Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435240 | XP_003608623.4 | 95.283 | 318 | 15 | 0 | 1 | 318 | 1 | 318 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435240 | sp|O82162|EYA_ARATH | 59.727 | 293 | 110 | 1 | 24 | 316 | 19 | 303 | 8.78e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435240 | I3S9D7 | 95.283 | 318 | 15 | 0 | 1 | 318 | 1 | 318 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1385770 | Msa1435240 | 0.805131 | 1.548272e-49 | -8.615850e-47 |
| Msa1409240 | Msa1435240 | 0.806229 | 9.104881e-50 | -8.615850e-47 |
| Msa1426890 | Msa1435240 | 0.997026 | 9.467222e-236 | -8.615850e-47 |
| Msa1434140 | Msa1435240 | 0.810015 | 1.422245e-50 | -8.615850e-47 |
| Msa1435240 | Msa1440200 | 0.834511 | 2.873103e-56 | -8.615850e-47 |
| Msa0194950 | Msa1435240 | -0.800552 | 1.365886e-48 | -8.615850e-47 |
| Msa0236960 | Msa1435240 | -0.814500 | 1.493019e-51 | -8.615850e-47 |
| Msa1250510 | Msa1435240 | 0.992888 | 4.458625e-196 | -8.615850e-47 |
| Msa1297510 | Msa1435240 | 0.989360 | 8.674242e-178 | -8.615850e-47 |
| Msa1297570 | Msa1435240 | 0.958264 | 3.619420e-116 | -8.615850e-47 |
| Msa0398670 | Msa1435240 | 0.807452 | 5.020885e-50 | -8.615850e-47 |
| Msa0295710 | Msa1435240 | 0.801006 | 1.103751e-48 | -8.615850e-47 |
| Msa0304960 | Msa1435240 | 0.802602 | 5.191077e-49 | -8.615850e-47 |
| Msa0315440 | Msa1435240 | -0.801735 | 7.825776e-49 | -8.615850e-47 |
| Msa0934850 | Msa1435240 | 0.844600 | 6.836836e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435240 | MtrunA17_Chr4g0054711 | 95.283 | 318 | 15 | 0 | 1 | 318 | 1 | 318 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435240 | AT2G35320.1 | 59.727 | 293 | 110 | 1 | 24 | 316 | 19 | 303 | 8.93e-134 | 382 |
Find 99 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGCTGGATGTTTATATT+TGG | 0.134573 | tig0027682:-23628 | Msa1435240:CDS |
| GTCCTTCCCATCATCATATT+TGG | 0.167846 | tig0027682:+23321 | None:intergenic |
| GAAATAGTGGCCAACTGTTT+TGG | 0.272876 | tig0027682:+18816 | None:intergenic |
| AGTGGAATGGCGGTTGCATC+TGG | 0.283682 | tig0027682:-23698 | Msa1435240:exon |
| GTTATAAGCAAGTTTGCTTT+TGG | 0.309186 | tig0027682:-18287 | Msa1435240:three_prime_UTR |
| GTAAGGAGTTGAGCAGTATA+AGG | 0.313569 | tig0027682:+23591 | None:intergenic |
| CAGGCTGGATGTTTATATTT+GGG | 0.326293 | tig0027682:-23627 | Msa1435240:CDS |
| TCTTCGTCATTGTCATTGTT+TGG | 0.328913 | tig0027682:+18781 | None:intergenic |
| TACTGCTAAATGAACGATAA+AGG | 0.355011 | tig0027682:+18430 | None:intergenic |
| GACTTCAACCAAGATGAATT+AGG | 0.355911 | tig0027682:-23286 | Msa1435240:CDS |
| ATCAGGAGACAATAAAAGTA+TGG | 0.360230 | tig0027682:-19543 | Msa1435240:CDS |
| AAAATGCTTGCTCTTTCATC+TGG | 0.365350 | tig0027682:-19235 | Msa1435240:CDS |
| GCCTGTTTGACGGAGTGTTC+TGG | 0.403472 | tig0027682:-19378 | Msa1435240:CDS |
| TGGCGGTTGCATCTGGGATG+AGG | 0.421814 | tig0027682:-23691 | Msa1435240:CDS |
| GTTAGTTAGTTACCTTGCTT+AGG | 0.429764 | tig0027682:+24237 | None:intergenic |
| TATACACATGGCAACACAAT+TGG | 0.430793 | tig0027682:+18672 | None:intergenic |
| ACAAAAGAAAACTTGCATAT+AGG | 0.431167 | tig0027682:-23243 | Msa1435240:CDS |
| TGCAGAAAGGTGTCGAGCTT+GGG | 0.436778 | tig0027682:-23526 | Msa1435240:CDS |
| GTTAAAATTGACCCGCGACC+AGG | 0.438397 | tig0027682:-18868 | Msa1435240:CDS |
| TTGGACAGAACATCAAGAAA+TGG | 0.442699 | tig0027682:+23340 | None:intergenic |
| ACCAGAACACTCCGTCAAAC+AGG | 0.443403 | tig0027682:+19377 | None:intergenic |
| TATATATATGAACCTTATCT+TGG | 0.449587 | tig0027682:-18474 | Msa1435240:three_prime_UTR |
| TCATTTCAGTGTATAGCTCC+TGG | 0.451230 | tig0027682:-19017 | Msa1435240:intron |
| TTCAGCACGGGCCTGTTTGA+CGG | 0.451891 | tig0027682:-19388 | Msa1435240:intron |
| CTGATGAATATACCGACAAA+TGG | 0.459678 | tig0027682:-19501 | Msa1435240:CDS |
| GCCACAACTTAGATGTTAAC+GGG | 0.461271 | tig0027682:-18628 | Msa1435240:three_prime_UTR |
| AACAGACAGGATCACGGAAA+AGG | 0.467858 | tig0027682:+18733 | None:intergenic |
| TGCCACAACTTAGATGTTAA+CGG | 0.467936 | tig0027682:-18629 | Msa1435240:three_prime_UTR |
| TCAATGTTTCCGATGGATCA+AGG | 0.468622 | tig0027682:-18980 | Msa1435240:CDS |
| ATCACACAAAAGCGAACGTT+GGG | 0.471747 | tig0027682:+18943 | None:intergenic |
| GTGCAGAAAGGTGTCGAGCT+TGG | 0.477963 | tig0027682:-23527 | Msa1435240:CDS |
| TAAGGAGTTGAGCAGTATAA+GGG | 0.478805 | tig0027682:+23592 | None:intergenic |
| GATATACCACAGAGAAATAG+TGG | 0.480780 | tig0027682:+18803 | None:intergenic |
| ACCTGATGAAAGCCATTTGT+CGG | 0.482110 | tig0027682:+19489 | None:intergenic |
| AGTGTATAGCTCCTGGGAAG+TGG | 0.483068 | tig0027682:-19010 | Msa1435240:CDS |
| GCAGGGCACAGCTAGGTTAG+TGG | 0.485399 | tig0027682:-23716 | Msa1435240:intron |
| ACCGACAAATGGCTTTCATC+AGG | 0.486588 | tig0027682:-19490 | Msa1435240:intron |
| GTGGAGGGCCTAATTCATCT+TGG | 0.487188 | tig0027682:+23278 | None:intergenic |
| AGTTAGTTACCTTGCTTAGG+TGG | 0.492131 | tig0027682:+24240 | None:intergenic |
| AGCTTAATAACACATGGAAA+TGG | 0.499983 | tig0027682:-19210 | Msa1435240:intron |
| CCAAATATAAACATCCAGCC+TGG | 0.501450 | tig0027682:+23628 | None:intergenic |
| ACAGACAGGATCACGGAAAA+GGG | 0.508964 | tig0027682:+18734 | None:intergenic |
| GGCGGTTGCATCTGGGATGA+GGG | 0.510055 | tig0027682:-23690 | Msa1435240:CDS |
| TTTATCGTTCATTTAGCAGT+AGG | 0.512601 | tig0027682:-18428 | Msa1435240:intron |
| GTGTATAGCTCCTGGGAAGT+GGG | 0.525965 | tig0027682:-19009 | Msa1435240:CDS |
| TGTTGGCATCATCATGTGGA+GGG | 0.526573 | tig0027682:+23263 | None:intergenic |
| GGAAAATTCAATGTTTCCGA+TGG | 0.526933 | tig0027682:-18987 | Msa1435240:CDS |
| GTTCTGTCCAAATATGATGA+TGG | 0.527183 | tig0027682:-23328 | Msa1435240:CDS |
| CGCGACCAGGAAAATCTCAT+AGG | 0.528352 | tig0027682:-18855 | Msa1435240:CDS |
| TTGTGTGATTGGAGATGGAT+GGG | 0.529397 | tig0027682:-18929 | Msa1435240:CDS |
| GGATGAGGGCGGATGAAACA+CGG | 0.531138 | tig0027682:-23676 | Msa1435240:CDS |
| GGTTGAAGTCATAATCAGAT+AGG | 0.531324 | tig0027682:+23299 | None:intergenic |
| CCTGGGATGGATGTTGTCAC+TGG | 0.532753 | tig0027682:+23646 | None:intergenic |
| GGAAAATCTCATAGGTTCCC+TGG | 0.533790 | tig0027682:-18847 | Msa1435240:CDS |
| TTGTTGGCATCATCATGTGG+AGG | 0.540277 | tig0027682:+23262 | None:intergenic |
| AAGCTGCAGAAATCATGAAA+TGG | 0.540685 | tig0027682:-18897 | Msa1435240:CDS |
| GTGGAATGGCGGTTGCATCT+GGG | 0.541648 | tig0027682:-23697 | Msa1435240:exon |
| TGAAACGCTCCTTGATCCAT+CGG | 0.542051 | tig0027682:+18971 | None:intergenic |
| AGTTGAGTCTGTGCTTGTGT+TGG | 0.545298 | tig0027682:+19320 | None:intergenic |
| GTGTCGAGCTTGGGAAGACG+TGG | 0.551286 | tig0027682:-23517 | Msa1435240:CDS |
| TTTCAGACCGTTGAAAGCCT+CGG | 0.551738 | tig0027682:+23553 | None:intergenic |
| CATTTCAGTGTATAGCTCCT+GGG | 0.553970 | tig0027682:-19016 | Msa1435240:intron |
| TGACAACATCCATCCCAGGC+TGG | 0.557450 | tig0027682:-23642 | Msa1435240:CDS |
| CTGGACAGCTTAATAACACA+TGG | 0.559956 | tig0027682:-19216 | Msa1435240:CDS |
| GGATGTTTATATTTGGGACA+TGG | 0.560493 | tig0027682:-23621 | Msa1435240:CDS |
| ATTTAGAAGTAGATGTGGAC+GGG | 0.563466 | tig0027682:-18551 | Msa1435240:three_prime_UTR |
| TATAAACATCCAGCCTGGGA+TGG | 0.563931 | tig0027682:+23633 | None:intergenic |
| GGCATATGATGATTTCAGTA+AGG | 0.564789 | tig0027682:+23574 | None:intergenic |
| TTTGTGTGATTGGAGATGGA+TGG | 0.565338 | tig0027682:-18930 | Msa1435240:CDS |
| ATGAGCTGGTGACCAAGATA+AGG | 0.570199 | tig0027682:+18462 | None:intergenic |
| CACAAATTTAGAAGTAGATG+TGG | 0.570200 | tig0027682:-18556 | Msa1435240:three_prime_UTR |
| GGCCTCACATCCAAAACAGT+TGG | 0.572986 | tig0027682:-18826 | Msa1435240:CDS |
| TTCTGTCCAAATATGATGAT+GGG | 0.586519 | tig0027682:-23327 | Msa1435240:CDS |
| CAAATATAAACATCCAGCCT+GGG | 0.588832 | tig0027682:+23629 | None:intergenic |
| ACCCGTTAACATCTAAGTTG+TGG | 0.593787 | tig0027682:+18627 | None:intergenic |
| CACAAAAGCGAACGTTGGGA+TGG | 0.594094 | tig0027682:+18947 | None:intergenic |
| GGTTGCATCTGGGATGAGGG+CGG | 0.595621 | tig0027682:-23687 | Msa1435240:CDS |
| GATGAGGGCGGATGAAACAC+GGG | 0.597702 | tig0027682:-23675 | Msa1435240:CDS |
| GTCCAAATATGATGATGGGA+AGG | 0.598075 | tig0027682:-23323 | Msa1435240:CDS |
| CCAGTGACAACATCCATCCC+AGG | 0.601396 | tig0027682:-23646 | Msa1435240:CDS |
| TGTATAGCTCCTGGGAAGTG+GGG | 0.615041 | tig0027682:-19008 | Msa1435240:CDS |
| AAAGGTGAGATATGATGAGC+TGG | 0.618326 | tig0027682:+18448 | None:intergenic |
| TATATATTGATGCCATGTGA+TGG | 0.618870 | tig0027682:-18653 | Msa1435240:three_prime_UTR |
| GCACAGCTAGGTTAGTGGAA+TGG | 0.619207 | tig0027682:-23711 | Msa1435240:exon |
| AATCACACAAAAGCGAACGT+TGG | 0.620019 | tig0027682:+18942 | None:intergenic |
| TTGGGCAACAGACAGGATCA+CGG | 0.620213 | tig0027682:+18727 | None:intergenic |
| AATTTAGAAGTAGATGTGGA+CGG | 0.624181 | tig0027682:-18552 | Msa1435240:three_prime_UTR |
| AAGTTGTGGCAGCCATCACA+TGG | 0.624650 | tig0027682:+18641 | None:intergenic |
| GGTCTGAAAGATGTGCAGAA+AGG | 0.625906 | tig0027682:-23539 | Msa1435240:CDS |
| TCATATGCCGAGGCTTTCAA+CGG | 0.629640 | tig0027682:-23560 | Msa1435240:CDS |
| TTCTGGTGAAAATAAAGACG+TGG | 0.641960 | tig0027682:-19361 | Msa1435240:CDS |
| CAGCTAGGTTAGTGGAATGG+CGG | 0.653323 | tig0027682:-23708 | Msa1435240:exon |
| TCTCTGCAACCACCTAAGCA+AGG | 0.661296 | tig0027682:-24249 | Msa1435240:intron |
| ACTGAAATCATCATATGCCG+AGG | 0.664008 | tig0027682:-23570 | Msa1435240:CDS |
| CATCTTATATACATGAGCAG+AGG | 0.677676 | tig0027682:+18508 | None:intergenic |
| AGTTGGCCACTATTTCTCTG+TGG | 0.681956 | tig0027682:-18809 | Msa1435240:CDS |
| CTTGTGATAATAACTGTACG+AGG | 0.682279 | tig0027682:+18331 | None:intergenic |
| TGTCGAGCTTGGGAAGACGT+GGG | 0.694651 | tig0027682:-23516 | Msa1435240:CDS |
| ATGGCATCAATATATACACA+TGG | 0.727755 | tig0027682:+18660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAATAAAAAATT+GGG | + | tig0027682:21700-21719 | None:intergenic | 0.0% |
| !! | TTAAAAAAAAAATAAAAAAT+TGG | + | tig0027682:21701-21720 | None:intergenic | 0.0% |
| !!! | AAACTTATATTTTTAAACAA+GGG | + | tig0027682:19816-19835 | None:intergenic | 10.0% |
| !!! | AAATTTTGTATTTATTTCTA+TGG | - | tig0027682:20259-20278 | Msa1435240:intron | 10.0% |
| !!! | TCTTTATTTTCTAATATAAT+TGG | + | tig0027682:21796-21815 | None:intergenic | 10.0% |
| !! | ATTATATTAGAAAATAAAGA+AGG | - | tig0027682:21796-21815 | Msa1435240:intron | 10.0% |
| !!! | ATTATGATTATTGATTCAAA+TGG | + | tig0027682:19709-19728 | None:intergenic | 15.0% |
| !!! | GAAACTTATATTTTTAAACA+AGG | + | tig0027682:19817-19836 | None:intergenic | 15.0% |
| !!! | TTTCTAAAACATGATATTTT+TGG | - | tig0027682:19833-19852 | Msa1435240:intron | 15.0% |
| !!! | TTTTTACTTATCTATTATAC+TGG | - | tig0027682:19894-19913 | Msa1435240:intron | 15.0% |
| !!! | TATTTTCTAATATAATTGGA+AGG | + | tig0027682:21792-21811 | None:intergenic | 15.0% |
| !!! | ATTTGAAACAATTATGATAT+TGG | - | tig0027682:22550-22569 | Msa1435240:intron | 15.0% |
| !!! | TTTACATAATATTTTAGATC+AGG | - | tig0027682:23024-23043 | Msa1435240:intron | 15.0% |
| !! | TAAATATAACTAATACATAC+AGG | + | tig0027682:23161-23180 | None:intergenic | 15.0% |
| !! | AACTAGTAATCATATTATAT+TGG | - | tig0027682:23482-23501 | Msa1435240:CDS | 15.0% |
| !! | ACTAGTAATCATATTATATT+GGG | - | tig0027682:23483-23502 | Msa1435240:CDS | 15.0% |
| !! | ATAATGATGTCAATATTGAA+TGG | - | tig0027682:18795-18814 | Msa1435240:CDS | 20.0% |
| !! | CATAAAAGGAAACAATTATA+TGG | + | tig0027682:19792-19811 | None:intergenic | 20.0% |
| !!! | ATGATATTTTTGGTTTTACA+AGG | - | tig0027682:19843-19862 | Msa1435240:intron | 20.0% |
| !! | ACCATAATGTAATGTATATA+TGG | - | tig0027682:19933-19952 | Msa1435240:intron | 20.0% |
| !! | AATATACTAAGACAACATAT+AGG | + | tig0027682:20299-20318 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAACAGGATTCTA+TGG | + | tig0027682:20803-20822 | None:intergenic | 20.0% |
| !! | GAATCCTGTTAAAAAAATAA+CGG | - | tig0027682:20805-20824 | Msa1435240:intron | 20.0% |
| !! | AACATTACCTTAAAAAGTAA+AGG | - | tig0027682:21368-21387 | Msa1435240:intron | 20.0% |
| !! | ACATTACCTTAAAAAGTAAA+GGG | - | tig0027682:21369-21388 | Msa1435240:intron | 20.0% |
| !!! | AAAAGATTTTTTTTAACCTC+CGG | + | tig0027682:21654-21673 | None:intergenic | 20.0% |
| !!! | ATGATTATTGACTTCATAAA+AGG | + | tig0027682:21737-21756 | None:intergenic | 20.0% |
| !! | TAATGAAGATAAACAGATAT+TGG | + | tig0027682:21842-21861 | None:intergenic | 20.0% |
| !! | GTATCAGTATGAATAAAAAA+AGG | - | tig0027682:21891-21910 | Msa1435240:intron | 20.0% |
| !! | GGAATAATTATTGTTCAAAT+TGG | - | tig0027682:21912-21931 | Msa1435240:intron | 20.0% |
| !!! | AAGCACACTTTTTATTTTAA+GGG | + | tig0027682:22324-22343 | None:intergenic | 20.0% |
| !!! | TAAGCACACTTTTTATTTTA+AGG | + | tig0027682:22325-22344 | None:intergenic | 20.0% |
| !!! | GAATAAAAAGCACTAATTAA+TGG | - | tig0027682:22525-22544 | Msa1435240:intron | 20.0% |
| !! | ACTTACTATAAAAGCTTATT+AGG | + | tig0027682:22821-22840 | None:intergenic | 20.0% |
| !! | TTAAATGAAGTAAACTTGTA+TGG | + | tig0027682:22969-22988 | None:intergenic | 20.0% |
| !! | ATACAAGTTTACTTCATTTA+AGG | - | tig0027682:22968-22987 | Msa1435240:intron | 20.0% |
| !!! | TTGTTTTATATATTTCAGCA+CGG | - | tig0027682:23183-23202 | Msa1435240:intron | 20.0% |
| !!! | ATATGATTACTAGTTTTGAA+TGG | + | tig0027682:23477-23496 | None:intergenic | 20.0% |
| !! | CTAGTAATCATATTATATTG+GGG | - | tig0027682:23484-23503 | Msa1435240:CDS | 20.0% |
| !!! | TGAACTATTTTTATATGACA+TGG | - | tig0027682:23996-24015 | Msa1435240:intron | 20.0% |
| !! | TATATATATGAACCTTATCT+TGG | - | tig0027682:24110-24129 | Msa1435240:intron | 20.0% |
| ! | AAAAGTTGAAAATCACGATA+TGG | + | tig0027682:18410-18429 | None:intergenic | 25.0% |
| ! | CAGTTGAAAGAATAATTCAA+CGG | + | tig0027682:18547-18566 | None:intergenic | 25.0% |
| ! | TTGAATTATTCTTTCAACTG+AGG | - | tig0027682:18547-18566 | Msa1435240:three_prime_UTR | 25.0% |
| !!! | ATTATAGTTTTTTAGCTCAG+CGG | - | tig0027682:18726-18745 | Msa1435240:three_prime_UTR | 25.0% |
| ! | TCAATATTGACATCATTATC+CGG | + | tig0027682:18794-18813 | None:intergenic | 25.0% |
| !! | TCTTGTTCAAATATTTTCCA+TGG | - | tig0027682:19152-19171 | Msa1435240:intron | 25.0% |
| !! | ATATGCAAGTTTTCTTTTGT+TGG | + | tig0027682:19341-19360 | None:intergenic | 25.0% |
| ! | ACAAAAGAAAACTTGCATAT+AGG | - | tig0027682:19341-19360 | Msa1435240:CDS | 25.0% |
| ! | ATAAATGAATCAATTTCAGG+AGG | + | tig0027682:19505-19524 | None:intergenic | 25.0% |
| ! | CAGATAAATGAATCAATTTC+AGG | + | tig0027682:19508-19527 | None:intergenic | 25.0% |
| ! | AATGAACGAAATGTATAAAG+GGG | + | tig0027682:19686-19705 | None:intergenic | 25.0% |
| ! | GAATGAACGAAATGTATAAA+GGG | + | tig0027682:19687-19706 | None:intergenic | 25.0% |
| !! | TTTTAAACAAGGGTCATAAA+AGG | + | tig0027682:19806-19825 | None:intergenic | 25.0% |
| !! | ATTATGGTTTTCTAGATAGT+AGG | + | tig0027682:19921-19940 | None:intergenic | 25.0% |
| ! | GCCATATATACATTACATTA+TGG | + | tig0027682:19937-19956 | None:intergenic | 25.0% |
| ! | TAATGTATATATGGCTGAAA+TGG | - | tig0027682:19942-19961 | Msa1435240:intron | 25.0% |
| ! | CAGCTATCTAAATTAAGATT+AGG | + | tig0027682:20076-20095 | None:intergenic | 25.0% |
| ! | AGAAATAAACAAGTTATGAC+AGG | + | tig0027682:20177-20196 | None:intergenic | 25.0% |
| !!! | TATTTCTAGTATGTGATGAA+TGG | - | tig0027682:20190-20209 | Msa1435240:intron | 25.0% |
| !!! | CATGTTTTAGGTAAAATGAA+GGG | + | tig0027682:20381-20400 | None:intergenic | 25.0% |
| !!! | TCATGTTTTAGGTAAAATGA+AGG | + | tig0027682:20382-20401 | None:intergenic | 25.0% |
| !! | TGTCAACATTTTCATGTTTT+AGG | + | tig0027682:20393-20412 | None:intergenic | 25.0% |
| ! | CCTTTACTATATCTTCAATA+TGG | + | tig0027682:20496-20515 | None:intergenic | 25.0% |
| ! | CCATATTGAAGATATAGTAA+AGG | - | tig0027682:20493-20512 | Msa1435240:intron | 25.0% |
| !!! | TGTTCCGTTATTTTTTTAAC+AGG | + | tig0027682:20812-20831 | None:intergenic | 25.0% |
| ! | ACTCTTCTCAAAATATCAAA+AGG | + | tig0027682:21033-21052 | None:intergenic | 25.0% |
| !!! | TATGTACCCTTTACTTTTTA+AGG | + | tig0027682:21378-21397 | None:intergenic | 25.0% |
| !!! | CTATTTTTCTTACGTGATTT+AGG | + | tig0027682:21571-21590 | None:intergenic | 25.0% |
| !! | TCTTCGTTTTGTATAAATAC+CGG | - | tig0027682:21632-21651 | Msa1435240:intron | 25.0% |
| ! | TGCTTATTATGGAAATATGT+AGG | + | tig0027682:21942-21961 | None:intergenic | 25.0% |
| ! | ATATTTCCATAATAAGCATC+AGG | - | tig0027682:21944-21963 | Msa1435240:intron | 25.0% |
| ! | TCTTAAAAACGTTAGTTGTT+GGG | + | tig0027682:22059-22078 | None:intergenic | 25.0% |
| ! | ATCTTAAAAACGTTAGTTGT+TGG | + | tig0027682:22060-22079 | None:intergenic | 25.0% |
| ! | ACCCAACAACTATAAAAATA+GGG | - | tig0027682:22088-22107 | Msa1435240:intron | 25.0% |
| ! | ACATAGGGCTATTAAAATAA+AGG | - | tig0027682:22244-22263 | Msa1435240:intron | 25.0% |
| ! | TATGAAAGGACATTTACATT+TGG | - | tig0027682:22680-22699 | Msa1435240:intron | 25.0% |
| ! | ATGAAAGGACATTTACATTT+GGG | - | tig0027682:22681-22700 | Msa1435240:intron | 25.0% |
| ! | TATTGAGACTTAAAGAGTTA+TGG | - | tig0027682:22938-22957 | Msa1435240:intron | 25.0% |
| !! | TGTTTTATATATTTCAGCAC+GGG | - | tig0027682:23184-23203 | Msa1435240:intron | 25.0% |
| !!! | TATTTTTATATGACATGGCT+GGG | - | tig0027682:24001-24020 | Msa1435240:intron | 25.0% |
| TATAGTTACAGTTGAAGAGA+TGG | + | tig0027682:18384-18403 | None:intergenic | 30.0% | |
| GTAACTATCAACAATACACA+AGG | + | tig0027682:18678-18697 | None:intergenic | 30.0% | |
| !! | TGTATTGTTGATAGTTACAG+TGG | - | tig0027682:18680-18699 | Msa1435240:three_prime_UTR | 30.0% |
| TCAATCTGCAAAACAAAAAC+CGG | + | tig0027682:19211-19230 | None:intergenic | 30.0% | |
| TTCTGTCCAAATATGATGAT+GGG | - | tig0027682:19257-19276 | Msa1435240:CDS | 30.0% | |
| ! | TGTTACCTGCAAGTATTTTT+GGG | + | tig0027682:19380-19399 | None:intergenic | 30.0% |
| ATTGCTAAAGTCCATAACAT+GGG | - | tig0027682:19445-19464 | Msa1435240:intron | 30.0% | |
| AACAAGAATATCCCATGTTA+TGG | + | tig0027682:19459-19478 | None:intergenic | 30.0% | |
| TAGTCAGTTAGTCAAATAGT+TGG | - | tig0027682:19590-19609 | Msa1435240:intron | 30.0% | |
| GGAATGAACGAAATGTATAA+AGG | + | tig0027682:19688-19707 | None:intergenic | 30.0% | |
| AACTTCCAAAACATAGTGTT+TGG | - | tig0027682:20035-20054 | Msa1435240:intron | 30.0% | |
| AGTTATGACAGGAAAATGAA+TGG | + | tig0027682:20166-20185 | None:intergenic | 30.0% | |
| ! | TCTTAGTATATTTGCTGAGT+TGG | - | tig0027682:20307-20326 | Msa1435240:intron | 30.0% |
| AAGTAAAAGTTGACAGAAGA+AGG | - | tig0027682:20564-20583 | Msa1435240:intron | 30.0% | |
| GGAATAATCTAATCTTCGTA+TGG | + | tig0027682:20719-20738 | None:intergenic | 30.0% | |
| ATTCAAACTTAGGATTCTAG+TGG | + | tig0027682:20993-21012 | None:intergenic | 30.0% | |
| ACTAGAATCCTAAGTTTGAA+TGG | - | tig0027682:20992-21011 | Msa1435240:intron | 30.0% | |
| CTAGAATCCTAAGTTTGAAT+GGG | - | tig0027682:20993-21012 | Msa1435240:intron | 30.0% | |
| !! | GTTTGTTGCTCAAATTTTCA+GGG | + | tig0027682:21435-21454 | None:intergenic | 30.0% |
| !!! | AGTTTGTTGCTCAAATTTTC+AGG | + | tig0027682:21436-21455 | None:intergenic | 30.0% |
| GCAAAACAGATCATCAAAAT+TGG | - | tig0027682:21594-21613 | Msa1435240:intron | 30.0% | |
| ATAAACAGATATTGGTGCAA+TGG | + | tig0027682:21834-21853 | None:intergenic | 30.0% | |
| TTCATACCTGATGCTTATTA+TGG | + | tig0027682:21953-21972 | None:intergenic | 30.0% | |
| TGTGTCATATTGACAATCAT+TGG | + | tig0027682:21991-22010 | None:intergenic | 30.0% | |
| CACCCAACAACTATAAAAAT+AGG | - | tig0027682:22087-22106 | Msa1435240:intron | 30.0% | |
| !!! | CCCCTATTTTTATAGTTGTT+GGG | + | tig0027682:22092-22111 | None:intergenic | 30.0% |
| CCCAACAACTATAAAAATAG+GGG | - | tig0027682:22089-22108 | Msa1435240:intron | 30.0% | |
| CCAACAACTATAAAAATAGG+GGG | - | tig0027682:22090-22109 | Msa1435240:intron | 30.0% | |
| ATAAAAATAGGGGGAATACT+TGG | - | tig0027682:22099-22118 | Msa1435240:intron | 30.0% | |
| TAAAAATAGGGGGAATACTT+GGG | - | tig0027682:22100-22119 | Msa1435240:intron | 30.0% | |
| !! | TTCCCAATTACTTTTCACAT+AGG | - | tig0027682:22228-22247 | Msa1435240:intron | 30.0% |
| !! | TCCCAATTACTTTTCACATA+GGG | - | tig0027682:22229-22248 | Msa1435240:intron | 30.0% |
| AAAATAAAGGTCATGCTAAC+CGG | - | tig0027682:22257-22276 | Msa1435240:intron | 30.0% | |
| TATATTGCATGAAGAAAGTG+TGG | - | tig0027682:22402-22421 | Msa1435240:intron | 30.0% | |
| AAACAAAAGATTAACAGTGG+CGG | + | tig0027682:22439-22458 | None:intergenic | 30.0% | |
| AAGGATTGCTTAAGACATTA+AGG | - | tig0027682:22630-22649 | Msa1435240:intron | 30.0% | |
| AGGATTGCTTAAGACATTAA+GGG | - | tig0027682:22631-22650 | Msa1435240:intron | 30.0% | |
| ACTCAATTAAGGCTTATGAA+AGG | - | tig0027682:22666-22685 | Msa1435240:intron | 30.0% | |
| GGAAAAACCAAAAGCTATTA+GGG | - | tig0027682:22779-22798 | Msa1435240:intron | 30.0% | |
| !!! | GGTAATTTGTTTTCTAACGA+TGG | - | tig0027682:22880-22899 | Msa1435240:intron | 30.0% |
| ATTATGTAAACCCTGAAACA+AGG | + | tig0027682:23014-23033 | None:intergenic | 30.0% | |
| ATCAGGAGACAATAAAAGTA+TGG | - | tig0027682:23041-23060 | Msa1435240:intron | 30.0% | |
| AGCTTAATAACACATGGAAA+TGG | - | tig0027682:23374-23393 | Msa1435240:intron | 30.0% | |
| TGAATGGTTTGAAAGATGTT+TGG | + | tig0027682:23461-23480 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCCTTCCCTTTTTT+GGG | + | tig0027682:23878-23897 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCCTTCCCTTTTT+TGG | + | tig0027682:23879-23898 | None:intergenic | 30.0% |
| ATGGCATCAATATATACACA+TGG | + | tig0027682:23927-23946 | None:intergenic | 30.0% | |
| TATATATTGATGCCATGTGA+TGG | - | tig0027682:23931-23950 | Msa1435240:intron | 30.0% | |
| !!! | CTATTTTTATATGACATGGC+TGG | - | tig0027682:24000-24019 | Msa1435240:intron | 30.0% |
| CACAAATTTAGAAGTAGATG+TGG | - | tig0027682:24028-24047 | Msa1435240:intron | 30.0% | |
| AATTTAGAAGTAGATGTGGA+CGG | - | tig0027682:24032-24051 | Msa1435240:intron | 30.0% | |
| TACTGCTAAATGAACGATAA+AGG | + | tig0027682:24157-24176 | None:intergenic | 30.0% | |
| TTTATCGTTCATTTAGCAGT+AGG | - | tig0027682:24156-24175 | Msa1435240:intron | 30.0% | |
| ! | TACTATTAGCCTAAACCAAA+TGG | - | tig0027682:24193-24212 | Msa1435240:intron | 30.0% |
| ! | AACGAATTTCCATTTGGTTT+AGG | + | tig0027682:24205-24224 | None:intergenic | 30.0% |
| !! | GTTATAAGCAAGTTTGCTTT+TGG | - | tig0027682:24297-24316 | Msa1435240:five_prime_UTR | 30.0% |
| GTTAGTTAGTTACCTTGCTT+AGG | + | tig0027682:18350-18369 | None:intergenic | 35.0% | |
| CTATAATGACTATAGAGCTG+CGG | + | tig0027682:18713-18732 | None:intergenic | 35.0% | |
| CAAATATAAACATCCAGCCT+GGG | + | tig0027682:18958-18977 | None:intergenic | 35.0% | |
| CAGGCTGGATGTTTATATTT+GGG | - | tig0027682:18957-18976 | Msa1435240:CDS | 35.0% | |
| ! | GGATGTTTATATTTGGGACA+TGG | - | tig0027682:18963-18982 | Msa1435240:CDS | 35.0% |
| TAAGGAGTTGAGCAGTATAA+GGG | + | tig0027682:18995-19014 | None:intergenic | 35.0% | |
| GGCATATGATGATTTCAGTA+AGG | + | tig0027682:19013-19032 | None:intergenic | 35.0% | |
| CCACAACTAAAAACAATCCA+TGG | + | tig0027682:19172-19191 | None:intergenic | 35.0% | |
| !!! | CCATGGATTGTTTTTAGTTG+TGG | - | tig0027682:19169-19188 | Msa1435240:intron | 35.0% |
| TTAGTTGTGGAGAGTTAGTT+TGG | - | tig0027682:19182-19201 | Msa1435240:intron | 35.0% | |
| TTGGACAGAACATCAAGAAA+TGG | + | tig0027682:19247-19266 | None:intergenic | 35.0% | |
| GTTCTGTCCAAATATGATGA+TGG | - | tig0027682:19256-19275 | Msa1435240:CDS | 35.0% | |
| GGTTGAAGTCATAATCAGAT+AGG | + | tig0027682:19288-19307 | None:intergenic | 35.0% | |
| GACTTCAACCAAGATGAATT+AGG | - | tig0027682:19298-19317 | Msa1435240:CDS | 35.0% | |
| TATAGCCCAAAAATACTTGC+AGG | - | tig0027682:19372-19391 | Msa1435240:CDS | 35.0% | |
| ! | GTGTTACCTGCAAGTATTTT+TGG | + | tig0027682:19381-19400 | None:intergenic | 35.0% |
| !! | TAACACTTCTGGAGCATTAT+CGG | - | tig0027682:19395-19414 | Msa1435240:intron | 35.0% |
| CATTGCTAAAGTCCATAACA+TGG | - | tig0027682:19444-19463 | Msa1435240:intron | 35.0% | |
| ! | TACGCTTCATGTTTTCTTGA+TGG | - | tig0027682:19534-19553 | Msa1435240:CDS | 35.0% |
| !! | TTCATGTTTTCTTGATGGAC+TGG | - | tig0027682:19539-19558 | Msa1435240:CDS | 35.0% |
| !! | CTGGTTTGGTATATACTACA+TGG | - | tig0027682:19558-19577 | Msa1435240:CDS | 35.0% |
| ! | ACACTCCAAACACTATGTTT+TGG | + | tig0027682:20043-20062 | None:intergenic | 35.0% |
| !! | GTGTTTGGAGTGTTATTTGT+AGG | - | tig0027682:20050-20069 | Msa1435240:intron | 35.0% |
| !! | GTTTTAGGTAAAATGAAGGG+AGG | + | tig0027682:20378-20397 | None:intergenic | 35.0% |
| GTTGACAATTCATCAAGACA+TGG | - | tig0027682:20422-20441 | Msa1435240:intron | 35.0% | |
| ! | AGCTTAGGAAATTTGGTGAT+TGG | - | tig0027682:20447-20466 | Msa1435240:intron | 35.0% |
| ACAGAAGAAGGTAAGATGAA+GGG | - | tig0027682:20576-20595 | Msa1435240:intron | 35.0% | |
| ATACACTATGAGCACTTGTA+TGG | + | tig0027682:20681-20700 | None:intergenic | 35.0% | |
| ! | GAAGCACTTGTAATACACTA+TGG | + | tig0027682:20753-20772 | None:intergenic | 35.0% |
| CAAAGTTTCAAACAAGTGCT+CGG | - | tig0027682:20607-20626 | Msa1435240:intron | 35.0% | |
| CTCTTTGCTCTTAAGAATGT+GGG | + | tig0027682:20906-20925 | None:intergenic | 35.0% | |
| ACTCTTTGCTCTTAAGAATG+TGG | + | tig0027682:20907-20926 | None:intergenic | 35.0% | |
| CATTCTTAAGAGCAAAGAGT+CGG | - | tig0027682:20907-20926 | Msa1435240:intron | 35.0% | |
| ATTCTTAAGAGCAAAGAGTC+GGG | - | tig0027682:20908-20927 | Msa1435240:intron | 35.0% | |
| TTGGAATCCCATTCAAACTT+AGG | + | tig0027682:21003-21022 | None:intergenic | 35.0% | |
| !! | AATATCAAAAGGCTCTGAGT+TGG | + | tig0027682:21022-21041 | None:intergenic | 35.0% |
| !! | TTTTGAGAAGAGTTGCTCTT+TGG | - | tig0027682:21040-21059 | Msa1435240:intron | 35.0% |
| TTGTTGCACTGAAGTATGAA+CGG | + | tig0027682:21282-21301 | None:intergenic | 35.0% | |
| CATACTTCAGTGCAACAATT+CGG | - | tig0027682:21284-21303 | Msa1435240:intron | 35.0% | |
| ! | CTCTACCCAAACTTTTCATT+AGG | - | tig0027682:21406-21425 | Msa1435240:intron | 35.0% |
| GGAAGCCTAATGAAAAGTTT+GGG | + | tig0027682:21414-21433 | None:intergenic | 35.0% | |
| ! | TCGTTTTGTATAAATACCGG+AGG | - | tig0027682:21635-21654 | Msa1435240:intron | 35.0% |
| AAACGTTAGTTGTTGGGTAA+TGG | + | tig0027682:22053-22072 | None:intergenic | 35.0% | |
| !!! | CCCCCTATTTTTATAGTTGT+TGG | + | tig0027682:22093-22112 | None:intergenic | 35.0% |
| CAAAACGTGATGAAATTGCT+TGG | + | tig0027682:22207-22226 | None:intergenic | 35.0% | |
| GCCCTATGTGAAAAGTAATT+GGG | + | tig0027682:22233-22252 | None:intergenic | 35.0% | |
| AGCCCTATGTGAAAAGTAAT+TGG | + | tig0027682:22234-22253 | None:intergenic | 35.0% | |
| AAAGATGTGAGCAAAGGTTA+AGG | + | tig0027682:22376-22395 | None:intergenic | 35.0% | |
| AACAAAAGATTAACAGTGGC+GGG | + | tig0027682:22438-22457 | None:intergenic | 35.0% | |
| GGCAAACAAAAGATTAACAG+TGG | + | tig0027682:22442-22461 | None:intergenic | 35.0% | |
| AAAGTGTGTTATGCAAGCTA+AGG | + | tig0027682:22609-22628 | None:intergenic | 35.0% | |
| ! | GCTTGCATAACACACTTTTA+AGG | - | tig0027682:22611-22630 | Msa1435240:intron | 35.0% |
| ATTGCTTAAGACATTAAGGG+AGG | - | tig0027682:22634-22653 | Msa1435240:intron | 35.0% | |
| ! | GCTTGCATAACACACTTTTA+AGG | - | tig0027682:22611-22630 | Msa1435240:intron | 35.0% |
| !! | CACACTTTTAAGGATTGCTT+AGG | - | tig0027682:22621-22640 | Msa1435240:intron | 35.0% |
| !! | ACTTTTAAGGATTGCTTAGG+AGG | - | tig0027682:22757-22776 | Msa1435240:intron | 35.0% |
| !! | CTTTTAAGGATTGCTTAGGA+GGG | - | tig0027682:22758-22777 | Msa1435240:intron | 35.0% |
| GGGAAAAACCAAAAGCTATT+AGG | - | tig0027682:22778-22797 | Msa1435240:intron | 35.0% | |
| ! | TGCTAAACCCTAATAGCTTT+TGG | + | tig0027682:22789-22808 | None:intergenic | 35.0% |
| CATCTCCTATCTATAAGCAA+TGG | + | tig0027682:22861-22880 | None:intergenic | 35.0% | |
| CATTGCTTATAGATAGGAGA+TGG | - | tig0027682:22859-22878 | Msa1435240:intron | 35.0% | |
| ! | ATATTCTCTCTCCTTGTTTC+AGG | - | tig0027682:23000-23019 | Msa1435240:intron | 35.0% |
| ! | TATTCTCTCTCCTTGTTTCA+GGG | - | tig0027682:23001-23020 | Msa1435240:intron | 35.0% |
| CTGATGAATATACCGACAAA+TGG | - | tig0027682:23083-23102 | Msa1435240:intron | 35.0% | |
| TTCTGGTGAAAATAAAGACG+TGG | - | tig0027682:23223-23242 | Msa1435240:CDS | 35.0% | |
| !!! | GTGAATGTTTTAGTTACAGC+TGG | - | tig0027682:23305-23324 | Msa1435240:CDS | 35.0% |
| ! | AGCAAGCATTTTACAAGAGA+TGG | + | tig0027682:23341-23360 | None:intergenic | 35.0% |
| AAAATGCTTGCTCTTTCATC+TGG | - | tig0027682:23349-23368 | Msa1435240:CDS | 35.0% | |
| GGAAAATTCAATGTTTCCGA+TGG | - | tig0027682:23597-23616 | Msa1435240:CDS | 35.0% | |
| AAGCTGCAGAAATCATGAAA+TGG | - | tig0027682:23687-23706 | Msa1435240:CDS | 35.0% | |
| GATATACCACAGAGAAATAG+TGG | + | tig0027682:23784-23803 | None:intergenic | 35.0% | |
| TCTTCGTCATTGTCATTGTT+TGG | + | tig0027682:23806-23825 | None:intergenic | 35.0% | |
| TATACACATGGCAACACAAT+TGG | + | tig0027682:23915-23934 | None:intergenic | 35.0% | |
| TGCCACAACTTAGATGTTAA+CGG | - | tig0027682:23955-23974 | Msa1435240:intron | 35.0% | |
| ATTTAGAAGTAGATGTGGAC+GGG | - | tig0027682:24033-24052 | Msa1435240:intron | 35.0% | |
| CATCTTATATACATGAGCAG+AGG | + | tig0027682:24079-24098 | None:intergenic | 35.0% | |
| TTCATTTAGCAGTAGGAATG+TGG | - | tig0027682:24163-24182 | Msa1435240:intron | 35.0% | |
| TCATTTAGCAGTAGGAATGT+GGG | - | tig0027682:24164-24183 | Msa1435240:intron | 35.0% | |
| CAGATGAACGAATTTCCATT+TGG | + | tig0027682:24211-24230 | None:intergenic | 35.0% | |
| CTTGTGATAATAACTGTACG+AGG | + | tig0027682:24256-24275 | None:intergenic | 35.0% | |
| AGTTAGTTACCTTGCTTAGG+TGG | + | tig0027682:18347-18366 | None:intergenic | 40.0% | |
| TAACATTGTGCAATGAGTCG+TGG | - | tig0027682:18836-18855 | Msa1435240:CDS | 40.0% | |
| CCAAATATAAACATCCAGCC+TGG | + | tig0027682:18959-18978 | None:intergenic | 40.0% | |
| CCAGGCTGGATGTTTATATT+TGG | - | tig0027682:18956-18975 | Msa1435240:CDS | 40.0% | |
| GTAAGGAGTTGAGCAGTATA+AGG | + | tig0027682:18996-19015 | None:intergenic | 40.0% | |
| ACTGAAATCATCATATGCCG+AGG | - | tig0027682:19014-19033 | Msa1435240:intron | 40.0% | |
| !! | GTCCAAATATGATGATGGGA+AGG | - | tig0027682:19261-19280 | Msa1435240:CDS | 40.0% |
| GTCCTTCCCATCATCATATT+TGG | + | tig0027682:19266-19285 | None:intergenic | 40.0% | |
| ! | CTTTTGTTGGCATCATCATG+TGG | + | tig0027682:19328-19347 | None:intergenic | 40.0% |
| ATACTTGCAGGTAACACTTC+TGG | - | tig0027682:19384-19403 | Msa1435240:CDS | 40.0% | |
| !!! | GTTTTCTTGATGGACTGGTT+TGG | - | tig0027682:19544-19563 | Msa1435240:CDS | 40.0% |
| ATTTAGATAGCTGCGAACCT+AGG | - | tig0027682:20083-20102 | Msa1435240:intron | 40.0% | |
| TTTAGATAGCTGCGAACCTA+GGG | - | tig0027682:20084-20103 | Msa1435240:intron | 40.0% | |
| TGAGTTGCAAAACTTGCAAG+TGG | - | tig0027682:20136-20155 | Msa1435240:intron | 40.0% | |
| CATGGCAAGCTTAGGAAATT+TGG | - | tig0027682:20440-20459 | Msa1435240:intron | 40.0% | |
| GACAGAAGAAGGTAAGATGA+AGG | - | tig0027682:20575-20594 | Msa1435240:intron | 40.0% | |
| TACACTATGGCTCAGAGTTA+TGG | + | tig0027682:20740-20759 | None:intergenic | 40.0% | |
| TTAACTGTTCAACCTGAGAG+CGG | + | tig0027682:20845-20864 | None:intergenic | 40.0% | |
| !! | CTCTCAGGTTGAACAGTTAA+GGG | - | tig0027682:20845-20864 | Msa1435240:intron | 40.0% |
| GAAGGGTTATTGTCTATCGT+TGG | - | tig0027682:21098-21117 | Msa1435240:intron | 40.0% | |
| TGTAGTGCATTATGAGTCTC+AGG | + | tig0027682:21148-21167 | None:intergenic | 40.0% | |
| TGAAAAGTTTGGGTAGAGCA+CGG | + | tig0027682:21404-21423 | None:intergenic | 40.0% | |
| GGGAAGCCTAATGAAAAGTT+TGG | + | tig0027682:21415-21434 | None:intergenic | 40.0% | |
| ! | TCATAAAAGGTACATGTGCG+AGG | + | tig0027682:21724-21743 | None:intergenic | 40.0% |
| TGATGCAAAGATGTGAGCAA+AGG | + | tig0027682:22382-22401 | None:intergenic | 40.0% | |
| ACAAAAGATTAACAGTGGCG+GGG | + | tig0027682:22437-22456 | None:intergenic | 40.0% | |
| ! | GAGTCGTGAAACAATTTTGC+AGG | + | tig0027682:22463-22482 | None:intergenic | 40.0% |
| AAGACATTAAGGGAGGTAGT+TGG | - | tig0027682:22641-22660 | Msa1435240:intron | 40.0% | |
| GGTAGTTGGCAACTCAATTA+AGG | - | tig0027682:22655-22674 | Msa1435240:intron | 40.0% | |
| ACCAGCCATTGCTTATAGAT+AGG | - | tig0027682:22853-22872 | Msa1435240:intron | 40.0% | |
| TCCTATCTATAAGCAATGGC+TGG | + | tig0027682:22857-22876 | None:intergenic | 40.0% | |
| ACCTGATGAAAGCCATTTGT+CGG | + | tig0027682:23098-23117 | None:intergenic | 40.0% | |
| CTGGACAGCTTAATAACACA+TGG | - | tig0027682:23368-23387 | Msa1435240:intron | 40.0% | |
| TCATTTCAGTGTATAGCTCC+TGG | - | tig0027682:23567-23586 | Msa1435240:CDS | 40.0% | |
| CATTTCAGTGTATAGCTCCT+GGG | - | tig0027682:23568-23587 | Msa1435240:CDS | 40.0% | |
| TCAATGTTTCCGATGGATCA+AGG | - | tig0027682:23604-23623 | Msa1435240:CDS | 40.0% | |
| ATCACACAAAAGCGAACGTT+GGG | + | tig0027682:23644-23663 | None:intergenic | 40.0% | |
| AATCACACAAAAGCGAACGT+TGG | + | tig0027682:23645-23664 | None:intergenic | 40.0% | |
| !! | AACGTTCGCTTTTGTGTGAT+TGG | - | tig0027682:23644-23663 | Msa1435240:CDS | 40.0% |
| TTTGTGTGATTGGAGATGGA+TGG | - | tig0027682:23654-23673 | Msa1435240:CDS | 40.0% | |
| TTGTGTGATTGGAGATGGAT+GGG | - | tig0027682:23655-23674 | Msa1435240:CDS | 40.0% | |
| !! | CGCGGGTCAATTTTAACAAA+CGG | + | tig0027682:23713-23732 | None:intergenic | 40.0% |
| ! | GAAATAGTGGCCAACTGTTT+TGG | + | tig0027682:23771-23790 | None:intergenic | 40.0% |
| GGGAAAAAAAAACAGCAGCA+TGG | - | tig0027682:23889-23908 | Msa1435240:intron | 40.0% | |
| GCCACAACTTAGATGTTAAC+GGG | - | tig0027682:23956-23975 | Msa1435240:intron | 40.0% | |
| ACCCGTTAACATCTAAGTTG+TGG | + | tig0027682:23960-23979 | None:intergenic | 40.0% | |
| AAAGGTGAGATATGATGAGC+TGG | + | tig0027682:24139-24158 | None:intergenic | 40.0% | |
| AAATTCGTTCATCTGCAGTC+TGG | - | tig0027682:24216-24235 | Msa1435240:intron | 40.0% | |
| TGCGATGTGTTTGACAACAC+CGG | - | tig0027682:18772-18791 | Msa1435240:exon | 45.0% | |
| ! | AGTCGTGGTGTTTTTCTGCA+GGG | - | tig0027682:18851-18870 | Msa1435240:CDS | 45.0% |
| TATAAACATCCAGCCTGGGA+TGG | + | tig0027682:18954-18973 | None:intergenic | 45.0% | |
| TCATATGCCGAGGCTTTCAA+CGG | - | tig0027682:19024-19043 | Msa1435240:intron | 45.0% | |
| TTTCAGACCGTTGAAAGCCT+CGG | + | tig0027682:19034-19053 | None:intergenic | 45.0% | |
| GGTCTGAAAGATGTGCAGAA+AGG | - | tig0027682:19045-19064 | Msa1435240:intron | 45.0% | |
| !! | TGGAGAGTTAGTTTGGTGTC+CGG | - | tig0027682:19189-19208 | Msa1435240:intron | 45.0% |
| TGTTGGCATCATCATGTGGA+GGG | + | tig0027682:19324-19343 | None:intergenic | 45.0% | |
| TTGTTGGCATCATCATGTGG+AGG | + | tig0027682:19325-19344 | None:intergenic | 45.0% | |
| CACAGCAAAATACCATCCCT+AGG | + | tig0027682:20103-20122 | None:intergenic | 45.0% | |
| CATCAAGACATGGCAAGCTT+AGG | - | tig0027682:20432-20451 | Msa1435240:intron | 45.0% | |
| GAAGAAGGTAAGATGAAGGG+AGG | - | tig0027682:20579-20598 | Msa1435240:intron | 45.0% | |
| CACATTAGTTATCCGCTCTC+AGG | - | tig0027682:20830-20849 | Msa1435240:intron | 45.0% | |
| !! | GCTCTCAGGTTGAACAGTTA+AGG | - | tig0027682:20844-20863 | Msa1435240:intron | 45.0% |
| ! | CAGGTTGAACAGTTAAGGGT+CGG | - | tig0027682:20849-20868 | Msa1435240:intron | 45.0% |
| AAAGAGAAGCTCTTCGTTCC+CGG | - | tig0027682:20941-20960 | Msa1435240:intron | 45.0% | |
| TAGGATTCTAGTGGTTCCGT+AGG | + | tig0027682:20984-21003 | None:intergenic | 45.0% | |
| AAGTTGTAAGCTGTGCTCGA+AGG | - | tig0027682:21080-21099 | Msa1435240:intron | 45.0% | |
| AGTTGTAAGCTGTGCTCGAA+GGG | - | tig0027682:21081-21100 | Msa1435240:intron | 45.0% | |
| ! | TTGTCTATCGTTGGCCTCTA+TGG | - | tig0027682:21107-21126 | Msa1435240:intron | 45.0% |
| CCTCTATGGTAGAACCAGTT+GGG | - | tig0027682:21121-21140 | Msa1435240:intron | 45.0% | |
| CTCTATGGTAGAACCAGTTG+GGG | - | tig0027682:21122-21141 | Msa1435240:intron | 45.0% | |
| GAAAAGTTTGGGTAGAGCAC+GGG | + | tig0027682:21403-21422 | None:intergenic | 45.0% | |
| TCTACAAAACCAGCCCCATT+TGG | + | tig0027682:22152-22171 | None:intergenic | 45.0% | |
| TAATGTTAACCAGTGCCCCT+GGG | + | tig0027682:22301-22320 | None:intergenic | 45.0% | |
| ACCGACAAATGGCTTTCATC+AGG | - | tig0027682:23094-23113 | Msa1435240:intron | 45.0% | |
| ! | TTGAATTTTCCCCACTTCCC+AGG | + | tig0027682:23588-23607 | None:intergenic | 45.0% |
| TGAAACGCTCCTTGATCCAT+CGG | + | tig0027682:23616-23635 | None:intergenic | 45.0% | |
| ! | CGCTTTTGTGTGATTGGAGA+TGG | - | tig0027682:23650-23669 | Msa1435240:CDS | 45.0% |
| ! | TATGAGATTTTCCTGGTCGC+GGG | + | tig0027682:23730-23749 | None:intergenic | 45.0% |
| ! | CTATGAGATTTTCCTGGTCG+CGG | + | tig0027682:23731-23750 | None:intergenic | 45.0% |
| ! | GGGAACCTATGAGATTTTCC+TGG | + | tig0027682:23737-23756 | None:intergenic | 45.0% |
| GGAAAATCTCATAGGTTCCC+TGG | - | tig0027682:23737-23756 | Msa1435240:intron | 45.0% | |
| ! | AGTTGGCCACTATTTCTCTG+TGG | - | tig0027682:23775-23794 | Msa1435240:intron | 45.0% |
| ACAGACAGGATCACGGAAAA+GGG | + | tig0027682:23853-23872 | None:intergenic | 45.0% | |
| AACAGACAGGATCACGGAAA+AGG | + | tig0027682:23854-23873 | None:intergenic | 45.0% | |
| TCCTGTCTGTTGCCCAAAAA+AGG | - | tig0027682:23863-23882 | Msa1435240:intron | 45.0% | |
| CCTGTCTGTTGCCCAAAAAA+GGG | - | tig0027682:23864-23883 | Msa1435240:intron | 45.0% | |
| TCTGTTGCCCAAAAAAGGGA+AGG | - | tig0027682:23868-23887 | Msa1435240:intron | 45.0% | |
| CTGTTGCCCAAAAAAGGGAA+GGG | - | tig0027682:23869-23888 | Msa1435240:intron | 45.0% | |
| ATGAGCTGGTGACCAAGATA+AGG | + | tig0027682:24125-24144 | None:intergenic | 45.0% | |
| !! | TGATAAAATAAATATTTAAA+TGG | - | tig0027682:20520-20539 | Msa1435240:intron | 5.0% |
| !!! | AATAAATATTTAAGTTTTAA+AGG | + | tig0027682:20655-20674 | None:intergenic | 5.0% |
| TCTCTGCAACCACCTAAGCA+AGG | - | tig0027682:18335-18354 | Msa1435240:three_prime_UTR | 50.0% | |
| ! | GAGTCGTGGTGTTTTTCTGC+AGG | - | tig0027682:18850-18869 | Msa1435240:CDS | 50.0% |
| ! | TTTTTCTGCAGGGCACAGCT+AGG | - | tig0027682:18861-18880 | Msa1435240:CDS | 50.0% |
| GCACAGCTAGGTTAGTGGAA+TGG | - | tig0027682:18873-18892 | Msa1435240:CDS | 50.0% | |
| CAGCTAGGTTAGTGGAATGG+CGG | - | tig0027682:18876-18895 | Msa1435240:CDS | 50.0% | |
| !! | TGCAGAAAGGTGTCGAGCTT+GGG | - | tig0027682:19058-19077 | Msa1435240:intron | 50.0% |
| GTGGAGGGCCTAATTCATCT+TGG | + | tig0027682:19309-19328 | None:intergenic | 50.0% | |
| CTTAAGAGCAAAGAGTCGGG+CGG | - | tig0027682:20911-20930 | Msa1435240:intron | 50.0% | |
| TCTCCTGTAGCTGGATCCTA+CGG | - | tig0027682:20965-20984 | Msa1435240:intron | 50.0% | |
| GCCTCTATGGTAGAACCAGT+TGG | - | tig0027682:21120-21139 | Msa1435240:intron | 50.0% | |
| !! | CCCAACTGGTTCTACCATAG+AGG | + | tig0027682:21124-21143 | None:intergenic | 50.0% |
| AACTCCTGCCACTGCCAAAT+GGG | - | tig0027682:22135-22154 | Msa1435240:intron | 50.0% | |
| GTAATGTTAACCAGTGCCCC+TGG | + | tig0027682:22302-22321 | None:intergenic | 50.0% | |
| ACCAGAACACTCCGTCAAAC+AGG | + | tig0027682:23210-23229 | None:intergenic | 50.0% | |
| AGTGTATAGCTCCTGGGAAG+TGG | - | tig0027682:23574-23593 | Msa1435240:CDS | 50.0% | |
| GTGTATAGCTCCTGGGAAGT+GGG | - | tig0027682:23575-23594 | Msa1435240:CDS | 50.0% | |
| TGTATAGCTCCTGGGAAGTG+GGG | - | tig0027682:23576-23595 | Msa1435240:CDS | 50.0% | |
| CACAAAAGCGAACGTTGGGA+TGG | + | tig0027682:23640-23659 | None:intergenic | 50.0% | |
| GTTAAAATTGACCCGCGACC+AGG | - | tig0027682:23716-23735 | Msa1435240:intron | 50.0% | |
| CGCGACCAGGAAAATCTCAT+AGG | - | tig0027682:23729-23748 | Msa1435240:intron | 50.0% | |
| !! | CTGTTTTGGATGTGAGGCCA+GGG | + | tig0027682:23757-23776 | None:intergenic | 50.0% |
| !! | ACTGTTTTGGATGTGAGGCC+AGG | + | tig0027682:23758-23777 | None:intergenic | 50.0% |
| GGCCTCACATCCAAAACAGT+TGG | - | tig0027682:23758-23777 | Msa1435240:intron | 50.0% | |
| !! | GGCCAACTGTTTTGGATGTG+AGG | + | tig0027682:23763-23782 | None:intergenic | 50.0% |
| TTGGGCAACAGACAGGATCA+CGG | + | tig0027682:23860-23879 | None:intergenic | 50.0% | |
| !!! | CCCTTTTTTGGGCAACAGAC+AGG | + | tig0027682:23867-23886 | None:intergenic | 50.0% |
| AAGTTGTGGCAGCCATCACA+TGG | + | tig0027682:23946-23965 | None:intergenic | 50.0% | |
| AGTGGAATGGCGGTTGCATC+TGG | - | tig0027682:18886-18905 | Msa1435240:CDS | 55.0% | |
| GTGGAATGGCGGTTGCATCT+GGG | - | tig0027682:18887-18906 | Msa1435240:CDS | 55.0% | |
| GGATGAGGGCGGATGAAACA+CGG | - | tig0027682:18908-18927 | Msa1435240:CDS | 55.0% | |
| GATGAGGGCGGATGAAACAC+GGG | - | tig0027682:18909-18928 | Msa1435240:CDS | 55.0% | |
| CCTGGGATGGATGTTGTCAC+TGG | + | tig0027682:18941-18960 | None:intergenic | 55.0% | |
| CCAGTGACAACATCCATCCC+AGG | - | tig0027682:18938-18957 | Msa1435240:CDS | 55.0% | |
| TGACAACATCCATCCCAGGC+TGG | - | tig0027682:18942-18961 | Msa1435240:CDS | 55.0% | |
| !! | GTGCAGAAAGGTGTCGAGCT+TGG | - | tig0027682:19057-19076 | Msa1435240:intron | 55.0% |
| TGTCGAGCTTGGGAAGACGT+GGG | - | tig0027682:19068-19087 | Msa1435240:intron | 55.0% | |
| GATAGCTGCGAACCTAGGGA+TGG | - | tig0027682:20088-20107 | Msa1435240:intron | 55.0% | |
| GATCCAGCTACAGGAGAACC+GGG | + | tig0027682:20962-20981 | None:intergenic | 55.0% | |
| GGATCCAGCTACAGGAGAAC+CGG | + | tig0027682:20963-20982 | None:intergenic | 55.0% | |
| GTTCCGTAGGATCCAGCTAC+AGG | + | tig0027682:20971-20990 | None:intergenic | 55.0% | |
| TATGAGTCTCAGGCCCCAAC+TGG | + | tig0027682:21138-21157 | None:intergenic | 55.0% | |
| GAACTCCTGCCACTGCCAAA+TGG | - | tig0027682:22134-22153 | Msa1435240:intron | 55.0% | |
| ACTCCTGCCACTGCCAAATG+GGG | - | tig0027682:22136-22155 | Msa1435240:intron | 55.0% | |
| AAACCAGCCCCATTTGGCAG+TGG | + | tig0027682:22146-22165 | None:intergenic | 55.0% | |
| ! | GACACTGGTTAAGGGGACAC+CGG | + | tig0027682:22279-22298 | None:intergenic | 55.0% |
| TCCCCTTAACCAGTGTCCCA+GGG | - | tig0027682:22282-22301 | Msa1435240:intron | 55.0% | |
| TTCAGCACGGGCCTGTTTGA+CGG | - | tig0027682:23196-23215 | Msa1435240:intron | 55.0% | |
| ! | GCCTGTTTGACGGAGTGTTC+TGG | - | tig0027682:23206-23225 | Msa1435240:intron | 55.0% |
| GCAGGGCACAGCTAGGTTAG+TGG | - | tig0027682:18868-18887 | Msa1435240:CDS | 60.0% | |
| ! | TGGCGGTTGCATCTGGGATG+AGG | - | tig0027682:18893-18912 | Msa1435240:CDS | 60.0% |
| ! | GGCGGTTGCATCTGGGATGA+GGG | - | tig0027682:18894-18913 | Msa1435240:CDS | 60.0% |
| ! | GGTTGCATCTGGGATGAGGG+CGG | - | tig0027682:18897-18916 | Msa1435240:CDS | 60.0% |
| GTGTCGAGCTTGGGAAGACG+TGG | - | tig0027682:19067-19086 | Msa1435240:intron | 60.0% | |
| GTTCCCGGTTCTCCTGTAGC+TGG | - | tig0027682:20956-20975 | Msa1435240:intron | 60.0% | |
| GTCCCCTTAACCAGTGTCCC+AGG | - | tig0027682:22281-22300 | Msa1435240:intron | 60.0% | |
| ! | CCCCTGGGACACTGGTTAAG+GGG | + | tig0027682:22286-22305 | None:intergenic | 60.0% |
| CCCCTTAACCAGTGTCCCAG+GGG | - | tig0027682:22283-22302 | Msa1435240:intron | 60.0% | |
| ! | GCCCCTGGGACACTGGTTAA+GGG | + | tig0027682:22287-22306 | None:intergenic | 60.0% |
| ! | TGCCCCTGGGACACTGGTTA+AGG | + | tig0027682:22288-22307 | None:intergenic | 60.0% |
| CAGCCCCATTTGGCAGTGGC+AGG | + | tig0027682:22142-22161 | None:intergenic | 65.0% | |
| CTGCCACTGCCAAATGGGGC+TGG | - | tig0027682:22140-22159 | Msa1435240:intron | 65.0% | |
| ! | AACCAGTGTCCCAGGGGCAC+TGG | - | tig0027682:22289-22308 | Msa1435240:intron | 65.0% |
| AACCAGTGCCCCTGGGACAC+TGG | + | tig0027682:22294-22313 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027682 | gene | 18286 | 24320 | 18286 | ID=Msa1435240;Name=Msa1435240 |
| tig0027682 | mRNA | 18286 | 24320 | 18286 | ID=Msa1435240-mRNA-1;Parent=Msa1435240;Name=Msa1435240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=91|1|1|1|0.5|0.42|7|435|318 |
| tig0027682 | exon | 18286 | 18372 | 18286 | ID=Msa1435240-mRNA-1:exon:9574;Parent=Msa1435240-mRNA-1 |
| tig0027682 | exon | 18429 | 19030 | 18429 | ID=Msa1435240-mRNA-1:exon:9573;Parent=Msa1435240-mRNA-1 |
| tig0027682 | exon | 19211 | 19405 | 19211 | ID=Msa1435240-mRNA-1:exon:9572;Parent=Msa1435240-mRNA-1 |
| tig0027682 | exon | 19491 | 19584 | 19491 | ID=Msa1435240-mRNA-1:exon:9571;Parent=Msa1435240-mRNA-1 |
| tig0027682 | exon | 23213 | 23380 | 23213 | ID=Msa1435240-mRNA-1:exon:9570;Parent=Msa1435240-mRNA-1 |
| tig0027682 | exon | 23469 | 23734 | 23469 | ID=Msa1435240-mRNA-1:exon:9569;Parent=Msa1435240-mRNA-1 |
| tig0027682 | exon | 24250 | 24320 | 24250 | ID=Msa1435240-mRNA-1:exon:9568;Parent=Msa1435240-mRNA-1 |
| tig0027682 | five_prime_UTR | 24250 | 24320 | 24250 | ID=Msa1435240-mRNA-1:five_prime_utr;Parent=Msa1435240-mRNA-1 |
| tig0027682 | five_prime_UTR | 23715 | 23734 | 23715 | ID=Msa1435240-mRNA-1:five_prime_utr;Parent=Msa1435240-mRNA-1 |
| tig0027682 | CDS | 23469 | 23714 | 23469 | ID=Msa1435240-mRNA-1:cds;Parent=Msa1435240-mRNA-1 |
| tig0027682 | CDS | 23213 | 23380 | 23213 | ID=Msa1435240-mRNA-1:cds;Parent=Msa1435240-mRNA-1 |
| tig0027682 | CDS | 19491 | 19584 | 19491 | ID=Msa1435240-mRNA-1:cds;Parent=Msa1435240-mRNA-1 |
| tig0027682 | CDS | 19211 | 19405 | 19211 | ID=Msa1435240-mRNA-1:cds;Parent=Msa1435240-mRNA-1 |
| tig0027682 | CDS | 18777 | 19030 | 18777 | ID=Msa1435240-mRNA-1:cds;Parent=Msa1435240-mRNA-1 |
| tig0027682 | three_prime_UTR | 18429 | 18776 | 18429 | ID=Msa1435240-mRNA-1:three_prime_utr;Parent=Msa1435240-mRNA-1 |
| tig0027682 | three_prime_UTR | 18286 | 18372 | 18286 | ID=Msa1435240-mRNA-1:three_prime_utr;Parent=Msa1435240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
