AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0289220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289220 MtrunA17_Chr1g0160961 48.529 272 87 8 98 320 1317 1584 1.46e-56 197
Msa0289220 MtrunA17_Chr1g0160961 47.619 126 26 3 3 89 1035 1159 9.56e-24 102
Msa0289220 MtrunA17_Chr5g0419891 44.601 213 75 6 98 271 1193 1401 7.78e-35 134
Msa0289220 MtrunA17_Chr5g0419891 46.825 126 27 3 3 89 911 1035 4.11e-23 100
Msa0289220 MtrunA17_Chr5g0419881 61.667 60 13 2 271 320 11 70 8.23e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289220 AT4G38440.1 30.165 242 138 6 98 308 1207 1448 2.95e-20 92.0

Find 92 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATCATTGATTTGTTAT+TGG 0.162023 2_3:+35461920 Msa0289220:three_prime_UTR
GCAGGATAATGAAGATATTT+TGG 0.185566 2_3:+35461108 Msa0289220:intron
GAAGCTTTACAGGATCTTTA+TGG 0.205527 2_3:+35460299 Msa0289220:CDS
ACAATTAAAGGTTATTAAAA+AGG 0.219657 2_3:+35462003 Msa0289220:three_prime_UTR
TGAAGTATTTGTACAAAATC+AGG 0.279723 2_3:+35460263 Msa0289220:CDS
TTATCTATCGATTTCCTTGT+TGG 0.306983 2_3:+35460237 Msa0289220:CDS
TGATGGAAATTCCTCTCTTC+TGG 0.319956 2_3:+35461527 Msa0289220:CDS
AACGGCAGGACCTGGGGATA+TGG 0.347297 2_3:+35459986 Msa0289220:CDS
ATTAGATGATAAATTCTATA+TGG 0.375938 2_3:+35461771 Msa0289220:three_prime_UTR
ATAAGTTATTGTTGCGCAAC+AGG 0.376055 2_3:+35461251 Msa0289220:CDS
CTTGACAGGGCCGCGATTTG+AGG 0.381522 2_3:+35461163 Msa0289220:CDS
GTGTAGAGTGAAACAATTAA+AGG 0.386843 2_3:+35461991 Msa0289220:three_prime_UTR
TGTTGCGCAACAGGCTTGTT+GGG 0.389869 2_3:+35461260 Msa0289220:CDS
TCTGAAGGTAACAAAAGTTC+AGG 0.392103 2_3:-35460542 None:intergenic
TGCATTAGACAGTGTATTCC+AGG 0.402474 2_3:-35460513 None:intergenic
GGCAGTGTTGTTCCGTTGAA+TGG 0.404727 2_3:-35459949 None:intergenic
CCAACTCCCACACCTGGAAT+TGG 0.406541 2_3:-35459807 None:intergenic
TAGTGAATAATTCAAATCCT+TGG 0.413378 2_3:+35462110 Msa0289220:three_prime_UTR
TGCCTTGGAACTATGTTTAA+CGG 0.418040 2_3:+35459968 Msa0289220:CDS
AGGTTTCTGATGCCCTTGAC+AGG 0.426561 2_3:+35461149 Msa0289220:intron
TGCAGAGGAGGACCAATTCC+AGG 0.427136 2_3:+35459795 Msa0289220:CDS
GTGACATCTGTATTCCTTGA+TGG 0.433176 2_3:+35461664 Msa0289220:three_prime_UTR
TTGTTGCGCAACAGGCTTGT+TGG 0.433583 2_3:+35461259 Msa0289220:CDS
ATTCCATTCGACTTGCCACC+TGG 0.439426 2_3:+35460495 Msa0289220:CDS
TATTCCTTGATGGAATGATA+TGG 0.442697 2_3:+35461674 Msa0289220:three_prime_UTR
AGTGAATAATTCAAATCCTT+GGG 0.466319 2_3:+35462111 Msa0289220:three_prime_UTR
GGAGGGGTAAAGAAGCCTTT+AGG 0.470941 2_3:+35460096 Msa0289220:CDS
CTATGTTTAACGGCAGGACC+TGG 0.475194 2_3:+35459978 Msa0289220:CDS
GTTGTTATAGAGAGACCATT+GGG 0.482895 2_3:+35460008 Msa0289220:CDS
CTCAAATCGCGGCCCTGTCA+AGG 0.484116 2_3:-35461162 None:intergenic
TCTGCATAACATCAATTCAA+TGG 0.493057 2_3:-35459778 None:intergenic
CACACATTGCTGCGACCTAA+AGG 0.500386 2_3:-35460111 None:intergenic
CAGGTATGAAATATGAATGA+TGG 0.502337 2_3:-35461220 None:intergenic
TAAATATAATGAAACTTGCC+AGG 0.506774 2_3:-35460458 None:intergenic
CTCTCTTTGAGAGATTATGC+TGG 0.521446 2_3:+35461284 Msa0289220:CDS
TCAACGGAACAACACTGCCT+TGG 0.522841 2_3:+35459953 Msa0289220:CDS
ATTGCATCACAAAATCTTGA+CGG 0.529455 2_3:-35461697 None:intergenic
GAAGTATTTGTACAAAATCA+GGG 0.529854 2_3:+35460264 Msa0289220:CDS
GTTGTTCCGTTGAATGGTAT+AGG 0.530174 2_3:-35459943 None:intergenic
AATGGCTTATATAATCATGA+TGG 0.530269 2_3:+35461947 Msa0289220:three_prime_UTR
ACGTACTGACTGGAGGGTAG+TGG 0.532760 2_3:+35461638 Msa0289220:three_prime_UTR
AAATTCCTCTCTTCTGGCAC+AGG 0.533778 2_3:+35461533 Msa0289220:CDS
ATTTGTTTAAACGTACTGAC+TGG 0.538560 2_3:+35461628 Msa0289220:three_prime_UTR
GGTTGTTATAGAGAGACCAT+TGG 0.546544 2_3:+35460007 Msa0289220:CDS
GGCACAGGTGAACAAGTTGA+AGG 0.548409 2_3:+35461548 Msa0289220:CDS
TATGTTTAACGGCAGGACCT+GGG 0.549650 2_3:+35459979 Msa0289220:CDS
TTGGAACTATGTTTAACGGC+AGG 0.552638 2_3:+35459972 Msa0289220:CDS
CCCGAAAAGCATTTCTCTGA+AGG 0.552673 2_3:-35460557 None:intergenic
CGCAACAATAACTTATCCAC+AGG 0.553250 2_3:-35461244 None:intergenic
TAGTAGGTGTTATCTGCCCA+AGG 0.558616 2_3:-35462127 None:intergenic
TCTCTTTGAGAGATTATGCT+GGG 0.563044 2_3:+35461285 Msa0289220:CDS
CAAGCAATCAACATCTGACA+TGG 0.564410 2_3:+35461461 Msa0289220:CDS
TCAAATCGCGGCCCTGTCAA+GGG 0.565264 2_3:-35461161 None:intergenic
CATGGATGAAAAGAGTTGGT+TGG 0.567021 2_3:+35461479 Msa0289220:CDS
ATTCCAGGTGGCAAGTCGAA+TGG 0.569750 2_3:-35460498 None:intergenic
CGTACTGACTGGAGGGTAGT+GGG 0.572190 2_3:+35461639 Msa0289220:three_prime_UTR
GGAGTTGAAAGAATTGATTG+AGG 0.579313 2_3:+35461500 Msa0289220:CDS
GGTTTCTGATGCCCTTGACA+GGG 0.580132 2_3:+35461150 Msa0289220:intron
CAATAACTTATCCACAGGAC+AGG 0.581405 2_3:-35461239 None:intergenic
TTTATTAGTACGTCTATCGA+CGG 0.590374 2_3:+35461744 Msa0289220:three_prime_UTR
TTATTAGTACGTCTATCGAC+GGG 0.590685 2_3:+35461745 Msa0289220:three_prime_UTR
TCTATAACAACCATATCCCC+AGG 0.591618 2_3:-35459996 None:intergenic
AAATGATTCCATAGCTACAC+GGG 0.597241 2_3:+35461820 Msa0289220:three_prime_UTR
GAATTGATTGAGGCATGTGA+TGG 0.598135 2_3:+35461510 Msa0289220:CDS
TCATGATGGATATTTGTACA+TGG 0.599230 2_3:+35461961 Msa0289220:three_prime_UTR
CAGATGTTGATTGCTTGCTA+TGG 0.601126 2_3:-35461455 None:intergenic
GAATTGATGTTATGCAGAGG+AGG 0.602718 2_3:+35459783 Msa0289220:CDS
TGCCGTTAAACATAGTTCCA+AGG 0.606781 2_3:-35459970 None:intergenic
TGTCTTCAACTTCTTCAGTG+TGG 0.611666 2_3:+35459742 Msa0289220:CDS
CATATTTCATACCTGTCCTG+TGG 0.618580 2_3:+35461228 Msa0289220:CDS
TATGAAATATGAATGATGGA+AGG 0.618796 2_3:-35461216 None:intergenic
TGTTTAAACGTACTGACTGG+AGG 0.621407 2_3:+35461631 Msa0289220:three_prime_UTR
GTTTAAACGTACTGACTGGA+GGG 0.621831 2_3:+35461632 Msa0289220:three_prime_UTR
ATGTTTAACGGCAGGACCTG+GGG 0.629545 2_3:+35459980 Msa0289220:CDS
GTTCACCTGTGCCAGAAGAG+AGG 0.629884 2_3:-35461538 None:intergenic
ACGGCCATATCATTCCATCA+AGG 0.632803 2_3:-35461678 None:intergenic
GAAATGATTCCATAGCTACA+CGG 0.633912 2_3:+35461819 Msa0289220:three_prime_UTR
AGACGACCTATACCATTCAA+CGG 0.636788 2_3:+35459937 Msa0289220:CDS
AGGATACCTTGAACCTGCAG+AGG 0.638345 2_3:+35460586 Msa0289220:CDS
CAAATACTTCAATTCCAACA+AGG 0.642031 2_3:-35460251 None:intergenic
TGCAAATGATCCTCAAATCG+CGG 0.643658 2_3:-35461173 None:intergenic
CTGACATGGATGAAAAGAGT+TGG 0.644103 2_3:+35461475 Msa0289220:CDS
TGCTGGGAAACAGCAACATG+AGG 0.645299 2_3:+35461301 Msa0289220:CDS
ACATGGAACAATAAACCCAA+TGG 0.645346 2_3:-35460023 None:intergenic
ATTGAATTGATGTTATGCAG+AGG 0.645749 2_3:+35459780 Msa0289220:CDS
TATTTGTACAAAATCAGGGT+GGG 0.645769 2_3:+35460268 Msa0289220:CDS
AGTACTTCAAAACAGAGACA+TGG 0.650829 2_3:-35460040 None:intergenic
ATATGAATGATGGAAGGCGA+TGG 0.651810 2_3:-35461210 None:intergenic
TGAGAAAATTCTGTGTACAG+AGG 0.700326 2_3:-35460067 None:intergenic
ATTAGACAGTGTATTCCAGG+TGG 0.740325 2_3:-35460510 None:intergenic
GTATTTGTACAAAATCAGGG+TGG 0.744705 2_3:+35460267 Msa0289220:CDS
TCGAATGGAATTCAACACAG+CGG 0.801275 2_3:-35460483 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCAAAATAATTTGTTTATTT+TGG - chr2_3:35460352-35460371 None:intergenic 15.0%
!!! CCAAAATAAACAAATTATTT+TGG + chr2_3:35460349-35460368 Msa0289220:intron 15.0%
!! TATATACTTAATTGAGAATA+TGG + chr2_3:35460731-35460750 Msa0289220:intron 15.0%
!! ATATACTTAATTGAGAATAT+GGG + chr2_3:35460732-35460751 Msa0289220:intron 15.0%
!! AAAAAATTGGTAAAAGTTAT+TGG + chr2_3:35460830-35460849 Msa0289220:intron 15.0%
!!! CTTATTTTATAGATAATGTT+AGG + chr2_3:35461021-35461040 Msa0289220:intron 15.0%
!! ATTAGATGATAAATTCTATA+TGG + chr2_3:35461771-35461790 Msa0289220:three_prime_UTR 15.0%
!!! TTTAATCATTGATTTGTTAT+TGG + chr2_3:35461920-35461939 Msa0289220:three_prime_UTR 15.0%
!! ACAATTAAAGGTTATTAAAA+AGG + chr2_3:35462003-35462022 Msa0289220:three_prime_UTR 15.0%
!!! CCAAAATAATTTGTTTATTT+TGG - chr2_3:35460352-35460371 None:intergenic 15.0%
!!! CCAAAATAAACAAATTATTT+TGG + chr2_3:35460349-35460368 Msa0289220:intron 15.0%
!! TATATACTTAATTGAGAATA+TGG + chr2_3:35460731-35460750 Msa0289220:intron 15.0%
!! ATATACTTAATTGAGAATAT+GGG + chr2_3:35460732-35460751 Msa0289220:intron 15.0%
!! AAAAAATTGGTAAAAGTTAT+TGG + chr2_3:35460830-35460849 Msa0289220:intron 15.0%
!!! CTTATTTTATAGATAATGTT+AGG + chr2_3:35461021-35461040 Msa0289220:intron 15.0%
!! ATTAGATGATAAATTCTATA+TGG + chr2_3:35461771-35461790 Msa0289220:three_prime_UTR 15.0%
!!! TTTAATCATTGATTTGTTAT+TGG + chr2_3:35461920-35461939 Msa0289220:three_prime_UTR 15.0%
!! ACAATTAAAGGTTATTAAAA+AGG + chr2_3:35462003-35462022 Msa0289220:three_prime_UTR 15.0%
!! TTCAAAAACTTAAAGTAAGT+AGG - chr2_3:35459904-35459923 None:intergenic 20.0%
!!! AAATTCTTTAAAGCGTTAAA+AGG + chr2_3:35460855-35460874 Msa0289220:intron 20.0%
!!! ATTTTATAGATAATGTTAGG+TGG + chr2_3:35461024-35461043 Msa0289220:intron 20.0%
!!! TTTTATAGATAATGTTAGGT+GGG + chr2_3:35461025-35461044 Msa0289220:intron 20.0%
!! TCAACATAATCAATATTGTT+TGG - chr2_3:35461080-35461099 None:intergenic 20.0%
!!! TGTATCTTATTTGTTCTTAT+TGG + chr2_3:35461380-35461399 Msa0289220:intron 20.0%
!!! TGATTTGTTATTGGTAAAAA+TGG + chr2_3:35461929-35461948 Msa0289220:three_prime_UTR 20.0%
!! TTCAAAAACTTAAAGTAAGT+AGG - chr2_3:35459904-35459923 None:intergenic 20.0%
!!! AAATTCTTTAAAGCGTTAAA+AGG + chr2_3:35460855-35460874 Msa0289220:intron 20.0%
!!! ATTTTATAGATAATGTTAGG+TGG + chr2_3:35461024-35461043 Msa0289220:intron 20.0%
!!! TTTTATAGATAATGTTAGGT+GGG + chr2_3:35461025-35461044 Msa0289220:intron 20.0%
!! TCAACATAATCAATATTGTT+TGG - chr2_3:35461080-35461099 None:intergenic 20.0%
!!! TGTATCTTATTTGTTCTTAT+TGG + chr2_3:35461380-35461399 Msa0289220:intron 20.0%
!!! TGATTTGTTATTGGTAAAAA+TGG + chr2_3:35461929-35461948 Msa0289220:three_prime_UTR 20.0%
!! TGATAATGCTAAATAGGAAA+AGG - chr2_3:35460196-35460215 None:intergenic 25.0%
!! TGTCAATGATAATGCTAAAT+AGG - chr2_3:35460202-35460221 None:intergenic 25.0%
! ATTTAGCATTATCATTGACA+TGG + chr2_3:35460202-35460221 Msa0289220:intron 25.0%
!! TGAAGTATTTGTACAAAATC+AGG + chr2_3:35460263-35460282 Msa0289220:CDS 25.0%
!! GAAGTATTTGTACAAAATCA+GGG + chr2_3:35460264-35460283 Msa0289220:CDS 25.0%
! TAAATATAATGAAACTTGCC+AGG - chr2_3:35460461-35460480 None:intergenic 25.0%
! GCATAAGAAATATTCTATGT+AGG - chr2_3:35460654-35460673 None:intergenic 25.0%
! CTTGAATCAAAGCAAAAAAT+TGG + chr2_3:35460817-35460836 Msa0289220:intron 25.0%
! ATCTAACTAAGAGATACTAA+AGG - chr2_3:35460905-35460924 None:intergenic 25.0%
! TTTATAGATAATGTTAGGTG+GGG + chr2_3:35461026-35461045 Msa0289220:intron 25.0%
!! TATGAAATATGAATGATGGA+AGG - chr2_3:35461219-35461238 None:intergenic 25.0%
!! TTTCTTTTTGCGAAATAGTA+TGG - chr2_3:35461803-35461822 None:intergenic 25.0%
! AATGGCTTATATAATCATGA+TGG + chr2_3:35461947-35461966 Msa0289220:three_prime_UTR 25.0%
!! TTGCTACTCTAAAAAAAACT+CGG - chr2_3:35462085-35462104 None:intergenic 25.0%
! TAGTGAATAATTCAAATCCT+TGG + chr2_3:35462110-35462129 Msa0289220:three_prime_UTR 25.0%
! AGTGAATAATTCAAATCCTT+GGG + chr2_3:35462111-35462130 Msa0289220:three_prime_UTR 25.0%
!! TGATAATGCTAAATAGGAAA+AGG - chr2_3:35460196-35460215 None:intergenic 25.0%
!! TGTCAATGATAATGCTAAAT+AGG - chr2_3:35460202-35460221 None:intergenic 25.0%
! ATTTAGCATTATCATTGACA+TGG + chr2_3:35460202-35460221 Msa0289220:intron 25.0%
!! TGAAGTATTTGTACAAAATC+AGG + chr2_3:35460263-35460282 Msa0289220:CDS 25.0%
!! GAAGTATTTGTACAAAATCA+GGG + chr2_3:35460264-35460283 Msa0289220:CDS 25.0%
! TAAATATAATGAAACTTGCC+AGG - chr2_3:35460461-35460480 None:intergenic 25.0%
! GCATAAGAAATATTCTATGT+AGG - chr2_3:35460654-35460673 None:intergenic 25.0%
! CTTGAATCAAAGCAAAAAAT+TGG + chr2_3:35460817-35460836 Msa0289220:intron 25.0%
! ATCTAACTAAGAGATACTAA+AGG - chr2_3:35460905-35460924 None:intergenic 25.0%
! TTTATAGATAATGTTAGGTG+GGG + chr2_3:35461026-35461045 Msa0289220:intron 25.0%
!! TATGAAATATGAATGATGGA+AGG - chr2_3:35461219-35461238 None:intergenic 25.0%
!! TTTCTTTTTGCGAAATAGTA+TGG - chr2_3:35461803-35461822 None:intergenic 25.0%
! AATGGCTTATATAATCATGA+TGG + chr2_3:35461947-35461966 Msa0289220:three_prime_UTR 25.0%
!! TTGCTACTCTAAAAAAAACT+CGG - chr2_3:35462085-35462104 None:intergenic 25.0%
! TAGTGAATAATTCAAATCCT+TGG + chr2_3:35462110-35462129 Msa0289220:three_prime_UTR 25.0%
! AGTGAATAATTCAAATCCTT+GGG + chr2_3:35462111-35462130 Msa0289220:three_prime_UTR 25.0%
TCTGCATAACATCAATTCAA+TGG - chr2_3:35459781-35459800 None:intergenic 30.0%
ATTGAATTGATGTTATGCAG+AGG + chr2_3:35459780-35459799 Msa0289220:CDS 30.0%
AAATCTTGCATCTGTTTGAA+AGG - chr2_3:35459877-35459896 None:intergenic 30.0%
!!! TGTGGACTTTTCTTTGTTTT+AGG + chr2_3:35460130-35460149 Msa0289220:intron 30.0%
! GAAACAATGTCCAATTTTCA+AGG + chr2_3:35460157-35460176 Msa0289220:intron 30.0%
!! TTATCTATCGATTTCCTTGT+TGG + chr2_3:35460237-35460256 Msa0289220:CDS 30.0%
CAAATACTTCAATTCCAACA+AGG - chr2_3:35460254-35460273 None:intergenic 30.0%
TATTTGTACAAAATCAGGGT+GGG + chr2_3:35460268-35460287 Msa0289220:CDS 30.0%
! TAATTATGTTTTACCTCTGC+AGG - chr2_3:35460602-35460621 None:intergenic 30.0%
TCTTAGTTAGATTTAGCTGT+TGG + chr2_3:35460913-35460932 Msa0289220:intron 30.0%
CTTAGTTAGATTTAGCTGTT+GGG + chr2_3:35460914-35460933 Msa0289220:intron 30.0%
!! ATGAACTTGAAGAGTATTCA+AGG + chr2_3:35460950-35460969 Msa0289220:intron 30.0%
! GCAGGATAATGAAGATATTT+TGG + chr2_3:35461108-35461127 Msa0289220:intron 30.0%
!! GGATAATGAAGATATTTTGG+AGG + chr2_3:35461111-35461130 Msa0289220:intron 30.0%
CAGGTATGAAATATGAATGA+TGG - chr2_3:35461223-35461242 None:intergenic 30.0%
! ATTTGTTTAAACGTACTGAC+TGG + chr2_3:35461628-35461647 Msa0289220:three_prime_UTR 30.0%
TATTCCTTGATGGAATGATA+TGG + chr2_3:35461674-35461693 Msa0289220:three_prime_UTR 30.0%
ATTGCATCACAAAATCTTGA+CGG - chr2_3:35461700-35461719 None:intergenic 30.0%
TTTATTAGTACGTCTATCGA+CGG + chr2_3:35461744-35461763 Msa0289220:three_prime_UTR 30.0%
!! TCATGATGGATATTTGTACA+TGG + chr2_3:35461961-35461980 Msa0289220:three_prime_UTR 30.0%
GTGTAGAGTGAAACAATTAA+AGG + chr2_3:35461991-35462010 Msa0289220:three_prime_UTR 30.0%
TCTGCATAACATCAATTCAA+TGG - chr2_3:35459781-35459800 None:intergenic 30.0%
ATTGAATTGATGTTATGCAG+AGG + chr2_3:35459780-35459799 Msa0289220:CDS 30.0%
AAATCTTGCATCTGTTTGAA+AGG - chr2_3:35459877-35459896 None:intergenic 30.0%
!!! TGTGGACTTTTCTTTGTTTT+AGG + chr2_3:35460130-35460149 Msa0289220:intron 30.0%
! GAAACAATGTCCAATTTTCA+AGG + chr2_3:35460157-35460176 Msa0289220:intron 30.0%
!! TTATCTATCGATTTCCTTGT+TGG + chr2_3:35460237-35460256 Msa0289220:CDS 30.0%
CAAATACTTCAATTCCAACA+AGG - chr2_3:35460254-35460273 None:intergenic 30.0%
TATTTGTACAAAATCAGGGT+GGG + chr2_3:35460268-35460287 Msa0289220:CDS 30.0%
! TAATTATGTTTTACCTCTGC+AGG - chr2_3:35460602-35460621 None:intergenic 30.0%
TCTTAGTTAGATTTAGCTGT+TGG + chr2_3:35460913-35460932 Msa0289220:intron 30.0%
CTTAGTTAGATTTAGCTGTT+GGG + chr2_3:35460914-35460933 Msa0289220:intron 30.0%
!! ATGAACTTGAAGAGTATTCA+AGG + chr2_3:35460950-35460969 Msa0289220:intron 30.0%
! GCAGGATAATGAAGATATTT+TGG + chr2_3:35461108-35461127 Msa0289220:intron 30.0%
!! GGATAATGAAGATATTTTGG+AGG + chr2_3:35461111-35461130 Msa0289220:intron 30.0%
CAGGTATGAAATATGAATGA+TGG - chr2_3:35461223-35461242 None:intergenic 30.0%
! ATTTGTTTAAACGTACTGAC+TGG + chr2_3:35461628-35461647 Msa0289220:three_prime_UTR 30.0%
TATTCCTTGATGGAATGATA+TGG + chr2_3:35461674-35461693 Msa0289220:three_prime_UTR 30.0%
ATTGCATCACAAAATCTTGA+CGG - chr2_3:35461700-35461719 None:intergenic 30.0%
TTTATTAGTACGTCTATCGA+CGG + chr2_3:35461744-35461763 Msa0289220:three_prime_UTR 30.0%
!! TCATGATGGATATTTGTACA+TGG + chr2_3:35461961-35461980 Msa0289220:three_prime_UTR 30.0%
GTGTAGAGTGAAACAATTAA+AGG + chr2_3:35461991-35462010 Msa0289220:three_prime_UTR 30.0%
TGCCTTGGAACTATGTTTAA+CGG + chr2_3:35459968-35459987 Msa0289220:CDS 35.0%
GTTGTTATAGAGAGACCATT+GGG + chr2_3:35460008-35460027 Msa0289220:CDS 35.0%
ACATGGAACAATAAACCCAA+TGG - chr2_3:35460026-35460045 None:intergenic 35.0%
AGTACTTCAAAACAGAGACA+TGG - chr2_3:35460043-35460062 None:intergenic 35.0%
TGAGAAAATTCTGTGTACAG+AGG - chr2_3:35460070-35460089 None:intergenic 35.0%
GTTGTCAGTTCCTTGAAAAT+TGG - chr2_3:35460170-35460189 None:intergenic 35.0%
GTATTTGTACAAAATCAGGG+TGG + chr2_3:35460267-35460286 Msa0289220:CDS 35.0%
!!! GGATACTTTTGAAGCTTTAC+AGG + chr2_3:35460289-35460308 Msa0289220:CDS 35.0%
GAAGCTTTACAGGATCTTTA+TGG + chr2_3:35460299-35460318 Msa0289220:CDS 35.0%
TCTGAAGGTAACAAAAGTTC+AGG - chr2_3:35460545-35460564 None:intergenic 35.0%
! ACCTTCAGAGAAATGCTTTT+CGG + chr2_3:35460556-35460575 Msa0289220:CDS 35.0%
!! AAAAAGCATCTACTGTACTC+TGG - chr2_3:35460795-35460814 None:intergenic 35.0%
!! ACTTGAAGAGTATTCAAGGA+TGG + chr2_3:35460954-35460973 Msa0289220:intron 35.0%
!! CTTGAAGAGTATTCAAGGAT+GGG + chr2_3:35460955-35460974 Msa0289220:intron 35.0%
!! TTGAAGAGTATTCAAGGATG+GGG + chr2_3:35460956-35460975 Msa0289220:intron 35.0%
TGTTTGGTACAACTACGTTA+GGG - chr2_3:35461064-35461083 None:intergenic 35.0%
TTGTTTGGTACAACTACGTT+AGG - chr2_3:35461065-35461084 None:intergenic 35.0%
ATATCTTCATTATCCTGCAG+TGG - chr2_3:35461106-35461125 None:intergenic 35.0%
ATAAGTTATTGTTGCGCAAC+AGG + chr2_3:35461251-35461270 Msa0289220:CDS 35.0%
! TCTCTTTGAGAGATTATGCT+GGG + chr2_3:35461285-35461304 Msa0289220:CDS 35.0%
! TTTTGAATGCTTTTCCCTGA+TGG + chr2_3:35461332-35461351 Msa0289220:intron 35.0%
!!! TTTTCCCTGATGGATTAAGA+TGG + chr2_3:35461342-35461361 Msa0289220:intron 35.0%
TCTTCCATCTTAATCCATCA+GGG - chr2_3:35461349-35461368 None:intergenic 35.0%
ATCTTCCATCTTAATCCATC+AGG - chr2_3:35461350-35461369 None:intergenic 35.0%
ACTGATCCAATTTGTGTTAC+AGG + chr2_3:35461410-35461429 Msa0289220:intron 35.0%
CTGATCCAATTTGTGTTACA+GGG + chr2_3:35461411-35461430 Msa0289220:intron 35.0%
ACATTCCCTGTAACACAAAT+TGG - chr2_3:35461419-35461438 None:intergenic 35.0%
GGAGTTGAAAGAATTGATTG+AGG + chr2_3:35461500-35461519 Msa0289220:CDS 35.0%
! AAGATTTTGTGATGCAATGC+TGG + chr2_3:35461702-35461721 Msa0289220:three_prime_UTR 35.0%
TTATTAGTACGTCTATCGAC+GGG + chr2_3:35461745-35461764 Msa0289220:three_prime_UTR 35.0%
GAAATGATTCCATAGCTACA+CGG + chr2_3:35461819-35461838 Msa0289220:three_prime_UTR 35.0%
AAATGATTCCATAGCTACAC+GGG + chr2_3:35461820-35461839 Msa0289220:three_prime_UTR 35.0%
TGCCTTGGAACTATGTTTAA+CGG + chr2_3:35459968-35459987 Msa0289220:CDS 35.0%
GTTGTTATAGAGAGACCATT+GGG + chr2_3:35460008-35460027 Msa0289220:CDS 35.0%
ACATGGAACAATAAACCCAA+TGG - chr2_3:35460026-35460045 None:intergenic 35.0%
AGTACTTCAAAACAGAGACA+TGG - chr2_3:35460043-35460062 None:intergenic 35.0%
TGAGAAAATTCTGTGTACAG+AGG - chr2_3:35460070-35460089 None:intergenic 35.0%
GTTGTCAGTTCCTTGAAAAT+TGG - chr2_3:35460170-35460189 None:intergenic 35.0%
GTATTTGTACAAAATCAGGG+TGG + chr2_3:35460267-35460286 Msa0289220:CDS 35.0%
!!! GGATACTTTTGAAGCTTTAC+AGG + chr2_3:35460289-35460308 Msa0289220:CDS 35.0%
GAAGCTTTACAGGATCTTTA+TGG + chr2_3:35460299-35460318 Msa0289220:CDS 35.0%
TCTGAAGGTAACAAAAGTTC+AGG - chr2_3:35460545-35460564 None:intergenic 35.0%
! ACCTTCAGAGAAATGCTTTT+CGG + chr2_3:35460556-35460575 Msa0289220:CDS 35.0%
!! AAAAAGCATCTACTGTACTC+TGG - chr2_3:35460795-35460814 None:intergenic 35.0%
!! ACTTGAAGAGTATTCAAGGA+TGG + chr2_3:35460954-35460973 Msa0289220:intron 35.0%
!! CTTGAAGAGTATTCAAGGAT+GGG + chr2_3:35460955-35460974 Msa0289220:intron 35.0%
!! TTGAAGAGTATTCAAGGATG+GGG + chr2_3:35460956-35460975 Msa0289220:intron 35.0%
TGTTTGGTACAACTACGTTA+GGG - chr2_3:35461064-35461083 None:intergenic 35.0%
TTGTTTGGTACAACTACGTT+AGG - chr2_3:35461065-35461084 None:intergenic 35.0%
ATATCTTCATTATCCTGCAG+TGG - chr2_3:35461106-35461125 None:intergenic 35.0%
ATAAGTTATTGTTGCGCAAC+AGG + chr2_3:35461251-35461270 Msa0289220:CDS 35.0%
! TCTCTTTGAGAGATTATGCT+GGG + chr2_3:35461285-35461304 Msa0289220:CDS 35.0%
! TTTTGAATGCTTTTCCCTGA+TGG + chr2_3:35461332-35461351 Msa0289220:intron 35.0%
!!! TTTTCCCTGATGGATTAAGA+TGG + chr2_3:35461342-35461361 Msa0289220:intron 35.0%
TCTTCCATCTTAATCCATCA+GGG - chr2_3:35461349-35461368 None:intergenic 35.0%
ATCTTCCATCTTAATCCATC+AGG - chr2_3:35461350-35461369 None:intergenic 35.0%
ACTGATCCAATTTGTGTTAC+AGG + chr2_3:35461410-35461429 Msa0289220:intron 35.0%
CTGATCCAATTTGTGTTACA+GGG + chr2_3:35461411-35461430 Msa0289220:intron 35.0%
ACATTCCCTGTAACACAAAT+TGG - chr2_3:35461419-35461438 None:intergenic 35.0%
GGAGTTGAAAGAATTGATTG+AGG + chr2_3:35461500-35461519 Msa0289220:CDS 35.0%
! AAGATTTTGTGATGCAATGC+TGG + chr2_3:35461702-35461721 Msa0289220:three_prime_UTR 35.0%
TTATTAGTACGTCTATCGAC+GGG + chr2_3:35461745-35461764 Msa0289220:three_prime_UTR 35.0%
GAAATGATTCCATAGCTACA+CGG + chr2_3:35461819-35461838 Msa0289220:three_prime_UTR 35.0%
AAATGATTCCATAGCTACAC+GGG + chr2_3:35461820-35461839 Msa0289220:three_prime_UTR 35.0%
TGTCTTCAACTTCTTCAGTG+TGG + chr2_3:35459742-35459761 Msa0289220:CDS 40.0%
GAATTGATGTTATGCAGAGG+AGG + chr2_3:35459783-35459802 Msa0289220:CDS 40.0%
AGACGACCTATACCATTCAA+CGG + chr2_3:35459937-35459956 Msa0289220:CDS 40.0%
GTTGTTCCGTTGAATGGTAT+AGG - chr2_3:35459946-35459965 None:intergenic 40.0%
TGCCGTTAAACATAGTTCCA+AGG - chr2_3:35459973-35459992 None:intergenic 40.0%
TTGGAACTATGTTTAACGGC+AGG + chr2_3:35459972-35459991 Msa0289220:CDS 40.0%
TCTATAACAACCATATCCCC+AGG - chr2_3:35459999-35460018 None:intergenic 40.0%
GGTTGTTATAGAGAGACCAT+TGG + chr2_3:35460007-35460026 Msa0289220:CDS 40.0%
! CACAGAATTTTCTCAGTAGC+TGG + chr2_3:35460075-35460094 Msa0289220:CDS 40.0%
! AGAATTTTCTCAGTAGCTGG+AGG + chr2_3:35460078-35460097 Msa0289220:CDS 40.0%
! GAATTTTCTCAGTAGCTGGA+GGG + chr2_3:35460079-35460098 Msa0289220:CDS 40.0%
! AATTTTCTCAGTAGCTGGAG+GGG + chr2_3:35460080-35460099 Msa0289220:CDS 40.0%
TTTATGGTGAGCTTCTCGAT+AGG + chr2_3:35460315-35460334 Msa0289220:intron 40.0%
TTATGGTGAGCTTCTCGATA+GGG + chr2_3:35460316-35460335 Msa0289220:intron 40.0%
TCGAATGGAATTCAACACAG+CGG - chr2_3:35460486-35460505 None:intergenic 40.0%
ATTAGACAGTGTATTCCAGG+TGG - chr2_3:35460513-35460532 None:intergenic 40.0%
TGCATTAGACAGTGTATTCC+AGG - chr2_3:35460516-35460535 None:intergenic 40.0%
! CCTTCAGAGAAATGCTTTTC+GGG + chr2_3:35460557-35460576 Msa0289220:CDS 40.0%
!! ATTATGTTGACTTCCACTGC+AGG + chr2_3:35461090-35461109 Msa0289220:intron 40.0%
GGAGGTTTATGTCAAGTCAT+AGG + chr2_3:35461129-35461148 Msa0289220:intron 40.0%
TGCAAATGATCCTCAAATCG+CGG - chr2_3:35461176-35461195 None:intergenic 40.0%
! ATATGAATGATGGAAGGCGA+TGG - chr2_3:35461213-35461232 None:intergenic 40.0%
CATATTTCATACCTGTCCTG+TGG + chr2_3:35461228-35461247 Msa0289220:CDS 40.0%
CAATAACTTATCCACAGGAC+AGG - chr2_3:35461242-35461261 None:intergenic 40.0%
CGCAACAATAACTTATCCAC+AGG - chr2_3:35461247-35461266 None:intergenic 40.0%
! CTCTCTTTGAGAGATTATGC+TGG + chr2_3:35461284-35461303 Msa0289220:CDS 40.0%
! CAGATGTTGATTGCTTGCTA+TGG - chr2_3:35461458-35461477 None:intergenic 40.0%
CAAGCAATCAACATCTGACA+TGG + chr2_3:35461461-35461480 Msa0289220:CDS 40.0%
CTGACATGGATGAAAAGAGT+TGG + chr2_3:35461475-35461494 Msa0289220:CDS 40.0%
! CATGGATGAAAAGAGTTGGT+TGG + chr2_3:35461479-35461498 Msa0289220:CDS 40.0%
GAATTGATTGAGGCATGTGA+TGG + chr2_3:35461510-35461529 Msa0289220:CDS 40.0%
TGATGGAAATTCCTCTCTTC+TGG + chr2_3:35461527-35461546 Msa0289220:CDS 40.0%
!! TGTTTAAACGTACTGACTGG+AGG + chr2_3:35461631-35461650 Msa0289220:three_prime_UTR 40.0%
!! GTTTAAACGTACTGACTGGA+GGG + chr2_3:35461632-35461651 Msa0289220:three_prime_UTR 40.0%
GTGACATCTGTATTCCTTGA+TGG + chr2_3:35461664-35461683 Msa0289220:three_prime_UTR 40.0%
!!! ATTTTTTGCCCGTGTAGCTA+TGG - chr2_3:35461831-35461850 None:intergenic 40.0%
TGTCTTCAACTTCTTCAGTG+TGG + chr2_3:35459742-35459761 Msa0289220:CDS 40.0%
GAATTGATGTTATGCAGAGG+AGG + chr2_3:35459783-35459802 Msa0289220:CDS 40.0%
AGACGACCTATACCATTCAA+CGG + chr2_3:35459937-35459956 Msa0289220:CDS 40.0%
GTTGTTCCGTTGAATGGTAT+AGG - chr2_3:35459946-35459965 None:intergenic 40.0%
TGCCGTTAAACATAGTTCCA+AGG - chr2_3:35459973-35459992 None:intergenic 40.0%
TTGGAACTATGTTTAACGGC+AGG + chr2_3:35459972-35459991 Msa0289220:CDS 40.0%
TCTATAACAACCATATCCCC+AGG - chr2_3:35459999-35460018 None:intergenic 40.0%
GGTTGTTATAGAGAGACCAT+TGG + chr2_3:35460007-35460026 Msa0289220:CDS 40.0%
! CACAGAATTTTCTCAGTAGC+TGG + chr2_3:35460075-35460094 Msa0289220:CDS 40.0%
! AGAATTTTCTCAGTAGCTGG+AGG + chr2_3:35460078-35460097 Msa0289220:CDS 40.0%
! GAATTTTCTCAGTAGCTGGA+GGG + chr2_3:35460079-35460098 Msa0289220:CDS 40.0%
! AATTTTCTCAGTAGCTGGAG+GGG + chr2_3:35460080-35460099 Msa0289220:CDS 40.0%
TTTATGGTGAGCTTCTCGAT+AGG + chr2_3:35460315-35460334 Msa0289220:intron 40.0%
TTATGGTGAGCTTCTCGATA+GGG + chr2_3:35460316-35460335 Msa0289220:intron 40.0%
TCGAATGGAATTCAACACAG+CGG - chr2_3:35460486-35460505 None:intergenic 40.0%
ATTAGACAGTGTATTCCAGG+TGG - chr2_3:35460513-35460532 None:intergenic 40.0%
TGCATTAGACAGTGTATTCC+AGG - chr2_3:35460516-35460535 None:intergenic 40.0%
! CCTTCAGAGAAATGCTTTTC+GGG + chr2_3:35460557-35460576 Msa0289220:CDS 40.0%
!! ATTATGTTGACTTCCACTGC+AGG + chr2_3:35461090-35461109 Msa0289220:intron 40.0%
GGAGGTTTATGTCAAGTCAT+AGG + chr2_3:35461129-35461148 Msa0289220:intron 40.0%
TGCAAATGATCCTCAAATCG+CGG - chr2_3:35461176-35461195 None:intergenic 40.0%
! ATATGAATGATGGAAGGCGA+TGG - chr2_3:35461213-35461232 None:intergenic 40.0%
CATATTTCATACCTGTCCTG+TGG + chr2_3:35461228-35461247 Msa0289220:CDS 40.0%
CAATAACTTATCCACAGGAC+AGG - chr2_3:35461242-35461261 None:intergenic 40.0%
CGCAACAATAACTTATCCAC+AGG - chr2_3:35461247-35461266 None:intergenic 40.0%
! CTCTCTTTGAGAGATTATGC+TGG + chr2_3:35461284-35461303 Msa0289220:CDS 40.0%
! CAGATGTTGATTGCTTGCTA+TGG - chr2_3:35461458-35461477 None:intergenic 40.0%
CAAGCAATCAACATCTGACA+TGG + chr2_3:35461461-35461480 Msa0289220:CDS 40.0%
CTGACATGGATGAAAAGAGT+TGG + chr2_3:35461475-35461494 Msa0289220:CDS 40.0%
! CATGGATGAAAAGAGTTGGT+TGG + chr2_3:35461479-35461498 Msa0289220:CDS 40.0%
GAATTGATTGAGGCATGTGA+TGG + chr2_3:35461510-35461529 Msa0289220:CDS 40.0%
TGATGGAAATTCCTCTCTTC+TGG + chr2_3:35461527-35461546 Msa0289220:CDS 40.0%
!! TGTTTAAACGTACTGACTGG+AGG + chr2_3:35461631-35461650 Msa0289220:three_prime_UTR 40.0%
!! GTTTAAACGTACTGACTGGA+GGG + chr2_3:35461632-35461651 Msa0289220:three_prime_UTR 40.0%
GTGACATCTGTATTCCTTGA+TGG + chr2_3:35461664-35461683 Msa0289220:three_prime_UTR 40.0%
!!! ATTTTTTGCCCGTGTAGCTA+TGG - chr2_3:35461831-35461850 None:intergenic 40.0%
TTGACCAAAATCCTCTGCCA+GGG - chr2_3:35459842-35459861 None:intergenic 45.0%
TTTGACCAAAATCCTCTGCC+AGG - chr2_3:35459843-35459862 None:intergenic 45.0%
TATGTTTAACGGCAGGACCT+GGG + chr2_3:35459979-35459998 Msa0289220:CDS 45.0%
! CGATGTCAACTTCTTTTGCC+TGG + chr2_3:35460440-35460459 Msa0289220:CDS 45.0%
!! CCCGAAAAGCATTTCTCTGA+AGG - chr2_3:35460560-35460579 None:intergenic 45.0%
!! AAATGCTTTTCGGGAGCTGA+AGG + chr2_3:35460566-35460585 Msa0289220:CDS 45.0%
! GTTTTACCTCTGCAGGTTCA+AGG - chr2_3:35460595-35460614 None:intergenic 45.0%
AAATTCCTCTCTTCTGGCAC+AGG + chr2_3:35461533-35461552 Msa0289220:CDS 45.0%
ACGGCCATATCATTCCATCA+AGG - chr2_3:35461681-35461700 None:intergenic 45.0%
CTACACGGGCAAAAAATGCT+TGG + chr2_3:35461834-35461853 Msa0289220:three_prime_UTR 45.0%
! TAGTAGGTGTTATCTGCCCA+AGG - chr2_3:35462130-35462149 None:intergenic 45.0%
TTGACCAAAATCCTCTGCCA+GGG - chr2_3:35459842-35459861 None:intergenic 45.0%
TTTGACCAAAATCCTCTGCC+AGG - chr2_3:35459843-35459862 None:intergenic 45.0%
TATGTTTAACGGCAGGACCT+GGG + chr2_3:35459979-35459998 Msa0289220:CDS 45.0%
! CGATGTCAACTTCTTTTGCC+TGG + chr2_3:35460440-35460459 Msa0289220:CDS 45.0%
!! CCCGAAAAGCATTTCTCTGA+AGG - chr2_3:35460560-35460579 None:intergenic 45.0%
!! AAATGCTTTTCGGGAGCTGA+AGG + chr2_3:35460566-35460585 Msa0289220:CDS 45.0%
! GTTTTACCTCTGCAGGTTCA+AGG - chr2_3:35460595-35460614 None:intergenic 45.0%
AAATTCCTCTCTTCTGGCAC+AGG + chr2_3:35461533-35461552 Msa0289220:CDS 45.0%
ACGGCCATATCATTCCATCA+AGG - chr2_3:35461681-35461700 None:intergenic 45.0%
CTACACGGGCAAAAAATGCT+TGG + chr2_3:35461834-35461853 Msa0289220:three_prime_UTR 45.0%
! TAGTAGGTGTTATCTGCCCA+AGG - chr2_3:35462130-35462149 None:intergenic 45.0%
TGACCAAAATCCTCTGCCAG+GGG - chr2_3:35459841-35459860 None:intergenic 50.0%
! GGCAGTGTTGTTCCGTTGAA+TGG - chr2_3:35459952-35459971 None:intergenic 50.0%
TCAACGGAACAACACTGCCT+TGG + chr2_3:35459953-35459972 Msa0289220:CDS 50.0%
CTATGTTTAACGGCAGGACC+TGG + chr2_3:35459978-35459997 Msa0289220:CDS 50.0%
ATGTTTAACGGCAGGACCTG+GGG + chr2_3:35459980-35459999 Msa0289220:CDS 50.0%
GGAGGGGTAAAGAAGCCTTT+AGG + chr2_3:35460096-35460115 Msa0289220:CDS 50.0%
CACACATTGCTGCGACCTAA+AGG - chr2_3:35460114-35460133 None:intergenic 50.0%
CTTTAGGTCGCAGCAATGTG+TGG + chr2_3:35460112-35460131 Msa0289220:intron 50.0%
! ATTCCATTCGACTTGCCACC+TGG + chr2_3:35460495-35460514 Msa0289220:CDS 50.0%
ATTCCAGGTGGCAAGTCGAA+TGG - chr2_3:35460501-35460520 None:intergenic 50.0%
AGGATACCTTGAACCTGCAG+AGG + chr2_3:35460586-35460605 Msa0289220:CDS 50.0%
AGGTTTCTGATGCCCTTGAC+AGG + chr2_3:35461149-35461168 Msa0289220:intron 50.0%
GGTTTCTGATGCCCTTGACA+GGG + chr2_3:35461150-35461169 Msa0289220:intron 50.0%
TTGTTGCGCAACAGGCTTGT+TGG + chr2_3:35461259-35461278 Msa0289220:CDS 50.0%
! TGTTGCGCAACAGGCTTGTT+GGG + chr2_3:35461260-35461279 Msa0289220:CDS 50.0%
TGCTGGGAAACAGCAACATG+AGG + chr2_3:35461301-35461320 Msa0289220:CDS 50.0%
! GGCACAGGTGAACAAGTTGA+AGG + chr2_3:35461548-35461567 Msa0289220:CDS 50.0%
TGACCAAAATCCTCTGCCAG+GGG - chr2_3:35459841-35459860 None:intergenic 50.0%
! GGCAGTGTTGTTCCGTTGAA+TGG - chr2_3:35459952-35459971 None:intergenic 50.0%
TCAACGGAACAACACTGCCT+TGG + chr2_3:35459953-35459972 Msa0289220:CDS 50.0%
CTATGTTTAACGGCAGGACC+TGG + chr2_3:35459978-35459997 Msa0289220:CDS 50.0%
ATGTTTAACGGCAGGACCTG+GGG + chr2_3:35459980-35459999 Msa0289220:CDS 50.0%
GGAGGGGTAAAGAAGCCTTT+AGG + chr2_3:35460096-35460115 Msa0289220:CDS 50.0%
CACACATTGCTGCGACCTAA+AGG - chr2_3:35460114-35460133 None:intergenic 50.0%
CTTTAGGTCGCAGCAATGTG+TGG + chr2_3:35460112-35460131 Msa0289220:intron 50.0%
! ATTCCATTCGACTTGCCACC+TGG + chr2_3:35460495-35460514 Msa0289220:CDS 50.0%
ATTCCAGGTGGCAAGTCGAA+TGG - chr2_3:35460501-35460520 None:intergenic 50.0%
AGGATACCTTGAACCTGCAG+AGG + chr2_3:35460586-35460605 Msa0289220:CDS 50.0%
AGGTTTCTGATGCCCTTGAC+AGG + chr2_3:35461149-35461168 Msa0289220:intron 50.0%
GGTTTCTGATGCCCTTGACA+GGG + chr2_3:35461150-35461169 Msa0289220:intron 50.0%
TTGTTGCGCAACAGGCTTGT+TGG + chr2_3:35461259-35461278 Msa0289220:CDS 50.0%
! TGTTGCGCAACAGGCTTGTT+GGG + chr2_3:35461260-35461279 Msa0289220:CDS 50.0%
TGCTGGGAAACAGCAACATG+AGG + chr2_3:35461301-35461320 Msa0289220:CDS 50.0%
! GGCACAGGTGAACAAGTTGA+AGG + chr2_3:35461548-35461567 Msa0289220:CDS 50.0%
TGCAGAGGAGGACCAATTCC+AGG + chr2_3:35459795-35459814 Msa0289220:CDS 55.0%
AGGAGGACCAATTCCAGGTG+TGG + chr2_3:35459800-35459819 Msa0289220:intron 55.0%
GGAGGACCAATTCCAGGTGT+GGG + chr2_3:35459801-35459820 Msa0289220:intron 55.0%
CCAACTCCCACACCTGGAAT+TGG - chr2_3:35459810-35459829 None:intergenic 55.0%
CCAATTCCAGGTGTGGGAGT+TGG + chr2_3:35459807-35459826 Msa0289220:intron 55.0%
TCAAATCGCGGCCCTGTCAA+GGG - chr2_3:35461164-35461183 None:intergenic 55.0%
GTTCACCTGTGCCAGAAGAG+AGG - chr2_3:35461541-35461560 None:intergenic 55.0%
!! ACGTACTGACTGGAGGGTAG+TGG + chr2_3:35461638-35461657 Msa0289220:three_prime_UTR 55.0%
!! CGTACTGACTGGAGGGTAGT+GGG + chr2_3:35461639-35461658 Msa0289220:three_prime_UTR 55.0%
TGCAGAGGAGGACCAATTCC+AGG + chr2_3:35459795-35459814 Msa0289220:CDS 55.0%
AGGAGGACCAATTCCAGGTG+TGG + chr2_3:35459800-35459819 Msa0289220:intron 55.0%
GGAGGACCAATTCCAGGTGT+GGG + chr2_3:35459801-35459820 Msa0289220:intron 55.0%
CCAACTCCCACACCTGGAAT+TGG - chr2_3:35459810-35459829 None:intergenic 55.0%
CCAATTCCAGGTGTGGGAGT+TGG + chr2_3:35459807-35459826 Msa0289220:intron 55.0%
TCAAATCGCGGCCCTGTCAA+GGG - chr2_3:35461164-35461183 None:intergenic 55.0%
GTTCACCTGTGCCAGAAGAG+AGG - chr2_3:35461541-35461560 None:intergenic 55.0%
!! ACGTACTGACTGGAGGGTAG+TGG + chr2_3:35461638-35461657 Msa0289220:three_prime_UTR 55.0%
!! CGTACTGACTGGAGGGTAGT+GGG + chr2_3:35461639-35461658 Msa0289220:three_prime_UTR 55.0%
CCTCATCCAACTCCCACACC+TGG - chr2_3:35459816-35459835 None:intergenic 60.0%
CCAGGTGTGGGAGTTGGATG+AGG + chr2_3:35459813-35459832 Msa0289220:intron 60.0%
! GTGCCCCTGGCAGAGGATTT+TGG + chr2_3:35459835-35459854 Msa0289220:intron 60.0%
AACGGCAGGACCTGGGGATA+TGG + chr2_3:35459986-35460005 Msa0289220:CDS 60.0%
CTCAAATCGCGGCCCTGTCA+AGG - chr2_3:35461165-35461184 None:intergenic 60.0%
CTTGACAGGGCCGCGATTTG+AGG + chr2_3:35461163-35461182 Msa0289220:CDS 60.0%
CCTCATCCAACTCCCACACC+TGG - chr2_3:35459816-35459835 None:intergenic 60.0%
CCAGGTGTGGGAGTTGGATG+AGG + chr2_3:35459813-35459832 Msa0289220:intron 60.0%
! GTGCCCCTGGCAGAGGATTT+TGG + chr2_3:35459835-35459854 Msa0289220:intron 60.0%
AACGGCAGGACCTGGGGATA+TGG + chr2_3:35459986-35460005 Msa0289220:CDS 60.0%
CTCAAATCGCGGCCCTGTCA+AGG - chr2_3:35461165-35461184 None:intergenic 60.0%
CTTGACAGGGCCGCGATTTG+AGG + chr2_3:35461163-35461182 Msa0289220:CDS 60.0%
! GGAGTTGGATGAGGTGCCCC+TGG + chr2_3:35459822-35459841 Msa0289220:intron 65.0%
! GGAGTTGGATGAGGTGCCCC+TGG + chr2_3:35459822-35459841 Msa0289220:intron 65.0%
! GGATGAGGTGCCCCTGGCAG+AGG + chr2_3:35459828-35459847 Msa0289220:intron 70.0%
! GGATGAGGTGCCCCTGGCAG+AGG + chr2_3:35459828-35459847 Msa0289220:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 35459741 35462159 35459741 ID=Msa0289220;Name=Msa0289220
chr2_3 mRNA 35459741 35462159 35459741 ID=Msa0289220-mRNA-1;Parent=Msa0289220;Name=Msa0289220-mRNA-1;_AED=0.33;_eAED=0.35;_QI=0|0.33|0.14|1|0.33|0.28|7|575|321
chr2_3 exon 35459741 35459816 35459741 ID=Msa0289220-mRNA-1:exon:11426;Parent=Msa0289220-mRNA-1
chr2_3 exon 35459916 35460130 35459916 ID=Msa0289220-mRNA-1:exon:11427;Parent=Msa0289220-mRNA-1
chr2_3 exon 35460228 35460320 35460228 ID=Msa0289220-mRNA-1:exon:11428;Parent=Msa0289220-mRNA-1
chr2_3 exon 35460383 35460607 35460383 ID=Msa0289220-mRNA-1:exon:11429;Parent=Msa0289220-mRNA-1
chr2_3 exon 35461112 35461143 35461112 ID=Msa0289220-mRNA-1:exon:11430;Parent=Msa0289220-mRNA-1
chr2_3 exon 35461151 35461322 35461151 ID=Msa0289220-mRNA-1:exon:11431;Parent=Msa0289220-mRNA-1
chr2_3 exon 35461432 35462159 35461432 ID=Msa0289220-mRNA-1:exon:11432;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35459741 35459816 35459741 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35459916 35460130 35459916 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35460228 35460320 35460228 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35460383 35460607 35460383 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35461112 35461143 35461112 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35461151 35461322 35461151 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 CDS 35461432 35461584 35461432 ID=Msa0289220-mRNA-1:cds;Parent=Msa0289220-mRNA-1
chr2_3 three_prime_UTR 35461585 35462159 35461585 ID=Msa0289220-mRNA-1:three_prime_utr;Parent=Msa0289220-mRNA-1
Gene Sequence

>Msa0289220

ATGTCTTCAACTTCTTCAGTGTGGCAGCACATGCAGTCCATTGAATTGATGTTATGCAGAGGAGGACCAATTCCAGTTTTTGAAAATGCAACTGAAGAGACGACCTATACCATTCAACGGAACAACACTGCCTTGGAACTATGTTTAACGGCAGGACCTGGGGATATGGTTGTTATAGAGAGACCATTGGGTTTATTGTTCCATGTCTCTGTTTTGAAGTACTTTGACCTCTGTACACAGAATTTTCTCAGTAGCTGGAGGGGTAAAGAAGCCTTTAGGTCGCAGCAATGTTTACATTCATTATCTATCGATTTCCTTGTTGGAATTGAAGTATTTGTACAAAATCAGGGTGGGATACTTTTGAAGCTTTACAGGATCTTTATGCATATTGAGTTATTGAGATTCAAATTCGAGATTCACGAGAGTTGCTCGATATTTACTCGATGTCAACTTCTTTTGCCTGGCAAGTTTCATTATATTTACACCGCTGTGTTGAATTCCATTCGACTTGCCACCTGGAATACACTGTCTAATGCATGTGTTCCTGAACTTTTGTTACCTTCAGAGAAATGCTTTTCGGGAGCTGAAGGATACCTTGAACCTGCAGAGGATAATGAAGATATTTTGGAGGTTTATGTCAAGTTTCTGATGCCCTTGACAGGGCCGCGATTTGAGGATCATTTGCATATACTATACTTGTCCATCGCCTTCCATCATTCATATTTCATACCTGTCCTGTGGATAAGTTATTGTTGCGCAACAGGCTTGTTGGGTCTCTCTTTGAGAGATTATGCTGGGAAACAGCAACATGAGGGAATGTTAATGAATATCATTTGCCATAGCAAGCAATCAACATCTGACATGGATGAAAAGAGTTGGTTGGAGTTGAAAGAATTGATTGAGGCATGTGATGGAAATTCCTCTCTTCTGGCACAGGTGAACAAGTTGAAGGATGTTGCTGCTTAG
Protein sequence

>Msa0289220

MSSTSSVWQHMQSIELMLCRGGPIPVFENATEETTYTIQRNNTALELCLTAGPGDMVVIERPLGLLFHVSVLKYFDLCTQNFLSSWRGKEAFRSQQCLHSLSIDFLVGIEVFVQNQGGILLKLYRIFMHIELLRFKFEIHESCSIFTRCQLLLPGKFHYIYTAVLNSIRLATWNTLSNACVPELLLPSEKCFSGAEGYLEPAEDNEDILEVYVKFLMPLTGPRFEDHLHILYLSIAFHHSYFIPVLWISYCCATGLLGLSLRDYAGKQQHEGMLMNIICHSKQSTSDMDEKSWLELKELIEACDGNSSLLAQVNKLKDVAA*