Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337040 | XP_013465058.1 | 95.833 | 264 | 11 | 0 | 1 | 264 | 1 | 264 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337040 | sp|Q94K41|SDR3B_ARATH | 61.176 | 255 | 99 | 0 | 1 | 255 | 1 | 255 | 8.03e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0114540 | Msa0337040 | -0.809328 | 1.998077e-50 | -8.615850e-47 |
| Msa0220420 | Msa0337040 | 0.890470 | 9.574824e-74 | -8.615850e-47 |
| Msa0261640 | Msa0337040 | 0.896763 | 2.699336e-76 | -8.615850e-47 |
| Msa0299550 | Msa0337040 | 0.873776 | 1.131191e-67 | -8.615850e-47 |
| Msa0337040 | Msa0426330 | 0.810599 | 1.063761e-50 | -8.615850e-47 |
| Msa0337040 | Msa0707220 | 0.807519 | 4.858954e-50 | -8.615850e-47 |
| Msa0337040 | Msa1032450 | 0.820059 | 8.377192e-53 | -8.615850e-47 |
| Msa0337040 | Msa1037920 | 0.803694 | 3.084463e-49 | -8.615850e-47 |
| Msa0337040 | Msa1041530 | 0.818931 | 1.514619e-52 | -8.615850e-47 |
| Msa0337040 | Msa1081570 | 0.801746 | 7.785809e-49 | -8.615850e-47 |
| Msa0337040 | Msa1127140 | 0.821876 | 3.198424e-53 | -8.615850e-47 |
| Msa0337040 | Msa1166400 | 0.820507 | 6.613939e-53 | -8.615850e-47 |
| Msa0337040 | Msa1169990 | 0.814744 | 1.318296e-51 | -8.615850e-47 |
| Msa0337040 | Msa1182770 | 0.812045 | 5.165052e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337040 | MtrunA17_Chr2g0324021 | 95.833 | 264 | 11 | 0 | 1 | 264 | 1 | 264 | 0.0 | 514 |
| Msa0337040 | MtrunA17_Chr7g0270441 | 81.579 | 266 | 47 | 2 | 1 | 264 | 1 | 266 | 3.95e-155 | 432 |
| Msa0337040 | MtrunA17_Chr7g0270451 | 69.349 | 261 | 79 | 1 | 1 | 261 | 1 | 260 | 2.46e-130 | 369 |
| Msa0337040 | MtrunA17_Chr7g0270471 | 83.784 | 148 | 24 | 0 | 112 | 259 | 1 | 148 | 9.11e-87 | 255 |
| Msa0337040 | MtrunA17_Chr6g0459261 | 50.598 | 251 | 122 | 2 | 5 | 253 | 24 | 274 | 3.75e-86 | 258 |
| Msa0337040 | MtrunA17_Chr7g0266981 | 50.980 | 255 | 123 | 2 | 3 | 256 | 10 | 263 | 2.10e-82 | 248 |
| Msa0337040 | MtrunA17_Chr7g0244061 | 51.079 | 278 | 114 | 4 | 2 | 259 | 25 | 300 | 1.54e-81 | 247 |
| Msa0337040 | MtrunA17_Chr4g0044111 | 50.588 | 255 | 124 | 2 | 3 | 256 | 10 | 263 | 3.37e-81 | 245 |
| Msa0337040 | MtrunA17_Chr6g0459351 | 50.593 | 253 | 123 | 2 | 2 | 252 | 9 | 261 | 3.76e-81 | 245 |
| Msa0337040 | MtrunA17_Chr6g0459331 | 50.996 | 251 | 121 | 2 | 5 | 253 | 12 | 262 | 4.08e-81 | 244 |
| Msa0337040 | MtrunA17_Chr6g0459281 | 51.200 | 250 | 120 | 2 | 5 | 252 | 12 | 261 | 7.40e-81 | 244 |
| Msa0337040 | MtrunA17_Chr6g0459271 | 49.004 | 251 | 126 | 2 | 5 | 253 | 12 | 262 | 4.31e-79 | 239 |
| Msa0337040 | MtrunA17_Chr4g0026001 | 50.980 | 255 | 120 | 3 | 4 | 257 | 12 | 262 | 1.40e-78 | 238 |
| Msa0337040 | MtrunA17_Chr6g0459301 | 47.244 | 254 | 132 | 2 | 2 | 253 | 10 | 263 | 1.57e-78 | 238 |
| Msa0337040 | MtrunA17_Chr7g0266891 | 50.000 | 252 | 124 | 2 | 6 | 256 | 7 | 257 | 1.64e-78 | 238 |
| Msa0337040 | MtrunA17_Chr4g0025971 | 50.000 | 254 | 122 | 3 | 4 | 256 | 12 | 261 | 2.74e-77 | 235 |
| Msa0337040 | MtrunA17_Chr4g0025981 | 50.199 | 251 | 120 | 3 | 7 | 256 | 42 | 288 | 1.84e-75 | 232 |
| Msa0337040 | MtrunA17_Chr4g0044131 | 48.092 | 262 | 133 | 3 | 4 | 263 | 6 | 266 | 9.01e-74 | 226 |
| Msa0337040 | MtrunA17_Chr6g0463951 | 63.158 | 171 | 63 | 0 | 87 | 257 | 1 | 171 | 4.76e-72 | 218 |
| Msa0337040 | MtrunA17_Chr7g0268591 | 45.312 | 256 | 132 | 4 | 4 | 253 | 31 | 284 | 3.97e-71 | 220 |
| Msa0337040 | MtrunA17_Chr7g0252031 | 46.617 | 266 | 132 | 7 | 4 | 261 | 33 | 296 | 1.51e-70 | 219 |
| Msa0337040 | MtrunA17_Chr7g0267001 | 45.977 | 261 | 122 | 4 | 4 | 263 | 6 | 248 | 4.56e-64 | 201 |
| Msa0337040 | MtrunA17_Chr4g0040371 | 43.223 | 273 | 142 | 5 | 1 | 264 | 14 | 282 | 7.52e-64 | 201 |
| Msa0337040 | MtrunA17_Chr3g0084871 | 44.238 | 269 | 139 | 5 | 4 | 263 | 14 | 280 | 3.59e-63 | 199 |
| Msa0337040 | MtrunA17_Chr7g0267011 | 49.735 | 189 | 93 | 2 | 4 | 191 | 6 | 193 | 6.00e-55 | 175 |
| Msa0337040 | MtrunA17_Chr7g0270461 | 84.946 | 93 | 14 | 0 | 4 | 96 | 44 | 136 | 1.54e-50 | 162 |
| Msa0337040 | MtrunA17_Chr7g0266991 | 41.991 | 231 | 115 | 3 | 4 | 233 | 23 | 235 | 2.48e-49 | 162 |
| Msa0337040 | MtrunA17_Chr4g0044121 | 47.953 | 171 | 87 | 2 | 87 | 256 | 1 | 170 | 1.33e-44 | 148 |
| Msa0337040 | MtrunA17_Chr3g0142651 | 48.718 | 117 | 58 | 2 | 87 | 202 | 1 | 116 | 8.48e-31 | 111 |
| Msa0337040 | MtrunA17_Chr4g0028921 | 31.071 | 280 | 145 | 8 | 1 | 251 | 1 | 261 | 2.11e-25 | 101 |
| Msa0337040 | MtrunA17_Chr4g0028911 | 30.037 | 273 | 163 | 6 | 1 | 254 | 1 | 264 | 2.73e-22 | 93.2 |
| Msa0337040 | MtrunA17_Chr3g0122901 | 26.996 | 263 | 161 | 10 | 4 | 252 | 73 | 318 | 4.84e-21 | 90.5 |
| Msa0337040 | MtrunA17_Chr4g0074511 | 28.626 | 262 | 161 | 8 | 5 | 251 | 39 | 289 | 6.68e-21 | 89.7 |
| Msa0337040 | MtrunA17_Chr4g0075531 | 28.740 | 254 | 166 | 6 | 4 | 252 | 5 | 248 | 5.53e-20 | 86.3 |
| Msa0337040 | MtrunA17_Chr1g0191751 | 27.239 | 268 | 165 | 9 | 5 | 256 | 100 | 353 | 7.07e-20 | 87.8 |
| Msa0337040 | MtrunA17_Chr7g0272961 | 27.068 | 266 | 168 | 8 | 5 | 256 | 39 | 292 | 8.58e-20 | 86.7 |
| Msa0337040 | MtrunA17_Chr0c30g0494101 | 28.517 | 263 | 158 | 9 | 5 | 251 | 39 | 287 | 1.24e-18 | 83.2 |
| Msa0337040 | MtrunA17_Chr1g0171831 | 31.122 | 196 | 123 | 4 | 4 | 187 | 12 | 207 | 4.16e-16 | 75.9 |
| Msa0337040 | MtrunA17_Chr3g0112151 | 26.070 | 257 | 180 | 6 | 2 | 254 | 82 | 332 | 1.55e-15 | 75.1 |
| Msa0337040 | MtrunA17_Chr3g0112141 | 26.587 | 252 | 175 | 6 | 6 | 253 | 17 | 262 | 1.66e-15 | 74.3 |
| Msa0337040 | MtrunA17_Chr3g0112171 | 26.718 | 262 | 181 | 7 | 6 | 263 | 15 | 269 | 2.78e-15 | 73.6 |
| Msa0337040 | MtrunA17_Chr3g0112271 | 28.839 | 267 | 179 | 8 | 1 | 263 | 12 | 271 | 4.66e-15 | 73.2 |
| Msa0337040 | MtrunA17_Chr8g0357481 | 28.358 | 268 | 172 | 10 | 6 | 260 | 14 | 274 | 5.98e-15 | 73.2 |
| Msa0337040 | MtrunA17_Chr3g0112261 | 27.612 | 268 | 162 | 9 | 3 | 255 | 16 | 266 | 4.61e-14 | 70.5 |
| Msa0337040 | MtrunA17_Chr4g0045061 | 27.586 | 261 | 148 | 7 | 8 | 248 | 6 | 245 | 6.21e-14 | 71.2 |
| Msa0337040 | MtrunA17_Chr3g0124471 | 29.000 | 200 | 116 | 6 | 4 | 192 | 24 | 208 | 2.77e-13 | 68.6 |
| Msa0337040 | MtrunA17_Chr4g0054341 | 27.749 | 191 | 130 | 5 | 7 | 194 | 3 | 188 | 3.05e-13 | 68.2 |
| Msa0337040 | MtrunA17_Chr3g0124481 | 33.813 | 139 | 86 | 3 | 56 | 192 | 59 | 193 | 3.73e-13 | 67.8 |
| Msa0337040 | MtrunA17_Chr4g0045041 | 28.019 | 207 | 127 | 4 | 8 | 197 | 6 | 207 | 4.77e-13 | 68.6 |
| Msa0337040 | MtrunA17_Chr7g0259531 | 30.116 | 259 | 159 | 8 | 6 | 252 | 11 | 259 | 7.04e-13 | 67.0 |
| Msa0337040 | MtrunA17_Chr7g0239491 | 28.846 | 260 | 170 | 10 | 2 | 253 | 11 | 263 | 9.15e-13 | 66.6 |
| Msa0337040 | MtrunA17_Chr7g0239481 | 30.233 | 258 | 168 | 9 | 2 | 252 | 11 | 263 | 6.55e-12 | 63.9 |
| Msa0337040 | MtrunA17_Chr7g0239501 | 26.996 | 263 | 174 | 9 | 2 | 254 | 12 | 266 | 1.29e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337040 | AT2G47140.1 | 61.176 | 255 | 99 | 0 | 1 | 255 | 1 | 255 | 8.16e-112 | 323 |
| Msa0337040 | AT3G29250.2 | 58.984 | 256 | 105 | 0 | 1 | 256 | 1 | 256 | 7.11e-104 | 303 |
| Msa0337040 | AT3G29250.3 | 58.984 | 256 | 105 | 0 | 1 | 256 | 37 | 292 | 2.31e-103 | 303 |
| Msa0337040 | AT3G29250.1 | 58.661 | 254 | 105 | 0 | 3 | 256 | 41 | 294 | 1.96e-102 | 300 |
| Msa0337040 | AT2G47130.1 | 58.984 | 256 | 104 | 1 | 1 | 256 | 1 | 255 | 7.53e-102 | 297 |
| Msa0337040 | AT2G47120.1 | 56.641 | 256 | 109 | 2 | 1 | 256 | 1 | 254 | 1.07e-100 | 294 |
| Msa0337040 | AT2G47120.2 | 56.746 | 252 | 107 | 2 | 5 | 256 | 6 | 255 | 9.43e-100 | 292 |
| Msa0337040 | AT3G29260.1 | 58.203 | 256 | 106 | 1 | 1 | 256 | 1 | 255 | 1.74e-99 | 291 |
| Msa0337040 | AT3G51680.1 | 49.265 | 272 | 122 | 3 | 4 | 259 | 30 | 301 | 1.15e-77 | 238 |
| Msa0337040 | AT3G26770.1 | 43.866 | 269 | 137 | 6 | 4 | 261 | 39 | 304 | 2.23e-64 | 204 |
| Msa0337040 | AT4G03140.1 | 43.798 | 258 | 137 | 4 | 4 | 255 | 76 | 331 | 3.24e-63 | 202 |
| Msa0337040 | AT1G52340.1 | 45.693 | 267 | 127 | 6 | 4 | 256 | 16 | 278 | 5.88e-62 | 197 |
| Msa0337040 | AT3G26760.1 | 40.000 | 270 | 150 | 5 | 2 | 261 | 32 | 299 | 1.23e-61 | 196 |
| Msa0337040 | AT3G42960.1 | 43.820 | 267 | 126 | 4 | 2 | 253 | 4 | 261 | 1.47e-55 | 180 |
| Msa0337040 | AT2G47150.1 | 36.255 | 251 | 107 | 6 | 6 | 256 | 1 | 198 | 2.20e-37 | 131 |
| Msa0337040 | AT3G55290.2 | 28.897 | 263 | 158 | 5 | 6 | 251 | 17 | 267 | 6.44e-21 | 89.7 |
| Msa0337040 | AT3G55290.1 | 28.897 | 263 | 158 | 5 | 6 | 251 | 18 | 268 | 6.61e-21 | 89.7 |
| Msa0337040 | AT1G07450.1 | 29.502 | 261 | 167 | 8 | 1 | 254 | 3 | 253 | 2.81e-20 | 87.8 |
| Msa0337040 | AT1G62610.3 | 28.346 | 254 | 172 | 4 | 6 | 251 | 15 | 266 | 1.32e-19 | 86.3 |
| Msa0337040 | AT1G62610.2 | 28.346 | 254 | 172 | 4 | 6 | 251 | 13 | 264 | 1.42e-19 | 86.3 |
| Msa0337040 | AT1G62610.4 | 28.346 | 254 | 172 | 4 | 6 | 251 | 19 | 270 | 1.44e-19 | 86.3 |
| Msa0337040 | AT1G62610.1 | 28.346 | 254 | 172 | 4 | 6 | 251 | 14 | 265 | 1.51e-19 | 85.9 |
| Msa0337040 | AT2G29340.2 | 29.771 | 262 | 162 | 9 | 3 | 254 | 4 | 253 | 2.03e-19 | 85.5 |
| Msa0337040 | AT2G29340.1 | 29.771 | 262 | 162 | 9 | 3 | 254 | 4 | 253 | 2.71e-19 | 85.9 |
| Msa0337040 | AT2G29310.1 | 29.167 | 264 | 161 | 9 | 3 | 254 | 4 | 253 | 3.45e-19 | 84.7 |
| Msa0337040 | AT3G55310.1 | 28.679 | 265 | 156 | 6 | 6 | 251 | 17 | 267 | 9.60e-19 | 84.0 |
| Msa0337040 | AT3G46170.1 | 28.458 | 253 | 172 | 5 | 6 | 251 | 26 | 276 | 1.18e-18 | 83.6 |
| Msa0337040 | AT4G05530.1 | 32.016 | 253 | 159 | 7 | 4 | 252 | 7 | 250 | 1.32e-18 | 83.2 |
| Msa0337040 | AT1G63380.3 | 28.731 | 268 | 159 | 8 | 6 | 254 | 15 | 269 | 1.55e-18 | 83.2 |
| Msa0337040 | AT1G63380.4 | 28.731 | 268 | 159 | 8 | 6 | 254 | 19 | 273 | 1.65e-18 | 83.2 |
| Msa0337040 | AT1G63380.1 | 28.731 | 268 | 159 | 8 | 6 | 254 | 17 | 271 | 1.85e-18 | 83.2 |
| Msa0337040 | AT1G63380.2 | 28.731 | 268 | 159 | 8 | 6 | 254 | 22 | 276 | 1.96e-18 | 83.2 |
| Msa0337040 | AT1G24360.1 | 26.236 | 263 | 167 | 10 | 4 | 254 | 72 | 319 | 5.93e-18 | 82.4 |
| Msa0337040 | AT2G29150.1 | 29.572 | 257 | 170 | 9 | 2 | 254 | 12 | 261 | 6.67e-18 | 81.3 |
| Msa0337040 | AT2G17845.1 | 27.509 | 269 | 165 | 8 | 6 | 255 | 47 | 304 | 1.47e-17 | 80.9 |
| Msa0337040 | AT2G29290.2 | 28.906 | 256 | 172 | 7 | 3 | 254 | 4 | 253 | 3.97e-17 | 79.0 |
| Msa0337040 | AT2G30670.1 | 26.667 | 255 | 179 | 5 | 3 | 254 | 4 | 253 | 7.77e-17 | 78.2 |
| Msa0337040 | AT5G06060.1 | 30.153 | 262 | 161 | 9 | 3 | 254 | 6 | 255 | 1.20e-16 | 77.8 |
| Msa0337040 | AT1G54870.2 | 25.843 | 267 | 170 | 8 | 5 | 256 | 83 | 336 | 1.80e-16 | 78.2 |
| Msa0337040 | AT1G54870.1 | 25.843 | 267 | 170 | 8 | 5 | 256 | 81 | 334 | 1.87e-16 | 78.2 |
| Msa0337040 | AT1G07440.1 | 28.125 | 256 | 173 | 8 | 3 | 254 | 9 | 257 | 5.64e-16 | 75.9 |
| Msa0337040 | AT2G29370.1 | 28.788 | 264 | 174 | 9 | 3 | 260 | 13 | 268 | 6.65e-16 | 75.9 |
| Msa0337040 | AT2G29260.1 | 30.153 | 262 | 165 | 10 | 2 | 254 | 62 | 314 | 1.22e-15 | 75.9 |
| Msa0337040 | AT2G29350.1 | 28.405 | 257 | 173 | 8 | 2 | 254 | 11 | 260 | 1.35e-15 | 75.1 |
| Msa0337040 | AT2G29360.1 | 28.462 | 260 | 168 | 10 | 3 | 254 | 13 | 262 | 2.16e-15 | 74.3 |
| Msa0337040 | AT2G29340.3 | 31.156 | 199 | 126 | 7 | 3 | 195 | 4 | 197 | 2.35e-15 | 73.2 |
| Msa0337040 | AT2G29340.4 | 31.156 | 199 | 126 | 7 | 3 | 195 | 4 | 197 | 2.35e-15 | 73.2 |
| Msa0337040 | AT2G29290.1 | 28.500 | 200 | 137 | 4 | 56 | 254 | 42 | 236 | 9.79e-15 | 72.0 |
| Msa0337040 | AT3G12800.1 | 29.412 | 272 | 167 | 12 | 6 | 261 | 10 | 272 | 1.41e-14 | 72.4 |
| Msa0337040 | AT1G49670.2 | 30.493 | 223 | 124 | 7 | 8 | 210 | 6 | 217 | 2.35e-14 | 73.2 |
| Msa0337040 | AT1G49670.1 | 30.493 | 223 | 124 | 7 | 8 | 210 | 6 | 217 | 2.57e-14 | 72.8 |
| Msa0337040 | AT4G13180.1 | 31.801 | 261 | 156 | 10 | 6 | 254 | 13 | 263 | 6.03e-14 | 70.1 |
| Msa0337040 | AT1G10310.1 | 34.091 | 132 | 85 | 2 | 63 | 194 | 73 | 202 | 6.32e-14 | 69.7 |
| Msa0337040 | AT3G05260.1 | 25.000 | 264 | 172 | 7 | 5 | 254 | 36 | 287 | 1.05e-13 | 70.1 |
| Msa0337040 | AT2G29310.3 | 29.851 | 201 | 126 | 7 | 3 | 195 | 4 | 197 | 1.63e-13 | 68.2 |
| Msa0337040 | AT5G50770.1 | 29.319 | 191 | 127 | 5 | 1 | 187 | 40 | 226 | 8.82e-13 | 67.8 |
| Msa0337040 | AT2G29350.3 | 27.500 | 200 | 138 | 5 | 56 | 254 | 29 | 222 | 2.00e-12 | 65.5 |
| Msa0337040 | AT2G29350.2 | 29.293 | 198 | 133 | 6 | 2 | 195 | 11 | 205 | 3.54e-12 | 64.7 |
| Msa0337040 | AT2G29330.1 | 26.172 | 256 | 179 | 6 | 3 | 254 | 4 | 253 | 3.74e-12 | 65.1 |
| Msa0337040 | AT2G29310.2 | 27.234 | 235 | 145 | 9 | 32 | 254 | 31 | 251 | 6.63e-12 | 64.3 |
| Msa0337040 | AT5G18210.1 | 27.547 | 265 | 169 | 10 | 2 | 252 | 4 | 259 | 6.52e-11 | 61.6 |
Find 64 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGATAAATATTTGTATT+AGG | 0.216064 | 2_4:+56692230 | Msa0337040:three_prime_UTR |
| ATAAAATAAGCTATGTGATT+TGG | 0.275812 | 2_4:+56692161 | Msa0337040:three_prime_UTR |
| TGCAGTGAGCTTGGAGCTTA+TGG | 0.278067 | 2_4:+56691702 | Msa0337040:CDS |
| AGCAGATATCAATGATGAAT+TGG | 0.283540 | 2_4:+56691299 | Msa0337040:CDS |
| TGGTGTTGTCAAATTCATTT+AGG | 0.283555 | 2_4:-56691500 | None:intergenic |
| GCATCAAAACATGGTCTTAT+AGG | 0.284802 | 2_4:+56691663 | Msa0337040:CDS |
| CATCATCTTGCAAATTCAAT+AGG | 0.295890 | 2_4:+56691324 | Msa0337040:CDS |
| GTAAAGATATTCGTGGAAAA+TGG | 0.310172 | 2_4:+56691261 | Msa0337040:CDS |
| GATTACCCTCTCTTATTTAG+AGG | 0.331948 | 2_4:+56692262 | Msa0337040:three_prime_UTR |
| TACACTGGCAGTGCAAATTA+TGG | 0.353051 | 2_4:-56691601 | None:intergenic |
| TCATGATTATGCTAATTTGC+AGG | 0.357464 | 2_4:+56691818 | Msa0337040:CDS |
| GATGAATCTGCTTATGTTAG+TGG | 0.370705 | 2_4:+56691894 | Msa0337040:CDS |
| ATGGTCTTATAGGACTTGTT+AGG | 0.392057 | 2_4:+56691673 | Msa0337040:CDS |
| GCTTTCACGTTGGAGAGATA+TGG | 0.399630 | 2_4:+56691411 | Msa0337040:CDS |
| ACTGGGGCAGCAAGCGGAAT+AGG | 0.399759 | 2_4:+56691228 | Msa0337040:CDS |
| ACCAACAGCTTCAACTTCAC+TGG | 0.415009 | 2_4:-56691796 | None:intergenic |
| ATTTGCACTGCCAGTGTAGC+TGG | 0.419113 | 2_4:+56691606 | Msa0337040:CDS |
| ATTGCTGAACATGATGTCTA+AGG | 0.424678 | 2_4:-56691436 | None:intergenic |
| ATCATCTTGCAAATTCAATA+GGG | 0.425897 | 2_4:+56691325 | Msa0337040:CDS |
| TGATCATAGGTTGGAGGGTA+AGG | 0.428592 | 2_4:+56691194 | Msa0337040:intron |
| AATTCTAGTATGCTAGATAA+AGG | 0.435820 | 2_4:-56691474 | None:intergenic |
| GACATCATGTTCAGCAATGC+TGG | 0.459929 | 2_4:+56691441 | Msa0337040:CDS |
| GCAGATATCAATGATGAATT+GGG | 0.463215 | 2_4:+56691300 | Msa0337040:CDS |
| GTGGCTTCTCAGTCATTAAT+CGG | 0.474841 | 2_4:+56691937 | Msa0337040:CDS |
| TTCAGCAATGCTGGTAATGC+TGG | 0.487409 | 2_4:+56691450 | Msa0337040:CDS |
| TTTGCAGGGAATTACATTGA+AGG | 0.494365 | 2_4:+56691833 | Msa0337040:CDS |
| TTGATTGGTTGATATCATGA+AGG | 0.500774 | 2_4:-56692294 | None:intergenic |
| AGAGGTGTAGCAACAGCATA+AGG | 0.501265 | 2_4:-56691747 | None:intergenic |
| GGTAAGGTAGCTATAGTGAC+TGG | 0.506112 | 2_4:+56691210 | Msa0337040:CDS |
| GGACACAACTTGGTCGTTGA+TGG | 0.511755 | 2_4:+56691915 | Msa0337040:CDS |
| CATGATTATGCTAATTTGCA+GGG | 0.513662 | 2_4:+56691819 | Msa0337040:CDS |
| AGGTCAACATGCAGTGAGCT+TGG | 0.516394 | 2_4:+56691693 | Msa0337040:CDS |
| ATTACCCTCTCTTATTTAGA+GGG | 0.520676 | 2_4:+56692263 | Msa0337040:three_prime_UTR |
| ACCTCTTGCATGTAGAGCAC+TGG | 0.521993 | 2_4:+56691764 | Msa0337040:CDS |
| AGAGTGAATGATAGAGAAAG+CGG | 0.526417 | 2_4:-56692006 | None:intergenic |
| CAAGCATGCTGCACGTGTAA+TGG | 0.527529 | 2_4:+56691557 | Msa0337040:CDS |
| TGATTGGTTGATATCATGAA+GGG | 0.538572 | 2_4:-56692293 | None:intergenic |
| ACCAACAAAACCAGCTACAC+TGG | 0.550665 | 2_4:-56691616 | None:intergenic |
| TTATGTTAGTGGACACAACT+TGG | 0.559853 | 2_4:+56691905 | Msa0337040:CDS |
| ACCATGGCTGTGAACGTTCG+TGG | 0.565494 | 2_4:+56691519 | Msa0337040:CDS |
| CCAACAGCTTCAACTTCACT+GGG | 0.567306 | 2_4:-56691795 | None:intergenic |
| ACCACGAACGTTCACAGCCA+TGG | 0.577592 | 2_4:-56691520 | None:intergenic |
| AGAAGCAGTAAAGATATTCG+TGG | 0.578218 | 2_4:+56691254 | Msa0337040:CDS |
| AATCAAAATGTAATATACAT+TGG | 0.581083 | 2_4:+56692311 | Msa0337040:three_prime_UTR |
| GTAAGGTAGCTATAGTGACT+GGG | 0.582532 | 2_4:+56691211 | Msa0337040:CDS |
| GGATTAAACTTAGCAAGCAA+AGG | 0.586135 | 2_4:+56691012 | None:intergenic |
| CCCAGTGAAGTTGAAGCTGT+TGG | 0.588946 | 2_4:+56691795 | Msa0337040:CDS |
| CACAACTTGGTCGTTGATGG+TGG | 0.601290 | 2_4:+56691918 | Msa0337040:CDS |
| AAGGTTCATAACTCAAAGCA+AGG | 0.606203 | 2_4:+56691031 | Msa0337040:five_prime_UTR |
| TCCAGTGCTCTACATGCAAG+AGG | 0.608317 | 2_4:-56691765 | None:intergenic |
| ATAGTGACTGGGGCAGCAAG+CGG | 0.610587 | 2_4:+56691222 | Msa0337040:CDS |
| AATCATCAATGTCAAAACAA+AGG | 0.610813 | 2_4:+56691065 | Msa0337040:exon |
| AAATACCCTCTAAATAAGAG+AGG | 0.622280 | 2_4:-56692268 | None:intergenic |
| GGAAATTGTTGCTTTCACGT+TGG | 0.626510 | 2_4:+56691401 | Msa0337040:CDS |
| TGCATGTAGAGCACTGGACA+TGG | 0.628198 | 2_4:+56691770 | Msa0337040:CDS |
| GCATGCTGCACGTGTAATGG+TGG | 0.633944 | 2_4:+56691560 | Msa0337040:CDS |
| GAGAGATGAGAAACAAGTTG+AGG | 0.635217 | 2_4:+56691380 | Msa0337040:CDS |
| GATTGGTTGATATCATGAAG+GGG | 0.636271 | 2_4:-56692292 | None:intergenic |
| AATACCCTCTAAATAAGAGA+GGG | 0.643015 | 2_4:-56692267 | None:intergenic |
| GATTATACAGCATCAAAACA+TGG | 0.649473 | 2_4:+56691654 | Msa0337040:CDS |
| CATCTCTCACGTCACAGTGG+TGG | 0.650693 | 2_4:-56691365 | None:intergenic |
| AAATGAATTTGACAACACCA+TGG | 0.674818 | 2_4:+56691503 | Msa0337040:CDS |
| TCTCATCTCTCACGTCACAG+TGG | 0.689905 | 2_4:-56691368 | None:intergenic |
| TAAGGTAGCTATAGTGACTG+GGG | 0.695873 | 2_4:+56691212 | Msa0337040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTATGATCAT+AGG | + | chr2_4:56691181-56691200 | Msa0337040:intron | 10.0% |
| !!! | TTAATATTTTTTCTCTTATT+CGG | - | chr2_4:56692106-56692125 | None:intergenic | 10.0% |
| !! | AAATGATAAATATTTGTATT+AGG | + | chr2_4:56692230-56692249 | Msa0337040:three_prime_UTR | 10.0% |
| !!! | ATATTTTATTTTATGATCAT+AGG | + | chr2_4:56691181-56691200 | Msa0337040:intron | 10.0% |
| !!! | TTAATATTTTTTCTCTTATT+CGG | - | chr2_4:56692106-56692125 | None:intergenic | 10.0% |
| !! | AAATGATAAATATTTGTATT+AGG | + | chr2_4:56692230-56692249 | Msa0337040:three_prime_UTR | 10.0% |
| !!! | AGTTATCATTTTTTAATACT+AGG | - | chr2_4:56691969-56691988 | None:intergenic | 15.0% |
| !!! | AATGTATATTACATTTTGAT+TGG | - | chr2_4:56692312-56692331 | None:intergenic | 15.0% |
| !! | AATCAAAATGTAATATACAT+TGG | + | chr2_4:56692311-56692330 | Msa0337040:three_prime_UTR | 15.0% |
| !!! | AGTTATCATTTTTTAATACT+AGG | - | chr2_4:56691969-56691988 | None:intergenic | 15.0% |
| !!! | AATGTATATTACATTTTGAT+TGG | - | chr2_4:56692312-56692331 | None:intergenic | 15.0% |
| !! | AATCAAAATGTAATATACAT+TGG | + | chr2_4:56692311-56692330 | Msa0337040:three_prime_UTR | 15.0% |
| !! | TGTTATAAGCCAATATAAAT+AGG | - | chr2_4:56691147-56691166 | None:intergenic | 20.0% |
| !!! | TTTATTTTATGATCATAGGT+TGG | + | chr2_4:56691185-56691204 | Msa0337040:intron | 20.0% |
| !! | ATAAAATAAGCTATGTGATT+TGG | + | chr2_4:56692161-56692180 | Msa0337040:three_prime_UTR | 20.0% |
| !! | TGTTATAAGCCAATATAAAT+AGG | - | chr2_4:56691147-56691166 | None:intergenic | 20.0% |
| !!! | TTTATTTTATGATCATAGGT+TGG | + | chr2_4:56691185-56691204 | Msa0337040:intron | 20.0% |
| !! | ATAAAATAAGCTATGTGATT+TGG | + | chr2_4:56692161-56692180 | Msa0337040:three_prime_UTR | 20.0% |
| ! | AATCATCAATGTCAAAACAA+AGG | + | chr2_4:56691065-56691084 | Msa0337040:exon | 25.0% |
| ! | ATCATCTTGCAAATTCAATA+GGG | + | chr2_4:56691325-56691344 | Msa0337040:CDS | 25.0% |
| ! | AATTCTAGTATGCTAGATAA+AGG | - | chr2_4:56691477-56691496 | None:intergenic | 25.0% |
| ! | AATCATCAATGTCAAAACAA+AGG | + | chr2_4:56691065-56691084 | Msa0337040:exon | 25.0% |
| ! | ATCATCTTGCAAATTCAATA+GGG | + | chr2_4:56691325-56691344 | Msa0337040:CDS | 25.0% |
| ! | AATTCTAGTATGCTAGATAA+AGG | - | chr2_4:56691477-56691496 | None:intergenic | 25.0% |
| CAGTGTCTACCTATTTATAT+TGG | + | chr2_4:56691135-56691154 | Msa0337040:intron | 30.0% | |
| !! | ATTTTATGATCATAGGTTGG+AGG | + | chr2_4:56691188-56691207 | Msa0337040:intron | 30.0% |
| !! | TTTTATGATCATAGGTTGGA+GGG | + | chr2_4:56691189-56691208 | Msa0337040:intron | 30.0% |
| GTAAAGATATTCGTGGAAAA+TGG | + | chr2_4:56691261-56691280 | Msa0337040:CDS | 30.0% | |
| AGCAGATATCAATGATGAAT+TGG | + | chr2_4:56691299-56691318 | Msa0337040:CDS | 30.0% | |
| GCAGATATCAATGATGAATT+GGG | + | chr2_4:56691300-56691319 | Msa0337040:CDS | 30.0% | |
| CATCATCTTGCAAATTCAAT+AGG | + | chr2_4:56691324-56691343 | Msa0337040:CDS | 30.0% | |
| !! | TGGTGTTGTCAAATTCATTT+AGG | - | chr2_4:56691503-56691522 | None:intergenic | 30.0% |
| AAATGAATTTGACAACACCA+TGG | + | chr2_4:56691503-56691522 | Msa0337040:CDS | 30.0% | |
| GATTATACAGCATCAAAACA+TGG | + | chr2_4:56691654-56691673 | Msa0337040:CDS | 30.0% | |
| ! | TCATGATTATGCTAATTTGC+AGG | + | chr2_4:56691818-56691837 | Msa0337040:CDS | 30.0% |
| ! | CATGATTATGCTAATTTGCA+GGG | + | chr2_4:56691819-56691838 | Msa0337040:CDS | 30.0% |
| !!! | AACGTTCTTCTTTTTTTGAG+AGG | + | chr2_4:56692199-56692218 | Msa0337040:three_prime_UTR | 30.0% |
| ! | ATTACCCTCTCTTATTTAGA+GGG | + | chr2_4:56692263-56692282 | Msa0337040:three_prime_UTR | 30.0% |
| AATACCCTCTAAATAAGAGA+GGG | - | chr2_4:56692270-56692289 | None:intergenic | 30.0% | |
| AAATACCCTCTAAATAAGAG+AGG | - | chr2_4:56692271-56692290 | None:intergenic | 30.0% | |
| ! | TGATTGGTTGATATCATGAA+GGG | - | chr2_4:56692296-56692315 | None:intergenic | 30.0% |
| ! | TTGATTGGTTGATATCATGA+AGG | - | chr2_4:56692297-56692316 | None:intergenic | 30.0% |
| CAGTGTCTACCTATTTATAT+TGG | + | chr2_4:56691135-56691154 | Msa0337040:intron | 30.0% | |
| !! | ATTTTATGATCATAGGTTGG+AGG | + | chr2_4:56691188-56691207 | Msa0337040:intron | 30.0% |
| !! | TTTTATGATCATAGGTTGGA+GGG | + | chr2_4:56691189-56691208 | Msa0337040:intron | 30.0% |
| GTAAAGATATTCGTGGAAAA+TGG | + | chr2_4:56691261-56691280 | Msa0337040:CDS | 30.0% | |
| AGCAGATATCAATGATGAAT+TGG | + | chr2_4:56691299-56691318 | Msa0337040:CDS | 30.0% | |
| GCAGATATCAATGATGAATT+GGG | + | chr2_4:56691300-56691319 | Msa0337040:CDS | 30.0% | |
| CATCATCTTGCAAATTCAAT+AGG | + | chr2_4:56691324-56691343 | Msa0337040:CDS | 30.0% | |
| !! | TGGTGTTGTCAAATTCATTT+AGG | - | chr2_4:56691503-56691522 | None:intergenic | 30.0% |
| AAATGAATTTGACAACACCA+TGG | + | chr2_4:56691503-56691522 | Msa0337040:CDS | 30.0% | |
| GATTATACAGCATCAAAACA+TGG | + | chr2_4:56691654-56691673 | Msa0337040:CDS | 30.0% | |
| ! | TCATGATTATGCTAATTTGC+AGG | + | chr2_4:56691818-56691837 | Msa0337040:CDS | 30.0% |
| ! | CATGATTATGCTAATTTGCA+GGG | + | chr2_4:56691819-56691838 | Msa0337040:CDS | 30.0% |
| !!! | AACGTTCTTCTTTTTTTGAG+AGG | + | chr2_4:56692199-56692218 | Msa0337040:three_prime_UTR | 30.0% |
| ! | ATTACCCTCTCTTATTTAGA+GGG | + | chr2_4:56692263-56692282 | Msa0337040:three_prime_UTR | 30.0% |
| AATACCCTCTAAATAAGAGA+GGG | - | chr2_4:56692270-56692289 | None:intergenic | 30.0% | |
| AAATACCCTCTAAATAAGAG+AGG | - | chr2_4:56692271-56692290 | None:intergenic | 30.0% | |
| ! | TGATTGGTTGATATCATGAA+GGG | - | chr2_4:56692296-56692315 | None:intergenic | 30.0% |
| ! | TTGATTGGTTGATATCATGA+AGG | - | chr2_4:56692297-56692316 | None:intergenic | 30.0% |
| AAGGTTCATAACTCAAAGCA+AGG | + | chr2_4:56691031-56691050 | Msa0337040:five_prime_UTR | 35.0% | |
| AGAAGCAGTAAAGATATTCG+TGG | + | chr2_4:56691254-56691273 | Msa0337040:CDS | 35.0% | |
| ATTGCTGAACATGATGTCTA+AGG | - | chr2_4:56691439-56691458 | None:intergenic | 35.0% | |
| ! | ATGGTGGAAAGAAAAATACG+TGG | + | chr2_4:56691576-56691595 | Msa0337040:CDS | 35.0% |
| !! | GCATCAAAACATGGTCTTAT+AGG | + | chr2_4:56691663-56691682 | Msa0337040:CDS | 35.0% |
| !! | ATGGTCTTATAGGACTTGTT+AGG | + | chr2_4:56691673-56691692 | Msa0337040:CDS | 35.0% |
| TTTGCAGGGAATTACATTGA+AGG | + | chr2_4:56691833-56691852 | Msa0337040:CDS | 35.0% | |
| GATGAATCTGCTTATGTTAG+TGG | + | chr2_4:56691894-56691913 | Msa0337040:CDS | 35.0% | |
| ! | TTATGTTAGTGGACACAACT+TGG | + | chr2_4:56691905-56691924 | Msa0337040:CDS | 35.0% |
| AGAGTGAATGATAGAGAAAG+CGG | - | chr2_4:56692009-56692028 | None:intergenic | 35.0% | |
| ! | GATTACCCTCTCTTATTTAG+AGG | + | chr2_4:56692262-56692281 | Msa0337040:three_prime_UTR | 35.0% |
| ! | GATTGGTTGATATCATGAAG+GGG | - | chr2_4:56692295-56692314 | None:intergenic | 35.0% |
| AAGGTTCATAACTCAAAGCA+AGG | + | chr2_4:56691031-56691050 | Msa0337040:five_prime_UTR | 35.0% | |
| AGAAGCAGTAAAGATATTCG+TGG | + | chr2_4:56691254-56691273 | Msa0337040:CDS | 35.0% | |
| ATTGCTGAACATGATGTCTA+AGG | - | chr2_4:56691439-56691458 | None:intergenic | 35.0% | |
| ! | ATGGTGGAAAGAAAAATACG+TGG | + | chr2_4:56691576-56691595 | Msa0337040:CDS | 35.0% |
| !! | GCATCAAAACATGGTCTTAT+AGG | + | chr2_4:56691663-56691682 | Msa0337040:CDS | 35.0% |
| !! | ATGGTCTTATAGGACTTGTT+AGG | + | chr2_4:56691673-56691692 | Msa0337040:CDS | 35.0% |
| TTTGCAGGGAATTACATTGA+AGG | + | chr2_4:56691833-56691852 | Msa0337040:CDS | 35.0% | |
| GATGAATCTGCTTATGTTAG+TGG | + | chr2_4:56691894-56691913 | Msa0337040:CDS | 35.0% | |
| ! | TTATGTTAGTGGACACAACT+TGG | + | chr2_4:56691905-56691924 | Msa0337040:CDS | 35.0% |
| AGAGTGAATGATAGAGAAAG+CGG | - | chr2_4:56692009-56692028 | None:intergenic | 35.0% | |
| ! | GATTACCCTCTCTTATTTAG+AGG | + | chr2_4:56692262-56692281 | Msa0337040:three_prime_UTR | 35.0% |
| ! | GATTGGTTGATATCATGAAG+GGG | - | chr2_4:56692295-56692314 | None:intergenic | 35.0% |
| CACTGTACTAGCTAGAAAGA+GGG | - | chr2_4:56691120-56691139 | None:intergenic | 40.0% | |
| ACACTGTACTAGCTAGAAAG+AGG | - | chr2_4:56691121-56691140 | None:intergenic | 40.0% | |
| GTAAGGTAGCTATAGTGACT+GGG | + | chr2_4:56691211-56691230 | Msa0337040:CDS | 40.0% | |
| TAAGGTAGCTATAGTGACTG+GGG | + | chr2_4:56691212-56691231 | Msa0337040:CDS | 40.0% | |
| GAGAGATGAGAAACAAGTTG+AGG | + | chr2_4:56691380-56691399 | Msa0337040:CDS | 40.0% | |
| !! | GGAAATTGTTGCTTTCACGT+TGG | + | chr2_4:56691401-56691420 | Msa0337040:CDS | 40.0% |
| TACACTGGCAGTGCAAATTA+TGG | - | chr2_4:56691604-56691623 | None:intergenic | 40.0% | |
| GTGGCTTCTCAGTCATTAAT+CGG | + | chr2_4:56691937-56691956 | Msa0337040:CDS | 40.0% | |
| CACTGTACTAGCTAGAAAGA+GGG | - | chr2_4:56691120-56691139 | None:intergenic | 40.0% | |
| ACACTGTACTAGCTAGAAAG+AGG | - | chr2_4:56691121-56691140 | None:intergenic | 40.0% | |
| GTAAGGTAGCTATAGTGACT+GGG | + | chr2_4:56691211-56691230 | Msa0337040:CDS | 40.0% | |
| TAAGGTAGCTATAGTGACTG+GGG | + | chr2_4:56691212-56691231 | Msa0337040:CDS | 40.0% | |
| GAGAGATGAGAAACAAGTTG+AGG | + | chr2_4:56691380-56691399 | Msa0337040:CDS | 40.0% | |
| !! | GGAAATTGTTGCTTTCACGT+TGG | + | chr2_4:56691401-56691420 | Msa0337040:CDS | 40.0% |
| TACACTGGCAGTGCAAATTA+TGG | - | chr2_4:56691604-56691623 | None:intergenic | 40.0% | |
| GTGGCTTCTCAGTCATTAAT+CGG | + | chr2_4:56691937-56691956 | Msa0337040:CDS | 40.0% | |
| ! | TGATCATAGGTTGGAGGGTA+AGG | + | chr2_4:56691194-56691213 | Msa0337040:intron | 45.0% |
| GGTAAGGTAGCTATAGTGAC+TGG | + | chr2_4:56691210-56691229 | Msa0337040:CDS | 45.0% | |
| GCTTTCACGTTGGAGAGATA+TGG | + | chr2_4:56691411-56691430 | Msa0337040:CDS | 45.0% | |
| GACATCATGTTCAGCAATGC+TGG | + | chr2_4:56691441-56691460 | Msa0337040:CDS | 45.0% | |
| ! | TTCAGCAATGCTGGTAATGC+TGG | + | chr2_4:56691450-56691469 | Msa0337040:CDS | 45.0% |
| ACCAACAAAACCAGCTACAC+TGG | - | chr2_4:56691619-56691638 | None:intergenic | 45.0% | |
| !!! | AGTGTAGCTGGTTTTGTTGG+TGG | + | chr2_4:56691618-56691637 | Msa0337040:CDS | 45.0% |
| ! | AGAGGTGTAGCAACAGCATA+AGG | - | chr2_4:56691750-56691769 | None:intergenic | 45.0% |
| CCAACAGCTTCAACTTCACT+GGG | - | chr2_4:56691798-56691817 | None:intergenic | 45.0% | |
| ACCAACAGCTTCAACTTCAC+TGG | - | chr2_4:56691799-56691818 | None:intergenic | 45.0% | |
| ! | TGATCATAGGTTGGAGGGTA+AGG | + | chr2_4:56691194-56691213 | Msa0337040:intron | 45.0% |
| GGTAAGGTAGCTATAGTGAC+TGG | + | chr2_4:56691210-56691229 | Msa0337040:CDS | 45.0% | |
| GCTTTCACGTTGGAGAGATA+TGG | + | chr2_4:56691411-56691430 | Msa0337040:CDS | 45.0% | |
| GACATCATGTTCAGCAATGC+TGG | + | chr2_4:56691441-56691460 | Msa0337040:CDS | 45.0% | |
| ! | TTCAGCAATGCTGGTAATGC+TGG | + | chr2_4:56691450-56691469 | Msa0337040:CDS | 45.0% |
| ACCAACAAAACCAGCTACAC+TGG | - | chr2_4:56691619-56691638 | None:intergenic | 45.0% | |
| !!! | AGTGTAGCTGGTTTTGTTGG+TGG | + | chr2_4:56691618-56691637 | Msa0337040:CDS | 45.0% |
| ! | AGAGGTGTAGCAACAGCATA+AGG | - | chr2_4:56691750-56691769 | None:intergenic | 45.0% |
| CCAACAGCTTCAACTTCACT+GGG | - | chr2_4:56691798-56691817 | None:intergenic | 45.0% | |
| ACCAACAGCTTCAACTTCAC+TGG | - | chr2_4:56691799-56691818 | None:intergenic | 45.0% | |
| TCTCATCTCTCACGTCACAG+TGG | - | chr2_4:56691371-56691390 | None:intergenic | 50.0% | |
| CAAGCATGCTGCACGTGTAA+TGG | + | chr2_4:56691557-56691576 | Msa0337040:CDS | 50.0% | |
| ATTTGCACTGCCAGTGTAGC+TGG | + | chr2_4:56691606-56691625 | Msa0337040:CDS | 50.0% | |
| !!! | GCCAGTGTAGCTGGTTTTGT+TGG | + | chr2_4:56691615-56691634 | Msa0337040:CDS | 50.0% |
| !!! | GGTTTTGTTGGTGGATGTGC+AGG | + | chr2_4:56691627-56691646 | Msa0337040:CDS | 50.0% |
| AGGTCAACATGCAGTGAGCT+TGG | + | chr2_4:56691693-56691712 | Msa0337040:CDS | 50.0% | |
| TGCAGTGAGCTTGGAGCTTA+TGG | + | chr2_4:56691702-56691721 | Msa0337040:CDS | 50.0% | |
| ACCTCTTGCATGTAGAGCAC+TGG | + | chr2_4:56691764-56691783 | Msa0337040:CDS | 50.0% | |
| TCCAGTGCTCTACATGCAAG+AGG | - | chr2_4:56691768-56691787 | None:intergenic | 50.0% | |
| !! | TGCATGTAGAGCACTGGACA+TGG | + | chr2_4:56691770-56691789 | Msa0337040:CDS | 50.0% |
| CCCAGTGAAGTTGAAGCTGT+TGG | + | chr2_4:56691795-56691814 | Msa0337040:CDS | 50.0% | |
| GGACACAACTTGGTCGTTGA+TGG | + | chr2_4:56691915-56691934 | Msa0337040:CDS | 50.0% | |
| ! | CACAACTTGGTCGTTGATGG+TGG | + | chr2_4:56691918-56691937 | Msa0337040:CDS | 50.0% |
| TCTCATCTCTCACGTCACAG+TGG | - | chr2_4:56691371-56691390 | None:intergenic | 50.0% | |
| CAAGCATGCTGCACGTGTAA+TGG | + | chr2_4:56691557-56691576 | Msa0337040:CDS | 50.0% | |
| ATTTGCACTGCCAGTGTAGC+TGG | + | chr2_4:56691606-56691625 | Msa0337040:CDS | 50.0% | |
| !!! | GCCAGTGTAGCTGGTTTTGT+TGG | + | chr2_4:56691615-56691634 | Msa0337040:CDS | 50.0% |
| !!! | GGTTTTGTTGGTGGATGTGC+AGG | + | chr2_4:56691627-56691646 | Msa0337040:CDS | 50.0% |
| AGGTCAACATGCAGTGAGCT+TGG | + | chr2_4:56691693-56691712 | Msa0337040:CDS | 50.0% | |
| TGCAGTGAGCTTGGAGCTTA+TGG | + | chr2_4:56691702-56691721 | Msa0337040:CDS | 50.0% | |
| ACCTCTTGCATGTAGAGCAC+TGG | + | chr2_4:56691764-56691783 | Msa0337040:CDS | 50.0% | |
| TCCAGTGCTCTACATGCAAG+AGG | - | chr2_4:56691768-56691787 | None:intergenic | 50.0% | |
| !! | TGCATGTAGAGCACTGGACA+TGG | + | chr2_4:56691770-56691789 | Msa0337040:CDS | 50.0% |
| CCCAGTGAAGTTGAAGCTGT+TGG | + | chr2_4:56691795-56691814 | Msa0337040:CDS | 50.0% | |
| GGACACAACTTGGTCGTTGA+TGG | + | chr2_4:56691915-56691934 | Msa0337040:CDS | 50.0% | |
| ! | CACAACTTGGTCGTTGATGG+TGG | + | chr2_4:56691918-56691937 | Msa0337040:CDS | 50.0% |
| ATAGTGACTGGGGCAGCAAG+CGG | + | chr2_4:56691222-56691241 | Msa0337040:CDS | 55.0% | |
| CATCTCTCACGTCACAGTGG+TGG | - | chr2_4:56691368-56691387 | None:intergenic | 55.0% | |
| ACCATGGCTGTGAACGTTCG+TGG | + | chr2_4:56691519-56691538 | Msa0337040:CDS | 55.0% | |
| ACCACGAACGTTCACAGCCA+TGG | - | chr2_4:56691523-56691542 | None:intergenic | 55.0% | |
| GCATGCTGCACGTGTAATGG+TGG | + | chr2_4:56691560-56691579 | Msa0337040:CDS | 55.0% | |
| ATAGTGACTGGGGCAGCAAG+CGG | + | chr2_4:56691222-56691241 | Msa0337040:CDS | 55.0% | |
| CATCTCTCACGTCACAGTGG+TGG | - | chr2_4:56691368-56691387 | None:intergenic | 55.0% | |
| ACCATGGCTGTGAACGTTCG+TGG | + | chr2_4:56691519-56691538 | Msa0337040:CDS | 55.0% | |
| ACCACGAACGTTCACAGCCA+TGG | - | chr2_4:56691523-56691542 | None:intergenic | 55.0% | |
| GCATGCTGCACGTGTAATGG+TGG | + | chr2_4:56691560-56691579 | Msa0337040:CDS | 55.0% | |
| ACTGGGGCAGCAAGCGGAAT+AGG | + | chr2_4:56691228-56691247 | Msa0337040:CDS | 60.0% | |
| ACTGGGGCAGCAAGCGGAAT+AGG | + | chr2_4:56691228-56691247 | Msa0337040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 56691023 | 56692334 | 56691023 | ID=Msa0337040;Name=Msa0337040 |
| chr2_4 | mRNA | 56691023 | 56692334 | 56691023 | ID=Msa0337040-mRNA-1;Parent=Msa0337040;Name=Msa0337040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=50|1|1|1|1|1|2|351|264 |
| chr2_4 | exon | 56691023 | 56691086 | 56691023 | ID=Msa0337040-mRNA-1:exon:17301;Parent=Msa0337040-mRNA-1 |
| chr2_4 | exon | 56691203 | 56692334 | 56691203 | ID=Msa0337040-mRNA-1:exon:17302;Parent=Msa0337040-mRNA-1 |
| chr2_4 | five_prime_UTR | 56691023 | 56691072 | 56691023 | ID=Msa0337040-mRNA-1:five_prime_utr;Parent=Msa0337040-mRNA-1 |
| chr2_4 | CDS | 56691073 | 56691086 | 56691073 | ID=Msa0337040-mRNA-1:cds;Parent=Msa0337040-mRNA-1 |
| chr2_4 | CDS | 56691203 | 56691983 | 56691203 | ID=Msa0337040-mRNA-1:cds;Parent=Msa0337040-mRNA-1 |
| chr2_4 | three_prime_UTR | 56691984 | 56692334 | 56691984 | ID=Msa0337040-mRNA-1:three_prime_utr;Parent=Msa0337040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
