Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426890 | XP_003608623.4 | 95.283 | 318 | 15 | 0 | 1 | 318 | 1 | 318 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426890 | sp|O82162|EYA_ARATH | 59.727 | 293 | 110 | 1 | 24 | 316 | 19 | 303 | 8.78e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426890 | I3S9D7 | 95.283 | 318 | 15 | 0 | 1 | 318 | 1 | 318 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1385770 | Msa1426890 | 0.809884 | 1.517651e-50 | -8.615850e-47 |
| Msa1409240 | Msa1426890 | 0.810988 | 8.764014e-51 | -8.615850e-47 |
| Msa1426890 | Msa1434140 | 0.815178 | 1.055798e-51 | -8.615850e-47 |
| Msa1426890 | Msa1435240 | 0.997026 | 9.467222e-236 | -8.615850e-47 |
| Msa1426890 | Msa1440200 | 0.835351 | 1.764928e-56 | -8.615850e-47 |
| Msa0194950 | Msa1426890 | -0.805457 | 1.322868e-49 | -8.615850e-47 |
| Msa0236960 | Msa1426890 | -0.818173 | 2.250007e-52 | -8.615850e-47 |
| Msa1250510 | Msa1426890 | 0.994300 | 3.890845e-206 | -8.615850e-47 |
| Msa1297510 | Msa1426890 | 0.986247 | 3.735787e-166 | -8.615850e-47 |
| Msa1297570 | Msa1426890 | 0.955503 | 2.608359e-113 | -8.615850e-47 |
| Msa0398670 | Msa1426890 | 0.812151 | 4.898087e-51 | -8.615850e-47 |
| Msa0295710 | Msa1426890 | 0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0304960 | Msa1426890 | 0.801858 | 7.382243e-49 | -8.615850e-47 |
| Msa0315440 | Msa1426890 | -0.805974 | 1.029954e-49 | -8.615850e-47 |
| Msa0934850 | Msa1426890 | 0.843305 | 1.520600e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426890 | MtrunA17_Chr4g0054711 | 95.283 | 318 | 15 | 0 | 1 | 318 | 1 | 318 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426890 | AT2G35320.1 | 59.727 | 293 | 110 | 1 | 24 | 316 | 19 | 303 | 8.93e-134 | 382 |
Find 99 sgRNAs with CRISPR-Local
Find 371 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGCTGGATGTTTATATT+TGG | 0.134573 | tig0026083:-35851 | Msa1426890:CDS |
| GTCCTTCCCATCATCATATT+TGG | 0.167846 | tig0026083:+35544 | None:intergenic |
| GAAATAGTGGCCAACTGTTT+TGG | 0.272876 | tig0026083:+31039 | None:intergenic |
| AGTGGAATGGCGGTTGCATC+TGG | 0.283682 | tig0026083:-35921 | Msa1426890:exon |
| GTTATAAGCAAGTTTGCTTT+TGG | 0.309186 | tig0026083:-30510 | Msa1426890:three_prime_UTR |
| GTAAGGAGTTGAGCAGTATA+AGG | 0.313569 | tig0026083:+35814 | None:intergenic |
| CAGGCTGGATGTTTATATTT+GGG | 0.326293 | tig0026083:-35850 | Msa1426890:CDS |
| TCTTCGTCATTGTCATTGTT+TGG | 0.328913 | tig0026083:+31004 | None:intergenic |
| TACTGCTAAATGAACGATAA+AGG | 0.355011 | tig0026083:+30653 | None:intergenic |
| GACTTCAACCAAGATGAATT+AGG | 0.355911 | tig0026083:-35509 | Msa1426890:CDS |
| ATCAGGAGACAATAAAAGTA+TGG | 0.360230 | tig0026083:-31766 | Msa1426890:CDS |
| AAAATGCTTGCTCTTTCATC+TGG | 0.365350 | tig0026083:-31458 | Msa1426890:CDS |
| GCCTGTTTGACGGAGTGTTC+TGG | 0.403472 | tig0026083:-31601 | Msa1426890:CDS |
| TGGCGGTTGCATCTGGGATG+AGG | 0.421814 | tig0026083:-35914 | Msa1426890:CDS |
| GTTAGTTAGTTACCTTGCTT+AGG | 0.429764 | tig0026083:+36460 | None:intergenic |
| TATACACATGGCAACACAAT+TGG | 0.430793 | tig0026083:+30895 | None:intergenic |
| ACAAAAGAAAACTTGCATAT+AGG | 0.431167 | tig0026083:-35466 | Msa1426890:CDS |
| TGCAGAAAGGTGTCGAGCTT+GGG | 0.436778 | tig0026083:-35749 | Msa1426890:CDS |
| GTTAAAATTGACCCGCGACC+AGG | 0.438397 | tig0026083:-31091 | Msa1426890:CDS |
| TTGGACAGAACATCAAGAAA+TGG | 0.442699 | tig0026083:+35563 | None:intergenic |
| ACCAGAACACTCCGTCAAAC+AGG | 0.443403 | tig0026083:+31600 | None:intergenic |
| TATATATATGAACCTTATCT+TGG | 0.449587 | tig0026083:-30697 | Msa1426890:three_prime_UTR |
| TCATTTCAGTGTATAGCTCC+TGG | 0.451230 | tig0026083:-31240 | Msa1426890:intron |
| TTCAGCACGGGCCTGTTTGA+CGG | 0.451891 | tig0026083:-31611 | Msa1426890:intron |
| CTGATGAATATACCGACAAA+TGG | 0.459678 | tig0026083:-31724 | Msa1426890:CDS |
| GCCACAACTTAGATGTTAAC+GGG | 0.461271 | tig0026083:-30851 | Msa1426890:three_prime_UTR |
| AACAGACAGGATCACGGAAA+AGG | 0.467858 | tig0026083:+30956 | None:intergenic |
| TGCCACAACTTAGATGTTAA+CGG | 0.467936 | tig0026083:-30852 | Msa1426890:three_prime_UTR |
| TCAATGTTTCCGATGGATCA+AGG | 0.468622 | tig0026083:-31203 | Msa1426890:CDS |
| ATCACACAAAAGCGAACGTT+GGG | 0.471747 | tig0026083:+31166 | None:intergenic |
| GTGCAGAAAGGTGTCGAGCT+TGG | 0.477963 | tig0026083:-35750 | Msa1426890:CDS |
| TAAGGAGTTGAGCAGTATAA+GGG | 0.478805 | tig0026083:+35815 | None:intergenic |
| GATATACCACAGAGAAATAG+TGG | 0.480780 | tig0026083:+31026 | None:intergenic |
| ACCTGATGAAAGCCATTTGT+CGG | 0.482110 | tig0026083:+31712 | None:intergenic |
| AGTGTATAGCTCCTGGGAAG+TGG | 0.483068 | tig0026083:-31233 | Msa1426890:CDS |
| GCAGGGCACAGCTAGGTTAG+TGG | 0.485399 | tig0026083:-35939 | Msa1426890:intron |
| ACCGACAAATGGCTTTCATC+AGG | 0.486588 | tig0026083:-31713 | Msa1426890:intron |
| GTGGAGGGCCTAATTCATCT+TGG | 0.487188 | tig0026083:+35501 | None:intergenic |
| AGTTAGTTACCTTGCTTAGG+TGG | 0.492131 | tig0026083:+36463 | None:intergenic |
| AGCTTAATAACACATGGAAA+TGG | 0.499983 | tig0026083:-31433 | Msa1426890:intron |
| CCAAATATAAACATCCAGCC+TGG | 0.501450 | tig0026083:+35851 | None:intergenic |
| ACAGACAGGATCACGGAAAA+GGG | 0.508964 | tig0026083:+30957 | None:intergenic |
| GGCGGTTGCATCTGGGATGA+GGG | 0.510055 | tig0026083:-35913 | Msa1426890:CDS |
| TTTATCGTTCATTTAGCAGT+AGG | 0.512601 | tig0026083:-30651 | Msa1426890:intron |
| GTGTATAGCTCCTGGGAAGT+GGG | 0.525965 | tig0026083:-31232 | Msa1426890:CDS |
| TGTTGGCATCATCATGTGGA+GGG | 0.526573 | tig0026083:+35486 | None:intergenic |
| GGAAAATTCAATGTTTCCGA+TGG | 0.526933 | tig0026083:-31210 | Msa1426890:CDS |
| GTTCTGTCCAAATATGATGA+TGG | 0.527183 | tig0026083:-35551 | Msa1426890:CDS |
| CGCGACCAGGAAAATCTCAT+AGG | 0.528352 | tig0026083:-31078 | Msa1426890:CDS |
| TTGTGTGATTGGAGATGGAT+GGG | 0.529397 | tig0026083:-31152 | Msa1426890:CDS |
| GGATGAGGGCGGATGAAACA+CGG | 0.531138 | tig0026083:-35899 | Msa1426890:CDS |
| GGTTGAAGTCATAATCAGAT+AGG | 0.531324 | tig0026083:+35522 | None:intergenic |
| CCTGGGATGGATGTTGTCAC+TGG | 0.532753 | tig0026083:+35869 | None:intergenic |
| GGAAAATCTCATAGGTTCCC+TGG | 0.533790 | tig0026083:-31070 | Msa1426890:CDS |
| TTGTTGGCATCATCATGTGG+AGG | 0.540277 | tig0026083:+35485 | None:intergenic |
| AAGCTGCAGAAATCATGAAA+TGG | 0.540685 | tig0026083:-31120 | Msa1426890:CDS |
| GTGGAATGGCGGTTGCATCT+GGG | 0.541648 | tig0026083:-35920 | Msa1426890:exon |
| TGAAACGCTCCTTGATCCAT+CGG | 0.542051 | tig0026083:+31194 | None:intergenic |
| AGTTGAGTCTGTGCTTGTGT+TGG | 0.545298 | tig0026083:+31543 | None:intergenic |
| GTGTCGAGCTTGGGAAGACG+TGG | 0.551286 | tig0026083:-35740 | Msa1426890:CDS |
| TTTCAGACCGTTGAAAGCCT+CGG | 0.551738 | tig0026083:+35776 | None:intergenic |
| CATTTCAGTGTATAGCTCCT+GGG | 0.553970 | tig0026083:-31239 | Msa1426890:intron |
| TGACAACATCCATCCCAGGC+TGG | 0.557450 | tig0026083:-35865 | Msa1426890:CDS |
| CTGGACAGCTTAATAACACA+TGG | 0.559956 | tig0026083:-31439 | Msa1426890:CDS |
| GGATGTTTATATTTGGGACA+TGG | 0.560493 | tig0026083:-35844 | Msa1426890:CDS |
| ATTTAGAAGTAGATGTGGAC+GGG | 0.563466 | tig0026083:-30774 | Msa1426890:three_prime_UTR |
| TATAAACATCCAGCCTGGGA+TGG | 0.563931 | tig0026083:+35856 | None:intergenic |
| GGCATATGATGATTTCAGTA+AGG | 0.564789 | tig0026083:+35797 | None:intergenic |
| TTTGTGTGATTGGAGATGGA+TGG | 0.565338 | tig0026083:-31153 | Msa1426890:CDS |
| ATGAGCTGGTGACCAAGATA+AGG | 0.570199 | tig0026083:+30685 | None:intergenic |
| CACAAATTTAGAAGTAGATG+TGG | 0.570200 | tig0026083:-30779 | Msa1426890:three_prime_UTR |
| GGCCTCACATCCAAAACAGT+TGG | 0.572986 | tig0026083:-31049 | Msa1426890:CDS |
| TTCTGTCCAAATATGATGAT+GGG | 0.586519 | tig0026083:-35550 | Msa1426890:CDS |
| CAAATATAAACATCCAGCCT+GGG | 0.588832 | tig0026083:+35852 | None:intergenic |
| ACCCGTTAACATCTAAGTTG+TGG | 0.593787 | tig0026083:+30850 | None:intergenic |
| CACAAAAGCGAACGTTGGGA+TGG | 0.594094 | tig0026083:+31170 | None:intergenic |
| GGTTGCATCTGGGATGAGGG+CGG | 0.595621 | tig0026083:-35910 | Msa1426890:CDS |
| GATGAGGGCGGATGAAACAC+GGG | 0.597702 | tig0026083:-35898 | Msa1426890:CDS |
| GTCCAAATATGATGATGGGA+AGG | 0.598075 | tig0026083:-35546 | Msa1426890:CDS |
| CCAGTGACAACATCCATCCC+AGG | 0.601396 | tig0026083:-35869 | Msa1426890:CDS |
| TGTATAGCTCCTGGGAAGTG+GGG | 0.615041 | tig0026083:-31231 | Msa1426890:CDS |
| AAAGGTGAGATATGATGAGC+TGG | 0.618326 | tig0026083:+30671 | None:intergenic |
| TATATATTGATGCCATGTGA+TGG | 0.618870 | tig0026083:-30876 | Msa1426890:three_prime_UTR |
| GCACAGCTAGGTTAGTGGAA+TGG | 0.619207 | tig0026083:-35934 | Msa1426890:exon |
| AATCACACAAAAGCGAACGT+TGG | 0.620019 | tig0026083:+31165 | None:intergenic |
| TTGGGCAACAGACAGGATCA+CGG | 0.620213 | tig0026083:+30950 | None:intergenic |
| AATTTAGAAGTAGATGTGGA+CGG | 0.624181 | tig0026083:-30775 | Msa1426890:three_prime_UTR |
| AAGTTGTGGCAGCCATCACA+TGG | 0.624650 | tig0026083:+30864 | None:intergenic |
| GGTCTGAAAGATGTGCAGAA+AGG | 0.625906 | tig0026083:-35762 | Msa1426890:CDS |
| TCATATGCCGAGGCTTTCAA+CGG | 0.629640 | tig0026083:-35783 | Msa1426890:CDS |
| TTCTGGTGAAAATAAAGACG+TGG | 0.641960 | tig0026083:-31584 | Msa1426890:CDS |
| CAGCTAGGTTAGTGGAATGG+CGG | 0.653323 | tig0026083:-35931 | Msa1426890:exon |
| TCTCTGCAACCACCTAAGCA+AGG | 0.661296 | tig0026083:-36472 | Msa1426890:intron |
| ACTGAAATCATCATATGCCG+AGG | 0.664008 | tig0026083:-35793 | Msa1426890:CDS |
| CATCTTATATACATGAGCAG+AGG | 0.677676 | tig0026083:+30731 | None:intergenic |
| AGTTGGCCACTATTTCTCTG+TGG | 0.681956 | tig0026083:-31032 | Msa1426890:CDS |
| CTTGTGATAATAACTGTACG+AGG | 0.682279 | tig0026083:+30554 | None:intergenic |
| TGTCGAGCTTGGGAAGACGT+GGG | 0.694651 | tig0026083:-35739 | Msa1426890:CDS |
| ATGGCATCAATATATACACA+TGG | 0.727755 | tig0026083:+30883 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAATAAAAAATT+GGG | + | tig0026083:33923-33942 | None:intergenic | 0.0% |
| !! | TTAAAAAAAAAATAAAAAAT+TGG | + | tig0026083:33924-33943 | None:intergenic | 0.0% |
| !!! | AAACTTATATTTTTAAACAA+GGG | + | tig0026083:32039-32058 | None:intergenic | 10.0% |
| !!! | AAATTTTGTATTTATTTCTA+TGG | - | tig0026083:32482-32501 | Msa1426890:intron | 10.0% |
| !!! | TCTTTATTTTCTAATATAAT+TGG | + | tig0026083:34019-34038 | None:intergenic | 10.0% |
| !! | ATTATATTAGAAAATAAAGA+AGG | - | tig0026083:34019-34038 | Msa1426890:intron | 10.0% |
| !!! | ATTATGATTATTGATTCAAA+TGG | + | tig0026083:31932-31951 | None:intergenic | 15.0% |
| !!! | GAAACTTATATTTTTAAACA+AGG | + | tig0026083:32040-32059 | None:intergenic | 15.0% |
| !!! | TTTCTAAAACATGATATTTT+TGG | - | tig0026083:32056-32075 | Msa1426890:intron | 15.0% |
| !!! | TTTTTACTTATCTATTATAC+TGG | - | tig0026083:32117-32136 | Msa1426890:intron | 15.0% |
| !!! | TATTTTCTAATATAATTGGA+AGG | + | tig0026083:34015-34034 | None:intergenic | 15.0% |
| !!! | ATTTGAAACAATTATGATAT+TGG | - | tig0026083:34773-34792 | Msa1426890:intron | 15.0% |
| !!! | TTTACATAATATTTTAGATC+AGG | - | tig0026083:35247-35266 | Msa1426890:intron | 15.0% |
| !! | TAAATATAACTAATACATAC+AGG | + | tig0026083:35384-35403 | None:intergenic | 15.0% |
| !! | AACTAGTAATCATATTATAT+TGG | - | tig0026083:35705-35724 | Msa1426890:CDS | 15.0% |
| !! | ACTAGTAATCATATTATATT+GGG | - | tig0026083:35706-35725 | Msa1426890:CDS | 15.0% |
| !! | ATAATGATGTCAATATTGAA+TGG | - | tig0026083:31018-31037 | Msa1426890:CDS | 20.0% |
| !! | CATAAAAGGAAACAATTATA+TGG | + | tig0026083:32015-32034 | None:intergenic | 20.0% |
| !!! | ATGATATTTTTGGTTTTACA+AGG | - | tig0026083:32066-32085 | Msa1426890:intron | 20.0% |
| !! | ACCATAATGTAATGTATATA+TGG | - | tig0026083:32156-32175 | Msa1426890:intron | 20.0% |
| !! | AATATACTAAGACAACATAT+AGG | + | tig0026083:32522-32541 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAACAGGATTCTA+TGG | + | tig0026083:33026-33045 | None:intergenic | 20.0% |
| !! | GAATCCTGTTAAAAAAATAA+CGG | - | tig0026083:33028-33047 | Msa1426890:intron | 20.0% |
| !! | AACATTACCTTAAAAAGTAA+AGG | - | tig0026083:33591-33610 | Msa1426890:intron | 20.0% |
| !! | ACATTACCTTAAAAAGTAAA+GGG | - | tig0026083:33592-33611 | Msa1426890:intron | 20.0% |
| !!! | AAAAGATTTTTTTTAACCTC+CGG | + | tig0026083:33877-33896 | None:intergenic | 20.0% |
| !!! | ATGATTATTGACTTCATAAA+AGG | + | tig0026083:33960-33979 | None:intergenic | 20.0% |
| !! | TAATGAAGATAAACAGATAT+TGG | + | tig0026083:34065-34084 | None:intergenic | 20.0% |
| !! | GTATCAGTATGAATAAAAAA+AGG | - | tig0026083:34114-34133 | Msa1426890:intron | 20.0% |
| !! | GGAATAATTATTGTTCAAAT+TGG | - | tig0026083:34135-34154 | Msa1426890:intron | 20.0% |
| !!! | AAGCACACTTTTTATTTTAA+GGG | + | tig0026083:34547-34566 | None:intergenic | 20.0% |
| !!! | TAAGCACACTTTTTATTTTA+AGG | + | tig0026083:34548-34567 | None:intergenic | 20.0% |
| !!! | GAATAAAAAGCACTAATTAA+TGG | - | tig0026083:34748-34767 | Msa1426890:intron | 20.0% |
| !! | ACTTACTATAAAAGCTTATT+AGG | + | tig0026083:35044-35063 | None:intergenic | 20.0% |
| !! | TTAAATGAAGTAAACTTGTA+TGG | + | tig0026083:35192-35211 | None:intergenic | 20.0% |
| !! | ATACAAGTTTACTTCATTTA+AGG | - | tig0026083:35191-35210 | Msa1426890:intron | 20.0% |
| !!! | TTGTTTTATATATTTCAGCA+CGG | - | tig0026083:35406-35425 | Msa1426890:intron | 20.0% |
| !!! | ATATGATTACTAGTTTTGAA+TGG | + | tig0026083:35700-35719 | None:intergenic | 20.0% |
| !! | CTAGTAATCATATTATATTG+GGG | - | tig0026083:35707-35726 | Msa1426890:CDS | 20.0% |
| !!! | TGAACTATTTTTATATGACA+TGG | - | tig0026083:36219-36238 | Msa1426890:intron | 20.0% |
| !! | TATATATATGAACCTTATCT+TGG | - | tig0026083:36333-36352 | Msa1426890:intron | 20.0% |
| ! | AAAAGTTGAAAATCACGATA+TGG | + | tig0026083:30633-30652 | None:intergenic | 25.0% |
| ! | CAGTTGAAAGAATAATTCAA+CGG | + | tig0026083:30770-30789 | None:intergenic | 25.0% |
| ! | TTGAATTATTCTTTCAACTG+AGG | - | tig0026083:30770-30789 | Msa1426890:three_prime_UTR | 25.0% |
| !!! | ATTATAGTTTTTTAGCTCAG+CGG | - | tig0026083:30949-30968 | Msa1426890:three_prime_UTR | 25.0% |
| ! | TCAATATTGACATCATTATC+CGG | + | tig0026083:31017-31036 | None:intergenic | 25.0% |
| !! | TCTTGTTCAAATATTTTCCA+TGG | - | tig0026083:31375-31394 | Msa1426890:intron | 25.0% |
| !! | ATATGCAAGTTTTCTTTTGT+TGG | + | tig0026083:31564-31583 | None:intergenic | 25.0% |
| ! | ACAAAAGAAAACTTGCATAT+AGG | - | tig0026083:31564-31583 | Msa1426890:CDS | 25.0% |
| ! | ATAAATGAATCAATTTCAGG+AGG | + | tig0026083:31728-31747 | None:intergenic | 25.0% |
| ! | CAGATAAATGAATCAATTTC+AGG | + | tig0026083:31731-31750 | None:intergenic | 25.0% |
| ! | AATGAACGAAATGTATAAAG+GGG | + | tig0026083:31909-31928 | None:intergenic | 25.0% |
| ! | GAATGAACGAAATGTATAAA+GGG | + | tig0026083:31910-31929 | None:intergenic | 25.0% |
| !! | TTTTAAACAAGGGTCATAAA+AGG | + | tig0026083:32029-32048 | None:intergenic | 25.0% |
| !! | ATTATGGTTTTCTAGATAGT+AGG | + | tig0026083:32144-32163 | None:intergenic | 25.0% |
| ! | GCCATATATACATTACATTA+TGG | + | tig0026083:32160-32179 | None:intergenic | 25.0% |
| ! | TAATGTATATATGGCTGAAA+TGG | - | tig0026083:32165-32184 | Msa1426890:intron | 25.0% |
| ! | CAGCTATCTAAATTAAGATT+AGG | + | tig0026083:32299-32318 | None:intergenic | 25.0% |
| ! | AGAAATAAACAAGTTATGAC+AGG | + | tig0026083:32400-32419 | None:intergenic | 25.0% |
| !!! | TATTTCTAGTATGTGATGAA+TGG | - | tig0026083:32413-32432 | Msa1426890:intron | 25.0% |
| !!! | CATGTTTTAGGTAAAATGAA+GGG | + | tig0026083:32604-32623 | None:intergenic | 25.0% |
| !!! | TCATGTTTTAGGTAAAATGA+AGG | + | tig0026083:32605-32624 | None:intergenic | 25.0% |
| !! | TGTCAACATTTTCATGTTTT+AGG | + | tig0026083:32616-32635 | None:intergenic | 25.0% |
| ! | CCTTTACTATATCTTCAATA+TGG | + | tig0026083:32719-32738 | None:intergenic | 25.0% |
| ! | CCATATTGAAGATATAGTAA+AGG | - | tig0026083:32716-32735 | Msa1426890:intron | 25.0% |
| !!! | TGTTCCGTTATTTTTTTAAC+AGG | + | tig0026083:33035-33054 | None:intergenic | 25.0% |
| ! | ACTCTTCTCAAAATATCAAA+AGG | + | tig0026083:33256-33275 | None:intergenic | 25.0% |
| !!! | TATGTACCCTTTACTTTTTA+AGG | + | tig0026083:33601-33620 | None:intergenic | 25.0% |
| !!! | CTATTTTTCTTACGTGATTT+AGG | + | tig0026083:33794-33813 | None:intergenic | 25.0% |
| !! | TCTTCGTTTTGTATAAATAC+CGG | - | tig0026083:33855-33874 | Msa1426890:intron | 25.0% |
| ! | TGCTTATTATGGAAATATGT+AGG | + | tig0026083:34165-34184 | None:intergenic | 25.0% |
| ! | ATATTTCCATAATAAGCATC+AGG | - | tig0026083:34167-34186 | Msa1426890:intron | 25.0% |
| ! | TCTTAAAAACGTTAGTTGTT+GGG | + | tig0026083:34282-34301 | None:intergenic | 25.0% |
| ! | ATCTTAAAAACGTTAGTTGT+TGG | + | tig0026083:34283-34302 | None:intergenic | 25.0% |
| ! | ACCCAACAACTATAAAAATA+GGG | - | tig0026083:34311-34330 | Msa1426890:intron | 25.0% |
| ! | ACATAGGGCTATTAAAATAA+AGG | - | tig0026083:34467-34486 | Msa1426890:intron | 25.0% |
| ! | TATGAAAGGACATTTACATT+TGG | - | tig0026083:34903-34922 | Msa1426890:intron | 25.0% |
| ! | ATGAAAGGACATTTACATTT+GGG | - | tig0026083:34904-34923 | Msa1426890:intron | 25.0% |
| ! | TATTGAGACTTAAAGAGTTA+TGG | - | tig0026083:35161-35180 | Msa1426890:intron | 25.0% |
| !! | TGTTTTATATATTTCAGCAC+GGG | - | tig0026083:35407-35426 | Msa1426890:intron | 25.0% |
| !!! | TATTTTTATATGACATGGCT+GGG | - | tig0026083:36224-36243 | Msa1426890:intron | 25.0% |
| TATAGTTACAGTTGAAGAGA+TGG | + | tig0026083:30607-30626 | None:intergenic | 30.0% | |
| GTAACTATCAACAATACACA+AGG | + | tig0026083:30901-30920 | None:intergenic | 30.0% | |
| !! | TGTATTGTTGATAGTTACAG+TGG | - | tig0026083:30903-30922 | Msa1426890:three_prime_UTR | 30.0% |
| TCAATCTGCAAAACAAAAAC+CGG | + | tig0026083:31434-31453 | None:intergenic | 30.0% | |
| TTCTGTCCAAATATGATGAT+GGG | - | tig0026083:31480-31499 | Msa1426890:CDS | 30.0% | |
| ! | TGTTACCTGCAAGTATTTTT+GGG | + | tig0026083:31603-31622 | None:intergenic | 30.0% |
| ATTGCTAAAGTCCATAACAT+GGG | - | tig0026083:31668-31687 | Msa1426890:intron | 30.0% | |
| AACAAGAATATCCCATGTTA+TGG | + | tig0026083:31682-31701 | None:intergenic | 30.0% | |
| TAGTCAGTTAGTCAAATAGT+TGG | - | tig0026083:31813-31832 | Msa1426890:intron | 30.0% | |
| GGAATGAACGAAATGTATAA+AGG | + | tig0026083:31911-31930 | None:intergenic | 30.0% | |
| AACTTCCAAAACATAGTGTT+TGG | - | tig0026083:32258-32277 | Msa1426890:intron | 30.0% | |
| AGTTATGACAGGAAAATGAA+TGG | + | tig0026083:32389-32408 | None:intergenic | 30.0% | |
| ! | TCTTAGTATATTTGCTGAGT+TGG | - | tig0026083:32530-32549 | Msa1426890:intron | 30.0% |
| AAGTAAAAGTTGACAGAAGA+AGG | - | tig0026083:32787-32806 | Msa1426890:intron | 30.0% | |
| GGAATAATCTAATCTTCGTA+TGG | + | tig0026083:32942-32961 | None:intergenic | 30.0% | |
| ATTCAAACTTAGGATTCTAG+TGG | + | tig0026083:33216-33235 | None:intergenic | 30.0% | |
| ACTAGAATCCTAAGTTTGAA+TGG | - | tig0026083:33215-33234 | Msa1426890:intron | 30.0% | |
| CTAGAATCCTAAGTTTGAAT+GGG | - | tig0026083:33216-33235 | Msa1426890:intron | 30.0% | |
| !! | GTTTGTTGCTCAAATTTTCA+GGG | + | tig0026083:33658-33677 | None:intergenic | 30.0% |
| !!! | AGTTTGTTGCTCAAATTTTC+AGG | + | tig0026083:33659-33678 | None:intergenic | 30.0% |
| GCAAAACAGATCATCAAAAT+TGG | - | tig0026083:33817-33836 | Msa1426890:intron | 30.0% | |
| ATAAACAGATATTGGTGCAA+TGG | + | tig0026083:34057-34076 | None:intergenic | 30.0% | |
| TTCATACCTGATGCTTATTA+TGG | + | tig0026083:34176-34195 | None:intergenic | 30.0% | |
| TGTGTCATATTGACAATCAT+TGG | + | tig0026083:34214-34233 | None:intergenic | 30.0% | |
| CACCCAACAACTATAAAAAT+AGG | - | tig0026083:34310-34329 | Msa1426890:intron | 30.0% | |
| !!! | CCCCTATTTTTATAGTTGTT+GGG | + | tig0026083:34315-34334 | None:intergenic | 30.0% |
| CCCAACAACTATAAAAATAG+GGG | - | tig0026083:34312-34331 | Msa1426890:intron | 30.0% | |
| CCAACAACTATAAAAATAGG+GGG | - | tig0026083:34313-34332 | Msa1426890:intron | 30.0% | |
| ATAAAAATAGGGGGAATACT+TGG | - | tig0026083:34322-34341 | Msa1426890:intron | 30.0% | |
| TAAAAATAGGGGGAATACTT+GGG | - | tig0026083:34323-34342 | Msa1426890:intron | 30.0% | |
| !! | TTCCCAATTACTTTTCACAT+AGG | - | tig0026083:34451-34470 | Msa1426890:intron | 30.0% |
| !! | TCCCAATTACTTTTCACATA+GGG | - | tig0026083:34452-34471 | Msa1426890:intron | 30.0% |
| AAAATAAAGGTCATGCTAAC+CGG | - | tig0026083:34480-34499 | Msa1426890:intron | 30.0% | |
| TATATTGCATGAAGAAAGTG+TGG | - | tig0026083:34625-34644 | Msa1426890:intron | 30.0% | |
| AAACAAAAGATTAACAGTGG+CGG | + | tig0026083:34662-34681 | None:intergenic | 30.0% | |
| AAGGATTGCTTAAGACATTA+AGG | - | tig0026083:34853-34872 | Msa1426890:intron | 30.0% | |
| AGGATTGCTTAAGACATTAA+GGG | - | tig0026083:34854-34873 | Msa1426890:intron | 30.0% | |
| ACTCAATTAAGGCTTATGAA+AGG | - | tig0026083:34889-34908 | Msa1426890:intron | 30.0% | |
| GGAAAAACCAAAAGCTATTA+GGG | - | tig0026083:35002-35021 | Msa1426890:intron | 30.0% | |
| !!! | GGTAATTTGTTTTCTAACGA+TGG | - | tig0026083:35103-35122 | Msa1426890:intron | 30.0% |
| ATTATGTAAACCCTGAAACA+AGG | + | tig0026083:35237-35256 | None:intergenic | 30.0% | |
| ATCAGGAGACAATAAAAGTA+TGG | - | tig0026083:35264-35283 | Msa1426890:intron | 30.0% | |
| AGCTTAATAACACATGGAAA+TGG | - | tig0026083:35597-35616 | Msa1426890:intron | 30.0% | |
| TGAATGGTTTGAAAGATGTT+TGG | + | tig0026083:35684-35703 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCCTTCCCTTTTTT+GGG | + | tig0026083:36101-36120 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCCTTCCCTTTTT+TGG | + | tig0026083:36102-36121 | None:intergenic | 30.0% |
| ATGGCATCAATATATACACA+TGG | + | tig0026083:36150-36169 | None:intergenic | 30.0% | |
| TATATATTGATGCCATGTGA+TGG | - | tig0026083:36154-36173 | Msa1426890:intron | 30.0% | |
| !!! | CTATTTTTATATGACATGGC+TGG | - | tig0026083:36223-36242 | Msa1426890:intron | 30.0% |
| CACAAATTTAGAAGTAGATG+TGG | - | tig0026083:36251-36270 | Msa1426890:intron | 30.0% | |
| AATTTAGAAGTAGATGTGGA+CGG | - | tig0026083:36255-36274 | Msa1426890:intron | 30.0% | |
| TACTGCTAAATGAACGATAA+AGG | + | tig0026083:36380-36399 | None:intergenic | 30.0% | |
| TTTATCGTTCATTTAGCAGT+AGG | - | tig0026083:36379-36398 | Msa1426890:intron | 30.0% | |
| ! | TACTATTAGCCTAAACCAAA+TGG | - | tig0026083:36416-36435 | Msa1426890:intron | 30.0% |
| ! | AACGAATTTCCATTTGGTTT+AGG | + | tig0026083:36428-36447 | None:intergenic | 30.0% |
| !! | GTTATAAGCAAGTTTGCTTT+TGG | - | tig0026083:36520-36539 | Msa1426890:five_prime_UTR | 30.0% |
| GTTAGTTAGTTACCTTGCTT+AGG | + | tig0026083:30573-30592 | None:intergenic | 35.0% | |
| CTATAATGACTATAGAGCTG+CGG | + | tig0026083:30936-30955 | None:intergenic | 35.0% | |
| CAAATATAAACATCCAGCCT+GGG | + | tig0026083:31181-31200 | None:intergenic | 35.0% | |
| CAGGCTGGATGTTTATATTT+GGG | - | tig0026083:31180-31199 | Msa1426890:CDS | 35.0% | |
| ! | GGATGTTTATATTTGGGACA+TGG | - | tig0026083:31186-31205 | Msa1426890:CDS | 35.0% |
| TAAGGAGTTGAGCAGTATAA+GGG | + | tig0026083:31218-31237 | None:intergenic | 35.0% | |
| GGCATATGATGATTTCAGTA+AGG | + | tig0026083:31236-31255 | None:intergenic | 35.0% | |
| CCACAACTAAAAACAATCCA+TGG | + | tig0026083:31395-31414 | None:intergenic | 35.0% | |
| !!! | CCATGGATTGTTTTTAGTTG+TGG | - | tig0026083:31392-31411 | Msa1426890:intron | 35.0% |
| TTAGTTGTGGAGAGTTAGTT+TGG | - | tig0026083:31405-31424 | Msa1426890:intron | 35.0% | |
| TTGGACAGAACATCAAGAAA+TGG | + | tig0026083:31470-31489 | None:intergenic | 35.0% | |
| GTTCTGTCCAAATATGATGA+TGG | - | tig0026083:31479-31498 | Msa1426890:CDS | 35.0% | |
| GGTTGAAGTCATAATCAGAT+AGG | + | tig0026083:31511-31530 | None:intergenic | 35.0% | |
| GACTTCAACCAAGATGAATT+AGG | - | tig0026083:31521-31540 | Msa1426890:CDS | 35.0% | |
| TATAGCCCAAAAATACTTGC+AGG | - | tig0026083:31595-31614 | Msa1426890:CDS | 35.0% | |
| ! | GTGTTACCTGCAAGTATTTT+TGG | + | tig0026083:31604-31623 | None:intergenic | 35.0% |
| !! | TAACACTTCTGGAGCATTAT+CGG | - | tig0026083:31618-31637 | Msa1426890:intron | 35.0% |
| CATTGCTAAAGTCCATAACA+TGG | - | tig0026083:31667-31686 | Msa1426890:intron | 35.0% | |
| ! | TACGCTTCATGTTTTCTTGA+TGG | - | tig0026083:31757-31776 | Msa1426890:CDS | 35.0% |
| !! | TTCATGTTTTCTTGATGGAC+TGG | - | tig0026083:31762-31781 | Msa1426890:CDS | 35.0% |
| !! | CTGGTTTGGTATATACTACA+TGG | - | tig0026083:31781-31800 | Msa1426890:CDS | 35.0% |
| ! | ACACTCCAAACACTATGTTT+TGG | + | tig0026083:32266-32285 | None:intergenic | 35.0% |
| !! | GTGTTTGGAGTGTTATTTGT+AGG | - | tig0026083:32273-32292 | Msa1426890:intron | 35.0% |
| !! | GTTTTAGGTAAAATGAAGGG+AGG | + | tig0026083:32601-32620 | None:intergenic | 35.0% |
| GTTGACAATTCATCAAGACA+TGG | - | tig0026083:32645-32664 | Msa1426890:intron | 35.0% | |
| ! | AGCTTAGGAAATTTGGTGAT+TGG | - | tig0026083:32670-32689 | Msa1426890:intron | 35.0% |
| ACAGAAGAAGGTAAGATGAA+GGG | - | tig0026083:32799-32818 | Msa1426890:intron | 35.0% | |
| ATACACTATGAGCACTTGTA+TGG | + | tig0026083:32904-32923 | None:intergenic | 35.0% | |
| ! | GAAGCACTTGTAATACACTA+TGG | + | tig0026083:32976-32995 | None:intergenic | 35.0% |
| CAAAGTTTCAAACAAGTGCT+CGG | - | tig0026083:32830-32849 | Msa1426890:intron | 35.0% | |
| CTCTTTGCTCTTAAGAATGT+GGG | + | tig0026083:33129-33148 | None:intergenic | 35.0% | |
| ACTCTTTGCTCTTAAGAATG+TGG | + | tig0026083:33130-33149 | None:intergenic | 35.0% | |
| CATTCTTAAGAGCAAAGAGT+CGG | - | tig0026083:33130-33149 | Msa1426890:intron | 35.0% | |
| ATTCTTAAGAGCAAAGAGTC+GGG | - | tig0026083:33131-33150 | Msa1426890:intron | 35.0% | |
| TTGGAATCCCATTCAAACTT+AGG | + | tig0026083:33226-33245 | None:intergenic | 35.0% | |
| !! | AATATCAAAAGGCTCTGAGT+TGG | + | tig0026083:33245-33264 | None:intergenic | 35.0% |
| !! | TTTTGAGAAGAGTTGCTCTT+TGG | - | tig0026083:33263-33282 | Msa1426890:intron | 35.0% |
| TTGTTGCACTGAAGTATGAA+CGG | + | tig0026083:33505-33524 | None:intergenic | 35.0% | |
| CATACTTCAGTGCAACAATT+CGG | - | tig0026083:33507-33526 | Msa1426890:intron | 35.0% | |
| ! | CTCTACCCAAACTTTTCATT+AGG | - | tig0026083:33629-33648 | Msa1426890:intron | 35.0% |
| GGAAGCCTAATGAAAAGTTT+GGG | + | tig0026083:33637-33656 | None:intergenic | 35.0% | |
| ! | TCGTTTTGTATAAATACCGG+AGG | - | tig0026083:33858-33877 | Msa1426890:intron | 35.0% |
| AAACGTTAGTTGTTGGGTAA+TGG | + | tig0026083:34276-34295 | None:intergenic | 35.0% | |
| !!! | CCCCCTATTTTTATAGTTGT+TGG | + | tig0026083:34316-34335 | None:intergenic | 35.0% |
| CAAAACGTGATGAAATTGCT+TGG | + | tig0026083:34430-34449 | None:intergenic | 35.0% | |
| GCCCTATGTGAAAAGTAATT+GGG | + | tig0026083:34456-34475 | None:intergenic | 35.0% | |
| AGCCCTATGTGAAAAGTAAT+TGG | + | tig0026083:34457-34476 | None:intergenic | 35.0% | |
| AAAGATGTGAGCAAAGGTTA+AGG | + | tig0026083:34599-34618 | None:intergenic | 35.0% | |
| AACAAAAGATTAACAGTGGC+GGG | + | tig0026083:34661-34680 | None:intergenic | 35.0% | |
| GGCAAACAAAAGATTAACAG+TGG | + | tig0026083:34665-34684 | None:intergenic | 35.0% | |
| AAAGTGTGTTATGCAAGCTA+AGG | + | tig0026083:34832-34851 | None:intergenic | 35.0% | |
| ! | GCTTGCATAACACACTTTTA+AGG | - | tig0026083:34834-34853 | Msa1426890:intron | 35.0% |
| ATTGCTTAAGACATTAAGGG+AGG | - | tig0026083:34857-34876 | Msa1426890:intron | 35.0% | |
| ! | GCTTGCATAACACACTTTTA+AGG | - | tig0026083:34834-34853 | Msa1426890:intron | 35.0% |
| !! | CACACTTTTAAGGATTGCTT+AGG | - | tig0026083:34844-34863 | Msa1426890:intron | 35.0% |
| !! | ACTTTTAAGGATTGCTTAGG+AGG | - | tig0026083:34980-34999 | Msa1426890:intron | 35.0% |
| !! | CTTTTAAGGATTGCTTAGGA+GGG | - | tig0026083:34981-35000 | Msa1426890:intron | 35.0% |
| GGGAAAAACCAAAAGCTATT+AGG | - | tig0026083:35001-35020 | Msa1426890:intron | 35.0% | |
| ! | TGCTAAACCCTAATAGCTTT+TGG | + | tig0026083:35012-35031 | None:intergenic | 35.0% |
| CATCTCCTATCTATAAGCAA+TGG | + | tig0026083:35084-35103 | None:intergenic | 35.0% | |
| CATTGCTTATAGATAGGAGA+TGG | - | tig0026083:35082-35101 | Msa1426890:intron | 35.0% | |
| ! | ATATTCTCTCTCCTTGTTTC+AGG | - | tig0026083:35223-35242 | Msa1426890:intron | 35.0% |
| ! | TATTCTCTCTCCTTGTTTCA+GGG | - | tig0026083:35224-35243 | Msa1426890:intron | 35.0% |
| CTGATGAATATACCGACAAA+TGG | - | tig0026083:35306-35325 | Msa1426890:intron | 35.0% | |
| TTCTGGTGAAAATAAAGACG+TGG | - | tig0026083:35446-35465 | Msa1426890:CDS | 35.0% | |
| !!! | GTGAATGTTTTAGTTACAGC+TGG | - | tig0026083:35528-35547 | Msa1426890:CDS | 35.0% |
| ! | AGCAAGCATTTTACAAGAGA+TGG | + | tig0026083:35564-35583 | None:intergenic | 35.0% |
| AAAATGCTTGCTCTTTCATC+TGG | - | tig0026083:35572-35591 | Msa1426890:CDS | 35.0% | |
| GGAAAATTCAATGTTTCCGA+TGG | - | tig0026083:35820-35839 | Msa1426890:CDS | 35.0% | |
| AAGCTGCAGAAATCATGAAA+TGG | - | tig0026083:35910-35929 | Msa1426890:CDS | 35.0% | |
| GATATACCACAGAGAAATAG+TGG | + | tig0026083:36007-36026 | None:intergenic | 35.0% | |
| TCTTCGTCATTGTCATTGTT+TGG | + | tig0026083:36029-36048 | None:intergenic | 35.0% | |
| TATACACATGGCAACACAAT+TGG | + | tig0026083:36138-36157 | None:intergenic | 35.0% | |
| TGCCACAACTTAGATGTTAA+CGG | - | tig0026083:36178-36197 | Msa1426890:intron | 35.0% | |
| ATTTAGAAGTAGATGTGGAC+GGG | - | tig0026083:36256-36275 | Msa1426890:intron | 35.0% | |
| CATCTTATATACATGAGCAG+AGG | + | tig0026083:36302-36321 | None:intergenic | 35.0% | |
| TTCATTTAGCAGTAGGAATG+TGG | - | tig0026083:36386-36405 | Msa1426890:intron | 35.0% | |
| TCATTTAGCAGTAGGAATGT+GGG | - | tig0026083:36387-36406 | Msa1426890:intron | 35.0% | |
| CAGATGAACGAATTTCCATT+TGG | + | tig0026083:36434-36453 | None:intergenic | 35.0% | |
| CTTGTGATAATAACTGTACG+AGG | + | tig0026083:36479-36498 | None:intergenic | 35.0% | |
| AGTTAGTTACCTTGCTTAGG+TGG | + | tig0026083:30570-30589 | None:intergenic | 40.0% | |
| TAACATTGTGCAATGAGTCG+TGG | - | tig0026083:31059-31078 | Msa1426890:CDS | 40.0% | |
| CCAAATATAAACATCCAGCC+TGG | + | tig0026083:31182-31201 | None:intergenic | 40.0% | |
| CCAGGCTGGATGTTTATATT+TGG | - | tig0026083:31179-31198 | Msa1426890:CDS | 40.0% | |
| GTAAGGAGTTGAGCAGTATA+AGG | + | tig0026083:31219-31238 | None:intergenic | 40.0% | |
| ACTGAAATCATCATATGCCG+AGG | - | tig0026083:31237-31256 | Msa1426890:intron | 40.0% | |
| !! | GTCCAAATATGATGATGGGA+AGG | - | tig0026083:31484-31503 | Msa1426890:CDS | 40.0% |
| GTCCTTCCCATCATCATATT+TGG | + | tig0026083:31489-31508 | None:intergenic | 40.0% | |
| ! | CTTTTGTTGGCATCATCATG+TGG | + | tig0026083:31551-31570 | None:intergenic | 40.0% |
| ATACTTGCAGGTAACACTTC+TGG | - | tig0026083:31607-31626 | Msa1426890:CDS | 40.0% | |
| !!! | GTTTTCTTGATGGACTGGTT+TGG | - | tig0026083:31767-31786 | Msa1426890:CDS | 40.0% |
| ATTTAGATAGCTGCGAACCT+AGG | - | tig0026083:32306-32325 | Msa1426890:intron | 40.0% | |
| TTTAGATAGCTGCGAACCTA+GGG | - | tig0026083:32307-32326 | Msa1426890:intron | 40.0% | |
| TGAGTTGCAAAACTTGCAAG+TGG | - | tig0026083:32359-32378 | Msa1426890:intron | 40.0% | |
| CATGGCAAGCTTAGGAAATT+TGG | - | tig0026083:32663-32682 | Msa1426890:intron | 40.0% | |
| GACAGAAGAAGGTAAGATGA+AGG | - | tig0026083:32798-32817 | Msa1426890:intron | 40.0% | |
| TACACTATGGCTCAGAGTTA+TGG | + | tig0026083:32963-32982 | None:intergenic | 40.0% | |
| TTAACTGTTCAACCTGAGAG+CGG | + | tig0026083:33068-33087 | None:intergenic | 40.0% | |
| !! | CTCTCAGGTTGAACAGTTAA+GGG | - | tig0026083:33068-33087 | Msa1426890:intron | 40.0% |
| GAAGGGTTATTGTCTATCGT+TGG | - | tig0026083:33321-33340 | Msa1426890:intron | 40.0% | |
| TGTAGTGCATTATGAGTCTC+AGG | + | tig0026083:33371-33390 | None:intergenic | 40.0% | |
| TGAAAAGTTTGGGTAGAGCA+CGG | + | tig0026083:33627-33646 | None:intergenic | 40.0% | |
| GGGAAGCCTAATGAAAAGTT+TGG | + | tig0026083:33638-33657 | None:intergenic | 40.0% | |
| ! | TCATAAAAGGTACATGTGCG+AGG | + | tig0026083:33947-33966 | None:intergenic | 40.0% |
| TGATGCAAAGATGTGAGCAA+AGG | + | tig0026083:34605-34624 | None:intergenic | 40.0% | |
| ACAAAAGATTAACAGTGGCG+GGG | + | tig0026083:34660-34679 | None:intergenic | 40.0% | |
| ! | GAGTCGTGAAACAATTTTGC+AGG | + | tig0026083:34686-34705 | None:intergenic | 40.0% |
| AAGACATTAAGGGAGGTAGT+TGG | - | tig0026083:34864-34883 | Msa1426890:intron | 40.0% | |
| GGTAGTTGGCAACTCAATTA+AGG | - | tig0026083:34878-34897 | Msa1426890:intron | 40.0% | |
| ACCAGCCATTGCTTATAGAT+AGG | - | tig0026083:35076-35095 | Msa1426890:intron | 40.0% | |
| TCCTATCTATAAGCAATGGC+TGG | + | tig0026083:35080-35099 | None:intergenic | 40.0% | |
| ACCTGATGAAAGCCATTTGT+CGG | + | tig0026083:35321-35340 | None:intergenic | 40.0% | |
| CTGGACAGCTTAATAACACA+TGG | - | tig0026083:35591-35610 | Msa1426890:intron | 40.0% | |
| TCATTTCAGTGTATAGCTCC+TGG | - | tig0026083:35790-35809 | Msa1426890:CDS | 40.0% | |
| CATTTCAGTGTATAGCTCCT+GGG | - | tig0026083:35791-35810 | Msa1426890:CDS | 40.0% | |
| TCAATGTTTCCGATGGATCA+AGG | - | tig0026083:35827-35846 | Msa1426890:CDS | 40.0% | |
| ATCACACAAAAGCGAACGTT+GGG | + | tig0026083:35867-35886 | None:intergenic | 40.0% | |
| AATCACACAAAAGCGAACGT+TGG | + | tig0026083:35868-35887 | None:intergenic | 40.0% | |
| !! | AACGTTCGCTTTTGTGTGAT+TGG | - | tig0026083:35867-35886 | Msa1426890:CDS | 40.0% |
| TTTGTGTGATTGGAGATGGA+TGG | - | tig0026083:35877-35896 | Msa1426890:CDS | 40.0% | |
| TTGTGTGATTGGAGATGGAT+GGG | - | tig0026083:35878-35897 | Msa1426890:CDS | 40.0% | |
| !! | CGCGGGTCAATTTTAACAAA+CGG | + | tig0026083:35936-35955 | None:intergenic | 40.0% |
| ! | GAAATAGTGGCCAACTGTTT+TGG | + | tig0026083:35994-36013 | None:intergenic | 40.0% |
| GGGAAAAAAAAACAGCAGCA+TGG | - | tig0026083:36112-36131 | Msa1426890:intron | 40.0% | |
| GCCACAACTTAGATGTTAAC+GGG | - | tig0026083:36179-36198 | Msa1426890:intron | 40.0% | |
| ACCCGTTAACATCTAAGTTG+TGG | + | tig0026083:36183-36202 | None:intergenic | 40.0% | |
| AAAGGTGAGATATGATGAGC+TGG | + | tig0026083:36362-36381 | None:intergenic | 40.0% | |
| AAATTCGTTCATCTGCAGTC+TGG | - | tig0026083:36439-36458 | Msa1426890:intron | 40.0% | |
| TGCGATGTGTTTGACAACAC+CGG | - | tig0026083:30995-31014 | Msa1426890:exon | 45.0% | |
| ! | AGTCGTGGTGTTTTTCTGCA+GGG | - | tig0026083:31074-31093 | Msa1426890:CDS | 45.0% |
| TATAAACATCCAGCCTGGGA+TGG | + | tig0026083:31177-31196 | None:intergenic | 45.0% | |
| TCATATGCCGAGGCTTTCAA+CGG | - | tig0026083:31247-31266 | Msa1426890:intron | 45.0% | |
| TTTCAGACCGTTGAAAGCCT+CGG | + | tig0026083:31257-31276 | None:intergenic | 45.0% | |
| GGTCTGAAAGATGTGCAGAA+AGG | - | tig0026083:31268-31287 | Msa1426890:intron | 45.0% | |
| !! | TGGAGAGTTAGTTTGGTGTC+CGG | - | tig0026083:31412-31431 | Msa1426890:intron | 45.0% |
| TGTTGGCATCATCATGTGGA+GGG | + | tig0026083:31547-31566 | None:intergenic | 45.0% | |
| TTGTTGGCATCATCATGTGG+AGG | + | tig0026083:31548-31567 | None:intergenic | 45.0% | |
| CACAGCAAAATACCATCCCT+AGG | + | tig0026083:32326-32345 | None:intergenic | 45.0% | |
| CATCAAGACATGGCAAGCTT+AGG | - | tig0026083:32655-32674 | Msa1426890:intron | 45.0% | |
| GAAGAAGGTAAGATGAAGGG+AGG | - | tig0026083:32802-32821 | Msa1426890:intron | 45.0% | |
| CACATTAGTTATCCGCTCTC+AGG | - | tig0026083:33053-33072 | Msa1426890:intron | 45.0% | |
| !! | GCTCTCAGGTTGAACAGTTA+AGG | - | tig0026083:33067-33086 | Msa1426890:intron | 45.0% |
| ! | CAGGTTGAACAGTTAAGGGT+CGG | - | tig0026083:33072-33091 | Msa1426890:intron | 45.0% |
| AAAGAGAAGCTCTTCGTTCC+CGG | - | tig0026083:33164-33183 | Msa1426890:intron | 45.0% | |
| TAGGATTCTAGTGGTTCCGT+AGG | + | tig0026083:33207-33226 | None:intergenic | 45.0% | |
| AAGTTGTAAGCTGTGCTCGA+AGG | - | tig0026083:33303-33322 | Msa1426890:intron | 45.0% | |
| AGTTGTAAGCTGTGCTCGAA+GGG | - | tig0026083:33304-33323 | Msa1426890:intron | 45.0% | |
| ! | TTGTCTATCGTTGGCCTCTA+TGG | - | tig0026083:33330-33349 | Msa1426890:intron | 45.0% |
| CCTCTATGGTAGAACCAGTT+GGG | - | tig0026083:33344-33363 | Msa1426890:intron | 45.0% | |
| CTCTATGGTAGAACCAGTTG+GGG | - | tig0026083:33345-33364 | Msa1426890:intron | 45.0% | |
| GAAAAGTTTGGGTAGAGCAC+GGG | + | tig0026083:33626-33645 | None:intergenic | 45.0% | |
| TCTACAAAACCAGCCCCATT+TGG | + | tig0026083:34375-34394 | None:intergenic | 45.0% | |
| TAATGTTAACCAGTGCCCCT+GGG | + | tig0026083:34524-34543 | None:intergenic | 45.0% | |
| ACCGACAAATGGCTTTCATC+AGG | - | tig0026083:35317-35336 | Msa1426890:intron | 45.0% | |
| ! | TTGAATTTTCCCCACTTCCC+AGG | + | tig0026083:35811-35830 | None:intergenic | 45.0% |
| TGAAACGCTCCTTGATCCAT+CGG | + | tig0026083:35839-35858 | None:intergenic | 45.0% | |
| ! | CGCTTTTGTGTGATTGGAGA+TGG | - | tig0026083:35873-35892 | Msa1426890:CDS | 45.0% |
| ! | TATGAGATTTTCCTGGTCGC+GGG | + | tig0026083:35953-35972 | None:intergenic | 45.0% |
| ! | CTATGAGATTTTCCTGGTCG+CGG | + | tig0026083:35954-35973 | None:intergenic | 45.0% |
| ! | GGGAACCTATGAGATTTTCC+TGG | + | tig0026083:35960-35979 | None:intergenic | 45.0% |
| GGAAAATCTCATAGGTTCCC+TGG | - | tig0026083:35960-35979 | Msa1426890:intron | 45.0% | |
| ! | AGTTGGCCACTATTTCTCTG+TGG | - | tig0026083:35998-36017 | Msa1426890:intron | 45.0% |
| ACAGACAGGATCACGGAAAA+GGG | + | tig0026083:36076-36095 | None:intergenic | 45.0% | |
| AACAGACAGGATCACGGAAA+AGG | + | tig0026083:36077-36096 | None:intergenic | 45.0% | |
| TCCTGTCTGTTGCCCAAAAA+AGG | - | tig0026083:36086-36105 | Msa1426890:intron | 45.0% | |
| CCTGTCTGTTGCCCAAAAAA+GGG | - | tig0026083:36087-36106 | Msa1426890:intron | 45.0% | |
| TCTGTTGCCCAAAAAAGGGA+AGG | - | tig0026083:36091-36110 | Msa1426890:intron | 45.0% | |
| CTGTTGCCCAAAAAAGGGAA+GGG | - | tig0026083:36092-36111 | Msa1426890:intron | 45.0% | |
| ATGAGCTGGTGACCAAGATA+AGG | + | tig0026083:36348-36367 | None:intergenic | 45.0% | |
| !! | TGATAAAATAAATATTTAAA+TGG | - | tig0026083:32743-32762 | Msa1426890:intron | 5.0% |
| !!! | AATAAATATTTAAGTTTTAA+AGG | + | tig0026083:32878-32897 | None:intergenic | 5.0% |
| TCTCTGCAACCACCTAAGCA+AGG | - | tig0026083:30558-30577 | Msa1426890:three_prime_UTR | 50.0% | |
| ! | GAGTCGTGGTGTTTTTCTGC+AGG | - | tig0026083:31073-31092 | Msa1426890:CDS | 50.0% |
| ! | TTTTTCTGCAGGGCACAGCT+AGG | - | tig0026083:31084-31103 | Msa1426890:CDS | 50.0% |
| GCACAGCTAGGTTAGTGGAA+TGG | - | tig0026083:31096-31115 | Msa1426890:CDS | 50.0% | |
| CAGCTAGGTTAGTGGAATGG+CGG | - | tig0026083:31099-31118 | Msa1426890:CDS | 50.0% | |
| !! | TGCAGAAAGGTGTCGAGCTT+GGG | - | tig0026083:31281-31300 | Msa1426890:intron | 50.0% |
| GTGGAGGGCCTAATTCATCT+TGG | + | tig0026083:31532-31551 | None:intergenic | 50.0% | |
| CTTAAGAGCAAAGAGTCGGG+CGG | - | tig0026083:33134-33153 | Msa1426890:intron | 50.0% | |
| TCTCCTGTAGCTGGATCCTA+CGG | - | tig0026083:33188-33207 | Msa1426890:intron | 50.0% | |
| GCCTCTATGGTAGAACCAGT+TGG | - | tig0026083:33343-33362 | Msa1426890:intron | 50.0% | |
| !! | CCCAACTGGTTCTACCATAG+AGG | + | tig0026083:33347-33366 | None:intergenic | 50.0% |
| AACTCCTGCCACTGCCAAAT+GGG | - | tig0026083:34358-34377 | Msa1426890:intron | 50.0% | |
| GTAATGTTAACCAGTGCCCC+TGG | + | tig0026083:34525-34544 | None:intergenic | 50.0% | |
| ACCAGAACACTCCGTCAAAC+AGG | + | tig0026083:35433-35452 | None:intergenic | 50.0% | |
| AGTGTATAGCTCCTGGGAAG+TGG | - | tig0026083:35797-35816 | Msa1426890:CDS | 50.0% | |
| GTGTATAGCTCCTGGGAAGT+GGG | - | tig0026083:35798-35817 | Msa1426890:CDS | 50.0% | |
| TGTATAGCTCCTGGGAAGTG+GGG | - | tig0026083:35799-35818 | Msa1426890:CDS | 50.0% | |
| CACAAAAGCGAACGTTGGGA+TGG | + | tig0026083:35863-35882 | None:intergenic | 50.0% | |
| GTTAAAATTGACCCGCGACC+AGG | - | tig0026083:35939-35958 | Msa1426890:intron | 50.0% | |
| CGCGACCAGGAAAATCTCAT+AGG | - | tig0026083:35952-35971 | Msa1426890:intron | 50.0% | |
| !! | CTGTTTTGGATGTGAGGCCA+GGG | + | tig0026083:35980-35999 | None:intergenic | 50.0% |
| !! | ACTGTTTTGGATGTGAGGCC+AGG | + | tig0026083:35981-36000 | None:intergenic | 50.0% |
| GGCCTCACATCCAAAACAGT+TGG | - | tig0026083:35981-36000 | Msa1426890:intron | 50.0% | |
| !! | GGCCAACTGTTTTGGATGTG+AGG | + | tig0026083:35986-36005 | None:intergenic | 50.0% |
| TTGGGCAACAGACAGGATCA+CGG | + | tig0026083:36083-36102 | None:intergenic | 50.0% | |
| !!! | CCCTTTTTTGGGCAACAGAC+AGG | + | tig0026083:36090-36109 | None:intergenic | 50.0% |
| AAGTTGTGGCAGCCATCACA+TGG | + | tig0026083:36169-36188 | None:intergenic | 50.0% | |
| AGTGGAATGGCGGTTGCATC+TGG | - | tig0026083:31109-31128 | Msa1426890:CDS | 55.0% | |
| GTGGAATGGCGGTTGCATCT+GGG | - | tig0026083:31110-31129 | Msa1426890:CDS | 55.0% | |
| GGATGAGGGCGGATGAAACA+CGG | - | tig0026083:31131-31150 | Msa1426890:CDS | 55.0% | |
| GATGAGGGCGGATGAAACAC+GGG | - | tig0026083:31132-31151 | Msa1426890:CDS | 55.0% | |
| CCTGGGATGGATGTTGTCAC+TGG | + | tig0026083:31164-31183 | None:intergenic | 55.0% | |
| CCAGTGACAACATCCATCCC+AGG | - | tig0026083:31161-31180 | Msa1426890:CDS | 55.0% | |
| TGACAACATCCATCCCAGGC+TGG | - | tig0026083:31165-31184 | Msa1426890:CDS | 55.0% | |
| !! | GTGCAGAAAGGTGTCGAGCT+TGG | - | tig0026083:31280-31299 | Msa1426890:intron | 55.0% |
| TGTCGAGCTTGGGAAGACGT+GGG | - | tig0026083:31291-31310 | Msa1426890:intron | 55.0% | |
| GATAGCTGCGAACCTAGGGA+TGG | - | tig0026083:32311-32330 | Msa1426890:intron | 55.0% | |
| GATCCAGCTACAGGAGAACC+GGG | + | tig0026083:33185-33204 | None:intergenic | 55.0% | |
| GGATCCAGCTACAGGAGAAC+CGG | + | tig0026083:33186-33205 | None:intergenic | 55.0% | |
| GTTCCGTAGGATCCAGCTAC+AGG | + | tig0026083:33194-33213 | None:intergenic | 55.0% | |
| TATGAGTCTCAGGCCCCAAC+TGG | + | tig0026083:33361-33380 | None:intergenic | 55.0% | |
| GAACTCCTGCCACTGCCAAA+TGG | - | tig0026083:34357-34376 | Msa1426890:intron | 55.0% | |
| ACTCCTGCCACTGCCAAATG+GGG | - | tig0026083:34359-34378 | Msa1426890:intron | 55.0% | |
| AAACCAGCCCCATTTGGCAG+TGG | + | tig0026083:34369-34388 | None:intergenic | 55.0% | |
| ! | GACACTGGTTAAGGGGACAC+CGG | + | tig0026083:34502-34521 | None:intergenic | 55.0% |
| TCCCCTTAACCAGTGTCCCA+GGG | - | tig0026083:34505-34524 | Msa1426890:intron | 55.0% | |
| TTCAGCACGGGCCTGTTTGA+CGG | - | tig0026083:35419-35438 | Msa1426890:intron | 55.0% | |
| ! | GCCTGTTTGACGGAGTGTTC+TGG | - | tig0026083:35429-35448 | Msa1426890:intron | 55.0% |
| GCAGGGCACAGCTAGGTTAG+TGG | - | tig0026083:31091-31110 | Msa1426890:CDS | 60.0% | |
| ! | TGGCGGTTGCATCTGGGATG+AGG | - | tig0026083:31116-31135 | Msa1426890:CDS | 60.0% |
| ! | GGCGGTTGCATCTGGGATGA+GGG | - | tig0026083:31117-31136 | Msa1426890:CDS | 60.0% |
| ! | GGTTGCATCTGGGATGAGGG+CGG | - | tig0026083:31120-31139 | Msa1426890:CDS | 60.0% |
| GTGTCGAGCTTGGGAAGACG+TGG | - | tig0026083:31290-31309 | Msa1426890:intron | 60.0% | |
| GTTCCCGGTTCTCCTGTAGC+TGG | - | tig0026083:33179-33198 | Msa1426890:intron | 60.0% | |
| GTCCCCTTAACCAGTGTCCC+AGG | - | tig0026083:34504-34523 | Msa1426890:intron | 60.0% | |
| ! | CCCCTGGGACACTGGTTAAG+GGG | + | tig0026083:34509-34528 | None:intergenic | 60.0% |
| CCCCTTAACCAGTGTCCCAG+GGG | - | tig0026083:34506-34525 | Msa1426890:intron | 60.0% | |
| ! | GCCCCTGGGACACTGGTTAA+GGG | + | tig0026083:34510-34529 | None:intergenic | 60.0% |
| ! | TGCCCCTGGGACACTGGTTA+AGG | + | tig0026083:34511-34530 | None:intergenic | 60.0% |
| CAGCCCCATTTGGCAGTGGC+AGG | + | tig0026083:34365-34384 | None:intergenic | 65.0% | |
| CTGCCACTGCCAAATGGGGC+TGG | - | tig0026083:34363-34382 | Msa1426890:intron | 65.0% | |
| ! | AACCAGTGTCCCAGGGGCAC+TGG | - | tig0026083:34512-34531 | Msa1426890:intron | 65.0% |
| AACCAGTGCCCCTGGGACAC+TGG | + | tig0026083:34517-34536 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026083 | gene | 30509 | 36543 | 30509 | ID=Msa1426890;Name=Msa1426890 |
| tig0026083 | mRNA | 30509 | 36543 | 30509 | ID=Msa1426890-mRNA-1;Parent=Msa1426890;Name=Msa1426890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=91|1|1|1|0.5|0.42|7|435|318 |
| tig0026083 | exon | 30509 | 30595 | 30509 | ID=Msa1426890-mRNA-1:exon:5173;Parent=Msa1426890-mRNA-1 |
| tig0026083 | exon | 30652 | 31253 | 30652 | ID=Msa1426890-mRNA-1:exon:5172;Parent=Msa1426890-mRNA-1 |
| tig0026083 | exon | 31434 | 31628 | 31434 | ID=Msa1426890-mRNA-1:exon:5171;Parent=Msa1426890-mRNA-1 |
| tig0026083 | exon | 31714 | 31807 | 31714 | ID=Msa1426890-mRNA-1:exon:5170;Parent=Msa1426890-mRNA-1 |
| tig0026083 | exon | 35436 | 35603 | 35436 | ID=Msa1426890-mRNA-1:exon:5169;Parent=Msa1426890-mRNA-1 |
| tig0026083 | exon | 35692 | 35957 | 35692 | ID=Msa1426890-mRNA-1:exon:5168;Parent=Msa1426890-mRNA-1 |
| tig0026083 | exon | 36473 | 36543 | 36473 | ID=Msa1426890-mRNA-1:exon:5167;Parent=Msa1426890-mRNA-1 |
| tig0026083 | five_prime_UTR | 36473 | 36543 | 36473 | ID=Msa1426890-mRNA-1:five_prime_utr;Parent=Msa1426890-mRNA-1 |
| tig0026083 | five_prime_UTR | 35938 | 35957 | 35938 | ID=Msa1426890-mRNA-1:five_prime_utr;Parent=Msa1426890-mRNA-1 |
| tig0026083 | CDS | 35692 | 35937 | 35692 | ID=Msa1426890-mRNA-1:cds;Parent=Msa1426890-mRNA-1 |
| tig0026083 | CDS | 35436 | 35603 | 35436 | ID=Msa1426890-mRNA-1:cds;Parent=Msa1426890-mRNA-1 |
| tig0026083 | CDS | 31714 | 31807 | 31714 | ID=Msa1426890-mRNA-1:cds;Parent=Msa1426890-mRNA-1 |
| tig0026083 | CDS | 31434 | 31628 | 31434 | ID=Msa1426890-mRNA-1:cds;Parent=Msa1426890-mRNA-1 |
| tig0026083 | CDS | 31000 | 31253 | 31000 | ID=Msa1426890-mRNA-1:cds;Parent=Msa1426890-mRNA-1 |
| tig0026083 | three_prime_UTR | 30652 | 30999 | 30652 | ID=Msa1426890-mRNA-1:three_prime_utr;Parent=Msa1426890-mRNA-1 |
| tig0026083 | three_prime_UTR | 30509 | 30595 | 30509 | ID=Msa1426890-mRNA-1:three_prime_utr;Parent=Msa1426890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
