AlfalfaGEDB | Msa0682550

M. sativa cultivar zhongmu-4 / Msa0682550

KEGG: K19613
GO: -
PFAM: PF00931.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0682550	XP_003604979.1	75.752	565	80	5	1	510	183	745	0.0	806

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0682550	sp\|Q7XBQ9\|RGA2_SOLBU	34.470	557	258	14	3	498	173	683	1.95e-83	281

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0682550	G7JUK2	75.752	565	80	5	1	510	183	745	0.0	806

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0682550	-0.828973	6.674324e-55	-8.615850e-47
Msa0003890	Msa0682550	0.821693	3.525222e-53	-8.615850e-47
Msa0004880	Msa0682550	0.858759	6.607952e-63	-8.615850e-47
Msa0004920	Msa0682550	0.805324	1.410402e-49	-8.615850e-47
Msa0006110	Msa0682550	0.824231	9.030472e-54	-8.615850e-47
Msa0006390	Msa0682550	0.823571	1.289701e-53	-8.615850e-47
Msa0007080	Msa0682550	0.826156	3.166233e-54	-8.615850e-47
Msa0008670	Msa0682550	0.814731	1.326683e-51	-8.615850e-47
Msa0011170	Msa0682550	0.822648	2.117398e-53	-8.615850e-47
Msa0011500	Msa0682550	0.830332	3.117826e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0682550	MtrunA17_Chr4g0010201	75.752	565	80	5	1	510	183	745	0.0	806
Msa0682550	MtrunA17_Chr4g0009781	74.159	565	90	4	1	510	183	746	0.0	788
Msa0682550	MtrunA17_Chr4g0010251	71.898	548	93	5	18	510	200	741	0.0	739
Msa0682550	MtrunA17_Chr4g0010221	71.809	564	103	4	1	510	183	744	0.0	736
Msa0682550	MtrunA17_Chr4g0010261	69.965	566	112	6	1	510	183	746	0.0	723
Msa0682550	MtrunA17_Chr4g0010491	89.431	246	26	0	1	246	183	428	6.95e-145	422
Msa0682550	MtrunA17_Chr3g0082881	43.580	553	237	10	4	498	183	718	6.47e-137	416
Msa0682550	MtrunA17_Chr3g0082891	43.219	553	236	9	4	497	183	716	1.51e-136	415
Msa0682550	MtrunA17_Chr3g0082871	44.213	527	222	10	4	474	183	693	1.28e-134	406
Msa0682550	MtrunA17_Chr8g0355071	73.507	268	64	2	28	288	28	295	1.39e-133	389

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0682550	AT3G14460.1	33.155	561	293	16	6	503	194	735	3.34e-74	256
Msa0682550	AT3G14470.1	30.796	565	314	15	5	507	196	745	2.19e-73	251
Msa0682550	AT3G14470.2	30.796	565	314	15	5	507	196	745	2.19e-73	251
Msa0682550	AT3G07040.1	29.039	458	277	13	7	436	195	632	5.33e-49	181
Msa0682550	AT3G50950.2	31.677	322	206	8	7	317	184	502	2.15e-46	174
Msa0682550	AT3G50950.1	31.677	322	206	8	7	317	184	502	2.15e-46	174
Msa0682550	AT1G59124.1	29.555	494	290	18	4	461	182	653	5.12e-44	167
Msa0682550	AT1G58807.2	29.555	494	290	18	4	461	182	653	5.12e-44	167
Msa0682550	AT1G59218.1	29.140	477	292	16	4	445	182	647	5.33e-44	167
Msa0682550	AT1G59218.2	29.140	477	292	16	4	445	182	647	5.33e-44	167

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Find 86 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACATTGATTCGACTT+TGG	0.397385	4_4:-44231792	Msa0682550:CDS
AAATAGTGAACAAATGTTCA+GGG	0.532050	4_4:-44232029	Msa0682550:CDS
AACAAACACACTGTTGGTGA+TGG	0.624768	4_4:-44231037	Msa0682550:CDS
AAGAAACTTCGTTGATATTT+TGG	0.145485	4_4:+44231674	None:intergenic
AAGAAGATATTTGCTTGTCT+TGG	0.390625	4_4:-44232295	Msa0682550:CDS
AAGAGAAGTTGGAACTTGCC+AGG	0.481440	4_4:+44231498	None:intergenic
AAGTTAAATTAAGATACCTT+AGG	0.496597	4_4:+44231287	None:intergenic
AATAGTGAACAAATGTTCAG+GGG	0.654902	4_4:-44232028	Msa0682550:CDS
AATGAGGAATTGGTGCCAAT+TGG	0.468811	4_4:-44232057	Msa0682550:CDS
AATGTATTCCATGCCGAAGG+AGG	0.607911	4_4:-44231974	Msa0682550:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGATGGATAAAGTTCAAT+TGG	-	chr4_4:44231200-44231219	Msa0682550:CDS	30.0%
AAGAAGATATTTGCTTGTCT+TGG	-	chr4_4:44231245-44231264	Msa0682550:CDS	30.0%
GTCTAGATGAAAAACAATCT+TGG	-	chr4_4:44231415-44231434	Msa0682550:CDS	30.0%
GAAATAGTGAACAAATGTTC+AGG	-	chr4_4:44231510-44231529	Msa0682550:CDS	30.0%
AATAGTGAACAAATGTTCAG+GGG	-	chr4_4:44231512-44231531	Msa0682550:CDS	30.0%
ACTTTGAATTTGATTCTTCC+TGG	-	chr4_4:44232024-44232043	Msa0682550:CDS	30.0%
CTTTCTATTACCACAACATT+CGG	-	chr4_4:44232088-44232107	Msa0682550:CDS	30.0%
CCTAAATAGAAATAAGTCCT+TGG	+	chr4_4:44232116-44232135	None:intergenic	30.0%
ATCTTAACCGCATAAATTCA+AGG	-	chr4_4:44232198-44232217	Msa0682550:CDS	30.0%
GAATCTTCCTTGAATTTATG+CGG	+	chr4_4:44232208-44232227	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	44231012	44232550	44231012	ID=Msa0682550;Name=Msa0682550
chr4_4	mRNA	44231012	44232550	44231012	ID=Msa0682550-mRNA-1;Parent=Msa0682550;Name=Msa0682550-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|512
chr4_4	exon	44231012	44232550	44231012	ID=Msa0682550-mRNA-1:exon:10721;Parent=Msa0682550-mRNA-1
chr4_4	CDS	44231012	44232550	44231012	ID=Msa0682550-mRNA-1:cds;Parent=Msa0682550-mRNA-1

Gene Sequence

>Msa0682550

ATGAAAGAGAATGTTTCAGTTATTTCTATAATTGGAATTGGAGGACTTATAAAGACTGCGCTTGCTCAACTTGTATACGGTGACAGAAAAGTGCAACAACATTTTGAGTTGAAAAAATGGGTTTGCGTTTCTGATGATTTTGATGTAAAAGGTATTGCTTCAAAGATCATAGAATCTAAAACTAATGTTGAGATGGATAAAGTTCAATTGGAACTCCGTGAAAAAGTTGAAGGAAGAAGATATTTGCTTGTCTTGGATGACAATTGGAATGAGGATCGTGATCTTTGGCTTCAATTGATGACTTTGCTTAAAGGCGGAGCAAAAGGAAGTAAAATAATTATCACCACGAGAAGTGAGAAGGTTTCCAAGGCAAGTGGTGCATCTTCTATCTTCAATTTAAAGGGTCTAGATGAAAAACAATCTTGGAGATTATTTAGTCAATTAGCTTTTGAGAATGACAAAGAACTAGAGAATGAGGAATTGGTGCCAATTGGCAAGGAAATAGTGAACAAATGTTCAGGGGTTCCTCTCGCCATTAGAAGCATTGGAAGCTTAATGTATTCCATGCCGAAGGAGGATTGGTCAACATTCAAGATCAAAGATCTTATGAAAATTGATGAACAAGGTGATGAGAAAATTTTCCAGCTTATCAAACTAAGTTATGATCATCTACCATTTCATTTGAAAAAGTGCTTTGCTTTTTGTTCATTGTTTCCAAAAGACTATTTAATTCCTAAAACAACATTGATTCGACTTTGGATTGCACAAGGGTTTGTTCAGTCATCAGATGAAAGTACATGTTTAGAAGATATTGGTGATAAGTACTTCATGGATTTTGTTCATAAATCTTTCTTCCAAAATATCAACGAAGTTTCTTTCATTCGCGACTTCGTGACCTTCCAAATGCATGATATTGTGCATGATCTGGCAAGTTCCATTTCAGAAAATGACTATCTTTTAGTTAATAAAAAGCGAAAGCAGATTGACAAACAAACTCGACATGTCTCTTTTGACTTTGAATTTGATTCTTCCTGGCAAGTTCCAACTTCTCTTCTCAATGCTTACAAATTAAGAACCTTTCTATTACCACAACATTCGGATCCAAGGACTTATTTCTATTTAGGTTCAATAGAATTGTTTGCTTGTAATTCCATCCTGTCAAGTTCTAAACGATTCCGTGTGCTGAATCTTAACCGCATAAATTCAAGGAAGATTCCATCTAGTATTGGAAGGATGAAATACCTAAGGTATCTTAATTTAACTTCTATGCCGCATGGGATAGGAAAGATGACTAATCTTCAAACATTGACACAATTTGTGTTAGATACAACTTCTAAAGATAGTGCTAAAACAAGTGAGCTAGGAGGATTACATAATTTGAGGGGACGACTCATGATAAATGGCTTGGAACGTCTTAGGCATTGTCCAACAGAAGCTAAGCATATGAATTTAATAGGGAAGTCACATCTTGATCGGTTAACTTTGAATTGGAACAAACACACTGTTGGTGATGGCAATGATTTTAAAAGGATGATATAA

Protein sequence

>Msa0682550

MKENVSVISIIGIGGLIKTALAQLVYGDRKVQQHFELKKWVCVSDDFDVKGIASKIIESKTNVEMDKVQLELREKVEGRRYLLVLDDNWNEDRDLWLQLMTLLKGGAKGSKIIITTRSEKVSKASGASSIFNLKGLDEKQSWRLFSQLAFENDKELENEELVPIGKEIVNKCSGVPLAIRSIGSLMYSMPKEDWSTFKIKDLMKIDEQGDEKIFQLIKLSYDHLPFHLKKCFAFCSLFPKDYLIPKTTLIRLWIAQGFVQSSDESTCLEDIGDKYFMDFVHKSFFQNINEVSFIRDFVTFQMHDIVHDLASSISENDYLLVNKKRKQIDKQTRHVSFDFEFDSSWQVPTSLLNAYKLRTFLLPQHSDPRTYFYLGSIELFACNSILSSSKRFRVLNLNRINSRKIPSSIGRMKYLRYLNLTSMPHGIGKMTNLQTLTQFVLDTTSKDSAKTSELGGLHNLRGRLMINGLERLRHCPTEAKHMNLIGKSHLDRLTLNWNKHTVGDGNDFKRMI*