AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0947660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947660 MtrunA17_Chr2g0280431 42.202 109 48 3 121 220 307 409 8.39e-14 69.7
Msa0947660 MtrunA17_Chr8g0388461 47.297 74 36 1 29 102 91 161 1.62e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947660 AT4G10920.2 47.436 78 38 1 29 106 87 161 9.68e-17 75.1
Msa0947660 AT4G10920.1 47.436 78 38 1 29 106 87 161 9.68e-17 75.1

Find 69 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGAAATTGATGTGATTT+TGG 0.193141 6_3:+30716290 Msa0947660:CDS
ATCTATATTTGCCTCTTTCT+TGG 0.229552 6_3:-30716169 None:intergenic
AACATATACATTGTTTGTTT+TGG 0.270889 6_3:+30716551 Msa0947660:three_prime_UTR
TTTGAATTGTAACTTTCTTT+TGG 0.278276 6_3:-30715214 None:intergenic
GATTTGAAAACGAAAGAAAT+AGG 0.298954 6_3:+30716189 Msa0947660:CDS
GGATCAGTGGTCCATCTTAA+AGG 0.299308 6_3:+30716059 Msa0947660:CDS
AGAAGAAGCATATATAAAAC+TGG 0.300076 6_3:+30716098 Msa0947660:CDS
CAAGAAAGAATATGCTAAAA+TGG 0.320277 6_3:+30716224 Msa0947660:CDS
CCTTGCTAATGTTAATTTGC+TGG 0.350058 6_3:+30714823 Msa0947660:five_prime_UTR
TAAGCACCGACTTGAAGATT+TGG 0.358369 6_3:+30716626 Msa0947660:three_prime_UTR
ATGTTTAGCAAGAGAATATA+TGG 0.366029 6_3:-30716533 None:intergenic
GGGACCCTCCCAGTTCTGAC+TGG 0.366748 6_3:-30716128 None:intergenic
AGACAAAATTTGTCTCCATT+AGG 0.391141 6_3:+30715255 Msa0947660:CDS
GGGAGGGTCCCAGTCAGAAC+TGG 0.394937 6_3:+30716119 Msa0947660:CDS
TTCGGAGAAGACTGGATTGC+AGG 0.395516 6_3:+30716443 Msa0947660:CDS
ATACTTTGCAGATGAATAGA+TGG 0.400434 6_3:-30714980 None:intergenic
GGATCGTAGACAGCTGATTT+CGG 0.401576 6_3:+30716425 Msa0947660:CDS
AAATAAATAGAATCTCATTA+AGG 0.402118 6_3:-30714785 None:intergenic
CATTGGAGGAGAGGTGGAAT+AGG 0.405658 6_3:+30716376 Msa0947660:CDS
TAACCTTCTTCTCGGCAATC+TGG 0.406973 6_3:-30716401 None:intergenic
AGACTGGATTGCAGGCATTT+CGG 0.409767 6_3:+30716451 Msa0947660:CDS
TGGCACGCTTTGTTTCTGAC+TGG 0.413267 6_3:-30716149 None:intergenic
TAATATGGTACCAGTACGTT+TGG 0.418907 6_3:+30716580 Msa0947660:three_prime_UTR
TGAACATGGACGACGTGAAA+AGG 0.420395 6_3:+30716319 Msa0947660:CDS
GGCACGCTTTGTTTCTGACT+GGG 0.423241 6_3:-30716148 None:intergenic
TACCAGTACGTTTGGATATG+TGG 0.441753 6_3:+30716588 Msa0947660:three_prime_UTR
ACGATCCATAACCTTCTTCT+CGG 0.447059 6_3:-30716409 None:intergenic
ATATATGCTTCTTCTATGGC+AGG 0.452325 6_3:-30716090 None:intergenic
TGGTGAGCTTGTAGCAGAAA+TGG 0.453570 6_3:+30714899 Msa0947660:CDS
ATCTGAGAGGATTGCATTGG+AGG 0.457412 6_3:+30716362 Msa0947660:CDS
GATTGCCGAGAAGAAGGTTA+TGG 0.458622 6_3:+30716404 Msa0947660:CDS
TCGTCAGGCACAAGAGGAAC+TGG 0.467093 6_3:+30714879 Msa0947660:CDS
GAAAAGGGGATTGGAATTGA+TGG 0.468138 6_3:+30716335 Msa0947660:CDS
AAAACGAAAGAAATAGGTTG+TGG 0.469430 6_3:+30716195 Msa0947660:CDS
GAACATGGACGACGTGAAAA+GGG 0.481916 6_3:+30716320 Msa0947660:CDS
CAGCTGATTTCGGAGAAGAC+TGG 0.483314 6_3:+30716435 Msa0947660:CDS
AGAAATGGATGATGCTCAAA+TGG 0.487326 6_3:+30714914 Msa0947660:CDS
AGGCATATTTGCCTTTAAGA+TGG 0.494076 6_3:-30716070 None:intergenic
GTTCCAGATTGCCGAGAAGA+AGG 0.495198 6_3:+30716398 Msa0947660:CDS
TATTAGACAATGTCTTCGTC+AGG 0.500087 6_3:+30714864 Msa0947660:exon
CAAAGAAAACAAGCAACAAA+AGG 0.501200 6_3:-30716689 None:intergenic
AACAAAGCGTGCCAAGAAAG+AGG 0.509036 6_3:+30716158 Msa0947660:CDS
GGATTGCATTGGAGGAGAGG+TGG 0.517797 6_3:+30716370 Msa0947660:CDS
GGACGACGTGAAAAGGGGAT+TGG 0.526254 6_3:+30716326 Msa0947660:CDS
GGACCCTCCCAGTTCTGACT+GGG 0.529301 6_3:-30716127 None:intergenic
TGATGCTCAAATGGAAGAAG+AGG 0.544967 6_3:+30714923 Msa0947660:CDS
AAAAGGGGATTGGAATTGAT+GGG 0.547783 6_3:+30716336 Msa0947660:CDS
AAACGTTCAAAACAAACACT+TGG 0.550087 6_3:+30716659 Msa0947660:three_prime_UTR
AGAGGATTGCATTGGAGGAG+AGG 0.560680 6_3:+30716367 Msa0947660:CDS
GAAATCTGAGAGGATTGCAT+TGG 0.563890 6_3:+30716359 Msa0947660:CDS
AACCACATATCCAAACGTAC+TGG 0.567063 6_3:-30716590 None:intergenic
AAAGAATATGCTAAAATGGA+AGG 0.575746 6_3:+30716228 Msa0947660:CDS
TTTAGGAATAAGTTTGACTG+TGG 0.581440 6_3:+30716038 Msa0947660:intron
CAATTCAAAAGCGGAATGAG+TGG 0.584388 6_3:+30715228 Msa0947660:CDS
ATGTCTTCGTCAGGCACAAG+AGG 0.600940 6_3:+30714873 Msa0947660:CDS
AACATGGACGACGTGAAAAG+GGG 0.602059 6_3:+30716321 Msa0947660:CDS
TAAGTTTGACTGTGGATCAG+TGG 0.608779 6_3:+30716046 Msa0947660:CDS
GAATATGCTAAAATGGAAGG+TGG 0.613411 6_3:+30716231 Msa0947660:CDS
TAAATAGAATCTCATTAAGG+AGG 0.613523 6_3:-30714782 None:intergenic
GGTCCCAGTCAGAACTGGGA+GGG 0.621909 6_3:+30716124 Msa0947660:CDS
AGAAAGTTACAATTCAAAAG+CGG 0.632985 6_3:+30715219 Msa0947660:CDS
GAAGAAGCATATATAAAACT+GGG 0.640059 6_3:+30716099 Msa0947660:CDS
AGATATCCAAATCTTCAAGT+CGG 0.641192 6_3:-30716632 None:intergenic
GTGGAATGTCCTTCTAACCC+AGG 0.643475 6_3:+30715299 Msa0947660:CDS
CCAGCAAATTAACATTAGCA+AGG 0.646108 6_3:-30714823 None:intergenic
AAGCATATATAAAACTGGGA+GGG 0.653918 6_3:+30716103 Msa0947660:CDS
GAAGCATATATAAAACTGGG+AGG 0.661078 6_3:+30716102 Msa0947660:CDS
AAAGGGGATTGGAATTGATG+GGG 0.671071 6_3:+30716337 Msa0947660:CDS
AATTGATGGGGAAATCTGAG+AGG 0.674174 6_3:+30716349 Msa0947660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTTTTTATTTATCTA+AGG - chr6_3:30715044-30715063 None:intergenic 10.0%
!!! CATTTTTTTTTATTTATCTA+AGG - chr6_3:30715044-30715063 None:intergenic 10.0%
!! AAATAAATAGAATCTCATTA+AGG - chr6_3:30714788-30714807 None:intergenic 15.0%
!!! AAAAAAAAAAGTACAACTTT+AGG + chr6_3:30715614-30715633 Msa0947660:intron 15.0%
!! AAAAAAGTAATTTCAAAAGT+AGG + chr6_3:30715904-30715923 Msa0947660:intron 15.0%
!! AAATAAATAGAATCTCATTA+AGG - chr6_3:30714788-30714807 None:intergenic 15.0%
!!! AAAAAAAAAAGTACAACTTT+AGG + chr6_3:30715614-30715633 Msa0947660:intron 15.0%
!! AAAAAAGTAATTTCAAAAGT+AGG + chr6_3:30715904-30715923 Msa0947660:intron 15.0%
!!! CTTTTTCTACTTGTTTATTT+TGG + chr6_3:30715009-30715028 Msa0947660:intron 20.0%
!!! TTTGAATTGTAACTTTCTTT+TGG - chr6_3:30715217-30715236 None:intergenic 20.0%
!! TTTAAAAACAAACTTCCTAA+TGG - chr6_3:30715273-30715292 None:intergenic 20.0%
!! TAAAATTACAGATAAAGTCA+AGG - chr6_3:30715949-30715968 None:intergenic 20.0%
!!! TTTTATATATGCTTCTTCTA+TGG - chr6_3:30716097-30716116 None:intergenic 20.0%
!!! GTAATTTTTAGACTGTTTTA+TGG + chr6_3:30716478-30716497 Msa0947660:exon 20.0%
!!! ATTTACAAACTGTTTTGTTT+TGG + chr6_3:30716508-30716527 Msa0947660:three_prime_UTR 20.0%
!!! AACATATACATTGTTTGTTT+TGG + chr6_3:30716551-30716570 Msa0947660:three_prime_UTR 20.0%
!!! CTTTTTCTACTTGTTTATTT+TGG + chr6_3:30715009-30715028 Msa0947660:intron 20.0%
!!! TTTGAATTGTAACTTTCTTT+TGG - chr6_3:30715217-30715236 None:intergenic 20.0%
!! TTTAAAAACAAACTTCCTAA+TGG - chr6_3:30715273-30715292 None:intergenic 20.0%
!! TAAAATTACAGATAAAGTCA+AGG - chr6_3:30715949-30715968 None:intergenic 20.0%
!!! TTTTATATATGCTTCTTCTA+TGG - chr6_3:30716097-30716116 None:intergenic 20.0%
!!! GTAATTTTTAGACTGTTTTA+TGG + chr6_3:30716478-30716497 Msa0947660:exon 20.0%
!!! ATTTACAAACTGTTTTGTTT+TGG + chr6_3:30716508-30716527 Msa0947660:three_prime_UTR 20.0%
!!! AACATATACATTGTTTGTTT+TGG + chr6_3:30716551-30716570 Msa0947660:three_prime_UTR 20.0%
! TAAATAGAATCTCATTAAGG+AGG - chr6_3:30714785-30714804 None:intergenic 25.0%
! AGAAAGTTACAATTCAAAAG+CGG + chr6_3:30715219-30715238 Msa0947660:CDS 25.0%
!!! AGGAAGTTTGTTTTTAAACA+CGG + chr6_3:30715275-30715294 Msa0947660:CDS 25.0%
!!! ACTTTCTTTTTCAAGTAACA+TGG - chr6_3:30715415-30715434 None:intergenic 25.0%
!! TAAAAAGTATGCAAACTTTG+AGG - chr6_3:30715438-30715457 None:intergenic 25.0%
! GAAAACAATAAAACCCAAAT+GGG - chr6_3:30715486-30715505 None:intergenic 25.0%
! AGAAAACAATAAAACCCAAA+TGG - chr6_3:30715487-30715506 None:intergenic 25.0%
! TTCTTAAGATTGTGTTTGTT+AGG - chr6_3:30715779-30715798 None:intergenic 25.0%
! TATAACACAAAATCAGAGTT+AGG + chr6_3:30715815-30715834 Msa0947660:intron 25.0%
! AAAATTTAAGTACACATCCT+TGG + chr6_3:30715844-30715863 Msa0947660:intron 25.0%
!!! CTTTTTTTATCTTGTCACTA+AGG - chr6_3:30715891-30715910 None:intergenic 25.0%
!!! TTTCTATTTTTCTGCGTTTT+AGG + chr6_3:30716021-30716040 Msa0947660:intron 25.0%
!! AGAAGAAGCATATATAAAAC+TGG + chr6_3:30716098-30716117 Msa0947660:CDS 25.0%
!! GAAGAAGCATATATAAAACT+GGG + chr6_3:30716099-30716118 Msa0947660:CDS 25.0%
! GATTTGAAAACGAAAGAAAT+AGG + chr6_3:30716189-30716208 Msa0947660:CDS 25.0%
!!! CATTTTAGCATATTCTTTCT+TGG - chr6_3:30716226-30716245 None:intergenic 25.0%
! CAAGAAAGAATATGCTAAAA+TGG + chr6_3:30716224-30716243 Msa0947660:CDS 25.0%
! AAAGAATATGCTAAAATGGA+AGG + chr6_3:30716228-30716247 Msa0947660:CDS 25.0%
!! ATTCGAAATTGATGTGATTT+TGG + chr6_3:30716290-30716309 Msa0947660:CDS 25.0%
! ATGTTTAGCAAGAGAATATA+TGG - chr6_3:30716536-30716555 None:intergenic 25.0%
!!! TTGTTTTGGTGATTGTAATA+TGG + chr6_3:30716565-30716584 Msa0947660:three_prime_UTR 25.0%
!! GAAATGGATTTGAATTTCTA+TGG + chr6_3:30716711-30716730 Msa0947660:three_prime_UTR 25.0%
! TAAATAGAATCTCATTAAGG+AGG - chr6_3:30714785-30714804 None:intergenic 25.0%
! AGAAAGTTACAATTCAAAAG+CGG + chr6_3:30715219-30715238 Msa0947660:CDS 25.0%
!!! AGGAAGTTTGTTTTTAAACA+CGG + chr6_3:30715275-30715294 Msa0947660:CDS 25.0%
!!! ACTTTCTTTTTCAAGTAACA+TGG - chr6_3:30715415-30715434 None:intergenic 25.0%
!! TAAAAAGTATGCAAACTTTG+AGG - chr6_3:30715438-30715457 None:intergenic 25.0%
! GAAAACAATAAAACCCAAAT+GGG - chr6_3:30715486-30715505 None:intergenic 25.0%
! AGAAAACAATAAAACCCAAA+TGG - chr6_3:30715487-30715506 None:intergenic 25.0%
! TTCTTAAGATTGTGTTTGTT+AGG - chr6_3:30715779-30715798 None:intergenic 25.0%
! TATAACACAAAATCAGAGTT+AGG + chr6_3:30715815-30715834 Msa0947660:intron 25.0%
! AAAATTTAAGTACACATCCT+TGG + chr6_3:30715844-30715863 Msa0947660:intron 25.0%
!!! CTTTTTTTATCTTGTCACTA+AGG - chr6_3:30715891-30715910 None:intergenic 25.0%
!!! TTTCTATTTTTCTGCGTTTT+AGG + chr6_3:30716021-30716040 Msa0947660:intron 25.0%
!! AGAAGAAGCATATATAAAAC+TGG + chr6_3:30716098-30716117 Msa0947660:CDS 25.0%
!! GAAGAAGCATATATAAAACT+GGG + chr6_3:30716099-30716118 Msa0947660:CDS 25.0%
! GATTTGAAAACGAAAGAAAT+AGG + chr6_3:30716189-30716208 Msa0947660:CDS 25.0%
!!! CATTTTAGCATATTCTTTCT+TGG - chr6_3:30716226-30716245 None:intergenic 25.0%
! CAAGAAAGAATATGCTAAAA+TGG + chr6_3:30716224-30716243 Msa0947660:CDS 25.0%
! AAAGAATATGCTAAAATGGA+AGG + chr6_3:30716228-30716247 Msa0947660:CDS 25.0%
!! ATTCGAAATTGATGTGATTT+TGG + chr6_3:30716290-30716309 Msa0947660:CDS 25.0%
! ATGTTTAGCAAGAGAATATA+TGG - chr6_3:30716536-30716555 None:intergenic 25.0%
!!! TTGTTTTGGTGATTGTAATA+TGG + chr6_3:30716565-30716584 Msa0947660:three_prime_UTR 25.0%
ATACTTTGCAGATGAATAGA+TGG - chr6_3:30714983-30715002 None:intergenic 30.0%
AGACAAAATTTGTCTCCATT+AGG + chr6_3:30715255-30715274 Msa0947660:CDS 30.0%
! AAGCACAATACATTTTACCT+GGG - chr6_3:30715319-30715338 None:intergenic 30.0%
! AAAGCACAATACATTTTACC+TGG - chr6_3:30715320-30715339 None:intergenic 30.0%
ACAAAACTAAAATGACATCG+AGG - chr6_3:30715356-30715375 None:intergenic 30.0%
AGTAACATGGATAAACTTTG+AGG - chr6_3:30715402-30715421 None:intergenic 30.0%
!!! TGGGTTTTATTGTTTTCTGT+TGG + chr6_3:30715489-30715508 Msa0947660:intron 30.0%
GCAAATAACCATAGTACATA+TGG + chr6_3:30715716-30715735 Msa0947660:intron 30.0%
CAATCTTACCATATGTACTA+TGG - chr6_3:30715727-30715746 None:intergenic 30.0%
! TTAAGATTGTGTTTGTTAGG+AGG - chr6_3:30715776-30715795 None:intergenic 30.0%
GTGTTATATTTGAGTGTTTC+AGG - chr6_3:30715803-30715822 None:intergenic 30.0%
! GTATGCATTTTTAATCTCCA+AGG - chr6_3:30715864-30715883 None:intergenic 30.0%
TTTAGGAATAAGTTTGACTG+TGG + chr6_3:30716038-30716057 Msa0947660:intron 30.0%
AAGCATATATAAAACTGGGA+GGG + chr6_3:30716103-30716122 Msa0947660:CDS 30.0%
ATCTATATTTGCCTCTTTCT+TGG - chr6_3:30716172-30716191 None:intergenic 30.0%
AAAACGAAAGAAATAGGTTG+TGG + chr6_3:30716195-30716214 Msa0947660:CDS 30.0%
AGATATCCAAATCTTCAAGT+CGG - chr6_3:30716635-30716654 None:intergenic 30.0%
AAACGTTCAAAACAAACACT+TGG + chr6_3:30716659-30716678 Msa0947660:three_prime_UTR 30.0%
CAAAGAAAACAAGCAACAAA+AGG - chr6_3:30716692-30716711 None:intergenic 30.0%
!! GTTGCTTGTTTTCTTTGAAA+TGG + chr6_3:30716695-30716714 Msa0947660:three_prime_UTR 30.0%
ATACTTTGCAGATGAATAGA+TGG - chr6_3:30714983-30715002 None:intergenic 30.0%
AGACAAAATTTGTCTCCATT+AGG + chr6_3:30715255-30715274 Msa0947660:CDS 30.0%
! AAGCACAATACATTTTACCT+GGG - chr6_3:30715319-30715338 None:intergenic 30.0%
! AAAGCACAATACATTTTACC+TGG - chr6_3:30715320-30715339 None:intergenic 30.0%
ACAAAACTAAAATGACATCG+AGG - chr6_3:30715356-30715375 None:intergenic 30.0%
AGTAACATGGATAAACTTTG+AGG - chr6_3:30715402-30715421 None:intergenic 30.0%
!!! TGGGTTTTATTGTTTTCTGT+TGG + chr6_3:30715489-30715508 Msa0947660:intron 30.0%
GCAAATAACCATAGTACATA+TGG + chr6_3:30715716-30715735 Msa0947660:intron 30.0%
CAATCTTACCATATGTACTA+TGG - chr6_3:30715727-30715746 None:intergenic 30.0%
! TTAAGATTGTGTTTGTTAGG+AGG - chr6_3:30715776-30715795 None:intergenic 30.0%
GTGTTATATTTGAGTGTTTC+AGG - chr6_3:30715803-30715822 None:intergenic 30.0%
! GTATGCATTTTTAATCTCCA+AGG - chr6_3:30715864-30715883 None:intergenic 30.0%
TTTAGGAATAAGTTTGACTG+TGG + chr6_3:30716038-30716057 Msa0947660:intron 30.0%
AAGCATATATAAAACTGGGA+GGG + chr6_3:30716103-30716122 Msa0947660:CDS 30.0%
ATCTATATTTGCCTCTTTCT+TGG - chr6_3:30716172-30716191 None:intergenic 30.0%
AAAACGAAAGAAATAGGTTG+TGG + chr6_3:30716195-30716214 Msa0947660:CDS 30.0%
AGATATCCAAATCTTCAAGT+CGG - chr6_3:30716635-30716654 None:intergenic 30.0%
AAACGTTCAAAACAAACACT+TGG + chr6_3:30716659-30716678 Msa0947660:three_prime_UTR 30.0%
CAAAGAAAACAAGCAACAAA+AGG - chr6_3:30716692-30716711 None:intergenic 30.0%
!! GTTGCTTGTTTTCTTTGAAA+TGG + chr6_3:30716695-30716714 Msa0947660:three_prime_UTR 30.0%
CCAGCAAATTAACATTAGCA+AGG - chr6_3:30714826-30714845 None:intergenic 35.0%
!! CCTTGCTAATGTTAATTTGC+TGG + chr6_3:30714823-30714842 Msa0947660:five_prime_UTR 35.0%
TATTAGACAATGTCTTCGTC+AGG + chr6_3:30714864-30714883 Msa0947660:exon 35.0%
AGAAATGGATGATGCTCAAA+TGG + chr6_3:30714914-30714933 Msa0947660:CDS 35.0%
!!! GTTTGTTTTTAAACACGGAG+TGG + chr6_3:30715280-30715299 Msa0947660:CDS 35.0%
!! TACATTTTACCTGGGTTAGA+AGG - chr6_3:30715311-30715330 None:intergenic 35.0%
TGTCATCTTTGATTCCCATT+TGG + chr6_3:30715469-30715488 Msa0947660:intron 35.0%
GTCATCTTTGATTCCCATTT+GGG + chr6_3:30715470-30715489 Msa0947660:intron 35.0%
AGACAACATGCACCATATAT+AGG - chr6_3:30715520-30715539 None:intergenic 35.0%
AGATAAAGTCAAGGATGTGT+AGG - chr6_3:30715940-30715959 None:intergenic 35.0%
! AGGCATATTTGCCTTTAAGA+TGG - chr6_3:30716073-30716092 None:intergenic 35.0%
ATATATGCTTCTTCTATGGC+AGG - chr6_3:30716093-30716112 None:intergenic 35.0%
GAAGCATATATAAAACTGGG+AGG + chr6_3:30716102-30716121 Msa0947660:CDS 35.0%
GAATATGCTAAAATGGAAGG+TGG + chr6_3:30716231-30716250 Msa0947660:CDS 35.0%
! CGAAATTGATGTGATTTTGG+CGG + chr6_3:30716293-30716312 Msa0947660:CDS 35.0%
!! GAAATTGATGTGATTTTGGC+GGG + chr6_3:30716294-30716313 Msa0947660:CDS 35.0%
!! AAATTGATGTGATTTTGGCG+GGG + chr6_3:30716295-30716314 Msa0947660:CDS 35.0%
AAAAGGGGATTGGAATTGAT+GGG + chr6_3:30716336-30716355 Msa0947660:CDS 35.0%
TAATATGGTACCAGTACGTT+TGG + chr6_3:30716580-30716599 Msa0947660:three_prime_UTR 35.0%
CCAGCAAATTAACATTAGCA+AGG - chr6_3:30714826-30714845 None:intergenic 35.0%
!! CCTTGCTAATGTTAATTTGC+TGG + chr6_3:30714823-30714842 Msa0947660:five_prime_UTR 35.0%
TATTAGACAATGTCTTCGTC+AGG + chr6_3:30714864-30714883 Msa0947660:exon 35.0%
AGAAATGGATGATGCTCAAA+TGG + chr6_3:30714914-30714933 Msa0947660:CDS 35.0%
!!! GTTTGTTTTTAAACACGGAG+TGG + chr6_3:30715280-30715299 Msa0947660:CDS 35.0%
!! TACATTTTACCTGGGTTAGA+AGG - chr6_3:30715311-30715330 None:intergenic 35.0%
TGTCATCTTTGATTCCCATT+TGG + chr6_3:30715469-30715488 Msa0947660:intron 35.0%
GTCATCTTTGATTCCCATTT+GGG + chr6_3:30715470-30715489 Msa0947660:intron 35.0%
AGACAACATGCACCATATAT+AGG - chr6_3:30715520-30715539 None:intergenic 35.0%
AGATAAAGTCAAGGATGTGT+AGG - chr6_3:30715940-30715959 None:intergenic 35.0%
! AGGCATATTTGCCTTTAAGA+TGG - chr6_3:30716073-30716092 None:intergenic 35.0%
ATATATGCTTCTTCTATGGC+AGG - chr6_3:30716093-30716112 None:intergenic 35.0%
GAAGCATATATAAAACTGGG+AGG + chr6_3:30716102-30716121 Msa0947660:CDS 35.0%
GAATATGCTAAAATGGAAGG+TGG + chr6_3:30716231-30716250 Msa0947660:CDS 35.0%
! CGAAATTGATGTGATTTTGG+CGG + chr6_3:30716293-30716312 Msa0947660:CDS 35.0%
!! GAAATTGATGTGATTTTGGC+GGG + chr6_3:30716294-30716313 Msa0947660:CDS 35.0%
!! AAATTGATGTGATTTTGGCG+GGG + chr6_3:30716295-30716314 Msa0947660:CDS 35.0%
AAAAGGGGATTGGAATTGAT+GGG + chr6_3:30716336-30716355 Msa0947660:CDS 35.0%
TAATATGGTACCAGTACGTT+TGG + chr6_3:30716580-30716599 Msa0947660:three_prime_UTR 35.0%
TGATGCTCAAATGGAAGAAG+AGG + chr6_3:30714923-30714942 Msa0947660:CDS 40.0%
CAATTCAAAAGCGGAATGAG+TGG + chr6_3:30715228-30715247 Msa0947660:CDS 40.0%
CAACATGCACCATATATAGG+AGG - chr6_3:30715517-30715536 None:intergenic 40.0%
TAAGTTTGACTGTGGATCAG+TGG + chr6_3:30716046-30716065 Msa0947660:CDS 40.0%
GAAAAGGGGATTGGAATTGA+TGG + chr6_3:30716335-30716354 Msa0947660:CDS 40.0%
AAAGGGGATTGGAATTGATG+GGG + chr6_3:30716337-30716356 Msa0947660:CDS 40.0%
AATTGATGGGGAAATCTGAG+AGG + chr6_3:30716349-30716368 Msa0947660:CDS 40.0%
GAAATCTGAGAGGATTGCAT+TGG + chr6_3:30716359-30716378 Msa0947660:CDS 40.0%
ACGATCCATAACCTTCTTCT+CGG - chr6_3:30716412-30716431 None:intergenic 40.0%
TACCAGTACGTTTGGATATG+TGG + chr6_3:30716588-30716607 Msa0947660:three_prime_UTR 40.0%
AACCACATATCCAAACGTAC+TGG - chr6_3:30716593-30716612 None:intergenic 40.0%
!! TAAGCACCGACTTGAAGATT+TGG + chr6_3:30716626-30716645 Msa0947660:three_prime_UTR 40.0%
TGATGCTCAAATGGAAGAAG+AGG + chr6_3:30714923-30714942 Msa0947660:CDS 40.0%
CAATTCAAAAGCGGAATGAG+TGG + chr6_3:30715228-30715247 Msa0947660:CDS 40.0%
CAACATGCACCATATATAGG+AGG - chr6_3:30715517-30715536 None:intergenic 40.0%
TAAGTTTGACTGTGGATCAG+TGG + chr6_3:30716046-30716065 Msa0947660:CDS 40.0%
GAAAAGGGGATTGGAATTGA+TGG + chr6_3:30716335-30716354 Msa0947660:CDS 40.0%
AAAGGGGATTGGAATTGATG+GGG + chr6_3:30716337-30716356 Msa0947660:CDS 40.0%
AATTGATGGGGAAATCTGAG+AGG + chr6_3:30716349-30716368 Msa0947660:CDS 40.0%
GAAATCTGAGAGGATTGCAT+TGG + chr6_3:30716359-30716378 Msa0947660:CDS 40.0%
ACGATCCATAACCTTCTTCT+CGG - chr6_3:30716412-30716431 None:intergenic 40.0%
TACCAGTACGTTTGGATATG+TGG + chr6_3:30716588-30716607 Msa0947660:three_prime_UTR 40.0%
AACCACATATCCAAACGTAC+TGG - chr6_3:30716593-30716612 None:intergenic 40.0%
!! TAAGCACCGACTTGAAGATT+TGG + chr6_3:30716626-30716645 Msa0947660:three_prime_UTR 40.0%
TGGTGAGCTTGTAGCAGAAA+TGG + chr6_3:30714899-30714918 Msa0947660:CDS 45.0%
! CTGTTGGTGCCTCCTATATA+TGG + chr6_3:30715505-30715524 Msa0947660:intron 45.0%
GGATCAGTGGTCCATCTTAA+AGG + chr6_3:30716059-30716078 Msa0947660:CDS 45.0%
AACAAAGCGTGCCAAGAAAG+AGG + chr6_3:30716158-30716177 Msa0947660:CDS 45.0%
TGAACATGGACGACGTGAAA+AGG + chr6_3:30716319-30716338 Msa0947660:CDS 45.0%
GAACATGGACGACGTGAAAA+GGG + chr6_3:30716320-30716339 Msa0947660:CDS 45.0%
AACATGGACGACGTGAAAAG+GGG + chr6_3:30716321-30716340 Msa0947660:CDS 45.0%
ATCTGAGAGGATTGCATTGG+AGG + chr6_3:30716362-30716381 Msa0947660:CDS 45.0%
TAACCTTCTTCTCGGCAATC+TGG - chr6_3:30716404-30716423 None:intergenic 45.0%
GATTGCCGAGAAGAAGGTTA+TGG + chr6_3:30716404-30716423 Msa0947660:CDS 45.0%
! GGATCGTAGACAGCTGATTT+CGG + chr6_3:30716425-30716444 Msa0947660:CDS 45.0%
AGACTGGATTGCAGGCATTT+CGG + chr6_3:30716451-30716470 Msa0947660:CDS 45.0%
TGGTGAGCTTGTAGCAGAAA+TGG + chr6_3:30714899-30714918 Msa0947660:CDS 45.0%
! CTGTTGGTGCCTCCTATATA+TGG + chr6_3:30715505-30715524 Msa0947660:intron 45.0%
GGATCAGTGGTCCATCTTAA+AGG + chr6_3:30716059-30716078 Msa0947660:CDS 45.0%
AACAAAGCGTGCCAAGAAAG+AGG + chr6_3:30716158-30716177 Msa0947660:CDS 45.0%
TGAACATGGACGACGTGAAA+AGG + chr6_3:30716319-30716338 Msa0947660:CDS 45.0%
GAACATGGACGACGTGAAAA+GGG + chr6_3:30716320-30716339 Msa0947660:CDS 45.0%
AACATGGACGACGTGAAAAG+GGG + chr6_3:30716321-30716340 Msa0947660:CDS 45.0%
ATCTGAGAGGATTGCATTGG+AGG + chr6_3:30716362-30716381 Msa0947660:CDS 45.0%
TAACCTTCTTCTCGGCAATC+TGG - chr6_3:30716404-30716423 None:intergenic 45.0%
GATTGCCGAGAAGAAGGTTA+TGG + chr6_3:30716404-30716423 Msa0947660:CDS 45.0%
! GGATCGTAGACAGCTGATTT+CGG + chr6_3:30716425-30716444 Msa0947660:CDS 45.0%
AGACTGGATTGCAGGCATTT+CGG + chr6_3:30716451-30716470 Msa0947660:CDS 45.0%
ATGTCTTCGTCAGGCACAAG+AGG + chr6_3:30714873-30714892 Msa0947660:CDS 50.0%
GTGGAATGTCCTTCTAACCC+AGG + chr6_3:30715299-30715318 Msa0947660:CDS 50.0%
!! GGCACGCTTTGTTTCTGACT+GGG - chr6_3:30716151-30716170 None:intergenic 50.0%
!! TGGCACGCTTTGTTTCTGAC+TGG - chr6_3:30716152-30716171 None:intergenic 50.0%
AGAGGATTGCATTGGAGGAG+AGG + chr6_3:30716367-30716386 Msa0947660:CDS 50.0%
CATTGGAGGAGAGGTGGAAT+AGG + chr6_3:30716376-30716395 Msa0947660:CDS 50.0%
GTTCCAGATTGCCGAGAAGA+AGG + chr6_3:30716398-30716417 Msa0947660:CDS 50.0%
! CAGCTGATTTCGGAGAAGAC+TGG + chr6_3:30716435-30716454 Msa0947660:CDS 50.0%
TTCGGAGAAGACTGGATTGC+AGG + chr6_3:30716443-30716462 Msa0947660:CDS 50.0%
ATGTCTTCGTCAGGCACAAG+AGG + chr6_3:30714873-30714892 Msa0947660:CDS 50.0%
GTGGAATGTCCTTCTAACCC+AGG + chr6_3:30715299-30715318 Msa0947660:CDS 50.0%
!! GGCACGCTTTGTTTCTGACT+GGG - chr6_3:30716151-30716170 None:intergenic 50.0%
!! TGGCACGCTTTGTTTCTGAC+TGG - chr6_3:30716152-30716171 None:intergenic 50.0%
AGAGGATTGCATTGGAGGAG+AGG + chr6_3:30716367-30716386 Msa0947660:CDS 50.0%
CATTGGAGGAGAGGTGGAAT+AGG + chr6_3:30716376-30716395 Msa0947660:CDS 50.0%
GTTCCAGATTGCCGAGAAGA+AGG + chr6_3:30716398-30716417 Msa0947660:CDS 50.0%
! CAGCTGATTTCGGAGAAGAC+TGG + chr6_3:30716435-30716454 Msa0947660:CDS 50.0%
TTCGGAGAAGACTGGATTGC+AGG + chr6_3:30716443-30716462 Msa0947660:CDS 50.0%
TCGTCAGGCACAAGAGGAAC+TGG + chr6_3:30714879-30714898 Msa0947660:CDS 55.0%
!! GATTTTGGCGGGGCTGAACA+TGG + chr6_3:30716305-30716324 Msa0947660:CDS 55.0%
GGACGACGTGAAAAGGGGAT+TGG + chr6_3:30716326-30716345 Msa0947660:CDS 55.0%
GGATTGCATTGGAGGAGAGG+TGG + chr6_3:30716370-30716389 Msa0947660:CDS 55.0%
TCGTCAGGCACAAGAGGAAC+TGG + chr6_3:30714879-30714898 Msa0947660:CDS 55.0%
!! GATTTTGGCGGGGCTGAACA+TGG + chr6_3:30716305-30716324 Msa0947660:CDS 55.0%
GGACGACGTGAAAAGGGGAT+TGG + chr6_3:30716326-30716345 Msa0947660:CDS 55.0%
GGATTGCATTGGAGGAGAGG+TGG + chr6_3:30716370-30716389 Msa0947660:CDS 55.0%
GGAGGGTCCCAGTCAGAACT+GGG + chr6_3:30716120-30716139 Msa0947660:CDS 60.0%
GGTCCCAGTCAGAACTGGGA+GGG + chr6_3:30716124-30716143 Msa0947660:CDS 60.0%
! GGACCCTCCCAGTTCTGACT+GGG - chr6_3:30716130-30716149 None:intergenic 60.0%
GGAGGGTCCCAGTCAGAACT+GGG + chr6_3:30716120-30716139 Msa0947660:CDS 60.0%
GGTCCCAGTCAGAACTGGGA+GGG + chr6_3:30716124-30716143 Msa0947660:CDS 60.0%
! GGACCCTCCCAGTTCTGACT+GGG - chr6_3:30716130-30716149 None:intergenic 60.0%
GGGAGGGTCCCAGTCAGAAC+TGG + chr6_3:30716119-30716138 Msa0947660:CDS 65.0%
GGGTCCCAGTCAGAACTGGG+AGG + chr6_3:30716123-30716142 Msa0947660:CDS 65.0%
! GGGACCCTCCCAGTTCTGAC+TGG - chr6_3:30716131-30716150 None:intergenic 65.0%
GGGAGGGTCCCAGTCAGAAC+TGG + chr6_3:30716119-30716138 Msa0947660:CDS 65.0%
GGGTCCCAGTCAGAACTGGG+AGG + chr6_3:30716123-30716142 Msa0947660:CDS 65.0%
! GGGACCCTCCCAGTTCTGAC+TGG - chr6_3:30716131-30716150 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 30714700 30716730 30714700 ID=Msa0947660;Name=Msa0947660
chr6_3 mRNA 30714700 30716730 30714700 ID=Msa0947660-mRNA-1;Parent=Msa0947660;Name=Msa0947660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=173|1|1|1|1|1|3|242|228
chr6_3 exon 30714700 30714998 30714700 ID=Msa0947660-mRNA-1:exon:8134;Parent=Msa0947660-mRNA-1
chr6_3 exon 30715206 30715320 30715206 ID=Msa0947660-mRNA-1:exon:8135;Parent=Msa0947660-mRNA-1
chr6_3 exon 30716043 30716730 30716043 ID=Msa0947660-mRNA-1:exon:8136;Parent=Msa0947660-mRNA-1
chr6_3 five_prime_UTR 30714700 30714872 30714700 ID=Msa0947660-mRNA-1:five_prime_utr;Parent=Msa0947660-mRNA-1
chr6_3 CDS 30714873 30714998 30714873 ID=Msa0947660-mRNA-1:cds;Parent=Msa0947660-mRNA-1
chr6_3 CDS 30715206 30715320 30715206 ID=Msa0947660-mRNA-1:cds;Parent=Msa0947660-mRNA-1
chr6_3 CDS 30716043 30716488 30716043 ID=Msa0947660-mRNA-1:cds;Parent=Msa0947660-mRNA-1
chr6_3 three_prime_UTR 30716489 30716730 30716489 ID=Msa0947660-mRNA-1:three_prime_utr;Parent=Msa0947660-mRNA-1
Gene Sequence

>Msa0947660

ATGTCTTCGTCAGGCACAAGAGGAACTGGTGAGCTTGTAGCAGAAATGGATGATGCTCAAATGGAAGAAGAGGAAGTTTCAGACAATAATGTCTACGATCATGATAACCATCTATTCATCTGCAAACTTAAAAACCAAAAGAAAGTTACAATTCAAAAGCGGAATGAGTGGAGTAAGACAAAATTTGTCTCCATTAGGAAGTTTGTTTTTAAACACGGAGTGGAATGTCCTTCTAACCCAGGAATAAGTTTGACTGTGGATCAGTGGTCCATCTTAAAGGCAAATATGCCTGCCATAGAAGAAGCATATATAAAACTGGGAGGGTCCCAGTCAGAACTGGGAGGGTCCCAGTCAGAAACAAAGCGTGCCAAGAAAGAGGCAAATATAGATTTGAAAACGAAAGAAATAGGTTGTGGTTCTGCCAAGAAAGAATATGCTAAAATGGAAGGTGGTGTTGATAAGAGTGTTATTTTGAGTCAAATGAATCGATTCGAAATTGATGTGATTTTGGCGGGGCTGAACATGGACGACGTGAAAAGGGGATTGGAATTGATGGGGAAATCTGAGAGGATTGCATTGGAGGAGAGGTGGAATAGGTTCCAGATTGCCGAGAAGAAGGTTATGGATCGTAGACAGCTGATTTCGGAGAAGACTGGATTGCAGGCATTTCGGAAAAGTAATTTTTAG

Protein sequence

>Msa0947660

MSSSGTRGTGELVAEMDDAQMEEEEVSDNNVYDHDNHLFICKLKNQKKVTIQKRNEWSKTKFVSIRKFVFKHGVECPSNPGISLTVDQWSILKANMPAIEEAYIKLGGSQSELGGSQSETKRAKKEANIDLKTKEIGCGSAKKEYAKMEGGVDKSVILSQMNRFEIDVILAGLNMDDVKRGLELMGKSERIALEERWNRFQIAEKKVMDRRQLISEKTGLQAFRKSNF*