AlfalfaGEDB | Msa0312160

M. sativa cultivar zhongmu-4 / Msa0312160

KEGG: -
GO: -
PFAM: PF06101.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312160	ABN08111.1	83.796	216	7	2	1	188	345	560	2.51e-122	367

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312160	sp\|Q501D1\|Y1490_ARATH	39.908	218	91	3	3	187	360	570	6.78e-48	167

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0312160	0.810162	1.322267e-50	-8.615850e-47
Msa0079080	Msa0312160	0.801949	7.072946e-49	-8.615850e-47
Msa0110970	Msa0312160	0.803553	3.299497e-49	-8.615850e-47
Msa0157290	Msa0312160	0.810776	9.743228e-51	-8.615850e-47
Msa0243100	Msa0312160	0.803991	2.676963e-49	-8.615850e-47
Msa0312160	Msa0376350	0.800365	1.491202e-48	-8.615850e-47
Msa0312160	Msa0424790	0.803170	3.961365e-49	-8.615850e-47
Msa0312160	Msa0565730	0.805713	1.168781e-49	-8.615850e-47
Msa0312160	Msa0662500	0.802813	4.695436e-49	-8.615850e-47
Msa0312160	Msa0861870	0.801759	7.738840e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312160	MtrunA17_Chr2g0309171	83.962	212	6	2	1	184	319	530	9.78e-118	359
Msa0312160	MtrunA17_Chr2g0309171	69.907	216	37	2	1	188	937	1152	8.14e-101	314
Msa0312160	MtrunA17_Chr2g0309181	71.296	216	30	3	1	188	375	586	1.01e-103	310
Msa0312160	MtrunA17_Chr2g0309191	62.500	216	44	3	1	188	347	553	6.93e-88	268
Msa0312160	MtrunA17_Chr4g0074491	60.648	216	57	2	1	188	332	547	9.99e-85	259
Msa0312160	MtrunA17_Chr2g0310081	47.706	218	66	5	1	188	380	579	1.65e-60	197
Msa0312160	MtrunA17_Chr5g0395701	45.161	217	80	3	2	187	397	605	5.91e-57	188
Msa0312160	MtrunA17_Chr1g0190341	46.083	217	77	4	3	187	350	558	1.59e-56	186
Msa0312160	MtrunA17_Chr1g0190371	46.083	217	77	4	3	187	350	558	1.59e-56	186
Msa0312160	MtrunA17_Chr4g0039581	43.519	216	83	3	3	187	360	567	5.66e-51	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0312160	AT2G44260.1	46.296	216	81	4	1	187	343	552	2.22e-59	194
Msa0312160	AT2G44260.2	46.296	216	81	4	1	187	373	582	4.28e-59	194
Msa0312160	AT2G44230.1	46.330	218	80	4	1	188	332	542	1.81e-58	192
Msa0312160	AT3G04350.2	42.202	218	86	4	3	188	335	544	1.08e-53	179
Msa0312160	AT3G01870.1	44.131	213	85	5	1	187	379	583	1.27e-53	179
Msa0312160	AT3G04350.1	42.202	218	86	4	3	188	357	566	2.15e-53	179
Msa0312160	AT3G01880.1	44.131	213	86	5	1	187	384	589	1.19e-52	177
Msa0312160	AT5G18490.1	42.202	218	84	5	3	188	345	552	2.23e-51	173
Msa0312160	AT5G43950.1	40.553	217	91	3	2	187	355	564	2.37e-50	171
Msa0312160	AT1G04090.1	39.908	218	91	3	3	187	360	570	6.90e-49	167

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Find 48 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCTCTTAACTTCCC+AGG	0.534968	2_4:+7204222	None:intergenic
AACTCTACTTTAGCTCTTCC+AGG	0.339774	2_4:+7204697	None:intergenic
AAGGAAAAGGGTAATTGGAA+TGG	0.567477	2_4:-7204150	Msa0312160:CDS
AATGTGGCTAAGGCGTTGCC+TGG	0.415179	2_4:-7204240	Msa0312160:CDS
ACCAAAAGAAGCCTTGGGAG+AGG	0.462759	2_4:-7204178	Msa0312160:CDS
AGATATTGAATTGCAGAATG+TGG	0.619484	2_4:-7204256	Msa0312160:CDS
AGCCTTGGGAGAGGGTCCAA+AGG	0.628021	2_4:-7204169	Msa0312160:CDS
AGGTGAACATGTTGGTGATT+GGG	0.508342	2_4:-7204650	Msa0312160:CDS
AGTAGATTAAGGCCAGCATG+TGG	0.670839	2_4:+7204445	None:intergenic
AGTTTACCAAAAGAAGCCTT+GGG	0.519013	2_4:-7204183	Msa0312160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCACTGATATTGCTATGT+GGG	-	chr2_4:7204151-7204170	Msa0312160:CDS	30.0%
ATTGTTTATGCTTCTTTGCA+TGG	-	chr2_4:7204410-7204429	Msa0312160:intron	30.0%
AGGTAGAAATGTTATGGATA+TGG	-	chr2_4:7204509-7204528	Msa0312160:CDS	30.0%
GGTAGAAATGTTATGGATAT+GGG	-	chr2_4:7204510-7204529	Msa0312160:CDS	30.0%
GGATATGGGAAAATATGTAT+TGG	-	chr2_4:7204524-7204543	Msa0312160:CDS	30.0%
TTGGTTTCTGCAGAATATTT+AGG	-	chr2_4:7204543-7204562	Msa0312160:CDS	30.0%
TGGTTTCTGCAGAATATTTA+GGG	-	chr2_4:7204544-7204563	Msa0312160:CDS	30.0%
CTAAAATAATTCAACCATGC+TGG	+	chr2_4:7204585-7204604	None:intergenic	30.0%
TCTAGATCAAAGTCAATATG+TGG	+	chr2_4:7204618-7204637	None:intergenic	30.0%
AGATATTGAATTGCAGAATG+TGG	-	chr2_4:7204635-7204654	Msa0312160:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	7204137	7204776	7204137	ID=Msa0312160;Name=Msa0312160
chr2_4	mRNA	7204137	7204776	7204137	ID=Msa0312160-mRNA-1;Parent=Msa0312160;Name=Msa0312160-mRNA-1;_AED=0.44;_eAED=1.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|188
chr2_4	exon	7204431	7204776	7204431	ID=Msa0312160-mRNA-1:exon:2801;Parent=Msa0312160-mRNA-1
chr2_4	exon	7204137	7204357	7204137	ID=Msa0312160-mRNA-1:exon:2800;Parent=Msa0312160-mRNA-1
chr2_4	CDS	7204431	7204776	7204431	ID=Msa0312160-mRNA-1:cds;Parent=Msa0312160-mRNA-1
chr2_4	CDS	7204137	7204357	7204137	ID=Msa0312160-mRNA-1:cds;Parent=Msa0312160-mRNA-1

Gene Sequence

>Msa0312160

ATGTATGGAGGAACATTCACTGATATTGCTATGTGGGTTTTTTATCCTTTCAATGGACCTGGAAGAGCTAAAGTAGAGTTTATAGATATTAAATTAGGAAAAGCAGGTGAACATGTTGGTGATTGGGAGCATGTGACATTAAGGGTAAGTAACTTCGATGGTCAATTATGGCATATCTACTTCTCTCAACACAATGCTGGTAAATGGATTGATTCATCTCAACTTGAGTTCCAAAGTGATGCTAGTAGTTTTGATTTTCCAACAAAAAGACCTATTGTTTATGCTTCTTTGCATGGCCATGCATCATATCCACATGCTGGCCTTAATCTACTAGGGAAAAATGTGAAATATTTAGGGTCTGAAGTTAAAGAGCCAGCATGGTTGAATTATTTTAGGGAGTGGGGTCCACATATTGACTTTGATCTAGATATTGAATTGCAGAATGTGGCTAAGGCGTTGCCTGGGAAGTTAAGAGATGGTTTTGAAAGTATTATTAGGAGTTTACCAAAAGAAGCCTTGGGAGAGGGTCCAAAGGAAAAGGGTAATTGGAATGGTGATGAAGTTTGA

Protein sequence

>Msa0312160

MYGGTFTDIAMWVFYPFNGPGRAKVEFIDIKLGKAGEHVGDWEHVTLRVSNFDGQLWHIYFSQHNAGKWIDSSQLEFQSDASSFDFPTKRPIVYASLHGHASYPHAGLNLLGKNVKYLGSEVKEPAWLNYFREWGPHIDFDLDIELQNVAKALPGKLRDGFESIIRSLPKEALGEGPKEKGNWNGDEV*