Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299550 | XP_013465058.1 | 95.076 | 264 | 13 | 0 | 1 | 264 | 1 | 264 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299550 | sp|Q94K41|SDR3B_ARATH | 61.176 | 255 | 99 | 0 | 1 | 255 | 1 | 255 | 8.03e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299550 | A0A072VCB0 | 95.076 | 264 | 13 | 0 | 1 | 264 | 1 | 264 | 0.0 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029900 | Msa0299550 | 0.803795 | 2.939027e-49 | -8.615850e-47 |
| Msa0029910 | Msa0299550 | 0.807449 | 5.026871e-50 | -8.615850e-47 |
| Msa0077120 | Msa0299550 | 0.828249 | 9.985806e-55 | -8.615850e-47 |
| Msa0170090 | Msa0299550 | 0.804626 | 1.973315e-49 | -8.615850e-47 |
| Msa0220420 | Msa0299550 | 0.923162 | 3.816484e-89 | -8.615850e-47 |
| Msa0261640 | Msa0299550 | 0.900770 | 5.250526e-78 | -8.615850e-47 |
| Msa0299550 | Msa0317510 | 0.804138 | 2.494871e-49 | -8.615850e-47 |
| Msa0299550 | Msa0337040 | 0.873776 | 1.131191e-67 | -8.615850e-47 |
| Msa0299550 | Msa0626280 | 0.810372 | 1.191368e-50 | -8.615850e-47 |
| Msa0299550 | Msa0682550 | 0.800752 | 1.243883e-48 | -8.615850e-47 |
| Msa0299550 | Msa0693380 | 0.811461 | 6.920517e-51 | -8.615850e-47 |
| Msa0299550 | Msa1179280 | 0.804181 | 2.443648e-49 | -8.615850e-47 |
| Msa0299550 | Msa1313970 | 0.804318 | 2.288727e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299550 | MtrunA17_Chr2g0324021 | 95.076 | 264 | 13 | 0 | 1 | 264 | 1 | 264 | 0.0 | 512 |
| Msa0299550 | MtrunA17_Chr7g0270441 | 81.579 | 266 | 47 | 2 | 1 | 264 | 1 | 266 | 3.95e-155 | 432 |
| Msa0299550 | MtrunA17_Chr7g0270451 | 69.349 | 261 | 79 | 1 | 1 | 261 | 1 | 260 | 2.46e-130 | 369 |
| Msa0299550 | MtrunA17_Chr7g0270471 | 83.784 | 148 | 24 | 0 | 112 | 259 | 1 | 148 | 9.11e-87 | 255 |
| Msa0299550 | MtrunA17_Chr6g0459261 | 50.598 | 251 | 122 | 2 | 5 | 253 | 24 | 274 | 3.75e-86 | 258 |
| Msa0299550 | MtrunA17_Chr7g0266981 | 50.980 | 255 | 123 | 2 | 3 | 256 | 10 | 263 | 2.10e-82 | 248 |
| Msa0299550 | MtrunA17_Chr4g0044111 | 50.588 | 255 | 124 | 2 | 3 | 256 | 10 | 263 | 3.37e-81 | 245 |
| Msa0299550 | MtrunA17_Chr6g0459281 | 51.600 | 250 | 119 | 2 | 5 | 252 | 12 | 261 | 3.45e-81 | 245 |
| Msa0299550 | MtrunA17_Chr6g0459351 | 50.593 | 253 | 123 | 2 | 2 | 252 | 9 | 261 | 3.76e-81 | 245 |
| Msa0299550 | MtrunA17_Chr6g0459331 | 50.996 | 251 | 121 | 2 | 5 | 253 | 12 | 262 | 4.08e-81 | 244 |
| Msa0299550 | MtrunA17_Chr7g0244061 | 50.360 | 278 | 116 | 4 | 2 | 259 | 25 | 300 | 1.55e-80 | 244 |
| Msa0299550 | MtrunA17_Chr6g0459271 | 49.004 | 251 | 126 | 2 | 5 | 253 | 12 | 262 | 4.31e-79 | 239 |
| Msa0299550 | MtrunA17_Chr6g0459301 | 47.244 | 254 | 132 | 2 | 2 | 253 | 10 | 263 | 1.57e-78 | 238 |
| Msa0299550 | MtrunA17_Chr7g0266891 | 50.000 | 252 | 124 | 2 | 6 | 256 | 7 | 257 | 1.64e-78 | 238 |
| Msa0299550 | MtrunA17_Chr4g0026001 | 50.588 | 255 | 121 | 3 | 4 | 257 | 12 | 262 | 2.91e-78 | 238 |
| Msa0299550 | MtrunA17_Chr4g0025971 | 49.606 | 254 | 123 | 3 | 4 | 256 | 12 | 261 | 5.80e-77 | 234 |
| Msa0299550 | MtrunA17_Chr4g0025981 | 50.199 | 251 | 120 | 3 | 7 | 256 | 42 | 288 | 1.84e-75 | 232 |
| Msa0299550 | MtrunA17_Chr4g0044131 | 47.328 | 262 | 135 | 3 | 4 | 263 | 6 | 266 | 9.22e-73 | 223 |
| Msa0299550 | MtrunA17_Chr6g0463951 | 63.158 | 171 | 63 | 0 | 87 | 257 | 1 | 171 | 4.76e-72 | 218 |
| Msa0299550 | MtrunA17_Chr7g0268591 | 44.922 | 256 | 133 | 4 | 4 | 253 | 31 | 284 | 7.94e-71 | 219 |
| Msa0299550 | MtrunA17_Chr7g0252031 | 46.617 | 266 | 132 | 7 | 4 | 261 | 33 | 296 | 1.51e-70 | 219 |
| Msa0299550 | MtrunA17_Chr4g0040371 | 43.223 | 273 | 142 | 5 | 1 | 264 | 14 | 282 | 7.52e-64 | 201 |
| Msa0299550 | MtrunA17_Chr7g0267001 | 45.211 | 261 | 124 | 4 | 4 | 263 | 6 | 248 | 4.60e-63 | 198 |
| Msa0299550 | MtrunA17_Chr3g0084871 | 43.494 | 269 | 141 | 5 | 4 | 263 | 14 | 280 | 3.49e-62 | 197 |
| Msa0299550 | MtrunA17_Chr7g0267011 | 48.677 | 189 | 95 | 2 | 4 | 191 | 6 | 193 | 5.91e-54 | 173 |
| Msa0299550 | MtrunA17_Chr7g0270461 | 84.946 | 93 | 14 | 0 | 4 | 96 | 44 | 136 | 1.54e-50 | 162 |
| Msa0299550 | MtrunA17_Chr7g0266991 | 42.424 | 231 | 114 | 3 | 4 | 233 | 23 | 235 | 8.27e-50 | 164 |
| Msa0299550 | MtrunA17_Chr4g0044121 | 47.953 | 171 | 87 | 2 | 87 | 256 | 1 | 170 | 1.33e-44 | 148 |
| Msa0299550 | MtrunA17_Chr3g0142651 | 48.718 | 117 | 58 | 2 | 87 | 202 | 1 | 116 | 8.48e-31 | 111 |
| Msa0299550 | MtrunA17_Chr4g0028921 | 31.071 | 280 | 145 | 8 | 1 | 251 | 1 | 261 | 2.37e-25 | 101 |
| Msa0299550 | MtrunA17_Chr4g0028911 | 30.037 | 273 | 163 | 6 | 1 | 254 | 1 | 264 | 3.09e-22 | 92.8 |
| Msa0299550 | MtrunA17_Chr3g0122901 | 26.616 | 263 | 162 | 10 | 4 | 252 | 73 | 318 | 9.88e-21 | 89.7 |
| Msa0299550 | MtrunA17_Chr4g0074511 | 27.863 | 262 | 163 | 8 | 5 | 251 | 39 | 289 | 1.24e-20 | 89.0 |
| Msa0299550 | MtrunA17_Chr7g0272961 | 26.316 | 266 | 170 | 7 | 5 | 256 | 39 | 292 | 1.99e-20 | 88.2 |
| Msa0299550 | MtrunA17_Chr1g0191751 | 29.537 | 281 | 142 | 12 | 5 | 256 | 100 | 353 | 3.90e-20 | 88.6 |
| Msa0299550 | MtrunA17_Chr4g0075531 | 28.346 | 254 | 167 | 6 | 4 | 252 | 5 | 248 | 1.55e-19 | 85.1 |
| Msa0299550 | MtrunA17_Chr0c30g0494101 | 27.757 | 263 | 160 | 9 | 5 | 251 | 39 | 287 | 2.35e-18 | 82.4 |
| Msa0299550 | MtrunA17_Chr1g0171831 | 31.122 | 196 | 123 | 4 | 4 | 187 | 12 | 207 | 3.88e-16 | 75.9 |
| Msa0299550 | MtrunA17_Chr3g0112151 | 26.070 | 257 | 180 | 6 | 2 | 254 | 82 | 332 | 2.06e-15 | 74.7 |
| Msa0299550 | MtrunA17_Chr3g0112141 | 26.190 | 252 | 176 | 6 | 6 | 253 | 17 | 262 | 3.99e-15 | 73.2 |
| Msa0299550 | MtrunA17_Chr3g0112171 | 26.718 | 262 | 181 | 7 | 6 | 263 | 15 | 269 | 4.93e-15 | 73.2 |
| Msa0299550 | MtrunA17_Chr8g0357481 | 28.358 | 268 | 172 | 10 | 6 | 260 | 14 | 274 | 5.98e-15 | 73.2 |
| Msa0299550 | MtrunA17_Chr3g0112271 | 28.090 | 267 | 181 | 8 | 1 | 263 | 12 | 271 | 3.33e-14 | 70.9 |
| Msa0299550 | MtrunA17_Chr4g0045061 | 27.203 | 261 | 149 | 7 | 8 | 248 | 6 | 245 | 1.15e-13 | 70.5 |
| Msa0299550 | MtrunA17_Chr3g0112261 | 26.866 | 268 | 164 | 9 | 3 | 255 | 16 | 266 | 3.71e-13 | 67.8 |
| Msa0299550 | MtrunA17_Chr7g0239491 | 28.897 | 263 | 166 | 10 | 2 | 253 | 11 | 263 | 5.15e-13 | 67.4 |
| Msa0299550 | MtrunA17_Chr4g0045041 | 27.536 | 207 | 128 | 4 | 8 | 197 | 6 | 207 | 8.73e-13 | 67.8 |
| Msa0299550 | MtrunA17_Chr7g0259531 | 30.078 | 256 | 163 | 8 | 6 | 252 | 11 | 259 | 9.34e-13 | 66.6 |
| Msa0299550 | MtrunA17_Chr3g0124481 | 33.094 | 139 | 87 | 3 | 56 | 192 | 59 | 193 | 9.82e-13 | 66.6 |
| Msa0299550 | MtrunA17_Chr4g0054341 | 27.225 | 191 | 131 | 5 | 7 | 194 | 3 | 188 | 1.33e-12 | 66.2 |
| Msa0299550 | MtrunA17_Chr7g0239481 | 30.268 | 261 | 164 | 9 | 2 | 252 | 11 | 263 | 3.56e-12 | 64.7 |
| Msa0299550 | MtrunA17_Chr7g0239501 | 27.376 | 263 | 173 | 9 | 2 | 254 | 12 | 266 | 4.32e-12 | 64.7 |
| Msa0299550 | MtrunA17_Chr7g0239511 | 25.954 | 262 | 178 | 7 | 2 | 254 | 12 | 266 | 7.66e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299550 | AT2G47140.1 | 61.176 | 255 | 99 | 0 | 1 | 255 | 1 | 255 | 8.16e-112 | 323 |
| Msa0299550 | AT3G29250.2 | 58.203 | 256 | 107 | 0 | 1 | 256 | 1 | 256 | 7.37e-103 | 300 |
| Msa0299550 | AT3G29250.3 | 58.203 | 256 | 107 | 0 | 1 | 256 | 37 | 292 | 2.36e-102 | 300 |
| Msa0299550 | AT2G47130.1 | 58.984 | 256 | 104 | 1 | 1 | 256 | 1 | 255 | 7.53e-102 | 297 |
| Msa0299550 | AT3G29250.1 | 57.874 | 254 | 107 | 0 | 3 | 256 | 41 | 294 | 2.00e-101 | 298 |
| Msa0299550 | AT2G47120.1 | 56.641 | 256 | 109 | 2 | 1 | 256 | 1 | 254 | 1.07e-100 | 294 |
| Msa0299550 | AT3G29260.1 | 58.594 | 256 | 105 | 1 | 1 | 256 | 1 | 255 | 8.27e-100 | 292 |
| Msa0299550 | AT2G47120.2 | 56.746 | 252 | 107 | 2 | 5 | 256 | 6 | 255 | 9.43e-100 | 292 |
| Msa0299550 | AT3G51680.1 | 48.529 | 272 | 124 | 3 | 4 | 259 | 30 | 301 | 1.15e-76 | 235 |
| Msa0299550 | AT3G26770.1 | 43.494 | 269 | 138 | 6 | 4 | 261 | 39 | 304 | 4.50e-64 | 203 |
| Msa0299550 | AT4G03140.1 | 43.411 | 258 | 138 | 4 | 4 | 255 | 76 | 331 | 6.52e-63 | 201 |
| Msa0299550 | AT1G52340.1 | 45.693 | 267 | 127 | 6 | 4 | 256 | 16 | 278 | 5.88e-62 | 197 |
| Msa0299550 | AT3G26760.1 | 40.000 | 270 | 150 | 5 | 2 | 261 | 32 | 299 | 1.23e-61 | 196 |
| Msa0299550 | AT3G42960.1 | 43.820 | 267 | 126 | 4 | 2 | 253 | 4 | 261 | 1.47e-55 | 180 |
| Msa0299550 | AT2G47150.1 | 36.255 | 251 | 107 | 6 | 6 | 256 | 1 | 198 | 2.20e-37 | 131 |
| Msa0299550 | AT3G55290.2 | 29.278 | 263 | 157 | 6 | 6 | 251 | 17 | 267 | 7.13e-21 | 89.7 |
| Msa0299550 | AT3G55290.1 | 29.278 | 263 | 157 | 6 | 6 | 251 | 18 | 268 | 7.24e-21 | 89.7 |
| Msa0299550 | AT1G62610.3 | 29.412 | 255 | 168 | 5 | 6 | 251 | 15 | 266 | 4.79e-20 | 87.4 |
| Msa0299550 | AT1G62610.2 | 29.412 | 255 | 168 | 5 | 6 | 251 | 13 | 264 | 5.14e-20 | 87.4 |
| Msa0299550 | AT1G62610.1 | 29.412 | 255 | 168 | 5 | 6 | 251 | 14 | 265 | 5.39e-20 | 87.4 |
| Msa0299550 | AT1G62610.4 | 29.412 | 255 | 168 | 5 | 6 | 251 | 19 | 270 | 5.41e-20 | 87.4 |
| Msa0299550 | AT1G07450.1 | 28.736 | 261 | 169 | 7 | 1 | 254 | 3 | 253 | 5.81e-20 | 86.7 |
| Msa0299550 | AT3G55310.1 | 29.057 | 265 | 155 | 7 | 6 | 251 | 17 | 267 | 1.06e-18 | 83.6 |
| Msa0299550 | AT2G29310.1 | 27.778 | 270 | 157 | 8 | 3 | 254 | 4 | 253 | 1.31e-18 | 83.2 |
| Msa0299550 | AT3G46170.1 | 28.458 | 253 | 172 | 5 | 6 | 251 | 26 | 276 | 1.34e-18 | 83.6 |
| Msa0299550 | AT2G29340.2 | 28.788 | 264 | 162 | 8 | 3 | 254 | 4 | 253 | 1.73e-18 | 82.8 |
| Msa0299550 | AT2G29340.1 | 29.008 | 262 | 164 | 9 | 3 | 254 | 4 | 253 | 2.32e-18 | 83.2 |
| Msa0299550 | AT1G63380.3 | 27.715 | 267 | 163 | 6 | 6 | 254 | 15 | 269 | 2.43e-18 | 82.8 |
| Msa0299550 | AT1G63380.4 | 27.715 | 267 | 163 | 6 | 6 | 254 | 19 | 273 | 2.62e-18 | 82.8 |
| Msa0299550 | AT1G63380.2 | 27.715 | 267 | 163 | 6 | 6 | 254 | 22 | 276 | 2.84e-18 | 82.8 |
| Msa0299550 | AT1G63380.1 | 27.715 | 267 | 163 | 6 | 6 | 254 | 17 | 271 | 2.94e-18 | 82.4 |
| Msa0299550 | AT4G05530.1 | 30.709 | 254 | 161 | 7 | 4 | 252 | 7 | 250 | 4.33e-18 | 81.6 |
| Msa0299550 | AT1G24360.1 | 25.856 | 263 | 168 | 10 | 4 | 254 | 72 | 319 | 1.20e-17 | 81.3 |
| Msa0299550 | AT2G29150.1 | 28.185 | 259 | 171 | 8 | 2 | 254 | 12 | 261 | 3.79e-17 | 79.3 |
| Msa0299550 | AT1G54870.2 | 26.316 | 266 | 170 | 7 | 5 | 256 | 83 | 336 | 4.53e-17 | 80.1 |
| Msa0299550 | AT1G54870.1 | 26.316 | 266 | 170 | 7 | 5 | 256 | 81 | 334 | 4.72e-17 | 79.7 |
| Msa0299550 | AT2G17845.1 | 27.341 | 267 | 168 | 7 | 6 | 255 | 47 | 304 | 6.16e-17 | 79.3 |
| Msa0299550 | AT2G30670.1 | 26.275 | 255 | 180 | 5 | 3 | 254 | 4 | 253 | 1.70e-16 | 77.4 |
| Msa0299550 | AT5G06060.1 | 29.070 | 258 | 169 | 7 | 3 | 254 | 6 | 255 | 2.24e-16 | 77.0 |
| Msa0299550 | AT2G29290.2 | 27.652 | 264 | 165 | 6 | 3 | 254 | 4 | 253 | 2.80e-16 | 76.6 |
| Msa0299550 | AT1G07440.1 | 27.734 | 256 | 174 | 8 | 3 | 254 | 9 | 257 | 2.58e-15 | 74.3 |
| Msa0299550 | AT2G29370.1 | 27.068 | 266 | 176 | 8 | 3 | 260 | 13 | 268 | 3.93e-15 | 73.6 |
| Msa0299550 | AT2G29350.1 | 27.027 | 259 | 174 | 7 | 2 | 254 | 11 | 260 | 4.79e-15 | 73.6 |
| Msa0299550 | AT2G29360.1 | 27.099 | 262 | 169 | 9 | 3 | 254 | 13 | 262 | 7.51e-15 | 72.8 |
| Msa0299550 | AT2G29260.1 | 28.413 | 271 | 158 | 10 | 2 | 254 | 62 | 314 | 9.85e-15 | 73.2 |
| Msa0299550 | AT2G29340.3 | 30.151 | 199 | 128 | 7 | 3 | 195 | 4 | 197 | 2.04e-14 | 70.5 |
| Msa0299550 | AT2G29340.4 | 30.151 | 199 | 128 | 7 | 3 | 195 | 4 | 197 | 2.04e-14 | 70.5 |
| Msa0299550 | AT3G05260.1 | 26.437 | 261 | 172 | 8 | 5 | 254 | 36 | 287 | 2.20e-14 | 72.0 |
| Msa0299550 | AT3G12800.1 | 28.413 | 271 | 171 | 11 | 6 | 261 | 10 | 272 | 2.80e-14 | 71.6 |
| Msa0299550 | AT2G29290.1 | 28.000 | 200 | 138 | 4 | 56 | 254 | 42 | 236 | 2.95e-14 | 70.9 |
| Msa0299550 | AT1G49670.2 | 30.045 | 223 | 125 | 7 | 8 | 210 | 6 | 217 | 4.35e-14 | 72.4 |
| Msa0299550 | AT1G49670.1 | 30.045 | 223 | 125 | 7 | 8 | 210 | 6 | 217 | 4.75e-14 | 72.0 |
| Msa0299550 | AT1G10310.1 | 33.333 | 132 | 86 | 2 | 63 | 194 | 73 | 202 | 1.75e-13 | 68.6 |
| Msa0299550 | AT4G13180.1 | 31.034 | 261 | 158 | 10 | 6 | 254 | 13 | 263 | 4.91e-13 | 67.8 |
| Msa0299550 | AT2G29310.3 | 28.019 | 207 | 122 | 6 | 3 | 195 | 4 | 197 | 6.35e-13 | 66.2 |
| Msa0299550 | AT5G50770.1 | 28.796 | 191 | 128 | 5 | 1 | 187 | 40 | 226 | 2.85e-12 | 66.2 |
| Msa0299550 | AT2G29330.1 | 26.172 | 256 | 179 | 6 | 3 | 254 | 4 | 253 | 4.42e-12 | 65.1 |
| Msa0299550 | AT2G29350.3 | 27.000 | 200 | 139 | 5 | 56 | 254 | 29 | 222 | 5.45e-12 | 64.3 |
| Msa0299550 | AT2G29350.2 | 27.500 | 200 | 134 | 5 | 2 | 195 | 11 | 205 | 1.20e-11 | 63.2 |
| Msa0299550 | AT2G29310.2 | 25.862 | 232 | 152 | 7 | 32 | 254 | 31 | 251 | 2.38e-11 | 62.8 |
| Msa0299550 | AT5G18210.1 | 28.148 | 270 | 161 | 11 | 2 | 252 | 4 | 259 | 4.44e-11 | 62.0 |
Find 57 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAATAAGCTATGTGATT+TGG | 0.275812 | 2_3:+54538200 | Msa0299550:three_prime_UTR |
| TGCAGTGAGCTTGGAGCTTA+TGG | 0.278067 | 2_3:+54537741 | Msa0299550:CDS |
| AGCAGATATCAATGATGAAT+TGG | 0.283540 | 2_3:+54537338 | Msa0299550:CDS |
| TGGTGTTGTCAAATTCATTT+AGG | 0.283555 | 2_3:-54537539 | None:intergenic |
| GCATCAAAACATGGTCTTAT+AGG | 0.284802 | 2_3:+54537702 | Msa0299550:CDS |
| CATCATGTTGCAAATTCAAT+AGG | 0.308261 | 2_3:+54537363 | Msa0299550:CDS |
| GTAAAGATATTCGTGGAAAA+TGG | 0.310172 | 2_3:+54537300 | Msa0299550:CDS |
| TACACTGGCAGTGCAAATTA+TGG | 0.353051 | 2_3:-54537640 | None:intergenic |
| TCATGATTATGCTAATTTGC+AGG | 0.357464 | 2_3:+54537857 | Msa0299550:CDS |
| GATGAATCTGCTTATGTTAG+TGG | 0.370705 | 2_3:+54537933 | Msa0299550:CDS |
| ATGGTCTTATAGGACTTGTT+AGG | 0.392057 | 2_3:+54537712 | Msa0299550:CDS |
| GACATCATGTTTAGCAATGC+TGG | 0.394298 | 2_3:+54537480 | Msa0299550:CDS |
| GCTTTCACGTTGGAGAGATA+TGG | 0.399630 | 2_3:+54537450 | Msa0299550:CDS |
| ACTGGGGCAGCAAGCGGAAT+AGG | 0.399759 | 2_3:+54537267 | Msa0299550:CDS |
| ATTGCTAAACATGATGTCTA+AGG | 0.408097 | 2_3:-54537475 | None:intergenic |
| ACCAACAGCTTCAACTTCAC+TGG | 0.415009 | 2_3:-54537835 | None:intergenic |
| ATTTGCACTGCCAGTGTAGC+TGG | 0.419113 | 2_3:+54537645 | Msa0299550:CDS |
| CAACTTGTTTCTCATCTCTC+AGG | 0.421960 | 2_3:-54537416 | None:intergenic |
| TGATCATAGGTTGGAGGGTA+AGG | 0.428592 | 2_3:+54537233 | Msa0299550:intron |
| AATTCTAGTATGCTAGATAA+AGG | 0.435820 | 2_3:-54537513 | None:intergenic |
| ATCATGTTGCAAATTCAATA+GGG | 0.440902 | 2_3:+54537364 | Msa0299550:CDS |
| CTCTTATCTTATCTTTCTAC+CGG | 0.449812 | 2_3:+54538026 | Msa0299550:three_prime_UTR |
| GCAGATATCAATGATGAATT+GGG | 0.463215 | 2_3:+54537339 | Msa0299550:CDS |
| GTGGCTTCTCAGTCATTAAT+CGG | 0.474841 | 2_3:+54537976 | Msa0299550:CDS |
| AGAGTGAATGATAGAGAAAC+CGG | 0.489543 | 2_3:-54538045 | None:intergenic |
| TTTGCAGGGAATTACATTGA+AGG | 0.494365 | 2_3:+54537872 | Msa0299550:CDS |
| TTTAGCAATGCTGGTAATGC+TGG | 0.499968 | 2_3:+54537489 | Msa0299550:CDS |
| AGAGGTGTAGCAACAGCATA+AGG | 0.501265 | 2_3:-54537786 | None:intergenic |
| GATTAAACTTAGCAAGCAAA+AGG | 0.503429 | 2_3:+54537051 | None:intergenic |
| GGTAAGGTAGCTATAGTGAC+TGG | 0.506112 | 2_3:+54537249 | Msa0299550:CDS |
| GGACACAACTTGGTCGTTGA+TGG | 0.511755 | 2_3:+54537954 | Msa0299550:CDS |
| CATGATTATGCTAATTTGCA+GGG | 0.513662 | 2_3:+54537858 | Msa0299550:CDS |
| AGGTCAACATGCAGTGAGCT+TGG | 0.516394 | 2_3:+54537732 | Msa0299550:CDS |
| ACCTCTTGCATGTAGAGCAC+TGG | 0.521993 | 2_3:+54537803 | Msa0299550:CDS |
| CAAGCATGCTGCACGTGTAA+TGG | 0.527529 | 2_3:+54537596 | Msa0299550:CDS |
| ACCAACAAAACCAGCTACAC+TGG | 0.550665 | 2_3:-54537655 | None:intergenic |
| TTATGTTAGTGGACACAACT+TGG | 0.559853 | 2_3:+54537944 | Msa0299550:CDS |
| ACCATGGCTGTGAACGTTCG+TGG | 0.565494 | 2_3:+54537558 | Msa0299550:CDS |
| CCAACAGCTTCAACTTCACT+GGG | 0.567306 | 2_3:-54537834 | None:intergenic |
| ACCACGAACGTTCACAGCCA+TGG | 0.577592 | 2_3:-54537559 | None:intergenic |
| AGAAGCAGTAAAGATATTCG+TGG | 0.578218 | 2_3:+54537293 | Msa0299550:CDS |
| GTAAGGTAGCTATAGTGACT+GGG | 0.582532 | 2_3:+54537250 | Msa0299550:CDS |
| CCCAGTGAAGTTGAAGCTGT+TGG | 0.588946 | 2_3:+54537834 | Msa0299550:CDS |
| CACAACTTGGTCGTTGATGG+TGG | 0.601290 | 2_3:+54537957 | Msa0299550:CDS |
| AAGGTTCATAACTCAAAGCA+AGG | 0.606203 | 2_3:+54537070 | Msa0299550:five_prime_UTR |
| TCCAGTGCTCTACATGCAAG+AGG | 0.608317 | 2_3:-54537804 | None:intergenic |
| ATAGTGACTGGGGCAGCAAG+CGG | 0.610587 | 2_3:+54537261 | Msa0299550:CDS |
| CATCTCTCAGGTCACAGTGG+TGG | 0.620723 | 2_3:-54537404 | None:intergenic |
| GGAAATTGTTGCTTTCACGT+TGG | 0.626510 | 2_3:+54537440 | Msa0299550:CDS |
| TGCATGTAGAGCACTGGACA+TGG | 0.628198 | 2_3:+54537809 | Msa0299550:CDS |
| AATCATCAATGTCAAAACAA+AGG | 0.629421 | 2_3:+54537104 | Msa0299550:exon |
| GCATGCTGCACGTGTAATGG+TGG | 0.633944 | 2_3:+54537599 | Msa0299550:CDS |
| GAGAGATGAGAAACAAGTTG+AGG | 0.635217 | 2_3:+54537419 | Msa0299550:CDS |
| GATTATACAGCATCAAAACA+TGG | 0.649473 | 2_3:+54537693 | Msa0299550:CDS |
| TCTCATCTCTCAGGTCACAG+TGG | 0.665905 | 2_3:-54537407 | None:intergenic |
| AAATGAATTTGACAACACCA+TGG | 0.674818 | 2_3:+54537542 | Msa0299550:CDS |
| TAAGGTAGCTATAGTGACTG+GGG | 0.695873 | 2_3:+54537251 | Msa0299550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTATGATCAT+AGG | + | chr2_3:54537220-54537239 | Msa0299550:intron | 10.0% |
| !!! | TTAATATTTTTTCTCTTATT+CGG | - | chr2_3:54538145-54538164 | None:intergenic | 10.0% |
| !!! | ATATTTTATTTTATGATCAT+AGG | + | chr2_3:54537220-54537239 | Msa0299550:intron | 10.0% |
| !!! | TTAATATTTTTTCTCTTATT+CGG | - | chr2_3:54538145-54538164 | None:intergenic | 10.0% |
| !!! | AGTTATCATTTTTTAATACT+AGG | - | chr2_3:54538008-54538027 | None:intergenic | 15.0% |
| !!! | AGTTATCATTTTTTAATACT+AGG | - | chr2_3:54538008-54538027 | None:intergenic | 15.0% |
| !!! | TTTATTTTATGATCATAGGT+TGG | + | chr2_3:54537224-54537243 | Msa0299550:intron | 20.0% |
| !! | ATAAAATAAGCTATGTGATT+TGG | + | chr2_3:54538200-54538219 | Msa0299550:three_prime_UTR | 20.0% |
| !!! | TTTATTTTATGATCATAGGT+TGG | + | chr2_3:54537224-54537243 | Msa0299550:intron | 20.0% |
| !! | ATAAAATAAGCTATGTGATT+TGG | + | chr2_3:54538200-54538219 | Msa0299550:three_prime_UTR | 20.0% |
| ! | AATCATCAATGTCAAAACAA+AGG | + | chr2_3:54537104-54537123 | Msa0299550:exon | 25.0% |
| ! | ATCATGTTGCAAATTCAATA+GGG | + | chr2_3:54537364-54537383 | Msa0299550:CDS | 25.0% |
| ! | AATTCTAGTATGCTAGATAA+AGG | - | chr2_3:54537516-54537535 | None:intergenic | 25.0% |
| ! | AATCATCAATGTCAAAACAA+AGG | + | chr2_3:54537104-54537123 | Msa0299550:exon | 25.0% |
| ! | ATCATGTTGCAAATTCAATA+GGG | + | chr2_3:54537364-54537383 | Msa0299550:CDS | 25.0% |
| ! | AATTCTAGTATGCTAGATAA+AGG | - | chr2_3:54537516-54537535 | None:intergenic | 25.0% |
| TGTTATAAGCCAATAGAAAC+AGG | - | chr2_3:54537186-54537205 | None:intergenic | 30.0% | |
| !! | ATTTTATGATCATAGGTTGG+AGG | + | chr2_3:54537227-54537246 | Msa0299550:intron | 30.0% |
| !! | TTTTATGATCATAGGTTGGA+GGG | + | chr2_3:54537228-54537247 | Msa0299550:intron | 30.0% |
| GTAAAGATATTCGTGGAAAA+TGG | + | chr2_3:54537300-54537319 | Msa0299550:CDS | 30.0% | |
| AGCAGATATCAATGATGAAT+TGG | + | chr2_3:54537338-54537357 | Msa0299550:CDS | 30.0% | |
| GCAGATATCAATGATGAATT+GGG | + | chr2_3:54537339-54537358 | Msa0299550:CDS | 30.0% | |
| CATCATGTTGCAAATTCAAT+AGG | + | chr2_3:54537363-54537382 | Msa0299550:CDS | 30.0% | |
| ATTGCTAAACATGATGTCTA+AGG | - | chr2_3:54537478-54537497 | None:intergenic | 30.0% | |
| !! | TGGTGTTGTCAAATTCATTT+AGG | - | chr2_3:54537542-54537561 | None:intergenic | 30.0% |
| AAATGAATTTGACAACACCA+TGG | + | chr2_3:54537542-54537561 | Msa0299550:CDS | 30.0% | |
| GATTATACAGCATCAAAACA+TGG | + | chr2_3:54537693-54537712 | Msa0299550:CDS | 30.0% | |
| ! | TCATGATTATGCTAATTTGC+AGG | + | chr2_3:54537857-54537876 | Msa0299550:CDS | 30.0% |
| ! | CATGATTATGCTAATTTGCA+GGG | + | chr2_3:54537858-54537877 | Msa0299550:CDS | 30.0% |
| CTCTTATCTTATCTTTCTAC+CGG | + | chr2_3:54538026-54538045 | Msa0299550:three_prime_UTR | 30.0% | |
| !!! | AACGTTCTTCTTTTTTTGAG+AGG | + | chr2_3:54538238-54538257 | Msa0299550:three_prime_UTR | 30.0% |
| !!! | TCACTTTTTTGTTGTTGTTG+AGG | - | chr2_3:54538349-54538368 | None:intergenic | 30.0% |
| TGTTATAAGCCAATAGAAAC+AGG | - | chr2_3:54537186-54537205 | None:intergenic | 30.0% | |
| !! | ATTTTATGATCATAGGTTGG+AGG | + | chr2_3:54537227-54537246 | Msa0299550:intron | 30.0% |
| !! | TTTTATGATCATAGGTTGGA+GGG | + | chr2_3:54537228-54537247 | Msa0299550:intron | 30.0% |
| GTAAAGATATTCGTGGAAAA+TGG | + | chr2_3:54537300-54537319 | Msa0299550:CDS | 30.0% | |
| AGCAGATATCAATGATGAAT+TGG | + | chr2_3:54537338-54537357 | Msa0299550:CDS | 30.0% | |
| GCAGATATCAATGATGAATT+GGG | + | chr2_3:54537339-54537358 | Msa0299550:CDS | 30.0% | |
| CATCATGTTGCAAATTCAAT+AGG | + | chr2_3:54537363-54537382 | Msa0299550:CDS | 30.0% | |
| ATTGCTAAACATGATGTCTA+AGG | - | chr2_3:54537478-54537497 | None:intergenic | 30.0% | |
| !! | TGGTGTTGTCAAATTCATTT+AGG | - | chr2_3:54537542-54537561 | None:intergenic | 30.0% |
| AAATGAATTTGACAACACCA+TGG | + | chr2_3:54537542-54537561 | Msa0299550:CDS | 30.0% | |
| GATTATACAGCATCAAAACA+TGG | + | chr2_3:54537693-54537712 | Msa0299550:CDS | 30.0% | |
| ! | TCATGATTATGCTAATTTGC+AGG | + | chr2_3:54537857-54537876 | Msa0299550:CDS | 30.0% |
| ! | CATGATTATGCTAATTTGCA+GGG | + | chr2_3:54537858-54537877 | Msa0299550:CDS | 30.0% |
| CTCTTATCTTATCTTTCTAC+CGG | + | chr2_3:54538026-54538045 | Msa0299550:three_prime_UTR | 30.0% | |
| !!! | AACGTTCTTCTTTTTTTGAG+AGG | + | chr2_3:54538238-54538257 | Msa0299550:three_prime_UTR | 30.0% |
| !!! | TCACTTTTTTGTTGTTGTTG+AGG | - | chr2_3:54538349-54538368 | None:intergenic | 30.0% |
| AAGGTTCATAACTCAAAGCA+AGG | + | chr2_3:54537070-54537089 | Msa0299550:five_prime_UTR | 35.0% | |
| AGAAGCAGTAAAGATATTCG+TGG | + | chr2_3:54537293-54537312 | Msa0299550:CDS | 35.0% | |
| ! | ATGGTGGAAAGAAAAATACG+TGG | + | chr2_3:54537615-54537634 | Msa0299550:CDS | 35.0% |
| !! | GCATCAAAACATGGTCTTAT+AGG | + | chr2_3:54537702-54537721 | Msa0299550:CDS | 35.0% |
| !! | ATGGTCTTATAGGACTTGTT+AGG | + | chr2_3:54537712-54537731 | Msa0299550:CDS | 35.0% |
| TTTGCAGGGAATTACATTGA+AGG | + | chr2_3:54537872-54537891 | Msa0299550:CDS | 35.0% | |
| GATGAATCTGCTTATGTTAG+TGG | + | chr2_3:54537933-54537952 | Msa0299550:CDS | 35.0% | |
| ! | TTATGTTAGTGGACACAACT+TGG | + | chr2_3:54537944-54537963 | Msa0299550:CDS | 35.0% |
| AGAGTGAATGATAGAGAAAC+CGG | - | chr2_3:54538048-54538067 | None:intergenic | 35.0% | |
| AAGGTTCATAACTCAAAGCA+AGG | + | chr2_3:54537070-54537089 | Msa0299550:five_prime_UTR | 35.0% | |
| AGAAGCAGTAAAGATATTCG+TGG | + | chr2_3:54537293-54537312 | Msa0299550:CDS | 35.0% | |
| ! | ATGGTGGAAAGAAAAATACG+TGG | + | chr2_3:54537615-54537634 | Msa0299550:CDS | 35.0% |
| !! | GCATCAAAACATGGTCTTAT+AGG | + | chr2_3:54537702-54537721 | Msa0299550:CDS | 35.0% |
| !! | ATGGTCTTATAGGACTTGTT+AGG | + | chr2_3:54537712-54537731 | Msa0299550:CDS | 35.0% |
| TTTGCAGGGAATTACATTGA+AGG | + | chr2_3:54537872-54537891 | Msa0299550:CDS | 35.0% | |
| GATGAATCTGCTTATGTTAG+TGG | + | chr2_3:54537933-54537952 | Msa0299550:CDS | 35.0% | |
| ! | TTATGTTAGTGGACACAACT+TGG | + | chr2_3:54537944-54537963 | Msa0299550:CDS | 35.0% |
| AGAGTGAATGATAGAGAAAC+CGG | - | chr2_3:54538048-54538067 | None:intergenic | 35.0% | |
| CACTGTACTAGCTAGAAAGA+GGG | - | chr2_3:54537159-54537178 | None:intergenic | 40.0% | |
| ACACTGTACTAGCTAGAAAG+AGG | - | chr2_3:54537160-54537179 | None:intergenic | 40.0% | |
| !! | CAGTGTCTACCTGTTTCTAT+TGG | + | chr2_3:54537174-54537193 | Msa0299550:intron | 40.0% |
| GTAAGGTAGCTATAGTGACT+GGG | + | chr2_3:54537250-54537269 | Msa0299550:CDS | 40.0% | |
| TAAGGTAGCTATAGTGACTG+GGG | + | chr2_3:54537251-54537270 | Msa0299550:CDS | 40.0% | |
| ! | CAACTTGTTTCTCATCTCTC+AGG | - | chr2_3:54537419-54537438 | None:intergenic | 40.0% |
| GAGAGATGAGAAACAAGTTG+AGG | + | chr2_3:54537419-54537438 | Msa0299550:CDS | 40.0% | |
| !! | GGAAATTGTTGCTTTCACGT+TGG | + | chr2_3:54537440-54537459 | Msa0299550:CDS | 40.0% |
| GACATCATGTTTAGCAATGC+TGG | + | chr2_3:54537480-54537499 | Msa0299550:CDS | 40.0% | |
| ! | TTTAGCAATGCTGGTAATGC+TGG | + | chr2_3:54537489-54537508 | Msa0299550:CDS | 40.0% |
| TACACTGGCAGTGCAAATTA+TGG | - | chr2_3:54537643-54537662 | None:intergenic | 40.0% | |
| GTGGCTTCTCAGTCATTAAT+CGG | + | chr2_3:54537976-54537995 | Msa0299550:CDS | 40.0% | |
| CACTGTACTAGCTAGAAAGA+GGG | - | chr2_3:54537159-54537178 | None:intergenic | 40.0% | |
| ACACTGTACTAGCTAGAAAG+AGG | - | chr2_3:54537160-54537179 | None:intergenic | 40.0% | |
| !! | CAGTGTCTACCTGTTTCTAT+TGG | + | chr2_3:54537174-54537193 | Msa0299550:intron | 40.0% |
| GTAAGGTAGCTATAGTGACT+GGG | + | chr2_3:54537250-54537269 | Msa0299550:CDS | 40.0% | |
| TAAGGTAGCTATAGTGACTG+GGG | + | chr2_3:54537251-54537270 | Msa0299550:CDS | 40.0% | |
| ! | CAACTTGTTTCTCATCTCTC+AGG | - | chr2_3:54537419-54537438 | None:intergenic | 40.0% |
| GAGAGATGAGAAACAAGTTG+AGG | + | chr2_3:54537419-54537438 | Msa0299550:CDS | 40.0% | |
| !! | GGAAATTGTTGCTTTCACGT+TGG | + | chr2_3:54537440-54537459 | Msa0299550:CDS | 40.0% |
| GACATCATGTTTAGCAATGC+TGG | + | chr2_3:54537480-54537499 | Msa0299550:CDS | 40.0% | |
| ! | TTTAGCAATGCTGGTAATGC+TGG | + | chr2_3:54537489-54537508 | Msa0299550:CDS | 40.0% |
| TACACTGGCAGTGCAAATTA+TGG | - | chr2_3:54537643-54537662 | None:intergenic | 40.0% | |
| GTGGCTTCTCAGTCATTAAT+CGG | + | chr2_3:54537976-54537995 | Msa0299550:CDS | 40.0% | |
| ! | TGATCATAGGTTGGAGGGTA+AGG | + | chr2_3:54537233-54537252 | Msa0299550:intron | 45.0% |
| GGTAAGGTAGCTATAGTGAC+TGG | + | chr2_3:54537249-54537268 | Msa0299550:CDS | 45.0% | |
| GCTTTCACGTTGGAGAGATA+TGG | + | chr2_3:54537450-54537469 | Msa0299550:CDS | 45.0% | |
| ACCAACAAAACCAGCTACAC+TGG | - | chr2_3:54537658-54537677 | None:intergenic | 45.0% | |
| !!! | AGTGTAGCTGGTTTTGTTGG+TGG | + | chr2_3:54537657-54537676 | Msa0299550:CDS | 45.0% |
| ! | AGAGGTGTAGCAACAGCATA+AGG | - | chr2_3:54537789-54537808 | None:intergenic | 45.0% |
| CCAACAGCTTCAACTTCACT+GGG | - | chr2_3:54537837-54537856 | None:intergenic | 45.0% | |
| ACCAACAGCTTCAACTTCAC+TGG | - | chr2_3:54537838-54537857 | None:intergenic | 45.0% | |
| ! | TGATCATAGGTTGGAGGGTA+AGG | + | chr2_3:54537233-54537252 | Msa0299550:intron | 45.0% |
| GGTAAGGTAGCTATAGTGAC+TGG | + | chr2_3:54537249-54537268 | Msa0299550:CDS | 45.0% | |
| GCTTTCACGTTGGAGAGATA+TGG | + | chr2_3:54537450-54537469 | Msa0299550:CDS | 45.0% | |
| ACCAACAAAACCAGCTACAC+TGG | - | chr2_3:54537658-54537677 | None:intergenic | 45.0% | |
| !!! | AGTGTAGCTGGTTTTGTTGG+TGG | + | chr2_3:54537657-54537676 | Msa0299550:CDS | 45.0% |
| ! | AGAGGTGTAGCAACAGCATA+AGG | - | chr2_3:54537789-54537808 | None:intergenic | 45.0% |
| CCAACAGCTTCAACTTCACT+GGG | - | chr2_3:54537837-54537856 | None:intergenic | 45.0% | |
| ACCAACAGCTTCAACTTCAC+TGG | - | chr2_3:54537838-54537857 | None:intergenic | 45.0% | |
| TCTCATCTCTCAGGTCACAG+TGG | - | chr2_3:54537410-54537429 | None:intergenic | 50.0% | |
| CAAGCATGCTGCACGTGTAA+TGG | + | chr2_3:54537596-54537615 | Msa0299550:CDS | 50.0% | |
| ATTTGCACTGCCAGTGTAGC+TGG | + | chr2_3:54537645-54537664 | Msa0299550:CDS | 50.0% | |
| !!! | GCCAGTGTAGCTGGTTTTGT+TGG | + | chr2_3:54537654-54537673 | Msa0299550:CDS | 50.0% |
| !!! | GGTTTTGTTGGTGGATGTGC+AGG | + | chr2_3:54537666-54537685 | Msa0299550:CDS | 50.0% |
| AGGTCAACATGCAGTGAGCT+TGG | + | chr2_3:54537732-54537751 | Msa0299550:CDS | 50.0% | |
| TGCAGTGAGCTTGGAGCTTA+TGG | + | chr2_3:54537741-54537760 | Msa0299550:CDS | 50.0% | |
| ACCTCTTGCATGTAGAGCAC+TGG | + | chr2_3:54537803-54537822 | Msa0299550:CDS | 50.0% | |
| TCCAGTGCTCTACATGCAAG+AGG | - | chr2_3:54537807-54537826 | None:intergenic | 50.0% | |
| !! | TGCATGTAGAGCACTGGACA+TGG | + | chr2_3:54537809-54537828 | Msa0299550:CDS | 50.0% |
| CCCAGTGAAGTTGAAGCTGT+TGG | + | chr2_3:54537834-54537853 | Msa0299550:CDS | 50.0% | |
| GGACACAACTTGGTCGTTGA+TGG | + | chr2_3:54537954-54537973 | Msa0299550:CDS | 50.0% | |
| ! | CACAACTTGGTCGTTGATGG+TGG | + | chr2_3:54537957-54537976 | Msa0299550:CDS | 50.0% |
| TCTCATCTCTCAGGTCACAG+TGG | - | chr2_3:54537410-54537429 | None:intergenic | 50.0% | |
| CAAGCATGCTGCACGTGTAA+TGG | + | chr2_3:54537596-54537615 | Msa0299550:CDS | 50.0% | |
| ATTTGCACTGCCAGTGTAGC+TGG | + | chr2_3:54537645-54537664 | Msa0299550:CDS | 50.0% | |
| !!! | GCCAGTGTAGCTGGTTTTGT+TGG | + | chr2_3:54537654-54537673 | Msa0299550:CDS | 50.0% |
| !!! | GGTTTTGTTGGTGGATGTGC+AGG | + | chr2_3:54537666-54537685 | Msa0299550:CDS | 50.0% |
| AGGTCAACATGCAGTGAGCT+TGG | + | chr2_3:54537732-54537751 | Msa0299550:CDS | 50.0% | |
| TGCAGTGAGCTTGGAGCTTA+TGG | + | chr2_3:54537741-54537760 | Msa0299550:CDS | 50.0% | |
| ACCTCTTGCATGTAGAGCAC+TGG | + | chr2_3:54537803-54537822 | Msa0299550:CDS | 50.0% | |
| TCCAGTGCTCTACATGCAAG+AGG | - | chr2_3:54537807-54537826 | None:intergenic | 50.0% | |
| !! | TGCATGTAGAGCACTGGACA+TGG | + | chr2_3:54537809-54537828 | Msa0299550:CDS | 50.0% |
| CCCAGTGAAGTTGAAGCTGT+TGG | + | chr2_3:54537834-54537853 | Msa0299550:CDS | 50.0% | |
| GGACACAACTTGGTCGTTGA+TGG | + | chr2_3:54537954-54537973 | Msa0299550:CDS | 50.0% | |
| ! | CACAACTTGGTCGTTGATGG+TGG | + | chr2_3:54537957-54537976 | Msa0299550:CDS | 50.0% |
| ATAGTGACTGGGGCAGCAAG+CGG | + | chr2_3:54537261-54537280 | Msa0299550:CDS | 55.0% | |
| CATCTCTCAGGTCACAGTGG+TGG | - | chr2_3:54537407-54537426 | None:intergenic | 55.0% | |
| ACCATGGCTGTGAACGTTCG+TGG | + | chr2_3:54537558-54537577 | Msa0299550:CDS | 55.0% | |
| ACCACGAACGTTCACAGCCA+TGG | - | chr2_3:54537562-54537581 | None:intergenic | 55.0% | |
| GCATGCTGCACGTGTAATGG+TGG | + | chr2_3:54537599-54537618 | Msa0299550:CDS | 55.0% | |
| ATAGTGACTGGGGCAGCAAG+CGG | + | chr2_3:54537261-54537280 | Msa0299550:CDS | 55.0% | |
| CATCTCTCAGGTCACAGTGG+TGG | - | chr2_3:54537407-54537426 | None:intergenic | 55.0% | |
| ACCATGGCTGTGAACGTTCG+TGG | + | chr2_3:54537558-54537577 | Msa0299550:CDS | 55.0% | |
| ACCACGAACGTTCACAGCCA+TGG | - | chr2_3:54537562-54537581 | None:intergenic | 55.0% | |
| GCATGCTGCACGTGTAATGG+TGG | + | chr2_3:54537599-54537618 | Msa0299550:CDS | 55.0% | |
| ACTGGGGCAGCAAGCGGAAT+AGG | + | chr2_3:54537267-54537286 | Msa0299550:CDS | 60.0% | |
| ACTGGGGCAGCAAGCGGAAT+AGG | + | chr2_3:54537267-54537286 | Msa0299550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54537061 | 54538368 | 54537061 | ID=Msa0299550;Name=Msa0299550 |
| chr2_3 | mRNA | 54537061 | 54538368 | 54537061 | ID=Msa0299550-mRNA-1;Parent=Msa0299550;Name=Msa0299550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|1|1|2|346|264 |
| chr2_3 | exon | 54537061 | 54537125 | 54537061 | ID=Msa0299550-mRNA-1:exon:17425;Parent=Msa0299550-mRNA-1 |
| chr2_3 | exon | 54537242 | 54538368 | 54537242 | ID=Msa0299550-mRNA-1:exon:17426;Parent=Msa0299550-mRNA-1 |
| chr2_3 | five_prime_UTR | 54537061 | 54537111 | 54537061 | ID=Msa0299550-mRNA-1:five_prime_utr;Parent=Msa0299550-mRNA-1 |
| chr2_3 | CDS | 54537112 | 54537125 | 54537112 | ID=Msa0299550-mRNA-1:cds;Parent=Msa0299550-mRNA-1 |
| chr2_3 | CDS | 54537242 | 54538022 | 54537242 | ID=Msa0299550-mRNA-1:cds;Parent=Msa0299550-mRNA-1 |
| chr2_3 | three_prime_UTR | 54538023 | 54538368 | 54538023 | ID=Msa0299550-mRNA-1:three_prime_utr;Parent=Msa0299550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
