AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662500 MtrunA17_Chr4g0004601 70.954 241 64 3 1 238 10 247 2.24e-104 313
Msa0662500 MtrunA17_Chr7g0235261 71.090 211 54 2 14 222 5 210 4.06e-103 310
Msa0662500 MtrunA17_Chr8g0336361 62.762 239 77 3 11 247 16 244 6.39e-92 282
Msa0662500 MtrunA17_Chr8g0362731 84.259 108 15 1 117 222 1 108 1.51e-52 176
Msa0662500 MtrunA17_Chr3g0128461 35.547 256 152 5 1 252 7 253 6.48e-46 161
Msa0662500 MtrunA17_Chr8g0364081 33.040 227 137 2 14 238 25 238 3.99e-39 143
Msa0662500 MtrunA17_Chr8g0362721 73.786 103 25 2 1 103 1 101 6.06e-36 124
Msa0662500 MtrunA17_Chr7g0215181 32.258 248 140 8 7 241 1 233 4.74e-27 109
Msa0662500 MtrunA17_Chr4g0070801 92.982 57 4 0 223 279 238 294 7.97e-27 105
Msa0662500 MtrunA17_Chr6g0472221 30.315 254 160 7 1 248 10 252 9.91e-26 105
Msa0662500 MtrunA17_Chr6g0472161 30.047 213 128 6 35 241 35 232 3.63e-23 97.4
Msa0662500 MtrunA17_Chr6g0457421 27.848 237 149 6 7 235 2 224 1.09e-21 94.4
Msa0662500 MtrunA17_Chr1g0203141 27.523 218 139 7 29 241 33 236 1.64e-21 94.0
Msa0662500 MtrunA17_Chr4g0063221 28.829 222 128 6 15 226 16 217 7.86e-21 92.0
Msa0662500 MtrunA17_Chr1g0193811 27.184 206 134 4 24 226 26 218 2.06e-19 87.8
Msa0662500 MtrunA17_Chr1g0154731 30.189 212 127 7 14 222 15 208 5.40e-19 86.7
Msa0662500 MtrunA17_Chr1g0203151 26.941 219 139 5 35 250 39 239 6.04e-19 86.3
Msa0662500 MtrunA17_Chr7g0262111 28.194 227 142 7 22 245 23 231 8.98e-18 82.8
Msa0662500 MtrunA17_Chr6g0479681 26.126 222 140 7 35 250 40 243 1.57e-17 82.0
Msa0662500 MtrunA17_Chr2g0308651 37.755 98 58 2 132 226 6 103 1.23e-12 67.4
Msa0662500 MtrunA17_Chr2g0313751 23.868 243 163 6 7 247 39 261 5.17e-12 65.9
Msa0662500 MtrunA17_Chr2g0308661 34.444 90 45 3 14 103 16 91 9.01e-12 60.5
Msa0662500 MtrunA17_Chr5g0446131 22.449 245 168 6 5 247 8 232 1.40e-11 64.3
Msa0662500 MtrunA17_Chr2g0313791 25.854 205 132 6 22 226 24 208 8.94e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662500 AT5G24910.2 41.475 217 115 5 32 243 38 247 1.89e-50 171
Msa0662500 AT5G24910.1 41.475 217 115 5 32 243 38 247 2.82e-49 171
Msa0662500 AT5G24900.1 38.034 234 125 6 32 256 38 260 1.13e-46 164
Msa0662500 AT5G24900.2 39.161 143 78 3 123 256 1 143 5.23e-24 100
Msa0662500 AT1G67110.2 29.730 222 137 4 7 226 11 215 3.06e-22 95.1
Msa0662500 AT2G46950.2 30.769 208 125 5 23 226 82 274 1.33e-21 94.0
Msa0662500 AT1G67110.1 29.817 218 134 4 7 222 11 211 1.34e-21 94.4
Msa0662500 AT2G46950.1 30.769 208 125 5 23 226 82 274 2.69e-21 93.6
Msa0662500 AT5G38450.2 25.439 228 152 4 7 231 10 222 2.59e-20 90.1
Msa0662500 AT4G27710.2 26.609 233 144 5 2 226 6 219 5.30e-20 89.0
Msa0662500 AT5G38450.1 23.985 271 181 6 7 274 10 258 7.92e-20 89.4
Msa0662500 AT4G27710.1 26.754 228 140 5 2 221 6 214 1.25e-19 89.0
Msa0662500 AT5G52400.1 27.686 242 145 8 14 241 18 243 3.71e-19 87.4
Msa0662500 AT2G26710.1 27.273 242 148 7 8 241 13 234 1.07e-18 85.9
Msa0662500 AT2G46960.2 29.858 211 125 6 24 226 26 221 3.72e-18 84.3
Msa0662500 AT3G14620.1 25.847 236 147 5 22 245 29 248 3.63e-13 69.7

Find 59 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCATCAAGTGGGTCAATT+TGG 0.172998 4_4:+251476 Msa0662500:CDS
CAAAGATATGGGTCCACTTT+TGG 0.188015 4_4:+251441 Msa0662500:CDS
ACCTTGTCTTGGTACAATTC+AGG 0.207026 4_4:-251523 None:intergenic
AGCTTTCCTCTTAGTGATTT+TGG 0.211938 4_4:-250085 None:intergenic
TTCTTATCTTTCCAAAGATA+TGG 0.245993 4_4:+251429 Msa0662500:CDS
CAACAGGAATGTTCAATCTT+TGG 0.280454 4_4:-252720 None:intergenic
CTAAACACCTCTTTGAATCT+TGG 0.293271 4_4:+251400 Msa0662500:CDS
GTGTTTCTATATCTCATAAC+TGG 0.332656 4_4:+250239 Msa0662500:CDS
CAAGATTCAAAGAGGTGTTT+AGG 0.333518 4_4:-251399 None:intergenic
TGGGACAGAACAGTCTTTAA+TGG 0.335746 4_4:+251345 Msa0662500:CDS
CTTCTCCACTTCTGAATATG+AGG 0.344472 4_4:-250277 None:intergenic
CGAATATAATGCTAAGATCT+TGG 0.360253 4_4:+251969 Msa0662500:CDS
CCTTGTCTTGGTACAATTCA+GGG 0.361388 4_4:-251522 None:intergenic
CAAAAGTGGACCCATATCTT+TGG 0.370103 4_4:-251440 None:intergenic
GATGGCTCTCGGAGCAGTTT+TGG 0.375697 4_4:+250024 Msa0662500:CDS
TCTTATCTTTCCAAAGATAT+GGG 0.378489 4_4:+251430 Msa0662500:CDS
ATCATCAAGTGGGTCAATTT+GGG 0.379928 4_4:+251477 Msa0662500:CDS
CTTGTTCTCAACTGCAAAGT+TGG 0.386423 4_4:-252681 None:intergenic
TAGATTCCTGCAGTGCTTTG+AGG 0.398509 4_4:-252495 None:intergenic
TTCTTCATCTTCAATCCATC+AGG 0.401465 4_4:-252457 None:intergenic
GACTTACCTTTACCTTGTCT+TGG 0.416172 4_4:-251534 None:intergenic
GAGGCTATGACAGAAAGATA+TGG 0.437968 4_4:+251992 Msa0662500:CDS
CCAGTTGAAAACAAGTATAC+TGG 0.445049 4_4:-251325 None:intergenic
AGGCTATGACAGAAAGATAT+GGG 0.460262 4_4:+251993 Msa0662500:CDS
GAATATAATGCTAAGATCTT+GGG 0.471214 4_4:+251970 Msa0662500:CDS
AGATCTTAGCATTATATTCG+TGG 0.471469 4_4:-251966 None:intergenic
TACTGGTGGCAGCATCCTGA+TGG 0.473972 4_4:+252442 Msa0662500:intron
TTGAGACCAAAATCACTAAG+AGG 0.477739 4_4:+250079 Msa0662500:CDS
CTCAACTGCAAAGTTGGAGC+TGG 0.492457 4_4:-252675 None:intergenic
ATATCTTTGGAAAGATAAGA+AGG 0.494162 4_4:-251427 None:intergenic
GAACAAGTATGTGCGATTAG+TGG 0.494270 4_4:+252697 Msa0662500:CDS
CAGAAGTGGAGAAGTCAATA+TGG 0.495667 4_4:+250286 Msa0662500:CDS
ATATTACCAAAGTAAAAGTC+AGG 0.495885 4_4:-250136 None:intergenic
TAACGTTGAAGGCAATGGTT+GGG 0.504502 4_4:+251930 Msa0662500:intron
CTTCATACGCAGGGTATTCG+TGG 0.515578 4_4:+250106 Msa0662500:CDS
ATTATACCTTGACCCAAAAG+TGG 0.526625 4_4:-251454 None:intergenic
GAGCGAGGCGATTGAGCAGA+AGG 0.538864 4_4:+252543 Msa0662500:CDS
ATAACGTTGAAGGCAATGGT+TGG 0.558462 4_4:+251929 Msa0662500:intron
GATTCAAAGAGGTGTTTAGG+AGG 0.559543 4_4:-251396 None:intergenic
TGTTCCCTCATATTCAGAAG+TGG 0.561271 4_4:+250272 Msa0662500:CDS
AGTTGTCCTCAAAGCACTGC+AGG 0.573521 4_4:+252489 Msa0662500:CDS
CCAAAGTAAAAGTCAGGAGA+CGG 0.579642 4_4:-250130 None:intergenic
GTTGAAGTTGTGATGGCTCT+CGG 0.583597 4_4:+250013 Msa0662500:CDS
CAAAGTAAAAGTCAGGAGAC+GGG 0.584248 4_4:-250129 None:intergenic
AAGGTATAATATCATCAAGT+GGG 0.585700 4_4:+251467 Msa0662500:CDS
CAAGGTATAATATCATCAAG+TGG 0.588754 4_4:+251466 Msa0662500:CDS
CTTGTCTTGGTACAATTCAG+GGG 0.596620 4_4:-251521 None:intergenic
TATAAATGTTGAAGTTGTGA+TGG 0.601165 4_4:+250006 Msa0662500:CDS
AAGAGGAAAGCTTCATACGC+AGG 0.601858 4_4:+250096 Msa0662500:CDS
CCCTGAATTGTACCAAGACA+AGG 0.614853 4_4:+251522 Msa0662500:CDS
AGGCTTTCCAAGATTCAAAG+AGG 0.623400 4_4:-251407 None:intergenic
GGTCAATTTGGGCTCATCAG+AGG 0.625718 4_4:+251488 Msa0662500:CDS
TTCTCCACTTCTGAATATGA+GGG 0.625862 4_4:-250276 None:intergenic
AGAGGAAAGCTTCATACGCA+GGG 0.641126 4_4:+250097 Msa0662500:CDS
TATAATGCTAAGATCTTGGG+AGG 0.649393 4_4:+251973 Msa0662500:CDS
AAATGAAAATGAATTGAGCG+AGG 0.672838 4_4:+252528 Msa0662500:CDS
GACAGATATAGTGATGGTGA+AGG 0.676335 4_4:+251369 Msa0662500:CDS
GGCTATGACAGAAAGATATG+GGG 0.682837 4_4:+251994 Msa0662500:CDS
AATGGTGACAGATATAGTGA+TGG 0.706183 4_4:+251363 Msa0662500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTATGTTTAGTTA+TGG + chr4_4:250363-250382 Msa0662500:intron 10.0%
!!! GAATTTTATTAAAAATGAAA+AGG + chr4_4:250438-250457 Msa0662500:intron 10.0%
!! TTTACTAAAATTAATACTAA+AGG - chr4_4:252611-252630 None:intergenic 10.0%
!! ATAAAATAAAATAAAAGTGG+TGG - chr4_4:250334-250353 None:intergenic 15.0%
!! TATATATGAAAGAAATACTA+AGG + chr4_4:251159-251178 Msa0662500:intron 15.0%
!! AAACTAAAACATGCAAAAAA+TGG - chr4_4:250060-250079 None:intergenic 20.0%
!! TTTATGTTTAGTTATGGTTA+AGG + chr4_4:250369-250388 Msa0662500:intron 20.0%
!! TCTTATCAAAGTGATTTAAA+GGG - chr4_4:250420-250439 None:intergenic 20.0%
!! TTCTTATCAAAGTGATTTAA+AGG - chr4_4:250421-250440 None:intergenic 20.0%
!!! TCCTAACTAACATTATTTTT+TGG + chr4_4:250899-250918 Msa0662500:intron 20.0%
!! TCCAAAAAATAATGTTAGTT+AGG - chr4_4:250903-250922 None:intergenic 20.0%
!!! ACTAACATTATTTTTTGGAT+TGG + chr4_4:250904-250923 Msa0662500:intron 20.0%
!! TCTTAGAATTAAACGTTAAA+AGG + chr4_4:251242-251261 Msa0662500:intron 20.0%
!!! TTTTTTGTAAATAACGTTGA+AGG + chr4_4:251919-251938 Msa0662500:intron 20.0%
!!! TCCATTTTAATCTTTTCTTT+TGG + chr4_4:252248-252267 Msa0662500:intron 20.0%
!! ACCAAAAGAAAAGATTAAAA+TGG - chr4_4:252252-252271 None:intergenic 20.0%
! TATAAATGTTGAAGTTGTGA+TGG + chr4_4:250006-250025 Msa0662500:CDS 25.0%
! ATATTACCAAAGTAAAAGTC+AGG - chr4_4:250139-250158 None:intergenic 25.0%
!!! CACATAATTTGTTTTGTTGT+TGG - chr4_4:250186-250205 None:intergenic 25.0%
!!! TAATCTTGACTTGGATATTT+TGG + chr4_4:250463-250482 Msa0662500:intron 25.0%
! ATAATTGTGGTATAGTTAGT+AGG - chr4_4:250631-250650 None:intergenic 25.0%
! CAAAATCATGTTAAGGAAAA+CGG - chr4_4:250805-250824 None:intergenic 25.0%
! ATTGAAATTGAAAGAATCAC+AGG - chr4_4:250842-250861 None:intergenic 25.0%
!!! ACATTATTTTTTGGATTGGA+TGG + chr4_4:250908-250927 Msa0662500:intron 25.0%
! AGATCTAGTTAAAAACCATT+GGG - chr4_4:251078-251097 None:intergenic 25.0%
! AAGATCTAGTTAAAAACCAT+TGG - chr4_4:251079-251098 None:intergenic 25.0%
!! AAATTTCATTTTACTCATGC+AGG + chr4_4:251301-251320 Msa0662500:intron 25.0%
!! ATATCTTTGGAAAGATAAGA+AGG - chr4_4:251430-251449 None:intergenic 25.0%
! TTCTTATCTTTCCAAAGATA+TGG + chr4_4:251429-251448 Msa0662500:CDS 25.0%
! TCTTATCTTTCCAAAGATAT+GGG + chr4_4:251430-251449 Msa0662500:CDS 25.0%
! AAGGTATAATATCATCAAGT+GGG + chr4_4:251467-251486 Msa0662500:CDS 25.0%
! TCTATTGAGAATAGTATTGT+GGG - chr4_4:251570-251589 None:intergenic 25.0%
! TTCTATTGAGAATAGTATTG+TGG - chr4_4:251571-251590 None:intergenic 25.0%
! GAATTTGAATATTGCATAGA+AGG + chr4_4:251588-251607 Msa0662500:intron 25.0%
! GTAAACAAATATGATTCAGA+AGG + chr4_4:251610-251629 Msa0662500:intron 25.0%
! ATAACAATATTATAACGCAG+AGG + chr4_4:251691-251710 Msa0662500:intron 25.0%
!!! TACAAAGTATTGTCAAATAG+TGG + chr4_4:251758-251777 Msa0662500:intron 25.0%
! GCTATAACATTGTATCATAT+TGG + chr4_4:251780-251799 Msa0662500:intron 25.0%
! GAATATAATGCTAAGATCTT+GGG + chr4_4:251970-251989 Msa0662500:CDS 25.0%
! TTACAGCAGGAAAATTATAT+GGG - chr4_4:252408-252427 None:intergenic 25.0%
! ATTACAGCAGGAAAATTATA+TGG - chr4_4:252409-252428 None:intergenic 25.0%
!!! TAATCTGCTTATTGTTTTAC+TGG + chr4_4:252425-252444 Msa0662500:intron 25.0%
! GTGTTTCTATATCTCATAAC+TGG + chr4_4:250239-250258 Msa0662500:CDS 30.0%
AATAAAAGTGGTGGTAAGAA+AGG - chr4_4:250325-250344 None:intergenic 30.0%
TATGAATGCATTGTTTGTCA+TGG + chr4_4:250593-250612 Msa0662500:intron 30.0%
TTGACAAGACACAATAATTG+TGG - chr4_4:250644-250663 None:intergenic 30.0%
ATTGAAAAGTAAGTTTCACC+TGG - chr4_4:250699-250718 None:intergenic 30.0%
! CGTTTTCCTTAACATGATTT+TGG + chr4_4:250803-250822 Msa0662500:intron 30.0%
ACAGAACCAAAATCATGTTA+AGG - chr4_4:250812-250831 None:intergenic 30.0%
TCCAAAGGACACTAATAATA+TGG + chr4_4:250983-251002 Msa0662500:intron 30.0%
CCAAAGGACACTAATAATAT+GGG + chr4_4:250984-251003 Msa0662500:intron 30.0%
ATCTAGTTAAAAACCATTGG+GGG - chr4_4:251076-251095 None:intergenic 30.0%
GATCTAGTTAAAAACCATTG+GGG - chr4_4:251077-251096 None:intergenic 30.0%
TAGATCTTATAAACCACTTG+AGG + chr4_4:251091-251110 Msa0662500:intron 30.0%
! GTTTTTCTTGCGTTTTCTTT+TGG - chr4_4:251187-251206 None:intergenic 30.0%
!! CAGTATACTTGTTTTCAACT+GGG + chr4_4:251326-251345 Msa0662500:CDS 30.0%
CAAGGTATAATATCATCAAG+TGG + chr4_4:251466-251485 Msa0662500:CDS 30.0%
TATTGAGAATAGTATTGTGG+GGG - chr4_4:251568-251587 None:intergenic 30.0%
CTATTGAGAATAGTATTGTG+GGG - chr4_4:251569-251588 None:intergenic 30.0%
AGATCTTAGCATTATATTCG+TGG - chr4_4:251969-251988 None:intergenic 30.0%
CGAATATAATGCTAAGATCT+TGG + chr4_4:251969-251988 Msa0662500:CDS 30.0%
AGGAACTCCAACATATAATT+TGG - chr4_4:252157-252176 None:intergenic 30.0%
AAATTATATGTTGGAGTTCC+TGG + chr4_4:252156-252175 Msa0662500:intron 30.0%
! GCATGATCATTGAAAGATTT+TGG + chr4_4:252189-252208 Msa0662500:intron 30.0%
TACAGCAGGAAAATTATATG+GGG - chr4_4:252407-252426 None:intergenic 30.0%
AAATGAAAATGAATTGAGCG+AGG + chr4_4:252528-252547 Msa0662500:CDS 30.0%
TTGAGACCAAAATCACTAAG+AGG + chr4_4:250079-250098 Msa0662500:CDS 35.0%
! AGCTTTCCTCTTAGTGATTT+TGG - chr4_4:250088-250107 None:intergenic 35.0%
!!! GTTTTGTTGTTGGAGCAAAA+GGG - chr4_4:250176-250195 None:intergenic 35.0%
!!! TGTTTTGTTGTTGGAGCAAA+AGG - chr4_4:250177-250196 None:intergenic 35.0%
TTCTCCACTTCTGAATATGA+GGG - chr4_4:250279-250298 None:intergenic 35.0%
GAAAAGGCTTAATCTTGACT+TGG + chr4_4:250454-250473 Msa0662500:intron 35.0%
TGCATTGTTTGTCATGGATT+AGG + chr4_4:250599-250618 Msa0662500:intron 35.0%
CCCATATTATTAGTGTCCTT+TGG - chr4_4:250987-251006 None:intergenic 35.0%
TACTAAACATTGTTCCAACC+AGG + chr4_4:251033-251052 Msa0662500:intron 35.0%
CCAGTTGAAAACAAGTATAC+TGG - chr4_4:251328-251347 None:intergenic 35.0%
!! CCAGTATACTTGTTTTCAAC+TGG + chr4_4:251325-251344 Msa0662500:CDS 35.0%
AATGGTGACAGATATAGTGA+TGG + chr4_4:251363-251382 Msa0662500:CDS 35.0%
!! CAAGATTCAAAGAGGTGTTT+AGG - chr4_4:251402-251421 None:intergenic 35.0%
CTAAACACCTCTTTGAATCT+TGG + chr4_4:251400-251419 Msa0662500:CDS 35.0%
!! AAAGATATGGGTCCACTTTT+GGG + chr4_4:251442-251461 Msa0662500:CDS 35.0%
ATTATACCTTGACCCAAAAG+TGG - chr4_4:251457-251476 None:intergenic 35.0%
TATCATCAAGTGGGTCAATT+TGG + chr4_4:251476-251495 Msa0662500:CDS 35.0%
ATCATCAAGTGGGTCAATTT+GGG + chr4_4:251477-251496 Msa0662500:CDS 35.0%
ATTGTACCAAGACAAGGTAA+AGG + chr4_4:251528-251547 Msa0662500:intron 35.0%
ATTGAGAATAGTATTGTGGG+GGG - chr4_4:251567-251586 None:intergenic 35.0%
AAGCATGTTTGCAAGAGTAA+TGG + chr4_4:251643-251662 Msa0662500:intron 35.0%
CTACTGAAAATTGACAACAC+TGG + chr4_4:251828-251847 Msa0662500:intron 35.0%
GTAAATAACGTTGAAGGCAA+TGG + chr4_4:251925-251944 Msa0662500:intron 35.0%
TATAATGCTAAGATCTTGGG+AGG + chr4_4:251973-251992 Msa0662500:CDS 35.0%
AGGCTATGACAGAAAGATAT+GGG + chr4_4:251993-252012 Msa0662500:CDS 35.0%
! AATTGCTAGAGTGTGTGTTT+TGG + chr4_4:252069-252088 Msa0662500:intron 35.0%
! ATTGCTAGAGTGTGTGTTTT+GGG + chr4_4:252070-252089 Msa0662500:intron 35.0%
TTTGGGAGCAATTATGTCAA+AGG + chr4_4:252087-252106 Msa0662500:intron 35.0%
CTCCTCTCCAAATTATATGT+TGG + chr4_4:252147-252166 Msa0662500:intron 35.0%
CTCCAACATATAATTTGGAG+AGG - chr4_4:252152-252171 None:intergenic 35.0%
!!! TTGAAAGATTTTGGTGCTCA+TGG + chr4_4:252198-252217 Msa0662500:intron 35.0%
AACAATAAGCAGATTACAGC+AGG - chr4_4:252421-252440 None:intergenic 35.0%
!! TCTGCTTATTGTTTTACTGG+TGG + chr4_4:252428-252447 Msa0662500:intron 35.0%
TTCTTCATCTTCAATCCATC+AGG - chr4_4:252460-252479 None:intergenic 35.0%
ACAGAAACACAACTCATAGA+TGG - chr4_4:252580-252599 None:intergenic 35.0%
CAAAGTAAAAGTCAGGAGAC+GGG - chr4_4:250132-250151 None:intergenic 40.0%
CCAAAGTAAAAGTCAGGAGA+CGG - chr4_4:250133-250152 None:intergenic 40.0%
TGTTCCCTCATATTCAGAAG+TGG + chr4_4:250272-250291 Msa0662500:CDS 40.0%
CTTCTCCACTTCTGAATATG+AGG - chr4_4:250280-250299 None:intergenic 40.0%
CAGAAGTGGAGAAGTCAATA+TGG + chr4_4:250286-250305 Msa0662500:CDS 40.0%
TCTTGTCAACCTGATCTGAA+TGG + chr4_4:250655-250674 Msa0662500:intron 40.0%
AAGGTTGAGATCAGTTAACC+AGG + chr4_4:250678-250697 Msa0662500:intron 40.0%
!! TCTGGCATTGATTTGAGATC+AGG - chr4_4:250730-250749 None:intergenic 40.0%
TTGATGTTGTAAGCGATCTC+TGG - chr4_4:250748-250767 None:intergenic 40.0%
TCTAACCCTGTACTTTCCAA+AGG + chr4_4:250968-250987 Msa0662500:intron 40.0%
! AGTGTCCTTTGGAAAGTACA+GGG - chr4_4:250976-250995 None:intergenic 40.0%
! TAGTGTCCTTTGGAAAGTAC+AGG - chr4_4:250977-250996 None:intergenic 40.0%
ACCACTTGAGGTCAAACATT+TGG + chr4_4:251103-251122 Msa0662500:intron 40.0%
ACCAAATGTTTGACCTCAAG+TGG - chr4_4:251107-251126 None:intergenic 40.0%
TGGGACAGAACAGTCTTTAA+TGG + chr4_4:251345-251364 Msa0662500:CDS 40.0%
! GACAGATATAGTGATGGTGA+AGG + chr4_4:251369-251388 Msa0662500:CDS 40.0%
!! GATTCAAAGAGGTGTTTAGG+AGG - chr4_4:251399-251418 None:intergenic 40.0%
AGGCTTTCCAAGATTCAAAG+AGG - chr4_4:251410-251429 None:intergenic 40.0%
CAAAAGTGGACCCATATCTT+TGG - chr4_4:251443-251462 None:intergenic 40.0%
! CAAAGATATGGGTCCACTTT+TGG + chr4_4:251441-251460 Msa0662500:CDS 40.0%
CTTGTCTTGGTACAATTCAG+GGG - chr4_4:251524-251543 None:intergenic 40.0%
CCTTGTCTTGGTACAATTCA+GGG - chr4_4:251525-251544 None:intergenic 40.0%
ACCTTGTCTTGGTACAATTC+AGG - chr4_4:251526-251545 None:intergenic 40.0%
GACTTACCTTTACCTTGTCT+TGG - chr4_4:251537-251556 None:intergenic 40.0%
CTGAAAATTGACAACACTGG+TGG + chr4_4:251831-251850 Msa0662500:intron 40.0%
ATAACGTTGAAGGCAATGGT+TGG + chr4_4:251929-251948 Msa0662500:intron 40.0%
TAACGTTGAAGGCAATGGTT+GGG + chr4_4:251930-251949 Msa0662500:intron 40.0%
GAGGCTATGACAGAAAGATA+TGG + chr4_4:251992-252011 Msa0662500:CDS 40.0%
GGCTATGACAGAAAGATATG+GGG + chr4_4:251994-252013 Msa0662500:CDS 40.0%
CACAACTCATAGATGGACAA+TGG - chr4_4:252573-252592 None:intergenic 40.0%
CTTGTTCTCAACTGCAAAGT+TGG - chr4_4:252684-252703 None:intergenic 40.0%
GAACAAGTATGTGCGATTAG+TGG + chr4_4:252697-252716 Msa0662500:CDS 40.0%
GTTGAAGTTGTGATGGCTCT+CGG + chr4_4:250013-250032 Msa0662500:CDS 45.0%
AAGAGGAAAGCTTCATACGC+AGG + chr4_4:250096-250115 Msa0662500:CDS 45.0%
AGAGGAAAGCTTCATACGCA+GGG + chr4_4:250097-250116 Msa0662500:CDS 45.0%
! CCGTCTCCTGACTTTTACTT+TGG + chr4_4:250130-250149 Msa0662500:CDS 45.0%
GTCAACCTGATCTGAATGGA+AGG + chr4_4:250659-250678 Msa0662500:intron 45.0%
CTCAACCTTCCATTCAGATC+AGG - chr4_4:250667-250686 None:intergenic 45.0%
!! GGCATTGATTTGAGATCAGG+CGG - chr4_4:250727-250746 None:intergenic 45.0%
ACTCGAGTTTGAATCCTGGT+TGG - chr4_4:251050-251069 None:intergenic 45.0%
GAGAACTCGAGTTTGAATCC+TGG - chr4_4:251054-251073 None:intergenic 45.0%
CCCTGAATTGTACCAAGACA+AGG + chr4_4:251522-251541 Msa0662500:CDS 45.0%
GAATAGTATTGTGGGGGGTA+TGG - chr4_4:251562-251581 None:intergenic 45.0%
! ATGTTGGAGTTCCTGGCTTT+AGG + chr4_4:252163-252182 Msa0662500:intron 45.0%
GATCATGCATACCTAAAGCC+AGG - chr4_4:252177-252196 None:intergenic 45.0%
TAGATTCCTGCAGTGCTTTG+AGG - chr4_4:252498-252517 None:intergenic 45.0%
!! TAAATAAAATAAAATAAAAG+TGG - chr4_4:250337-250356 None:intergenic 5.0%
! CTTCATACGCAGGGTATTCG+TGG + chr4_4:250106-250125 Msa0662500:CDS 50.0%
AAACTCGAGTTCTCCCCCAA+TGG + chr4_4:251060-251079 Msa0662500:intron 50.0%
!! ATGGGTCCACTTTTGGGTCA+AGG + chr4_4:251448-251467 Msa0662500:CDS 50.0%
GGTCAATTTGGGCTCATCAG+AGG + chr4_4:251488-251507 Msa0662500:CDS 50.0%
!! AGTTGTCCTCAAAGCACTGC+AGG + chr4_4:252489-252508 Msa0662500:CDS 50.0%
CTCAACTGCAAAGTTGGAGC+TGG - chr4_4:252678-252697 None:intergenic 50.0%
! GATGGCTCTCGGAGCAGTTT+TGG + chr4_4:250024-250043 Msa0662500:CDS 55.0%
TACTGGTGGCAGCATCCTGA+TGG + chr4_4:252442-252461 Msa0662500:intron 55.0%
GAGCGAGGCGATTGAGCAGA+AGG + chr4_4:252543-252562 Msa0662500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 250001 252730 250001 ID=Msa0662500;Name=Msa0662500
chr4_4 mRNA 250001 252730 250001 ID=Msa0662500-mRNA-1;Parent=Msa0662500;Name=Msa0662500-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0|0|0.2|1|1|5|0|279
chr4_4 exon 250001 250307 250001 ID=Msa0662500-mRNA-1:exon:88;Parent=Msa0662500-mRNA-1
chr4_4 exon 251323 251543 251323 ID=Msa0662500-mRNA-1:exon:89;Parent=Msa0662500-mRNA-1
chr4_4 exon 251941 252078 251941 ID=Msa0662500-mRNA-1:exon:90;Parent=Msa0662500-mRNA-1
chr4_4 exon 252454 252564 252454 ID=Msa0662500-mRNA-1:exon:91;Parent=Msa0662500-mRNA-1
chr4_4 exon 252668 252730 252668 ID=Msa0662500-mRNA-1:exon:92;Parent=Msa0662500-mRNA-1
chr4_4 CDS 250001 250307 250001 ID=Msa0662500-mRNA-1:cds;Parent=Msa0662500-mRNA-1
chr4_4 CDS 251323 251543 251323 ID=Msa0662500-mRNA-1:cds;Parent=Msa0662500-mRNA-1
chr4_4 CDS 251941 252078 251941 ID=Msa0662500-mRNA-1:cds;Parent=Msa0662500-mRNA-1
chr4_4 CDS 252454 252564 252454 ID=Msa0662500-mRNA-1:cds;Parent=Msa0662500-mRNA-1
chr4_4 CDS 252668 252730 252668 ID=Msa0662500-mRNA-1:cds;Parent=Msa0662500-mRNA-1
Gene Sequence

>Msa0662500

ATGAATATAAATGTTGAAGTTGTGATGGCTCTCGGAGCAGTTTTGGTTGCATTGATCCATTTTTTGCATGTTTTAGTTTTGAGACCAAAATCACTAAGAGGAAAGCTTCATACGCAGGGTATTCGTGGCCCGTCTCCTGACTTTTACTTTGGTAATATCAAAGAAATGAATACCCTTTTGCTCCAACAACAAAACAAATTATGTGTCAGACACAAAGAAGAACAAGATGAAGACGTTTGTGTTTCTATATCTCATAACTGGACTTCAACTTTGTTCCCTCATATTCAGAAGTGGAGAAGTCAATATGGACCAGTATACTTGTTTTCAACTGGGACAGAACAGTCTTTAATGGTGACAGATATAGTGATGGTGAAGGAAATCCTCCTAAACACCTCTTTGAATCTTGGAAAGCCTTCTTATCTTTCCAAAGATATGGGTCCACTTTTGGGTCAAGGTATAATATCATCAAGTGGGTCAATTTGGGCTCATCAGAGGAAGATAATCACCCCTGAATTGTACCAAGACAAGGCAATGGTTGGGAAAATAGTTGACTCCACGAATATAATGCTAAGATCTTGGGAGGCTATGACAGAAAGATATGGGGTAATTTCAGAGATTAAAGTAGATGAAGATTTGCGAAGCTTGTCAGCTGACATAATTGCTAGACATCCTGATGGATTGAAGATGAAGAAATTGAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTAGCATTGTAGTAAATGAAAATGAATTGAGCGAGGCGATTGAGCAGAAGATAAACTCCAGCTCCAACTTTGCAGTTGAGAACAAGTATGTGCGATTAGTGGCCAAAGATTGA

Protein sequence

>Msa0662500

MNINVEVVMALGAVLVALIHFLHVLVLRPKSLRGKLHTQGIRGPSPDFYFGNIKEMNTLLLQQQNKLCVRHKEEQDEDVCVSISHNWTSTLFPHIQKWRSQYGPVYLFSTGTEQSLMVTDIVMVKEILLNTSLNLGKPSYLSKDMGPLLGQGIISSSGSIWAHQRKIITPELYQDKAMVGKIVDSTNIMLRSWEAMTERYGVISEIKVDEDLRSLSADIIARHPDGLKMKKLRKVVLKALQESSIVVNENELSEAIEQKINSSSNFAVENKYVRLVAKD*