AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565730 MtrunA17_Chr8g0379761 74.317 183 45 2 141 322 28 209 4.58e-91 270
Msa0565730 MtrunA17_Chr8g0379761 53.939 165 30 2 12 130 28 192 3.82e-48 160
Msa0565730 MtrunA17_Chr8g0379811 70.109 184 53 2 141 322 12 195 4.93e-87 259
Msa0565730 MtrunA17_Chr8g0379811 59.551 178 24 3 1 130 1 178 6.35e-60 190
Msa0565730 MtrunA17_Chr8g0379741 78.531 177 33 4 145 319 199 372 8.34e-87 265
Msa0565730 MtrunA17_Chr8g0379741 72.072 111 30 1 194 304 8 117 5.68e-48 165
Msa0565730 MtrunA17_Chr8g0379741 56.364 165 23 4 13 130 196 358 1.47e-44 156
Msa0565730 MtrunA17_Chr8g0379741 55.357 112 14 1 54 129 6 117 6.03e-28 111
Msa0565730 MtrunA17_Chr8g0379711 69.312 189 52 4 135 322 10 193 8.05e-82 246
Msa0565730 MtrunA17_Chr8g0379711 50.303 165 34 3 12 130 14 176 8.62e-41 141
Msa0565730 MtrunA17_Chr8g0379801 51.042 288 124 5 36 318 48 323 8.77e-81 248
Msa0565730 MtrunA17_Chr8g0379801 52.632 171 32 3 6 130 143 310 5.96e-44 153
Msa0565730 MtrunA17_Chr8g0379781 72.674 172 44 2 151 322 34 202 2.53e-80 243
Msa0565730 MtrunA17_Chr8g0379781 50.303 165 34 3 12 130 23 185 8.11e-41 141
Msa0565730 MtrunA17_Chr8g0379721 62.632 190 52 3 130 319 84 254 1.91e-68 214
Msa0565730 MtrunA17_Chr8g0379721 51.079 139 38 2 22 130 102 240 1.89e-32 121
Msa0565730 MtrunA17_Chr3g0081941 32.026 153 84 3 170 321 164 297 2.32e-16 80.1
Msa0565730 MtrunA17_Chr3g0081941 33.000 100 49 1 45 126 178 277 2.53e-11 64.7
Msa0565730 MtrunA17_Chr2g0313461 31.387 137 75 2 185 321 189 306 1.88e-14 74.3
Msa0565730 MtrunA17_Chr2g0313491 32.117 137 74 2 185 321 189 306 3.06e-14 73.6
Msa0565730 MtrunA17_Chr2g0313591 30.657 137 76 2 185 321 189 306 7.57e-14 72.4
Msa0565730 MtrunA17_Chr2g0314301 30.120 166 94 4 157 321 160 304 1.17e-13 72.0
Msa0565730 MtrunA17_Chr1g0167981 33.951 162 80 5 155 313 161 298 3.23e-13 70.9
Msa0565730 MtrunA17_Chr1g0163981 31.447 159 87 4 152 309 157 294 4.34e-13 70.1
Msa0565730 MtrunA17_Chr2g0313281 35.714 98 45 1 47 126 189 286 9.01e-13 68.9
Msa0565730 MtrunA17_Chr2g0313281 31.452 124 66 2 185 308 189 293 2.92e-12 67.4
Msa0565730 MtrunA17_Chr1g0163831 30.968 155 85 4 154 307 159 292 1.32e-12 68.2
Msa0565730 MtrunA17_Chr1g0172271 34.194 155 80 6 154 307 160 293 1.34e-12 68.6
Msa0565730 MtrunA17_Chr2g0313401 39.706 68 41 0 254 321 11 78 1.54e-12 64.3
Msa0565730 MtrunA17_Chr6g0474571 31.447 159 87 4 152 309 157 294 1.60e-12 68.6
Msa0565730 MtrunA17_Chr2g0313541 31.387 137 75 3 185 321 189 306 1.83e-12 68.2
Msa0565730 MtrunA17_Chr1g0164011 34.161 161 83 7 154 313 160 298 2.45e-12 68.2
Msa0565730 MtrunA17_Chr2g0313321 31.373 153 83 4 157 308 162 293 2.77e-12 66.2
Msa0565730 MtrunA17_Chr2g0313321 34.694 98 46 1 47 126 189 286 5.26e-11 62.4
Msa0565730 MtrunA17_Chr1g0172141 30.968 155 85 4 154 307 159 292 3.18e-12 67.8
Msa0565730 MtrunA17_Chr2g0313481 30.357 168 95 4 154 320 159 305 3.89e-12 67.4
Msa0565730 MtrunA17_Chr2g0313391 29.927 137 77 3 185 321 193 310 4.16e-12 66.6
Msa0565730 MtrunA17_Chr1g0172051 30.968 155 85 4 154 307 159 292 4.33e-12 67.4
Msa0565730 MtrunA17_Chr2g0313351 29.927 137 77 3 185 321 193 310 7.17e-12 66.6
Msa0565730 MtrunA17_Chr1g0172111 27.935 247 138 10 74 307 72 291 1.09e-11 65.9
Msa0565730 MtrunA17_Chr1g0163791 32.075 159 82 5 152 307 157 292 1.11e-11 65.9
Msa0565730 MtrunA17_Chr1g0174511 32.075 159 82 5 152 307 157 292 1.35e-11 65.9
Msa0565730 MtrunA17_Chr6g0475721 26.165 279 165 10 36 301 36 286 1.39e-11 65.5
Msa0565730 MtrunA17_Chr2g0313521 30.534 131 72 3 191 321 199 310 1.98e-11 65.1
Msa0565730 MtrunA17_Chr2g0313311 29.927 137 77 3 185 321 189 306 2.63e-11 64.7
Msa0565730 MtrunA17_Chr1g0172171 27.935 247 138 10 74 307 72 291 2.63e-11 64.3
Msa0565730 MtrunA17_Chr1g0163891 32.051 156 85 5 152 307 157 291 2.78e-11 64.7
Msa0565730 MtrunA17_Chr2g0313431 29.197 137 78 3 185 321 189 306 3.07e-11 64.3
Msa0565730 MtrunA17_Chr1g0163861 31.707 123 65 2 185 307 190 293 3.11e-11 64.3
Msa0565730 MtrunA17_Chr7g0223931 29.197 137 77 3 185 321 10 126 6.04e-11 63.5
Msa0565730 MtrunA17_Chr3g0097031 27.225 191 107 6 141 321 80 248 6.20e-11 63.2
Msa0565730 MtrunA17_Chr1g0170881 30.573 157 87 4 152 307 157 292 6.53e-11 63.5
Msa0565730 MtrunA17_Chr3g0107931 27.737 137 79 3 185 321 206 322 6.54e-11 63.5
Msa0565730 MtrunA17_Chr2g0323691 29.677 155 87 4 154 307 159 292 7.22e-11 63.5
Msa0565730 MtrunA17_Chr1g0163761 31.707 123 65 2 185 307 190 293 8.61e-11 63.2
Msa0565730 MtrunA17_Chr1g0163761 27.143 210 120 6 47 238 190 384 9.34e-11 63.2
Msa0565730 MtrunA17_Chr3g0108821 27.225 191 107 7 141 321 131 299 9.16e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTAATGTCTGGCTTCT+TGG 0.206193 4_1:-66594058 None:intergenic
ACAAAGATTCAAACACTAAT+TGG 0.231039 4_1:+66596663 Msa0565730:CDS
ACAAAGATTCAAACACAAAT+TGG 0.263536 4_1:+66594075 Msa0565730:CDS
TTTATAGCAAGAACAGATTA+TGG 0.266984 4_1:+66596407 Msa0565730:intron
TTTACATTCCTAATGATGAT+AGG 0.298042 4_1:+66596460 Msa0565730:CDS
CAGTTGCCGTGACAATCTTT+TGG 0.306655 4_1:-66594032 None:intergenic
GTTATGAACCTTCATTTGTT+TGG 0.307325 4_1:-66596946 None:intergenic
ACATTACCAGCGTGGATGAT+AGG 0.323284 4_1:+66593875 Msa0565730:CDS
ATTGCTCACATCTACAAGTT+TGG 0.339784 4_1:+66596914 Msa0565730:CDS
AACCAAGGAGAAAATTTAAT+CGG 0.360137 4_1:+66596519 Msa0565730:CDS
TCAACTTGTTGCATGCGTTT+TGG 0.368476 4_1:+66594144 Msa0565730:CDS
TTGTTGTTGTGACAATCTTT+TGG 0.375012 4_1:-66596617 None:intergenic
GTTGTGGTGTGTGATCTTTA+TGG 0.377153 4_1:+66596831 Msa0565730:CDS
AGACTTGATTTAAGTAAGAT+TGG 0.378585 4_1:+66596855 Msa0565730:CDS
GTTTGAATCTTTGTAATGTC+TGG 0.380792 4_1:-66594066 None:intergenic
TCCTTAACCCTATCATCATT+AGG 0.383925 4_1:-66596468 None:intergenic
AGTAAGATTGGTATCCCCTT+TGG 0.401473 4_1:+66596867 Msa0565730:CDS
TAAGCCTTGACTCTTCTATC+TGG 0.406379 4_1:-66596552 None:intergenic
AGACTGGGATGGGTATAAAA+AGG 0.407457 4_1:+66593834 Msa0565730:CDS
CCCTTTGGTGAAGATCATAA+TGG 0.415861 4_1:+66596882 Msa0565730:CDS
ACACAAATTGGCGATGCAAT+AGG 0.417197 4_1:+66594087 Msa0565730:CDS
ACACTAATTGGTGATGCAAT+AGG 0.421541 4_1:+66596675 Msa0565730:CDS
CAGCGTGGATGATAGGGTTA+TGG 0.442516 4_1:+66593882 Msa0565730:CDS
AGACTCAATTTAGGTGAGAT+TGG 0.443190 4_1:+66595057 Msa0565730:intron
TCCTAATGATGATAGGGTTA+AGG 0.443354 4_1:+66596467 Msa0565730:CDS
GGTGAGATTGGTGTCCCCTT+TGG 0.445711 4_1:+66595069 Msa0565730:intron
CATTACCAGCGTGGATGATA+GGG 0.453439 4_1:+66593876 Msa0565730:CDS
CAGATTATGGAAGATATTGC+AGG 0.458455 4_1:+66596420 Msa0565730:CDS
TCTCTCAGCTCTTCTTATAA+CGG 0.460444 4_1:-66596583 None:intergenic
TAGGGTTATGGAACAGATCA+TGG 0.467645 4_1:+66593894 Msa0565730:CDS
CCCTTTGGTGAAGATCATAA+TGG 0.470440 4_1:+66595084 Msa0565730:CDS
TTACATTCCTAATGATGATA+GGG 0.492164 4_1:+66596461 Msa0565730:CDS
TCATTAGGAATGTAAATGTC+CGG 0.516128 4_1:-66596453 None:intergenic
GAAAATTTAATCGGATTATG+TGG 0.519822 4_1:+66596528 Msa0565730:CDS
CCATTATGATCTTCACCAAA+GGG 0.522614 4_1:-66596882 None:intergenic
CCATTATGATCTTCACCAAA+GGG 0.527365 4_1:-66595084 None:intergenic
CCAATATGAAGTCTGGAGAC+TGG 0.547576 4_1:+66593818 Msa0565730:intron
ATGAAGTCTGGAGACTGGGA+TGG 0.554835 4_1:+66593823 Msa0565730:intron
ACGCATGCAACAAGTTGATA+CGG 0.564016 4_1:-66594139 None:intergenic
CAATATGAAGTCTGGAGACT+GGG 0.573490 4_1:+66593819 Msa0565730:intron
TGAAGTCTGGAGACTGGGAT+GGG 0.585892 4_1:+66593824 Msa0565730:intron
ACCATTATGATCTTCACCAA+AGG 0.590609 4_1:-66595085 None:intergenic
ACCATTATGATCTTCACCAA+AGG 0.590609 4_1:-66596883 None:intergenic
AAAGATCACACACCACAACT+AGG 0.596884 4_1:-66596827 None:intergenic
AGATTATGGAAGATATTGCA+GGG 0.603328 4_1:+66596421 Msa0565730:CDS
GCACTAAGAGTGAGTAACCA+AGG 0.605228 4_1:+66596504 Msa0565730:CDS
ATTGTTCCAAAAGATTGTCA+CGG 0.618258 4_1:+66594026 Msa0565730:CDS
AGGGTTATGGAACAGATCAT+GGG 0.626784 4_1:+66593895 Msa0565730:CDS
TGGTCCAGATAGAAGAGTCA+AGG 0.629291 4_1:+66596548 Msa0565730:CDS
ATTACTCACATCTACAAGTG+TGG 0.632449 4_1:+66595116 Msa0565730:CDS
GCACTAAGAGTCAGAGACCA+AGG 0.658623 4_1:+66593919 Msa0565730:CDS
GCTTGAAACAGTCCTAGTTG+TGG 0.659006 4_1:+66596815 Msa0565730:CDS
ACTCACATCTACAAGTGTGG+AGG 0.664291 4_1:+66595119 Msa0565730:CDS
GATTATGGAAGATATTGCAG+GGG 0.676733 4_1:+66596422 Msa0565730:CDS
CATAACCCTATCATCCACGC+TGG 0.678978 4_1:-66593881 None:intergenic
CATTATGATCTTCACCAAAG+GGG 0.695532 4_1:-66596881 None:intergenic
CATTATGATCTTCACCAAAG+GGG 0.713138 4_1:-66595083 None:intergenic
GGACATAAACATTACCAGCG+TGG 0.735532 4_1:+66593867 Msa0565730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAATTATTCAATTTC+AGG + chr4_1:66596268-66596287 Msa0565730:intron 10.0%
!!! AATTAAGACTTTGTTTTTTT+TGG + chr4_1:66592947-66592966 Msa0565730:intron 15.0%
!!! TTTAACTTGTTTTTAACATA+TGG + chr4_1:66593060-66593079 Msa0565730:intron 15.0%
!!! TTAACTTGTTTTTAACATAT+GGG + chr4_1:66593061-66593080 Msa0565730:intron 15.0%
!!! GTTCTTAAATAATTTTTGAA+GGG + chr4_1:66593226-66593245 Msa0565730:intron 15.0%
!! TAAATAATTATGTAACTGTA+AGG + chr4_1:66593410-66593429 Msa0565730:intron 15.0%
!! AAATAATTATGTAACTGTAA+GGG + chr4_1:66593411-66593430 Msa0565730:intron 15.0%
!!! AATAATTTTAATAGTCTGTT+TGG + chr4_1:66593516-66593535 Msa0565730:intron 15.0%
!!! TTATTTAAGAACGATTTGTT+GGG - chr4_1:66593218-66593237 None:intergenic 20.0%
!! ATTATTTAAGAACGATTTGT+TGG - chr4_1:66593219-66593238 None:intergenic 20.0%
!!! CGTTCTTAAATAATTTTTGA+AGG + chr4_1:66593225-66593244 Msa0565730:intron 20.0%
!!! CAAAGTTTCATTTAGAATTT+TGG + chr4_1:66593350-66593369 Msa0565730:intron 20.0%
!!! TAGAATTTTGGATATTGATT+TGG + chr4_1:66593362-66593381 Msa0565730:intron 20.0%
!! CAGTTACATAATTATTTATC+AGG - chr4_1:66593408-66593427 None:intergenic 20.0%
!! TATTATAAACTTGTATTCCA+AGG - chr4_1:66593500-66593519 None:intergenic 20.0%
!!! AAATAATTTTAATGCCAAAC+TGG - chr4_1:66594389-66594408 None:intergenic 20.0%
!!! GTTTGGCATTAAAATTATTT+TGG + chr4_1:66594389-66594408 Msa0565730:intron 20.0%
!! AAGATCATACATTACAATTA+GGG - chr4_1:66595031-66595050 None:intergenic 20.0%
!! TAGTAAATGAATAAACAAGT+GGG - chr4_1:66595523-66595542 None:intergenic 20.0%
!! TTAGTAAATGAATAAACAAG+TGG - chr4_1:66595524-66595543 None:intergenic 20.0%
!! ATTGTATACTATTTCATCTA+AGG - chr4_1:66595713-66595732 None:intergenic 20.0%
!!! TGTATTCCAATGATTTTTTA+TGG - chr4_1:66596137-66596156 None:intergenic 20.0%
!! TTAAAATTTAGTAGTCTGTT+TGG + chr4_1:66596161-66596180 Msa0565730:intron 20.0%
!! TTTAATTATTCAATTTCAGG+TGG + chr4_1:66596271-66596290 Msa0565730:intron 20.0%
! ACAGTTATTACTATCTTAAC+TGG - chr4_1:66593006-66593025 None:intergenic 25.0%
! CAAGTTAAAATTAGACACAA+GGG - chr4_1:66593049-66593068 None:intergenic 25.0%
! ACAAGTTAAAATTAGACACA+AGG - chr4_1:66593050-66593069 None:intergenic 25.0%
!!! CTTAAATAATTTTTGAAGGG+TGG + chr4_1:66593229-66593248 Msa0565730:intron 25.0%
!!! ATTTTGGTCATTTTGACAAT+GGG + chr4_1:66593286-66593305 Msa0565730:intron 25.0%
! TCTTGTCAAATTTCTATTTC+AGG + chr4_1:66593623-66593642 Msa0565730:intron 25.0%
! AACTTTCACTAATCTAATTC+TGG + chr4_1:66593662-66593681 Msa0565730:intron 25.0%
! AAAGCATAATTGGATTATGT+GGG + chr4_1:66593944-66593963 Msa0565730:intron 25.0%
! ACAAAGATTCAAACACAAAT+TGG + chr4_1:66594075-66594094 Msa0565730:CDS 25.0%
!!! GGTTTTAGTTAAATGGATTT+AGG - chr4_1:66594316-66594335 None:intergenic 25.0%
! AAATCCATTTAACTAAAACC+CGG + chr4_1:66594316-66594335 Msa0565730:intron 25.0%
!!! TGGCATTAAAATTATTTTGG+TGG + chr4_1:66594392-66594411 Msa0565730:intron 25.0%
! ATTACGGTTATTAATGAATG+AGG - chr4_1:66594509-66594528 None:intergenic 25.0%
! AGAGGATGAGAATTATATTA+CGG - chr4_1:66594525-66594544 None:intergenic 25.0%
! GAAAGGATTCTTTCTATTAT+CGG - chr4_1:66594709-66594728 None:intergenic 25.0%
!! ATATCCAACCCATTTAAAAT+GGG + chr4_1:66594913-66594932 Msa0565730:intron 25.0%
! GTAACCATTTACAAAAAATC+CGG + chr4_1:66594943-66594962 Msa0565730:intron 25.0%
!!! ATATCCGGATTTTTTGTAAA+TGG - chr4_1:66594950-66594969 None:intergenic 25.0%
!!! AAAAATCCGGATATTTTAAG+TGG + chr4_1:66594956-66594975 Msa0565730:intron 25.0%
! AGATCATACATTACAATTAG+GGG - chr4_1:66595030-66595049 None:intergenic 25.0%
! GAAGATCATACATTACAATT+AGG - chr4_1:66595032-66595051 None:intergenic 25.0%
! ATTGTAATGTATGATCTTCA+TGG + chr4_1:66595033-66595052 Msa0565730:intron 25.0%
! TTGTAATGTATGATCTTCAT+GGG + chr4_1:66595034-66595053 Msa0565730:intron 25.0%
!! TCTTTCATTATTTTCATCTG+TGG + chr4_1:66595658-66595677 Msa0565730:intron 25.0%
! TATACTATTTCATCTAAGGA+AGG - chr4_1:66595709-66595728 None:intergenic 25.0%
! CCAATTATTCTATATCCTAA+CGG + chr4_1:66596026-66596045 Msa0565730:intron 25.0%
!! TGTGGAATCTCAATATTTTA+GGG + chr4_1:66596103-66596122 Msa0565730:intron 25.0%
! TGCTTTCCATAAAAAATCAT+TGG + chr4_1:66596128-66596147 Msa0565730:intron 25.0%
! TTTATAGCAAGAACAGATTA+TGG + chr4_1:66596407-66596426 Msa0565730:intron 25.0%
! TTTACATTCCTAATGATGAT+AGG + chr4_1:66596460-66596479 Msa0565730:CDS 25.0%
! TTACATTCCTAATGATGATA+GGG + chr4_1:66596461-66596480 Msa0565730:CDS 25.0%
! AACCAAGGAGAAAATTTAAT+CGG + chr4_1:66596519-66596538 Msa0565730:CDS 25.0%
! GAAAATTTAATCGGATTATG+TGG + chr4_1:66596528-66596547 Msa0565730:CDS 25.0%
! ACAAAGATTCAAACACTAAT+TGG + chr4_1:66596663-66596682 Msa0565730:CDS 25.0%
! AGACTTGATTTAAGTAAGAT+TGG + chr4_1:66596855-66596874 Msa0565730:CDS 25.0%
!! GATTTTATCCAAACAAATGA+AGG + chr4_1:66596938-66596957 Msa0565730:CDS 25.0%
TCATTTGGAAAACACAATGT+TGG + chr4_1:66592885-66592904 Msa0565730:intron 30.0%
! TTTTTAACATATGGGTAGCT+AGG + chr4_1:66593069-66593088 Msa0565730:intron 30.0%
ATCACATAAATGGAGGAAAT+CGG - chr4_1:66593137-66593156 None:intergenic 30.0%
AAACTAGATCACATAAATGG+AGG - chr4_1:66593144-66593163 None:intergenic 30.0%
TCCATTTATGTGATCTAGTT+TGG + chr4_1:66593143-66593162 Msa0565730:intron 30.0%
! CCATTTATGTGATCTAGTTT+GGG + chr4_1:66593144-66593163 Msa0565730:intron 30.0%
! CATTTATGTGATCTAGTTTG+GGG + chr4_1:66593145-66593164 Msa0565730:intron 30.0%
GTCAAAATGACCAAAATCTA+AGG - chr4_1:66593283-66593302 None:intergenic 30.0%
!! GATTTTGGTCATTTTGACAA+TGG + chr4_1:66593285-66593304 Msa0565730:intron 30.0%
! CAACATTAAAGCATTAAGCA+AGG - chr4_1:66593312-66593331 None:intergenic 30.0%
TGCTTTAATGTTGTAATTGC+TGG + chr4_1:66593319-66593338 Msa0565730:intron 30.0%
! ATTTTCCTGTAGAATTTCCT+TGG + chr4_1:66593480-66593499 Msa0565730:intron 30.0%
!!! GGTATAAAAAGGCTAGTTTT+GGG + chr4_1:66593845-66593864 Msa0565730:CDS 30.0%
!!! GTATAAAAAGGCTAGTTTTG+GGG + chr4_1:66593846-66593865 Msa0565730:CDS 30.0%
! GAAAGCATAATTGGATTATG+TGG + chr4_1:66593943-66593962 Msa0565730:intron 30.0%
ATTGTTCCAAAAGATTGTCA+CGG + chr4_1:66594026-66594045 Msa0565730:CDS 30.0%
GTTTGAATCTTTGTAATGTC+TGG - chr4_1:66594069-66594088 None:intergenic 30.0%
AACAGTCCTGATTGTAATTA+GGG + chr4_1:66594233-66594252 Msa0565730:intron 30.0%
! TATTTGGTTTCAGTTTGGTT+TGG - chr4_1:66594276-66594295 None:intergenic 30.0%
ACCAAACTGAAACCAAATAT+AGG + chr4_1:66594277-66594296 Msa0565730:intron 30.0%
! ACCTATATTTGGTTTCAGTT+TGG - chr4_1:66594281-66594300 None:intergenic 30.0%
!!! AAAACCGGGTTTTAGTTAAA+TGG - chr4_1:66594323-66594342 None:intergenic 30.0%
!! TTTTTCTGGAAAAAGCAGTT+TGG + chr4_1:66594339-66594358 Msa0565730:intron 30.0%
CAATGAAAGGAGTAATTGTA+CGG - chr4_1:66594444-66594463 None:intergenic 30.0%
GTTATTAATGAATGAGGAAG+AGG - chr4_1:66594503-66594522 None:intergenic 30.0%
! TGAAAGGTTTGGTTTCTAAT+TGG + chr4_1:66594821-66594840 Msa0565730:intron 30.0%
! GAAAGGTTTGGTTTCTAATT+GGG + chr4_1:66594822-66594841 Msa0565730:intron 30.0%
!! ATCCGGTTTTTAACTAGATA+TGG - chr4_1:66594873-66594892 None:intergenic 30.0%
GATATCCAACCCATTTAAAA+TGG + chr4_1:66594912-66594931 Msa0565730:intron 30.0%
!! ATTTTAAGTGGATCTGGATA+TGG + chr4_1:66594968-66594987 Msa0565730:intron 30.0%
!! GGTTTTATCCAATCAAATGA+AGG + chr4_1:66595140-66595159 Msa0565730:intron 30.0%
TTTATGAGCCTTCATTTGAT+TGG - chr4_1:66595151-66595170 None:intergenic 30.0%
TTCCATATGATGTGCATATT+TGG - chr4_1:66595251-66595270 None:intergenic 30.0%
AAACTCTAATCTCTCTAACA+CGG - chr4_1:66595278-66595297 None:intergenic 30.0%
TCTTGTAAATAACGTCATCT+GGG + chr4_1:66595451-66595470 Msa0565730:intron 30.0%
!! AATAAACAAGTGGGCTAAAA+TGG - chr4_1:66595514-66595533 None:intergenic 30.0%
ATATGATAATCTTGCACACA+AGG + chr4_1:66595735-66595754 Msa0565730:intron 30.0%
ATTCAAACAAGCTTACTAAG+TGG + chr4_1:66595829-66595848 Msa0565730:intron 30.0%
ATCAAAGTAAACTCACGTTT+AGG + chr4_1:66595872-66595891 Msa0565730:intron 30.0%
GAAGTTACTTATAGCATGTT+TGG - chr4_1:66595977-66595996 None:intergenic 30.0%
CCGTTAGGATATAGAATAAT+TGG - chr4_1:66596029-66596048 None:intergenic 30.0%
CAATTGCACAATTGTTTATC+AGG - chr4_1:66596064-66596083 None:intergenic 30.0%
AAACAATTGTGCAATTGTAG+AGG + chr4_1:66596067-66596086 Msa0565730:intron 30.0%
! GTGTGGAATCTCAATATTTT+AGG + chr4_1:66596102-66596121 Msa0565730:intron 30.0%
!! GTGGAATCTCAATATTTTAG+GGG + chr4_1:66596104-66596123 Msa0565730:intron 30.0%
! AATTATTCAATTTCAGGTGG+AGG + chr4_1:66596274-66596293 Msa0565730:intron 30.0%
AGATTATGGAAGATATTGCA+GGG + chr4_1:66596421-66596440 Msa0565730:CDS 30.0%
TCATTAGGAATGTAAATGTC+CGG - chr4_1:66596456-66596475 None:intergenic 30.0%
! ATCCGATTAAATTTTCTCCT+TGG - chr4_1:66596524-66596543 None:intergenic 30.0%
!! TTGTTGTTGTGACAATCTTT+TGG - chr4_1:66596620-66596639 None:intergenic 30.0%
GTTATGAACCTTCATTTGTT+TGG - chr4_1:66596949-66596968 None:intergenic 30.0%
ATGTTGGAGAGATTAGAGAT+TGG + chr4_1:66592901-66592920 Msa0565730:intron 35.0%
CCCAAACTAGATCACATAAA+TGG - chr4_1:66593147-66593166 None:intergenic 35.0%
ACAAAGTTAAATATACCCCG+TGG - chr4_1:66593194-66593213 None:intergenic 35.0%
!! ATTTTTGAAGGGTGGATATG+TGG + chr4_1:66593237-66593256 Msa0565730:intron 35.0%
!! TTTTTGAAGGGTGGATATGT+GGG + chr4_1:66593238-66593257 Msa0565730:intron 35.0%
! GCACTTAACTCCTTAGATTT+TGG + chr4_1:66593270-66593289 Msa0565730:intron 35.0%
!! GGATATTGATTTGGAGAGTA+AGG + chr4_1:66593371-66593390 Msa0565730:intron 35.0%
! AAGGGCTTTTGTACTATGTT+TGG + chr4_1:66593429-66593448 Msa0565730:intron 35.0%
! AGGGCTTTTGTACTATGTTT+GGG + chr4_1:66593430-66593449 Msa0565730:intron 35.0%
GTATTCCAAGGAAATTCTAC+AGG - chr4_1:66593488-66593507 None:intergenic 35.0%
TCTCATTATATGCCATGGAT+AGG + chr4_1:66593694-66593713 Msa0565730:intron 35.0%
!!! GGGTATAAAAAGGCTAGTTT+TGG + chr4_1:66593844-66593863 Msa0565730:CDS 35.0%
ATCCAATTATGCTTTCACCT+TGG - chr4_1:66593939-66593958 None:intergenic 35.0%
!! GAAGCTTTGACTCTTTTATC+TGG - chr4_1:66593970-66593989 None:intergenic 35.0%
CATCTTAGCACAAAGAAGAT+GGG - chr4_1:66594202-66594221 None:intergenic 35.0%
TCATCTTAGCACAAAGAAGA+TGG - chr4_1:66594203-66594222 None:intergenic 35.0%
GAACAGTCCTGATTGTAATT+AGG + chr4_1:66594232-66594251 Msa0565730:intron 35.0%
ACAGTCCTGATTGTAATTAG+GGG + chr4_1:66594234-66594253 Msa0565730:intron 35.0%
CTGAAACCAAATATAGGTTC+TGG + chr4_1:66594283-66594302 Msa0565730:intron 35.0%
! AACCAAATATAGGTTCTGGT+TGG + chr4_1:66594287-66594306 Msa0565730:intron 35.0%
! ACCAAATATAGGTTCTGGTT+GGG + chr4_1:66594288-66594307 Msa0565730:intron 35.0%
! TAACTAAAACCCGGTTTTTC+TGG + chr4_1:66594325-66594344 Msa0565730:intron 35.0%
!!! ACTGCTTTTTCCAGAAAAAC+CGG - chr4_1:66594338-66594357 None:intergenic 35.0%
TGGTGATAGAAGTCAATGAA+AGG - chr4_1:66594457-66594476 None:intergenic 35.0%
! GATGTTTTCGATATCATCAG+CGG - chr4_1:66594635-66594654 None:intergenic 35.0%
GATGCAAACATAATCTCCAA+AGG + chr4_1:66594771-66594790 Msa0565730:intron 35.0%
TGAGAGCAAGAAGAAGAAAA+TGG + chr4_1:66594847-66594866 Msa0565730:intron 35.0%
GGCCATATCTAGTTAAAAAC+CGG + chr4_1:66594868-66594887 Msa0565730:intron 35.0%
AACCAATTAAGACTCAGATC+CGG - chr4_1:66594890-66594909 None:intergenic 35.0%
GATCTGAGTCTTAATTGGTT+TGG + chr4_1:66594890-66594909 Msa0565730:intron 35.0%
! CCAACCAACCCATTTTAAAT+GGG - chr4_1:66594924-66594943 None:intergenic 35.0%
! ACCAACCAACCCATTTTAAA+TGG - chr4_1:66594925-66594944 None:intergenic 35.0%
CCAGATCCACTTAAAATATC+CGG - chr4_1:66594965-66594984 None:intergenic 35.0%
AGACTCAATTTAGGTGAGAT+TGG + chr4_1:66595057-66595076 Msa0565730:intron 35.0%
CATTATGATCTTCACCAAAG+GGG - chr4_1:66595086-66595105 None:intergenic 35.0%
CCATTATGATCTTCACCAAA+GGG - chr4_1:66595087-66595106 None:intergenic 35.0%
ACCATTATGATCTTCACCAA+AGG - chr4_1:66595088-66595107 None:intergenic 35.0%
ATTACTCACATCTACAAGTG+TGG + chr4_1:66595116-66595135 Msa0565730:CDS 35.0%
GTCCAAATATGCACATCATA+TGG + chr4_1:66595246-66595265 Msa0565730:intron 35.0%
GTCTTGTAAATAACGTCATC+TGG + chr4_1:66595450-66595469 Msa0565730:intron 35.0%
AATGAAGCTTTCTCACTTCT+TGG + chr4_1:66595564-66595583 Msa0565730:intron 35.0%
ATGAAGCTTTCTCACTTCTT+GGG + chr4_1:66595565-66595584 Msa0565730:intron 35.0%
TACTTCGTTAGCATACACTT+AGG + chr4_1:66595613-66595632 Msa0565730:intron 35.0%
! TTTCATCTGTGGTTCTGTAA+AGG + chr4_1:66595669-66595688 Msa0565730:intron 35.0%
! TTCATCTGTGGTTCTGTAAA+GGG + chr4_1:66595670-66595689 Msa0565730:intron 35.0%
AGAATATGCAGCTTGATGTT+TGG + chr4_1:66596244-66596263 Msa0565730:intron 35.0%
ACCTTTCCCTAATCTAATTG+TGG + chr4_1:66596308-66596327 Msa0565730:intron 35.0%
ACCACAATTAGATTAGGGAA+AGG - chr4_1:66596312-66596331 None:intergenic 35.0%
CAGATTATGGAAGATATTGC+AGG + chr4_1:66596420-66596439 Msa0565730:CDS 35.0%
GATTATGGAAGATATTGCAG+GGG + chr4_1:66596422-66596441 Msa0565730:CDS 35.0%
TCCTAATGATGATAGGGTTA+AGG + chr4_1:66596467-66596486 Msa0565730:CDS 35.0%
TCCTTAACCCTATCATCATT+AGG - chr4_1:66596471-66596490 None:intergenic 35.0%
TCTCTCAGCTCTTCTTATAA+CGG - chr4_1:66596586-66596605 None:intergenic 35.0%
!! ACACTAATTGGTGATGCAAT+AGG + chr4_1:66596675-66596694 Msa0565730:CDS 35.0%
CATTATGATCTTCACCAAAG+GGG - chr4_1:66595086-66595105 None:intergenic 35.0%
CCATTATGATCTTCACCAAA+GGG - chr4_1:66595087-66595106 None:intergenic 35.0%
ACCATTATGATCTTCACCAA+AGG - chr4_1:66595088-66595107 None:intergenic 35.0%
ATTGCTCACATCTACAAGTT+TGG + chr4_1:66596914-66596933 Msa0565730:CDS 35.0%
! TAGAGTGTTTGAAGCAGAGA+TGG + chr4_1:66592835-66592854 Msa0565730:intron 40.0%
TTCCAAATGATGTGCATGCT+TGG - chr4_1:66592875-66592894 None:intergenic 40.0%
TTAACATATGGGTAGCTAGG+TGG + chr4_1:66593072-66593091 Msa0565730:intron 40.0%
GGAGGAGTAGTAATATACCA+CGG + chr4_1:66593174-66593193 Msa0565730:intron 40.0%
GAGGAGTAGTAATATACCAC+GGG + chr4_1:66593175-66593194 Msa0565730:intron 40.0%
AGGAGTAGTAATATACCACG+GGG + chr4_1:66593176-66593195 Msa0565730:intron 40.0%
GCAACTCTCATTATATGCCA+TGG + chr4_1:66593689-66593708 Msa0565730:intron 40.0%
GGAGCGAAAAAAAGAACAGA+TGG + chr4_1:66593734-66593753 Msa0565730:intron 40.0%
TCTTGTGCCAATATGAAGTC+TGG + chr4_1:66593811-66593830 Msa0565730:intron 40.0%
CAATATGAAGTCTGGAGACT+GGG + chr4_1:66593819-66593838 Msa0565730:intron 40.0%
AGACTGGGATGGGTATAAAA+AGG + chr4_1:66593834-66593853 Msa0565730:CDS 40.0%
TAGGGTTATGGAACAGATCA+TGG + chr4_1:66593894-66593913 Msa0565730:CDS 40.0%
AGGGTTATGGAACAGATCAT+GGG + chr4_1:66593895-66593914 Msa0565730:CDS 40.0%
! GACCAAGGTGAAAGCATAAT+TGG + chr4_1:66593934-66593953 Msa0565730:intron 40.0%
! CTTTGTAATGTCTGGCTTCT+TGG - chr4_1:66594061-66594080 None:intergenic 40.0%
ACACAAATTGGCGATGCAAT+AGG + chr4_1:66594087-66594106 Msa0565730:CDS 40.0%
!! ACGCATGCAACAAGTTGATA+CGG - chr4_1:66594142-66594161 None:intergenic 40.0%
!!! TCAACTTGTTGCATGCGTTT+TGG + chr4_1:66594144-66594163 Msa0565730:CDS 40.0%
! ATTGTAATTAGGGGTGTGCA+TGG + chr4_1:66594243-66594262 Msa0565730:intron 40.0%
ACCCAACCAGAACCTATATT+TGG - chr4_1:66594292-66594311 None:intergenic 40.0%
!!! CTGCTTTTTCCAGAAAAACC+GGG - chr4_1:66594337-66594356 None:intergenic 40.0%
TGGAAAAAGCAGTTTGGATC+TGG + chr4_1:66594345-66594364 Msa0565730:intron 40.0%
GGAAAAAGCAGTTTGGATCT+GGG + chr4_1:66594346-66594365 Msa0565730:intron 40.0%
! AAACCGGTTCAAATCCAGTT+TGG + chr4_1:66594372-66594391 Msa0565730:intron 40.0%
ATGCCAAACTGGATTTGAAC+CGG - chr4_1:66594378-66594397 None:intergenic 40.0%
AGTAATTGTACGGTGGTGAT+GGG - chr4_1:66594434-66594453 None:intergenic 40.0%
TGAAAGGAGTAATTGTACGG+TGG - chr4_1:66594441-66594460 None:intergenic 40.0%
AACACGTGGAAGAAGATGAT+TGG - chr4_1:66594477-66594496 None:intergenic 40.0%
GCAAACATAATCTCCAAAGG+TGG + chr4_1:66594774-66594793 Msa0565730:intron 40.0%
AACCGGATCTGAGTCTTAAT+TGG + chr4_1:66594885-66594904 Msa0565730:intron 40.0%
! CCAACCCATTTTAAATGGGT+TGG - chr4_1:66594920-66594939 None:intergenic 40.0%
! CCAACCCATTTAAAATGGGT+TGG + chr4_1:66594917-66594936 Msa0565730:intron 40.0%
!! CCCATTTAAAATGGGTTGGT+TGG + chr4_1:66594921-66594940 Msa0565730:intron 40.0%
!! CCGGATATTTTAAGTGGATC+TGG + chr4_1:66594962-66594981 Msa0565730:intron 40.0%
AGTGGATCTGGATATGGTTA+TGG + chr4_1:66594974-66594993 Msa0565730:intron 40.0%
GTGGATCTGGATATGGTTAT+GGG + chr4_1:66594975-66594994 Msa0565730:intron 40.0%
TCTGGATATGGTTATGGGTT+TGG + chr4_1:66594980-66594999 Msa0565730:intron 40.0%
CTGGATATGGTTATGGGTTT+GGG + chr4_1:66594981-66595000 Msa0565730:intron 40.0%
CTTCATGGGAGACTCAATTT+AGG + chr4_1:66595048-66595067 Msa0565730:intron 40.0%
CCCTTTGGTGAAGATCATAA+TGG + chr4_1:66595084-66595103 Msa0565730:CDS 40.0%
TCTGCTTCAAACACTCTAGT+TGG - chr4_1:66595209-66595228 None:intergenic 40.0%
! AGTTTGACAAGTGCTGTGTT+GGG + chr4_1:66595293-66595312 Msa0565730:intron 40.0%
!! CAAGTGGGCTAAAATGGAAA+CGG - chr4_1:66595508-66595527 None:intergenic 40.0%
! GTTAGCATACACTTAGGTTG+TGG + chr4_1:66595619-66595638 Msa0565730:intron 40.0%
AGAGAATGCTCTAGTGTGAA+AGG - chr4_1:66595792-66595811 None:intergenic 40.0%
GAAGCTACAAAATGTAGCAG+TGG - chr4_1:66595898-66595917 None:intergenic 40.0%
AGGTCAAAACATTGTCCGTT+AGG - chr4_1:66596044-66596063 None:intergenic 40.0%
! AGAGGCTTTTGTACTATGTG+TGG + chr4_1:66596085-66596104 Msa0565730:intron 40.0%
GACGCACCACAATTAGATTA+GGG - chr4_1:66596317-66596336 None:intergenic 40.0%
TGACGCACCACAATTAGATT+AGG - chr4_1:66596318-66596337 None:intergenic 40.0%
TGTACGGTAGGCTGAAAAAA+AGG + chr4_1:66596373-66596392 Msa0565730:intron 40.0%
GTACGGTAGGCTGAAAAAAA+GGG + chr4_1:66596374-66596393 Msa0565730:intron 40.0%
TACGGTAGGCTGAAAAAAAG+GGG + chr4_1:66596375-66596394 Msa0565730:intron 40.0%
TAGGCTGAAAAAAAGGGGTT+TGG + chr4_1:66596380-66596399 Msa0565730:intron 40.0%
!! TATTGCAGGGGCTTATTTTC+CGG + chr4_1:66596434-66596453 Msa0565730:CDS 40.0%
TAAGCCTTGACTCTTCTATC+TGG - chr4_1:66596555-66596574 None:intergenic 40.0%
AAAGATCACACACCACAACT+AGG - chr4_1:66596830-66596849 None:intergenic 40.0%
GTTGTGGTGTGTGATCTTTA+TGG + chr4_1:66596831-66596850 Msa0565730:CDS 40.0%
AGTAAGATTGGTATCCCCTT+TGG + chr4_1:66596867-66596886 Msa0565730:CDS 40.0%
CCCTTTGGTGAAGATCATAA+TGG + chr4_1:66595084-66595103 Msa0565730:CDS 40.0%
GTCCAAGCATGCACATCATT+TGG + chr4_1:66592870-66592889 Msa0565730:intron 45.0%
GAGATTGGCAAGTGCTTTGT+AGG + chr4_1:66592916-66592935 Msa0565730:intron 45.0%
! TGATCTAGTTTGGGGCTGTT+TGG + chr4_1:66593153-66593172 Msa0565730:intron 45.0%
! TTTTCGCTCCACCATTCATG+AGG - chr4_1:66593724-66593743 None:intergenic 45.0%
CCAGTCTCCAGACTTCATAT+TGG - chr4_1:66593821-66593840 None:intergenic 45.0%
CCAATATGAAGTCTGGAGAC+TGG + chr4_1:66593818-66593837 Msa0565730:intron 45.0%
GGACATAAACATTACCAGCG+TGG + chr4_1:66593867-66593886 Msa0565730:CDS 45.0%
ACATTACCAGCGTGGATGAT+AGG + chr4_1:66593875-66593894 Msa0565730:CDS 45.0%
CATTACCAGCGTGGATGATA+GGG + chr4_1:66593876-66593895 Msa0565730:CDS 45.0%
! CAGTTGCCGTGACAATCTTT+TGG - chr4_1:66594035-66594054 None:intergenic 45.0%
GCACACCCCTAATTACAATC+AGG - chr4_1:66594242-66594261 None:intergenic 45.0%
GTTTGGATCTGGGTCAAAAC+CGG + chr4_1:66594356-66594375 Msa0565730:intron 45.0%
! GTAATTGTACGGTGGTGATG+GGG - chr4_1:66594433-66594452 None:intergenic 45.0%
GAGTAATTGTACGGTGGTGA+TGG - chr4_1:66594435-66594454 None:intergenic 45.0%
TTTCGCCGGAGAGATTTAAC+CGG - chr4_1:66594564-66594583 None:intergenic 45.0%
! GTTTTCGATATCATCAGCGG+CGG - chr4_1:66594632-66594651 None:intergenic 45.0%
CATCAGACTCCCTATTGATG+TGG + chr4_1:66594651-66594670 Msa0565730:intron 45.0%
GAGTTGAGTGTTAGATACGC+CGG - chr4_1:66594687-66594706 None:intergenic 45.0%
CAAGAACATGCACTGGAGAA+AGG - chr4_1:66594726-66594745 None:intergenic 45.0%
CTCCAGTGCATGTTCTTGTT+CGG + chr4_1:66594728-66594747 Msa0565730:intron 45.0%
TTCCGAACAAGAACATGCAC+TGG - chr4_1:66594733-66594752 None:intergenic 45.0%
GCATGTTCTTGTTCGGAACT+TGG + chr4_1:66594735-66594754 Msa0565730:intron 45.0%
TGTTCTTGTTCGGAACTTGG+TGG + chr4_1:66594738-66594757 Msa0565730:intron 45.0%
!! TGTGCATCATAACCGGTTTG+AGG - chr4_1:66595007-66595026 None:intergenic 45.0%
! TTAGGGGTGTGCATCATAAC+CGG - chr4_1:66595014-66595033 None:intergenic 45.0%
ACTCACATCTACAAGTGTGG+AGG + chr4_1:66595119-66595138 Msa0565730:CDS 45.0%
! GAGTTTGACAAGTGCTGTGT+TGG + chr4_1:66595292-66595311 Msa0565730:intron 45.0%
! GTTTGACAAGTGCTGTGTTG+GGG + chr4_1:66595294-66595313 Msa0565730:intron 45.0%
!! GAAACGGTGTCGTTTAAGTG+AGG - chr4_1:66595492-66595511 None:intergenic 45.0%
! ATCTGTGGTTCTGTAAAGGG+AGG + chr4_1:66595673-66595692 Msa0565730:intron 45.0%
! TCTGTGGTTCTGTAAAGGGA+GGG + chr4_1:66595674-66595693 Msa0565730:intron 45.0%
AATCTTGCACACAAGGCTGA+AGG + chr4_1:66595742-66595761 Msa0565730:intron 45.0%
ATTTCACGTCGCACATGCTT+TGG + chr4_1:66595922-66595941 Msa0565730:intron 45.0%
TTTCACGTCGCACATGCTTT+GGG + chr4_1:66595923-66595942 Msa0565730:intron 45.0%
GATACCCTGTGTCTTGTGTA+CGG + chr4_1:66596357-66596376 Msa0565730:intron 45.0%
GCACTAAGAGTGAGTAACCA+AGG + chr4_1:66596504-66596523 Msa0565730:CDS 45.0%
TGGTCCAGATAGAAGAGTCA+AGG + chr4_1:66596548-66596567 Msa0565730:CDS 45.0%
GCTTGAAACAGTCCTAGTTG+TGG + chr4_1:66596815-66596834 Msa0565730:CDS 45.0%
ATGGGTAGCTAGGTGGCTAA+TGG + chr4_1:66593079-66593098 Msa0565730:intron 50.0%
! TCTAGTTTGGGGCTGTTTGG+AGG + chr4_1:66593156-66593175 Msa0565730:intron 50.0%
TCATGAGGCGAACCTATCCA+TGG - chr4_1:66593709-66593728 None:intergenic 50.0%
GGATAGGTTCGCCTCATGAA+TGG + chr4_1:66593710-66593729 Msa0565730:intron 50.0%
TAGGTTCGCCTCATGAATGG+TGG + chr4_1:66593713-66593732 Msa0565730:intron 50.0%
ATGAAGTCTGGAGACTGGGA+TGG + chr4_1:66593823-66593842 Msa0565730:intron 50.0%
TGAAGTCTGGAGACTGGGAT+GGG + chr4_1:66593824-66593843 Msa0565730:intron 50.0%
CATAACCCTATCATCCACGC+TGG - chr4_1:66593884-66593903 None:intergenic 50.0%
CAGCGTGGATGATAGGGTTA+TGG + chr4_1:66593882-66593901 Msa0565730:CDS 50.0%
GCACTAAGAGTCAGAGACCA+AGG + chr4_1:66593919-66593938 Msa0565730:CDS 50.0%
TGAGGAAGAGGACAAACACG+TGG - chr4_1:66594491-66594510 None:intergenic 50.0%
GACGGAGGACCACATCAATA+GGG - chr4_1:66594663-66594682 None:intergenic 50.0%
TGACGGAGGACCACATCAAT+AGG - chr4_1:66594664-66594683 None:intergenic 50.0%
AGTGTTAGATACGCCGGTGA+CGG - chr4_1:66594681-66594700 None:intergenic 50.0%
! TCTTGTTCGGAACTTGGTGG+AGG + chr4_1:66594741-66594760 Msa0565730:intron 50.0%
GGTTGCGACGATGGTTGTTA+CGG + chr4_1:66594795-66594814 Msa0565730:intron 50.0%
ATGGTTGTTACGGCGGTGAA+AGG + chr4_1:66594805-66594824 Msa0565730:intron 50.0%
TGTTACGGCGGTGAAAGGTT+TGG + chr4_1:66594810-66594829 Msa0565730:intron 50.0%
TATGGGTTTGGGCCTCAAAC+CGG + chr4_1:66594992-66595011 Msa0565730:intron 50.0%
AGGAGAGTGAGTGCTCCTTT+GGG - chr4_1:66595772-66595791 None:intergenic 50.0%
AAGGAGAGTGAGTGCTCCTT+TGG - chr4_1:66595773-66595792 None:intergenic 50.0%
GGTGCGTCAACTCTCATCAT+AGG + chr4_1:66596329-66596348 Msa0565730:intron 50.0%
! CACAAGACACAGGGTATCTG+AGG - chr4_1:66596355-66596374 None:intergenic 50.0%
CCTACCGTACACAAGACACA+GGG - chr4_1:66596364-66596383 None:intergenic 50.0%
!! TACGGTGGTGATGGGGAAAC+AGG - chr4_1:66594426-66594445 None:intergenic 55.0%
TCTTCTCACTTCACCGTCGC+CGG + chr4_1:66594542-66594561 Msa0565730:intron 55.0%
CGGAGAGATTTAACCGGCGA+CGG - chr4_1:66594558-66594577 None:intergenic 55.0%
! CGTCGCCGGTTAAATCTCTC+CGG + chr4_1:66594556-66594575 Msa0565730:intron 55.0%
TAATCTCGTCGAGCCAGCTG+AGG - chr4_1:66594609-66594628 None:intergenic 55.0%
TTGATGTGGTCCTCCGTCAC+CGG + chr4_1:66594665-66594684 Msa0565730:intron 55.0%
TCCAAAGGTGGTTGCGACGA+TGG + chr4_1:66594786-66594805 Msa0565730:intron 55.0%
ACCATCGTCGCAACCACCTT+TGG - chr4_1:66594790-66594809 None:intergenic 55.0%
TGCGACGATGGTTGTTACGG+CGG + chr4_1:66594798-66594817 Msa0565730:intron 55.0%
! GGTGAGATTGGTGTCCCCTT+TGG + chr4_1:66595069-66595088 Msa0565730:intron 55.0%
! GTGGTTCTGTAAAGGGAGGG+AGG + chr4_1:66595677-66595696 Msa0565730:intron 55.0%
AAGGCTGAAGGCTACCCCAA+AGG + chr4_1:66595754-66595773 Msa0565730:intron 55.0%
GGAGAGTGAGTGCTCCTTTG+GGG - chr4_1:66595771-66595790 None:intergenic 55.0%
CCCTGTGTCTTGTGTACGGT+AGG + chr4_1:66596361-66596380 Msa0565730:intron 55.0%
GCCTACCGTACACAAGACAC+AGG - chr4_1:66596365-66596384 None:intergenic 55.0%
GGCGACGGTGAAGTGAGAAG+AGG - chr4_1:66594543-66594562 None:intergenic 60.0%
!! TCCAGAGGCGTTGCTTTCGC+CGG - chr4_1:66594578-66594597 None:intergenic 60.0%
! GTTAGATACGCCGGTGACGG+AGG - chr4_1:66594678-66594697 None:intergenic 60.0%
TCCGGCGAAAGCAACGCCTC+TGG + chr4_1:66594574-66594593 Msa0565730:intron 65.0%
GCTGAGGTGCGGTGATCCAG+AGG - chr4_1:66594593-66594612 None:intergenic 65.0%
CTGGATCACCGCACCTCAGC+TGG + chr4_1:66594593-66594612 Msa0565730:intron 65.0%
TCGTCGAGCCAGCTGAGGTG+CGG - chr4_1:66594604-66594623 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66592794 66596992 66592794 ID=Msa0565730;Name=Msa0565730
chr4_1 mRNA 66592794 66596992 66592794 ID=Msa0565730-mRNA-1;Parent=Msa0565730;Name=Msa0565730-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0|0|5|0|322
chr4_1 exon 66592794 66592799 66592794 ID=Msa0565730-mRNA-1:exon:21723;Parent=Msa0565730-mRNA-1
chr4_1 exon 66593829 66593940 66593829 ID=Msa0565730-mRNA-1:exon:21724;Parent=Msa0565730-mRNA-1
chr4_1 exon 66593971 66594171 66593971 ID=Msa0565730-mRNA-1:exon:21725;Parent=Msa0565730-mRNA-1
chr4_1 exon 66595070 66595140 66595070 ID=Msa0565730-mRNA-1:exon:21726;Parent=Msa0565730-mRNA-1
chr4_1 exon 66596414 66596992 66596414 ID=Msa0565730-mRNA-1:exon:21727;Parent=Msa0565730-mRNA-1
chr4_1 CDS 66592794 66592799 66592794 ID=Msa0565730-mRNA-1:cds;Parent=Msa0565730-mRNA-1
chr4_1 CDS 66593829 66593940 66593829 ID=Msa0565730-mRNA-1:cds;Parent=Msa0565730-mRNA-1
chr4_1 CDS 66593971 66594171 66593971 ID=Msa0565730-mRNA-1:cds;Parent=Msa0565730-mRNA-1
chr4_1 CDS 66595070 66595140 66595070 ID=Msa0565730-mRNA-1:cds;Parent=Msa0565730-mRNA-1
chr4_1 CDS 66596414 66596992 66596414 ID=Msa0565730-mRNA-1:cds;Parent=Msa0565730-mRNA-1
Gene Sequence

>Msa0565730

ATGAAGTCTGGAGACTGGGATGGGTATAAAAAGGCTAGTTTTGGGGACATAAACATTACCAGCGTGGATGATAGGGTTATGGAACAGATCATGGGTGCACTAAGAGTCAGAGACCAAGATAAAAGAGTCAAAGCTTCTGTAAAAACAACTATAAGAAGATCTGAGAGAGATCAATTGTTCCAAAAGATTGTCACGGCAACTGTGACCAAGAAGCCAGACATTACAAAGATTCAAACACAAATTGGCGATGCAATAGGTCTCAATTTTAATGATAAGATGAATGTAGCCGTATCAACTTGTTGCATGCGTTTTGGTAATAGTGAGATTGGTGTCCCCTTTGGTGAAGATCATAATGGTTGCAAGATATTACTCACATCTACAAGTGTGGAGCAAGAACAGATTATGGAAGATATTGCAGGGGCTTATTTTCCGGACATTTACATTCCTAATGATGATAGGGTTAAGGAACAAATTATGAGTGCACTAAGAGTGAGTAACCAAGGAGAAAATTTAATCGGATTATGTGGTCCAGATAGAAGAGTCAAGGCTTATGTGAAAACCGTTATAAGAAGAGCTGAGAGAGATCAATTGTTCCAAAAGATTGTCACAACAACAACTGTGACAAAGATGTCAAACATTACAAAGATTCAAACACTAATTGGTGATGCAATAGGTCTGAATTTTGATGATACGACAGATATAGCTGAATCTACTTGTTGCATGTGTTTTGTTAATAATAAAAGATTGACAACTGCAGAAAGAGCTCTTCTTCTGTGTGCTAAGATGAAAGAGCTTGAAACAGTCCTAGTTGTGGTGTGTGATCTTTATGGTAGACTTGATTTAAGTAAGATTGGTATCCCCTTTGGTGAAGATCATAATGGTTGCAAGATATTGCTCACATCTACAAGTTTGGAGATTTTATCCAAACAAATGAAGGTTCATAACTTGATACAACTAGACATGACATGA

Protein sequence

>Msa0565730

MKSGDWDGYKKASFGDINITSVDDRVMEQIMGALRVRDQDKRVKASVKTTIRRSERDQLFQKIVTATVTKKPDITKIQTQIGDAIGLNFNDKMNVAVSTCCMRFGNSEIGVPFGEDHNGCKILLTSTSVEQEQIMEDIAGAYFPDIYIPNDDRVKEQIMSALRVSNQGENLIGLCGPDRRVKAYVKTVIRRAERDQLFQKIVTTTTVTKMSNITKIQTLIGDAIGLNFDDTTDIAESTCCMCFVNNKRLTTAERALLLCAKMKELETVLVVVCDLYGRLDLSKIGIPFGEDHNGCKILLTSTSLEILSKQMKVHNLIQLDMT*