G47350.2 29.353 201 126 6 16 208 46 238 1.78e-17 81.3
Msa0641340 AT2G29320.1 28.958 259 174 7 7 259 6 260 1.97e-17 80.1
Msa0641340 AT3G47350.1 29.353 201 126 6 16 208 46 238 2.00e-17 80.9
Msa0641340 AT5G18210.2 27.737 274 173 7 7 266 1 263 2.01e-17 80.5
Msa0641340 AT2G29360.1 27.099 262 180 4 9 264 11 267 2.63e-17 79.7
Msa0641340 AT3G12800.1 29.502 261 167 7 14 261 10 266 3.00e-17 80.1
Msa0641340 AT1G10310.1 31.100 209 138 5 1 207 3 207 3.08e-17 79.3
Msa0641340 AT4G13180.1 28.996 269 175 8 1 259 1 263 8.80e-17 78.2
Msa0641340 AT2G29310.3 31.250 192 127 3 14 202 7 196 3.69e-16 75.5
Msa0641340 AT5G50700.1 25.877 228 156 6 14 235 45 265 5.69e-16 77.0
Msa0641340 AT5G50600.1 25.877 228 156 6 14 235 45 265 5.69e-16 77.0
Msa0641340 AT3G03980.1 26.165 279 172 8 1 256 1 268 1.46e-14 72.4
Msa0641340 AT5G50770.1 31.000 200 132 5 16 212 47 243 1.50e-14 72.8
Msa0641340 AT2G29310.2 29.167 192 131 4 70 259 63 251 1.52e-14 72.0
Msa0641340 AT2G29350.2 29.688 192 130 3 14 202 15 204 1.77e-14 71.2
Msa0641340 AT5G04900.1 31.361 169 111 2 20 183 83 251 1.93e-14 72.8
Msa0641340 AT2G29350.3 27.041 196 139 3 70 264 35 227 1.01e-13 69.3
Msa0641340 AT2G29320.3 31.707 205 131 6 1 200 1 201 1.90e-13 68.2
Msa0641340 AT2G29290.1 26.020 196 140 3 70 264 48 239 2.69e-13 68.2

Find 98 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATTCATTATTGGTAAA+TGG 0.225496 4_3:-41711843 None:intergenic
AGCTTGGACCATTCGGTATT+AGG 0.230853 4_3:-41710811 Msa0641340:CDS
AACGCCAACTTTAGTACTAT+TGG 0.260644 4_3:-41711719 Msa0641340:five_prime_UTR
ATTGATGATAGAGTAATTCT+TGG 0.285821 4_3:-41710478 Msa0641340:three_prime_UTR
GCACAAGATTAGTACCCTTT+AGG 0.313335 4_3:+41710696 None:intergenic
AACTTGGTTGGCGTCTTTCT+TGG 0.316400 4_3:-41710986 Msa0641340:CDS
GCTTGGACCATTCGGTATTA+GGG 0.326280 4_3:-41710810 Msa0641340:CDS
TGGATAGTCGAGGAGAAATA+TGG 0.343538 4_3:+41711620 None:intergenic
AACCGTTCCAATGGTCTCTA+AGG 0.351538 4_3:-41711573 Msa0641340:CDS
TCTTATAATGTTACAAATCA+AGG 0.360253 4_3:+41710295 None:intergenic
GCAGCTTCAGCCACATCTTT+AGG 0.363734 4_3:+41710674 None:intergenic
ATAGGAGTCGCAAGAAAATA+AGG 0.364524 4_3:+41710773 None:intergenic
GATATCTAGTTTACCGTACT+TGG 0.373680 4_3:+41711096 None:intergenic
ACCGGTGGTGCGAGCGGTAT+TGG 0.389217 4_3:-41711292 Msa0641340:CDS
TTATTATGTAGTTGCCTTTG+TGG 0.400663 4_3:+41711745 None:intergenic
GGCTGAAGCTGCTCTGTACT+TGG 0.402325 4_3:-41710663 Msa0641340:CDS
GGTCTTAATCTTGTCATAGA+TGG 0.404623 4_3:-41710614 Msa0641340:CDS
AACTTGTTTATACCTTCTTA+AGG 0.414752 4_3:+41711550 None:intergenic
AAACAAATTATCTGAATTTG+AGG 0.415679 4_3:-41711023 Msa0641340:CDS
AGTTCAAAGCACGGCGTTGT+TGG 0.422887 4_3:-41710857 Msa0641340:CDS
TAGAGTGTCCTTTGTCGTCT+TGG 0.425344 4_3:+41711212 None:intergenic
ATCAAGGTTTGAATTTCAAC+TGG 0.430055 4_3:+41710311 None:intergenic
CGATGCAATAAGACAGTTGA+AGG 0.430932 4_3:-41711661 Msa0641340:five_prime_UTR
CTTGGAAACGGTTGTGTTCA+CGG 0.433597 4_3:+41711114 None:intergenic
GATGAGTCTAAGTATGTTAG+TGG 0.435502 4_3:-41710635 Msa0641340:CDS
GTTCAAAGCACGGCGTTGTT+GGG 0.435762 4_3:-41710856 Msa0641340:CDS
GTGATTAAAGTTAACTTGGT+TGG 0.442187 4_3:-41710998 Msa0641340:CDS
CTTAAGGCCTTAGAGACCAT+TGG 0.443220 4_3:+41711566 None:intergenic
AATTTCTTTAAGCTTGATGA+TGG 0.444421 4_3:-41710743 Msa0641340:CDS
GGGAAGGTGGCTCTGATCAC+CGG 0.449053 4_3:-41711310 Msa0641340:CDS
TCTTTAAGCTTGATGATGGT+GGG 0.454681 4_3:-41710739 Msa0641340:CDS
ATAAACAAAGTGGAAGTATA+CGG 0.455577 4_3:-41710419 Msa0641340:three_prime_UTR
GGAAGTGATTAAAGTTAACT+TGG 0.460772 4_3:-41711002 Msa0641340:CDS
AACACAACCGTTTCCAAGTA+CGG 0.463216 4_3:-41711109 Msa0641340:CDS
AGAAACACGGCCATCGAGCT+TGG 0.469330 4_3:-41710827 Msa0641340:CDS
GCCATCGAGCTTGGACCATT+CGG 0.474487 4_3:-41710818 Msa0641340:CDS
CGAGGAGAAATATGGTTGTA+TGG 0.479793 4_3:+41711628 None:intergenic
ATTTACAAGGCTTGAGGGGA+AGG 0.480148 4_3:-41711326 Msa0641340:intron
GTGGTAACACACGGAACATA+TGG 0.480251 4_3:+41711771 None:intergenic
ATTATGCTACCCCGTCGAGC+AGG 0.480860 4_3:+41710935 None:intergenic
GGTAATGATCCCTGCTCGAC+GGG 0.482899 4_3:-41710945 Msa0641340:CDS
CTTTAAGCTTGATGATGGTG+GGG 0.483378 4_3:-41710738 Msa0641340:CDS
ATTCGAGGCAATTACATTCG+TGG 0.487203 4_3:-41710360 Msa0641340:three_prime_UTR
ATTCATTATTGGTAAATGGT+TGG 0.497500 4_3:-41711839 None:intergenic
CGATTCATTTACAAGGCTTG+AGG 0.503603 4_3:-41711332 Msa0641340:intron
ACCAATACCGCTCGCACCAC+CGG 0.503816 4_3:+41711291 None:intergenic
TAGTTTACCGTACTTGGAAA+CGG 0.505519 4_3:+41711102 None:intergenic
GATTCATTTACAAGGCTTGA+GGG 0.505651 4_3:-41711331 Msa0641340:intron
TTCTTTAAGCTTGATGATGG+TGG 0.511555 4_3:-41710740 Msa0641340:CDS
ACCAATGCTTCCACCAACAC+TGG 0.517064 4_3:+41710904 None:intergenic
AGTGTTGGTGGAAGCATTGG+TGG 0.519339 4_3:-41710902 Msa0641340:CDS
TGTGTATGTCAAATTGAGGT+TGG 0.532404 4_3:+41710251 None:intergenic
AACGACTTGAGCCCCATGCT+CGG 0.536193 4_3:+41711246 None:intergenic
TTGGAACAAAGCATGCATCA+AGG 0.538346 4_3:-41710967 Msa0641340:CDS
GCCAGTGTTGGTGGAAGCAT+TGG 0.538454 4_3:-41710905 Msa0641340:CDS
ATTAACACAGCCAGTGTTGG+TGG 0.541696 4_3:-41710914 Msa0641340:CDS
TTAAAGAAATTTGTAACCAT+AGG 0.542029 4_3:+41710755 None:intergenic
GCTGAAGCTGCTCTGTACTT+GGG 0.550906 4_3:-41710662 Msa0641340:CDS
GTTCAAACACACAAAATCCA+TGG 0.551317 4_3:+41710573 None:intergenic
ACCGAATGGTCCAAGCTCGA+TGG 0.561776 4_3:+41710817 None:intergenic
CAGAATGGCAACCGTTCCAA+TGG 0.572724 4_3:-41711582 Msa0641340:exon
TGTCACGTCACAACGAACAT+AGG 0.574819 4_3:+41711159 None:intergenic
TGGAACAAAGCATGCATCAA+GGG 0.577105 4_3:-41710966 Msa0641340:CDS
GGCCTTAGAGACCATTGGAA+CGG 0.577738 4_3:+41711571 None:intergenic
CTGATCACCGGTGGTGCGAG+CGG 0.585052 4_3:-41711298 Msa0641340:CDS
TACAAGGCTTGAGGGGAAGG+TGG 0.585321 4_3:-41711323 Msa0641340:intron
GAAACTTGAAAAGCTCAGAA+TGG 0.586562 4_3:-41711597 Msa0641340:exon
AATATATGCTCAGTACGTGT+AGG 0.587722 4_3:-41710540 Msa0641340:three_prime_UTR
CTTAATCTTGTCATAGATGG+AGG 0.588109 4_3:-41710611 Msa0641340:CDS
GGGTAATGATCCCTGCTCGA+CGG 0.588135 4_3:-41710946 Msa0641340:CDS
GATATCATGTTTAACAACGC+TGG 0.588151 4_3:-41711079 Msa0641340:CDS
TGGTCTCTAAGGCCTTAAGA+AGG 0.591043 4_3:-41711562 Msa0641340:intron
TTCAAGTTTCTGGATAGTCG+AGG 0.593049 4_3:+41711610 None:intergenic
ATAATTAACACAGCCAGTGT+TGG 0.597332 4_3:-41710917 Msa0641340:CDS
GGAGTCAGTGTCGCTAACCA+TGG 0.600283 4_3:-41710590 Msa0641340:CDS
CGATACTCAAATAAACAAAG+TGG 0.604236 4_3:-41710429 Msa0641340:three_prime_UTR
TTATGCTACCCCGTCGAGCA+GGG 0.605399 4_3:+41710936 None:intergenic
TTTAACAACGCTGGCATAAG+CGG 0.605608 4_3:-41711070 Msa0641340:CDS
ATATGTTCCGTGTGTTACCA+CGG 0.606588 4_3:-41711769 Msa0641340:five_prime_UTR
TGGTGCGAGCGGTATTGGTG+AGG 0.611724 4_3:-41711287 Msa0641340:CDS
GACATGTGTATGTCAAATTG+AGG 0.613490 4_3:+41710247 None:intergenic
TCAATCATATAATAAAATGT+CGG 0.613502 4_3:+41710496 None:intergenic
TGTTCGTTGTGACGTGACAA+AGG 0.616110 4_3:-41711155 Msa0641340:CDS
TTGTGGACCGTGGTAACACA+CGG 0.617080 4_3:+41711762 None:intergenic
TTTGAACTTGTGTAGGCATG+TGG 0.618438 4_3:+41710872 None:intergenic
GCCGTGCTTTGAACTTGTGT+AGG 0.622128 4_3:+41710865 None:intergenic
TAATCTTGTGCCTAAAGATG+TGG 0.622940 4_3:-41710684 Msa0641340:CDS
ACAACGAACATAGGAAGAAG+AGG 0.624459 4_3:+41711168 None:intergenic
GCCTACACAAGTTCAAAGCA+CGG 0.640398 4_3:-41710866 Msa0641340:CDS
ATTCATTTACAAGGCTTGAG+GGG 0.646261 4_3:-41711330 Msa0641340:intron
AAGGTGGCTCTGATCACCGG+TGG 0.652302 4_3:-41711307 Msa0641340:CDS
GTAGTTGCCTTTGTGGACCG+TGG 0.655703 4_3:+41711752 None:intergenic
CAATTCACCCTAATACCGAA+TGG 0.666486 4_3:+41710803 None:intergenic
TGTGTTACCACGGTCCACAA+AGG 0.667043 4_3:-41711759 Msa0641340:five_prime_UTR
GCTGACATCCAAGACGACAA+AGG 0.668183 4_3:-41711220 Msa0641340:CDS
TGTTGGGCTGATGAGAAACA+CGG 0.702541 4_3:-41710840 Msa0641340:CDS
GTAATGATCCCTGCTCGACG+GGG 0.704946 4_3:-41710944 Msa0641340:CDS
ATGCTCGGAAAAGAGTCTTG+CGG 0.733799 4_3:+41711261 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAAATTAAAACATG+TGG - chr4_3:41710265-41710284 Msa0641340:three_prime_UTR 10.0%
!!! ATTTATTTTGTGTATATTAA+TGG - chr4_3:41710551-41710570 Msa0641340:exon 10.0%
!!! TTTTTAAAAATTAAAACATG+TGG - chr4_3:41710265-41710284 Msa0641340:three_prime_UTR 10.0%
!!! ATTTATTTTGTGTATATTAA+TGG - chr4_3:41710551-41710570 Msa0641340:exon 10.0%
!! TACACAAAATAAATGAAATA+AGG + chr4_3:41710545-41710564 None:intergenic 15.0%
!! GATTTATGAAAAAATATAAG+TGG - chr4_3:41710647-41710666 Msa0641340:CDS 15.0%
!!! TTATTTTACTTAAATTTGTG+TGG + chr4_3:41710696-41710715 None:intergenic 15.0%
!! TCAATCATATAATAAAATGT+CGG + chr4_3:41711567-41711586 None:intergenic 15.0%
!! TACACAAAATAAATGAAATA+AGG + chr4_3:41710545-41710564 None:intergenic 15.0%
!! GATTTATGAAAAAATATAAG+TGG - chr4_3:41710647-41710666 Msa0641340:CDS 15.0%
!!! TTATTTTACTTAAATTTGTG+TGG + chr4_3:41710696-41710715 None:intergenic 15.0%
!! TCAATCATATAATAAAATGT+CGG + chr4_3:41711567-41711586 None:intergenic 15.0%
!! TTGGAAAAATGATTAAAGTT+TGG - chr4_3:41710360-41710379 Msa0641340:three_prime_UTR 20.0%
!! TGGAAAAATGATTAAAGTTT+GGG - chr4_3:41710361-41710380 Msa0641340:three_prime_UTR 20.0%
!!! CGTATATTTATGTAAGATTT+TGG + chr4_3:41710628-41710647 None:intergenic 20.0%
!! AAACAAATTATCTGAATTTG+AGG - chr4_3:41711037-41711056 Msa0641340:CDS 20.0%
!! TTAAAGAAATTTGTAACCAT+AGG + chr4_3:41711308-41711327 None:intergenic 20.0%
!!! AGATATTTTTTCTAACCTAA+AGG - chr4_3:41711349-41711368 Msa0641340:intron 20.0%
!!! GATATTTTTTCTAACCTAAA+GGG - chr4_3:41711350-41711369 Msa0641340:intron 20.0%
!!! TCATAATTTATTTTCATTCG+AGG - chr4_3:41711685-41711704 Msa0641340:five_prime_UTR 20.0%
!! TCTTATAATGTTACAAATCA+AGG + chr4_3:41711768-41711787 None:intergenic 20.0%
!! TTGGAAAAATGATTAAAGTT+TGG - chr4_3:41710360-41710379 Msa0641340:three_prime_UTR 20.0%
!! TGGAAAAATGATTAAAGTTT+GGG - chr4_3:41710361-41710380 Msa0641340:three_prime_UTR 20.0%
!!! CGTATATTTATGTAAGATTT+TGG + chr4_3:41710628-41710647 None:intergenic 20.0%
!! AAACAAATTATCTGAATTTG+AGG - chr4_3:41711037-41711056 Msa0641340:CDS 20.0%
!! TTAAAGAAATTTGTAACCAT+AGG + chr4_3:41711308-41711327 None:intergenic 20.0%
!!! AGATATTTTTTCTAACCTAA+AGG - chr4_3:41711349-41711368 Msa0641340:intron 20.0%
!!! GATATTTTTTCTAACCTAAA+GGG - chr4_3:41711350-41711369 Msa0641340:intron 20.0%
!!! TCATAATTTATTTTCATTCG+AGG - chr4_3:41711685-41711704 Msa0641340:five_prime_UTR 20.0%
!! TCTTATAATGTTACAAATCA+AGG + chr4_3:41711768-41711787 None:intergenic 20.0%
!! TTTTCCAATAGTACTAAAGT+TGG + chr4_3:41710348-41710367 None:intergenic 25.0%
! GGAAAAATGATTAAAGTTTG+GGG - chr4_3:41710362-41710381 Msa0641340:three_prime_UTR 25.0%
!! AACTTGTTTATACCTTCTTA+AGG + chr4_3:41710513-41710532 None:intergenic 25.0%
! AAATATAAGTGGACATTTGA+AGG - chr4_3:41710658-41710677 Msa0641340:CDS 25.0%
! AATTTCTTTAAGCTTGATGA+TGG - chr4_3:41711317-41711336 Msa0641340:CDS 25.0%
!! ATTGATGATAGAGTAATTCT+TGG - chr4_3:41711582-41711601 Msa0641340:exon 25.0%
!! ATAAACAAAGTGGAAGTATA+CGG - chr4_3:41711641-41711660 Msa0641340:five_prime_UTR 25.0%
!! CATGTCTTTTATAATACATG+CGG - chr4_3:41711830-41711849 Msa0641340:five_prime_UTR 25.0%
!! ATGTCTTTTATAATACATGC+GGG - chr4_3:41711831-41711850 Msa0641340:five_prime_UTR 25.0%
!! TTTTCCAATAGTACTAAAGT+TGG + chr4_3:41710348-41710367 None:intergenic 25.0%
! GGAAAAATGATTAAAGTTTG+GGG - chr4_3:41710362-41710381 Msa0641340:three_prime_UTR 25.0%
!! AACTTGTTTATACCTTCTTA+AGG + chr4_3:41710513-41710532 None:intergenic 25.0%
! AAATATAAGTGGACATTTGA+AGG - chr4_3:41710658-41710677 Msa0641340:CDS 25.0%
! AATTTCTTTAAGCTTGATGA+TGG - chr4_3:41711317-41711336 Msa0641340:CDS 25.0%
!! ATTGATGATAGAGTAATTCT+TGG - chr4_3:41711582-41711601 Msa0641340:exon 25.0%
!! ATAAACAAAGTGGAAGTATA+CGG - chr4_3:41711641-41711660 Msa0641340:five_prime_UTR 25.0%
TTATTATGTAGTTGCCTTTG+TGG + chr4_3:41710318-41710337 None:intergenic 30.0%
AGATAATCACAGACTTAAGT+TGG + chr4_3:41710605-41710624 None:intergenic 30.0%
GGAAGTGATTAAAGTTAACT+TGG - chr4_3:41711058-41711077 Msa0641340:CDS 30.0%
! GTGATTAAAGTTAACTTGGT+TGG - chr4_3:41711062-41711081 Msa0641340:CDS 30.0%
CGATACTCAAATAAACAAAG+TGG - chr4_3:41711631-41711650 Msa0641340:five_prime_UTR 30.0%
ATCAAGGTTTGAATTTCAAC+TGG + chr4_3:41711752-41711771 None:intergenic 30.0%
TTATTATGTAGTTGCCTTTG+TGG + chr4_3:41710318-41710337 None:intergenic 30.0%
AGATAATCACAGACTTAAGT+TGG + chr4_3:41710605-41710624 None:intergenic 30.0%
GGAAGTGATTAAAGTTAACT+TGG - chr4_3:41711058-41711077 Msa0641340:CDS 30.0%
! GTGATTAAAGTTAACTTGGT+TGG - chr4_3:41711062-41711081 Msa0641340:CDS 30.0%
CGATACTCAAATAAACAAAG+TGG - chr4_3:41711631-41711650 Msa0641340:five_prime_UTR 30.0%
ATCAAGGTTTGAATTTCAAC+TGG + chr4_3:41711752-41711771 None:intergenic 30.0%
AACGCCAACTTTAGTACTAT+TGG - chr4_3:41710341-41710360 Msa0641340:three_prime_UTR 35.0%
!!! TTCTGAGCTTTTCAAGTTTC+TGG + chr4_3:41710463-41710482 None:intergenic 35.0%
GAAACTTGAAAAGCTCAGAA+TGG - chr4_3:41710463-41710482 Msa0641340:three_prime_UTR 35.0%
ACATGCTCGATTCATTTACA+AGG - chr4_3:41710721-41710740 Msa0641340:CDS 35.0%
GATTCATTTACAAGGCTTGA+GGG - chr4_3:41710729-41710748 Msa0641340:CDS 35.0%
ATTCATTTACAAGGCTTGAG+GGG - chr4_3:41710730-41710749 Msa0641340:CDS 35.0%
TAGTTTACCGTACTTGGAAA+CGG + chr4_3:41710961-41710980 None:intergenic 35.0%
! GATATCTAGTTTACCGTACT+TGG + chr4_3:41710967-41710986 None:intergenic 35.0%
GATATCATGTTTAACAACGC+TGG - chr4_3:41710981-41711000 Msa0641340:CDS 35.0%
ATAATTAACACAGCCAGTGT+TGG - chr4_3:41711143-41711162 Msa0641340:CDS 35.0%
ATAGGAGTCGCAAGAAAATA+AGG + chr4_3:41711290-41711309 None:intergenic 35.0%
! TTATTTTCTTGCGACTCCTA+TGG - chr4_3:41711289-41711308 Msa0641340:CDS 35.0%
!! TTCTTTAAGCTTGATGATGG+TGG - chr4_3:41711320-41711339 Msa0641340:CDS 35.0%
!! TCTTTAAGCTTGATGATGGT+GGG - chr4_3:41711321-41711340 Msa0641340:intron 35.0%
TAATCTTGTGCCTAAAGATG+TGG - chr4_3:41711376-41711395 Msa0641340:intron 35.0%
GATGAGTCTAAGTATGTTAG+TGG - chr4_3:41711425-41711444 Msa0641340:intron 35.0%
GGTCTTAATCTTGTCATAGA+TGG - chr4_3:41711446-41711465 Msa0641340:intron 35.0%
CTTAATCTTGTCATAGATGG+AGG - chr4_3:41711449-41711468 Msa0641340:intron 35.0%
GTTCAAACACACAAAATCCA+TGG + chr4_3:41711490-41711509 None:intergenic 35.0%
AATATATGCTCAGTACGTGT+AGG - chr4_3:41711520-41711539 Msa0641340:intron 35.0%
TGTGTATGTCAAATTGAGGT+TGG + chr4_3:41711812-41711831 None:intergenic 35.0%
GACATGTGTATGTCAAATTG+AGG + chr4_3:41711816-41711835 None:intergenic 35.0%
AACGCCAACTTTAGTACTAT+TGG - chr4_3:41710341-41710360 Msa0641340:three_prime_UTR 35.0%
!!! TTCTGAGCTTTTCAAGTTTC+TGG + chr4_3:41710463-41710482 None:intergenic 35.0%
GAAACTTGAAAAGCTCAGAA+TGG - chr4_3:41710463-41710482 Msa0641340:three_prime_UTR 35.0%
ACATGCTCGATTCATTTACA+AGG - chr4_3:41710721-41710740 Msa0641340:CDS 35.0%
GATTCATTTACAAGGCTTGA+GGG - chr4_3:41710729-41710748 Msa0641340:CDS 35.0%
ATTCATTTACAAGGCTTGAG+GGG - chr4_3:41710730-41710749 Msa0641340:CDS 35.0%
TAGTTTACCGTACTTGGAAA+CGG + chr4_3:41710961-41710980 None:intergenic 35.0%
! GATATCTAGTTTACCGTACT+TGG + chr4_3:41710967-41710986 None:intergenic 35.0%
GATATCATGTTTAACAACGC+TGG - chr4_3:41710981-41711000 Msa0641340:CDS 35.0%
ATAATTAACACAGCCAGTGT+TGG - chr4_3:41711143-41711162 Msa0641340:CDS 35.0%
ATAGGAGTCGCAAGAAAATA+AGG + chr4_3:41711290-41711309 None:intergenic 35.0%
! TTATTTTCTTGCGACTCCTA+TGG - chr4_3:41711289-41711308 Msa0641340:CDS 35.0%
!! TTCTTTAAGCTTGATGATGG+TGG - chr4_3:41711320-41711339 Msa0641340:CDS 35.0%
!! TCTTTAAGCTTGATGATGGT+GGG - chr4_3:41711321-41711340 Msa0641340:intron 35.0%
TAATCTTGTGCCTAAAGATG+TGG - chr4_3:41711376-41711395 Msa0641340:intron 35.0%
GATGAGTCTAAGTATGTTAG+TGG - chr4_3:41711425-41711444 Msa0641340:intron 35.0%
GGTCTTAATCTTGTCATAGA+TGG - chr4_3:41711446-41711465 Msa0641340:intron 35.0%
CTTAATCTTGTCATAGATGG+AGG - chr4_3:41711449-41711468 Msa0641340:intron 35.0%
GTTCAAACACACAAAATCCA+TGG + chr4_3:41711490-41711509 None:intergenic 35.0%
AATATATGCTCAGTACGTGT+AGG - chr4_3:41711520-41711539 Msa0641340:intron 35.0%
TGTGTATGTCAAATTGAGGT+TGG + chr4_3:41711812-41711831 None:intergenic 35.0%
GACATGTGTATGTCAAATTG+AGG + chr4_3:41711816-41711835 None:intergenic 35.0%
ATATGTTCCGTGTGTTACCA+CGG - chr4_3:41710291-41710310 Msa0641340:three_prime_UTR 40.0%
CGATGCAATAAGACAGTTGA+AGG - chr4_3:41710399-41710418 Msa0641340:three_prime_UTR 40.0%
CGAGGAGAAATATGGTTGTA+TGG + chr4_3:41710435-41710454 None:intergenic 40.0%
TGGATAGTCGAGGAGAAATA+TGG + chr4_3:41710443-41710462 None:intergenic 40.0%
! TTCAAGTTTCTGGATAGTCG+AGG + chr4_3:41710453-41710472 None:intergenic 40.0%
CGATTCATTTACAAGGCTTG+AGG - chr4_3:41710728-41710747 Msa0641340:CDS 40.0%
ACAACGAACATAGGAAGAAG+AGG + chr4_3:41710895-41710914 None:intergenic 40.0%
AACACAACCGTTTCCAAGTA+CGG - chr4_3:41710951-41710970 Msa0641340:CDS 40.0%
TTTAACAACGCTGGCATAAG+CGG - chr4_3:41710990-41711009 Msa0641340:CDS 40.0%
TTGGAACAAAGCATGCATCA+AGG - chr4_3:41711093-41711112 Msa0641340:CDS 40.0%
TGGAACAAAGCATGCATCAA+GGG - chr4_3:41711094-41711113 Msa0641340:CDS 40.0%
TTTGAACTTGTGTAGGCATG+TGG + chr4_3:41711191-41711210 None:intergenic 40.0%
CAATTCACCCTAATACCGAA+TGG + chr4_3:41711260-41711279 None:intergenic 40.0%
!! CTTTAAGCTTGATGATGGTG+GGG - chr4_3:41711322-41711341 Msa0641340:intron 40.0%
GCACAAGATTAGTACCCTTT+AGG + chr4_3:41711367-41711386 None:intergenic 40.0%
ATTCGAGGCAATTACATTCG+TGG - chr4_3:41711700-41711719 Msa0641340:five_prime_UTR 40.0%
ATATGTTCCGTGTGTTACCA+CGG - chr4_3:41710291-41710310 Msa0641340:three_prime_UTR 40.0%
CGATGCAATAAGACAGTTGA+AGG - chr4_3:41710399-41710418 Msa0641340:three_prime_UTR 40.0%
CGAGGAGAAATATGGTTGTA+TGG + chr4_3:41710435-41710454 None:intergenic 40.0%
TGGATAGTCGAGGAGAAATA+TGG + chr4_3:41710443-41710462 None:intergenic 40.0%
! TTCAAGTTTCTGGATAGTCG+AGG + chr4_3:41710453-41710472 None:intergenic 40.0%
CGATTCATTTACAAGGCTTG+AGG - chr4_3:41710728-41710747 Msa0641340:CDS 40.0%
ACAACGAACATAGGAAGAAG+AGG + chr4_3:41710895-41710914 None:intergenic 40.0%
AACACAACCGTTTCCAAGTA+CGG - chr4_3:41710951-41710970 Msa0641340:CDS 40.0%
TTTAACAACGCTGGCATAAG+CGG - chr4_3:41710990-41711009 Msa0641340:CDS 40.0%
TTGGAACAAAGCATGCATCA+AGG - chr4_3:41711093-41711112 Msa0641340:CDS 40.0%
TGGAACAAAGCATGCATCAA+GGG - chr4_3:41711094-41711113 Msa0641340:CDS 40.0%
TTTGAACTTGTGTAGGCATG+TGG + chr4_3:41711191-41711210 None:intergenic 40.0%
CAATTCACCCTAATACCGAA+TGG + chr4_3:41711260-41711279 None:intergenic 40.0%
!! CTTTAAGCTTGATGATGGTG+GGG - chr4_3:41711322-41711341 Msa0641340:intron 40.0%
GCACAAGATTAGTACCCTTT+AGG + chr4_3:41711367-41711386 None:intergenic 40.0%
ATTCGAGGCAATTACATTCG+TGG - chr4_3:41711700-41711719 Msa0641340:five_prime_UTR 40.0%
GTGGTAACACACGGAACATA+TGG + chr4_3:41710292-41710311 None:intergenic 45.0%
AACCGTTCCAATGGTCTCTA+AGG - chr4_3:41710487-41710506 Msa0641340:three_prime_UTR 45.0%
CTTAAGGCCTTAGAGACCAT+TGG + chr4_3:41710497-41710516 None:intergenic 45.0%
!! TGGTCTCTAAGGCCTTAAGA+AGG - chr4_3:41710498-41710517 Msa0641340:three_prime_UTR 45.0%
ATTTACAAGGCTTGAGGGGA+AGG - chr4_3:41710734-41710753 Msa0641340:CDS 45.0%
ATGCTCGGAAAAGAGTCTTG+CGG + chr4_3:41710802-41710821 None:intergenic 45.0%
! CAAGACTCTTTTCCGAGCAT+GGG - chr4_3:41710802-41710821 Msa0641340:CDS 45.0%
! AAGACTCTTTTCCGAGCATG+GGG - chr4_3:41710803-41710822 Msa0641340:CDS 45.0%
! TAGAGTGTCCTTTGTCGTCT+TGG + chr4_3:41710851-41710870 None:intergenic 45.0%
TGTCACGTCACAACGAACAT+AGG + chr4_3:41710904-41710923 None:intergenic 45.0%
TGTTCGTTGTGACGTGACAA+AGG - chr4_3:41710905-41710924 Msa0641340:CDS 45.0%
CTTGGAAACGGTTGTGTTCA+CGG + chr4_3:41710949-41710968 None:intergenic 45.0%
AACTTGGTTGGCGTCTTTCT+TGG - chr4_3:41711074-41711093 Msa0641340:CDS 45.0%
! ATTAACACAGCCAGTGTTGG+TGG - chr4_3:41711146-41711165 Msa0641340:CDS 45.0%
GCCTACACAAGTTCAAAGCA+CGG - chr4_3:41711194-41711213 Msa0641340:CDS 45.0%
TGTTGGGCTGATGAGAAACA+CGG - chr4_3:41711220-41711239 Msa0641340:CDS 45.0%
AGCTTGGACCATTCGGTATT+AGG - chr4_3:41711249-41711268 Msa0641340:CDS 45.0%
GCTTGGACCATTCGGTATTA+GGG - chr4_3:41711250-41711269 Msa0641340:CDS 45.0%
GTGGTAACACACGGAACATA+TGG + chr4_3:41710292-41710311 None:intergenic 45.0%
AACCGTTCCAATGGTCTCTA+AGG - chr4_3:41710487-41710506 Msa0641340:three_prime_UTR 45.0%
CTTAAGGCCTTAGAGACCAT+TGG + chr4_3:41710497-41710516 None:intergenic 45.0%
!! TGGTCTCTAAGGCCTTAAGA+AGG - chr4_3:41710498-41710517 Msa0641340:three_prime_UTR 45.0%
ATTTACAAGGCTTGAGGGGA+AGG - chr4_3:41710734-41710753 Msa0641340:CDS 45.0%
ATGCTCGGAAAAGAGTCTTG+CGG + chr4_3:41710802-41710821 None:intergenic 45.0%
! CAAGACTCTTTTCCGAGCAT+GGG - chr4_3:41710802-41710821 Msa0641340:CDS 45.0%
! AAGACTCTTTTCCGAGCATG+GGG - chr4_3:41710803-41710822 Msa0641340:CDS 45.0%
! TAGAGTGTCCTTTGTCGTCT+TGG + chr4_3:41710851-41710870 None:intergenic 45.0%
TGTCACGTCACAACGAACAT+AGG + chr4_3:41710904-41710923 None:intergenic 45.0%
TGTTCGTTGTGACGTGACAA+AGG - chr4_3:41710905-41710924 Msa0641340:CDS 45.0%
CTTGGAAACGGTTGTGTTCA+CGG + chr4_3:41710949-41710968 None:intergenic 45.0%
AACTTGGTTGGCGTCTTTCT+TGG - chr4_3:41711074-41711093 Msa0641340:CDS 45.0%
! ATTAACACAGCCAGTGTTGG+TGG - chr4_3:41711146-41711165 Msa0641340:CDS 45.0%
GCCTACACAAGTTCAAAGCA+CGG - chr4_3:41711194-41711213 Msa0641340:CDS 45.0%
TGTTGGGCTGATGAGAAACA+CGG - chr4_3:41711220-41711239 Msa0641340:CDS 45.0%
AGCTTGGACCATTCGGTATT+AGG - chr4_3:41711249-41711268 Msa0641340:CDS 45.0%
GCTTGGACCATTCGGTATTA+GGG - chr4_3:41711250-41711269 Msa0641340:CDS 45.0%
!!! TGTTTTAATTTTTAAAAATT+AGG + chr4_3:41710263-41710282 None:intergenic 5.0%
!!! TGTTTTAATTTTTAAAAATT+AGG + chr4_3:41710263-41710282 None:intergenic 5.0%
TTGTGGACCGTGGTAACACA+CGG + chr4_3:41710301-41710320 None:intergenic 50.0%
TGTGTTACCACGGTCCACAA+AGG - chr4_3:41710301-41710320 Msa0641340:three_prime_UTR 50.0%
CAGAATGGCAACCGTTCCAA+TGG - chr4_3:41710478-41710497 Msa0641340:three_prime_UTR 50.0%
GGCCTTAGAGACCATTGGAA+CGG + chr4_3:41710492-41710511 None:intergenic 50.0%
! GCAAGACTCTTTTCCGAGCA+TGG - chr4_3:41710801-41710820 Msa0641340:CDS 50.0%
GCTGACATCCAAGACGACAA+AGG - chr4_3:41710840-41710859 Msa0641340:CDS 50.0%
ACCAATGCTTCCACCAACAC+TGG + chr4_3:41711159-41711178 None:intergenic 50.0%
!! AGTGTTGGTGGAAGCATTGG+TGG - chr4_3:41711158-41711177 Msa0641340:CDS 50.0%
! GCCGTGCTTTGAACTTGTGT+AGG + chr4_3:41711198-41711217 None:intergenic 50.0%
AGTTCAAAGCACGGCGTTGT+TGG - chr4_3:41711203-41711222 Msa0641340:CDS 50.0%
GTTCAAAGCACGGCGTTGTT+GGG - chr4_3:41711204-41711223 Msa0641340:CDS 50.0%
GCAGCTTCAGCCACATCTTT+AGG + chr4_3:41711389-41711408 None:intergenic 50.0%
GCTGAAGCTGCTCTGTACTT+GGG - chr4_3:41711398-41711417 Msa0641340:intron 50.0%
TTGTGGACCGTGGTAACACA+CGG + chr4_3:41710301-41710320 None:intergenic 50.0%
TGTGTTACCACGGTCCACAA+AGG - chr4_3:41710301-41710320 Msa0641340:three_prime_UTR 50.0%
CAGAATGGCAACCGTTCCAA+TGG - chr4_3:41710478-41710497 Msa0641340:three_prime_UTR 50.0%
GGCCTTAGAGACCATTGGAA+CGG + chr4_3:41710492-41710511 None:intergenic 50.0%
! GCAAGACTCTTTTCCGAGCA+TGG - chr4_3:41710801-41710820 Msa0641340:CDS 50.0%
GCTGACATCCAAGACGACAA+AGG - chr4_3:41710840-41710859 Msa0641340:CDS 50.0%
ACCAATGCTTCCACCAACAC+TGG + chr4_3:41711159-41711178 None:intergenic 50.0%
!! AGTGTTGGTGGAAGCATTGG+TGG - chr4_3:41711158-41711177 Msa0641340:CDS 50.0%
! GCCGTGCTTTGAACTTGTGT+AGG + chr4_3:41711198-41711217 None:intergenic 50.0%
AGTTCAAAGCACGGCGTTGT+TGG - chr4_3:41711203-41711222 Msa0641340:CDS 50.0%
GTTCAAAGCACGGCGTTGTT+GGG - chr4_3:41711204-41711223 Msa0641340:CDS 50.0%
GCAGCTTCAGCCACATCTTT+AGG + chr4_3:41711389-41711408 None:intergenic 50.0%
GCTGAAGCTGCTCTGTACTT+GGG - chr4_3:41711398-41711417 Msa0641340:intron 50.0%
GTAGTTGCCTTTGTGGACCG+TGG + chr4_3:41710311-41710330 None:intergenic 55.0%
TACAAGGCTTGAGGGGAAGG+TGG - chr4_3:41710737-41710756 Msa0641340:CDS 55.0%
AACGACTTGAGCCCCATGCT+CGG + chr4_3:41710817-41710836 None:intergenic 55.0%
GGGTAATGATCCCTGCTCGA+CGG - chr4_3:41711114-41711133 Msa0641340:CDS 55.0%
GGTAATGATCCCTGCTCGAC+GGG - chr4_3:41711115-41711134 Msa0641340:CDS 55.0%
GTAATGATCCCTGCTCGACG+GGG - chr4_3:41711116-41711135 Msa0641340:CDS 55.0%
TTATGCTACCCCGTCGAGCA+GGG + chr4_3:41711127-41711146 None:intergenic 55.0%
ATTATGCTACCCCGTCGAGC+AGG + chr4_3:41711128-41711147 None:intergenic 55.0%
!! GCCAGTGTTGGTGGAAGCAT+TGG - chr4_3:41711155-41711174 Msa0641340:CDS 55.0%
AGAAACACGGCCATCGAGCT+TGG - chr4_3:41711233-41711252 Msa0641340:CDS 55.0%
GCCATCGAGCTTGGACCATT+CGG - chr4_3:41711242-41711261 Msa0641340:CDS 55.0%
ACCGAATGGTCCAAGCTCGA+TGG + chr4_3:41711246-41711265 None:intergenic 55.0%
GGCTGAAGCTGCTCTGTACT+TGG - chr4_3:41711397-41711416 Msa0641340:intron 55.0%
! GGAGTCAGTGTCGCTAACCA+TGG - chr4_3:41711470-41711489 Msa0641340:intron 55.0%
GTAGTTGCCTTTGTGGACCG+TGG + chr4_3:41710311-41710330 None:intergenic 55.0%
TACAAGGCTTGAGGGGAAGG+TGG - chr4_3:41710737-41710756 Msa0641340:CDS 55.0%
AACGACTTGAGCCCCATGCT+CGG + chr4_3:41710817-41710836 None:intergenic 55.0%
GGGTAATGATCCCTGCTCGA+CGG - chr4_3:41711114-41711133 Msa0641340:CDS 55.0%
GGTAATGATCCCTGCTCGAC+GGG - chr4_3:41711115-41711134 Msa0641340:CDS 55.0%
GTAATGATCCCTGCTCGACG+GGG - chr4_3:41711116-41711135 Msa0641340:CDS 55.0%
TTATGCTACCCCGTCGAGCA+GGG + chr4_3:41711127-41711146 None:intergenic 55.0%
ATTATGCTACCCCGTCGAGC+AGG + chr4_3:41711128-41711147 None:intergenic 55.0%
!! GCCAGTGTTGGTGGAAGCAT+TGG - chr4_3:41711155-41711174 Msa0641340:CDS 55.0%
AGAAACACGGCCATCGAGCT+TGG - chr4_3:41711233-41711252 Msa0641340:CDS 55.0%
GCCATCGAGCTTGGACCATT+CGG - chr4_3:41711242-41711261 Msa0641340:CDS 55.0%
ACCGAATGGTCCAAGCTCGA+TGG + chr4_3:41711246-41711265 None:intergenic 55.0%
GGCTGAAGCTGCTCTGTACT+TGG - chr4_3:41711397-41711416 Msa0641340:intron 55.0%
! GGAGTCAGTGTCGCTAACCA+TGG - chr4_3:41711470-41711489 Msa0641340:intron 55.0%
!! GGGAAGGTGGCTCTGATCAC+CGG - chr4_3:41710750-41710769 Msa0641340:CDS 60.0%
!! AAGGTGGCTCTGATCACCGG+TGG - chr4_3:41710753-41710772 Msa0641340:CDS 60.0%
ACCAATACCGCTCGCACCAC+CGG + chr4_3:41710772-41710791 None:intergenic 60.0%
!! TGGTGCGAGCGGTATTGGTG+AGG - chr4_3:41710773-41710792 Msa0641340:CDS 60.0%
!! GGGAAGGTGGCTCTGATCAC+CGG - chr4_3:41710750-41710769 Msa0641340:CDS 60.0%
!! AAGGTGGCTCTGATCACCGG+TGG - chr4_3:41710753-41710772 Msa0641340:CDS 60.0%
ACCAATACCGCTCGCACCAC+CGG + chr4_3:41710772-41710791 None:intergenic 60.0%
!! TGGTGCGAGCGGTATTGGTG+AGG - chr4_3:41710773-41710792 Msa0641340:CDS 60.0%
CTGATCACCGGTGGTGCGAG+CGG - chr4_3:41710762-41710781 Msa0641340:CDS 65.0%
ACCGGTGGTGCGAGCGGTAT+TGG - chr4_3:41710768-41710787 Msa0641340:CDS 65.0%
CTGATCACCGGTGGTGCGAG+CGG - chr4_3:41710762-41710781 Msa0641340:CDS 65.0%
ACCGGTGGTGCGAGCGGTAT+TGG - chr4_3:41710768-41710787 Msa0641340:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 41710231 41711851 41710231 ID=Msa0641340;Name=Msa0641340
chr4_3 mRNA 41710231 41711851 41710231 ID=Msa0641340-mRNA-1;Parent=Msa0641340;Name=Msa0641340-mRNA-1;_AED=0.24;_eAED=0.24;_QI=251|1|1|1|0|0|2|331|271
chr4_3 exon 41710231 41711339 41710231 ID=Msa0641340-mRNA-1:exon:9362;Parent=Msa0641340-mRNA-1
chr4_3 exon 41711563 41711851 41711563 ID=Msa0641340-mRNA-1:exon:9361;Parent=Msa0641340-mRNA-1
chr4_3 five_prime_UTR 41711601 41711851 41711601 ID=Msa0641340-mRNA-1:five_prime_utr;Parent=Msa0641340-mRNA-1
chr4_3 CDS 41711563 41711600 41711563 ID=Msa0641340-mRNA-1:cds;Parent=Msa0641340-mRNA-1
chr4_3 CDS 41710562 41711339 41710562 ID=Msa0641340-mRNA-1:cds;Parent=Msa0641340-mRNA-1
chr4_3 three_prime_UTR 41710231 41710561 41710231 ID=Msa0641340-mRNA-1:three_prime_utr;Parent=Msa0641340-mRNA-1
Gene Sequence

>Msa0641340

ATGGCAACCGTTCCAATGGTCTCTAAGGCCTTAAGAAGGCTTGAGGGGAAGGTGGCTCTGATCACCGGTGGTGCGAGCGGTATTGGTGAGGCTACCGCAAGACTCTTTTCCGAGCATGGGGCTCAAGTCGTTATAGCTGACATCCAAGACGACAAAGGACACTCTATTTGCAACGAGTTACACAAATCCTCTTCTTCCTATGTTCGTTGTGACGTGACAAAGGAAGAAGACATTGAAAACGCCGTGAACACAACCGTTTCCAAGTACGGTAAACTAGATATCATGTTTAACAACGCTGGCATAAGCGGTGTAAACAAAACAAAGATACTTGAAAACAAATTATCTGAATTTGAGGAAGTGATTAAAGTTAACTTGGTTGGCGTCTTTCTTGGAACAAAGCATGCATCAAGGGTAATGATCCCTGCTCGACGGGGTAGCATAATTAACACAGCCAGTGTTGGTGGAAGCATTGGTGGTTGTGCTCCACATGCCTACACAAGTTCAAAGCACGGCGTTGTTGGGCTGATGAGAAACACGGCCATCGAGCTTGGACCATTCGGTATTAGGGTGAATTGTGTGTCACCTTATTTTCTTGCGACTCCTATGGTTACAAATTTCTTTAAGCTTGATGATGGTGGGGCTCTAGATATTTTTTCTAACCTAAAGGGTACTAATCTTGTGCCTAAAGATGTGGCTGAAGCTGCTCTGTACTTGGGAAGTGATGAGTCTAAGTATGTTAGTGGTCTTAATCTTGTCATAGATGGAGGAGTCAGTGTCGCTAACCATGGATTTTGTGTGTTTGAACAATATGTTTGA

Protein sequence

>Msa0641340

MATVPMVSKALRRLEGKVALITGGASGIGEATARLFSEHGAQVVIADIQDDKGHSICNELHKSSSSYVRCDVTKEEDIENAVNTTVSKYGKLDIMFNNAGISGVNKTKILENKLSEFEEVIKVNLVGVFLGTKHASRVMIPARRGSIINTASVGGSIGGCAPHAYTSSKHGVVGLMRNTAIELGPFGIRVNCVSPYFLATPMVTNFFKLDDGGALDIFSNLKGTNLVPKDVAEAALYLGSDESKYVSGLNLVIDGGVSVANHGFCVFEQYV*