AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318510 MtrunA17_Chr2g0292291 91.785 353 29 0 1 353 1 353 0.0 655
Msa0318510 MtrunA17_Chr2g0292261 76.353 351 81 2 4 353 3 352 0.0 528
Msa0318510 MtrunA17_Chr2g0292271 73.714 350 87 4 7 353 6 353 0.0 504
Msa0318510 MtrunA17_Chr2g0292241 68.644 354 106 2 4 353 3 355 7.78e-178 497
Msa0318510 MtrunA17_Chr2g0292181 68.182 352 109 2 4 353 12 362 2.58e-174 488
Msa0318510 MtrunA17_Chr2g0292211 68.023 344 108 2 11 353 21 363 1.87e-170 479
Msa0318510 MtrunA17_Chr2g0292251 70.060 334 94 3 23 351 21 353 4.26e-166 467
Msa0318510 MtrunA17_Chr2g0292111 63.842 354 123 2 3 352 2 354 4.44e-160 452
Msa0318510 MtrunA17_Chr2g0292151 64.407 354 120 3 4 353 3 354 1.94e-157 445
Msa0318510 MtrunA17_Chr2g0291751 62.890 353 126 2 4 352 3 354 6.98e-157 444
Msa0318510 MtrunA17_Chr2g0292091 62.941 340 118 3 14 353 13 344 9.14e-149 423
Msa0318510 MtrunA17_Chr2g0292101 62.391 343 121 3 11 353 11 345 1.05e-144 412
Msa0318510 MtrunA17_Chr7g0258811 59.416 308 123 2 26 332 65 371 5.00e-122 356
Msa0318510 MtrunA17_Chr1g0175561 57.372 312 131 2 22 332 16 326 6.57e-119 347
Msa0318510 MtrunA17_Chr2g0292281 73.967 242 50 3 112 353 9 237 1.19e-118 342
Msa0318510 MtrunA17_Chr8g0372601 50.329 304 149 2 30 333 30 331 3.30e-103 306
Msa0318510 MtrunA17_Chr4g0070951 48.955 335 164 4 1 333 1 330 3.58e-101 301
Msa0318510 MtrunA17_Chr5g0404721 49.835 303 150 2 30 332 30 330 5.03e-100 298
Msa0318510 MtrunA17_Chr1g0155611 49.505 303 152 1 30 332 46 347 1.17e-97 293
Msa0318510 MtrunA17_Chr2g0320091 46.462 325 165 2 8 332 3 318 1.39e-96 289
Msa0318510 MtrunA17_Chr5g0402581 46.885 305 159 2 28 332 25 326 1.86e-96 289
Msa0318510 MtrunA17_Chr5g0402571 47.231 307 155 3 28 332 25 326 2.17e-95 286
Msa0318510 MtrunA17_Chr4g0043391 47.649 319 158 3 16 332 13 324 5.30e-94 283
Msa0318510 MtrunA17_Chr4g0013171 47.649 319 155 5 16 332 13 321 2.04e-93 281
Msa0318510 MtrunA17_Chr3g0106921 47.222 324 156 5 11 332 10 320 2.13e-93 281
Msa0318510 MtrunA17_Chr2g0299691 48.377 308 153 3 29 333 55 359 3.04e-93 282
Msa0318510 MtrunA17_Chr3g0129051 46.605 324 159 4 6 328 8 318 7.34e-93 280
Msa0318510 MtrunA17_Chr4g0038171 47.727 308 152 3 27 332 21 321 2.73e-92 278
Msa0318510 MtrunA17_Chr2g0320071 45.231 325 168 3 8 332 3 317 9.34e-92 277
Msa0318510 MtrunA17_Chr2g0320101 46.626 326 162 5 8 332 3 317 1.12e-91 277
Msa0318510 MtrunA17_Chr3g0114451 45.928 307 156 3 26 332 22 318 2.06e-90 273
Msa0318510 MtrunA17_Chr4g0013181 49.338 302 141 5 33 332 62 353 9.99e-90 273
Msa0318510 MtrunA17_Chr2g0320061 44.923 325 170 3 8 332 3 318 1.14e-89 271
Msa0318510 MtrunA17_Chr4g0038151 45.509 334 163 6 1 332 5 321 8.05e-89 270
Msa0318510 MtrunA17_Chr7g0244461 45.752 306 156 3 27 332 17 312 8.93e-89 269
Msa0318510 MtrunA17_Chr4g0013201 45.338 311 160 3 22 332 38 338 1.09e-88 270
Msa0318510 MtrunA17_Chr2g0320031 46.732 306 154 4 27 332 23 319 1.59e-87 266
Msa0318510 MtrunA17_Chr2g0320051 44.308 325 172 3 8 332 3 318 4.09e-87 265
Msa0318510 MtrunA17_Chr4g0038161 44.910 334 164 5 1 332 5 320 7.18e-87 265
Msa0318510 MtrunA17_Chr3g0129061 45.370 324 163 4 6 328 8 318 2.12e-86 263
Msa0318510 MtrunA17_Chr5g0432441 45.370 324 165 4 12 332 12 326 7.42e-86 262
Msa0318510 MtrunA17_Chr7g0244451 46.203 316 160 3 17 332 11 316 1.57e-85 261
Msa0318510 MtrunA17_Chr3g0129041 45.732 328 164 4 6 332 8 322 2.18e-85 261
Msa0318510 MtrunA17_Chr5g0432351 44.776 335 168 6 1 332 1 321 3.39e-85 260
Msa0318510 MtrunA17_Chr4g0068621 44.737 304 162 4 30 332 38 336 5.09e-85 260
Msa0318510 MtrunA17_Chr5g0432341 46.129 310 155 5 28 334 23 323 1.55e-84 259
Msa0318510 MtrunA17_Chr5g0438021 42.947 319 168 4 15 332 20 325 7.92e-84 257
Msa0318510 MtrunA17_Chr4g0013721 45.307 309 161 5 25 332 95 396 1.01e-83 259
Msa0318510 MtrunA17_Chr4g0013191 45.928 307 157 5 27 332 42 340 1.58e-83 257
Msa0318510 MtrunA17_Chr3g0107881 47.097 310 153 5 26 332 23 324 2.33e-82 253
Msa0318510 MtrunA17_Chr4g0013821 43.506 308 166 5 26 332 24 324 2.48e-82 254
Msa0318510 MtrunA17_Chr5g0400331 45.395 304 161 3 33 332 29 331 4.26e-82 253
Msa0318510 MtrunA17_Chr5g0432331 45.484 310 157 6 28 334 54 354 1.87e-81 252
Msa0318510 MtrunA17_Chr2g0322861 43.114 334 181 7 3 332 58 386 2.99e-81 253
Msa0318510 MtrunA17_Chr5g0421411 44.484 281 152 4 56 333 7 286 3.38e-81 249
Msa0318510 MtrunA17_Chr3g0106901 43.038 316 170 3 17 332 18 323 3.85e-81 250
Msa0318510 MtrunA17_Chr4g0024121 42.547 322 176 6 12 332 13 326 1.94e-80 248
Msa0318510 MtrunA17_Chr1g0213061 42.056 321 174 6 14 332 11 321 1.99e-78 243
Msa0318510 MtrunA17_Chr4g0063671 41.745 321 174 7 17 332 8 320 9.65e-77 239
Msa0318510 MtrunA17_Chr7g0268501 41.745 321 180 5 12 332 7 320 1.42e-76 238
Msa0318510 MtrunA17_Chr7g0268521 41.745 321 180 5 12 332 7 320 1.42e-76 238
Msa0318510 MtrunA17_Chr4g0076211 44.371 302 154 8 35 334 46 335 1.65e-76 238
Msa0318510 MtrunA17_Chr6g0467161 41.566 332 171 8 4 333 27 337 3.18e-74 233
Msa0318510 MtrunA17_Chr8g0371381 41.158 311 168 9 25 332 21 319 5.73e-74 231
Msa0318510 MtrunA17_Chr2g0279041 43.234 303 160 6 34 332 31 325 8.99e-74 231
Msa0318510 MtrunA17_Chr1g0204011 41.558 308 171 6 26 332 23 322 3.12e-72 227
Msa0318510 MtrunA17_Chr3g0128061 38.720 328 194 4 7 333 6 327 3.82e-72 227
Msa0318510 MtrunA17_Chr5g0401431 39.940 333 190 6 3 331 2 328 5.15e-72 227
Msa0318510 MtrunA17_Chr2g0296621 41.528 301 163 6 33 332 53 341 2.18e-71 226
Msa0318510 MtrunA17_Chr5g0405991 39.806 309 175 8 25 332 18 316 1.08e-70 223
Msa0318510 MtrunA17_Chr7g0224371 38.871 319 180 5 16 332 17 322 1.12e-70 223
Msa0318510 MtrunA17_Chr1g0194151 38.554 332 198 4 5 332 4 333 8.21e-70 221
Msa0318510 MtrunA17_Chr7g0254201 39.088 307 173 6 28 332 18 312 1.11e-69 220
Msa0318510 MtrunA17_Chr4g0075241 39.039 333 192 6 5 332 1 327 3.15e-69 219
Msa0318510 MtrunA17_Chr6g0477071 37.202 336 184 10 6 332 25 342 8.51e-69 219
Msa0318510 MtrunA17_Chr1g0157051 39.934 303 174 5 30 332 24 318 9.29e-69 218
Msa0318510 MtrunA17_Chr1g0148021 40.391 307 176 4 29 332 26 328 1.61e-68 218
Msa0318510 MtrunA17_Chr1g0194271 37.719 342 200 5 4 334 3 342 3.06e-68 218
Msa0318510 MtrunA17_Chr6g0467121 42.715 302 154 9 34 332 78 363 2.76e-67 216
Msa0318510 MtrunA17_Chr4g0053871 42.308 312 165 7 22 328 19 320 2.81e-67 214
Msa0318510 MtrunA17_Chr2g0278671 41.026 312 171 8 26 332 20 323 3.20e-67 214
Msa0318510 MtrunA17_Chr1g0197411 36.578 339 203 5 1 334 1 332 4.44e-67 214
Msa0318510 MtrunA17_Chr4g0046131 39.672 305 178 4 29 329 41 343 5.15e-67 214
Msa0318510 MtrunA17_Chr7g0225221 41.401 314 165 8 25 332 20 320 6.64e-66 211
Msa0318510 MtrunA17_Chr1g0188431 38.284 303 173 5 30 332 39 327 1.05e-65 211
Msa0318510 MtrunA17_Chr4g0072091 43.092 304 162 6 29 328 23 319 1.84e-65 210
Msa0318510 MtrunA17_Chr6g0467251 40.924 303 161 7 30 328 36 324 3.47e-65 210
Msa0318510 MtrunA17_Chr5g0432401 39.198 324 146 5 12 332 11 286 4.05e-65 207
Msa0318510 MtrunA17_Chr2g0316791 36.441 354 181 8 15 329 55 403 1.14e-62 205
Msa0318510 MtrunA17_Chr1g0164891 37.500 304 181 5 34 332 93 392 1.81e-62 204
Msa0318510 MtrunA17_Chr2g0316481 36.182 351 184 8 15 328 55 402 2.11e-61 202
Msa0318510 MtrunA17_Chr6g0460711 37.117 326 191 7 9 332 1 314 3.90e-61 198
Msa0318510 MtrunA17_Chr7g0254231 36.928 306 176 6 30 333 22 312 1.84e-60 196
Msa0318510 MtrunA17_Chr8g0364291 36.538 312 191 3 26 334 19 326 2.12e-60 197
Msa0318510 MtrunA17_Chr2g0316191 35.775 355 183 8 15 329 55 404 2.33e-60 199
Msa0318510 MtrunA17_Chr2g0329641 34.416 308 191 4 29 332 35 335 2.66e-60 197
Msa0318510 MtrunA17_Chr2g0316831 35.897 351 185 8 15 328 91 438 3.12e-60 200
Msa0318510 MtrunA17_Chr2g0311251 37.612 335 170 8 30 331 11 339 9.53e-60 196
Msa0318510 MtrunA17_Chr2g0311241 33.756 394 179 10 16 331 40 429 9.81e-58 193
Msa0318510 MtrunA17_Chr2g0279061 42.586 263 139 6 74 332 12 266 5.22e-56 184
Msa0318510 MtrunA17_Chr5g0413051 34.405 311 196 6 27 332 70 377 5.42e-56 187
Msa0318510 MtrunA17_Chr6g0451571 33.439 314 193 6 26 332 30 334 1.80e-52 176
Msa0318510 MtrunA17_Chr3g0136751 36.538 312 189 5 25 334 20 324 3.10e-51 173
Msa0318510 MtrunA17_Chr1g0181481 34.740 308 191 4 27 332 24 323 2.97e-50 171
Msa0318510 MtrunA17_Chr1g0181431 34.202 307 192 4 28 332 25 323 5.49e-50 170
Msa0318510 MtrunA17_Chr4g0004591 33.642 324 154 4 27 331 74 355 6.15e-50 171
Msa0318510 MtrunA17_Chr1g0181511 33.766 308 194 4 27 332 24 323 1.18e-49 169
Msa0318510 MtrunA17_Chr4g0074851 33.663 303 191 4 33 333 35 329 7.94e-49 167
Msa0318510 MtrunA17_Chr3g0114461 44.503 191 97 4 142 332 11 192 2.43e-45 153
Msa0318510 MtrunA17_Chr2g0316811 36.398 261 136 6 15 250 29 284 1.46e-42 150
Msa0318510 MtrunA17_Chr3g0114491 53.636 110 51 0 29 138 17 126 5.28e-35 125
Msa0318510 MtrunA17_Chr2g0316141 33.566 286 137 8 76 329 11 275 4.58e-34 127
Msa0318510 MtrunA17_Chr2g0316181 33.566 286 137 8 76 329 11 275 4.58e-34 127
Msa0318510 MtrunA17_Chr3g0104101 37.762 143 85 4 194 333 9 150 1.62e-22 92.4
Msa0318510 MtrunA17_Chr1g0181501 32.292 192 120 4 143 332 6 189 7.68e-22 91.7
Msa0318510 MtrunA17_Chr5g0432321 40.000 125 66 3 151 275 17 132 5.75e-19 82.0
Msa0318510 MtrunA17_Chr2g0316771 30.556 180 90 4 183 331 10 185 1.20e-18 82.8
Msa0318510 MtrunA17_Chr1g0181491 40.741 108 62 2 27 134 9 114 2.00e-18 81.3
Msa0318510 MtrunA17_Chr7g0254181 36.667 120 73 1 77 196 6 122 7.74e-17 77.0
Msa0318510 MtrunA17_Chr5g0432361 42.529 87 49 1 245 331 23 108 1.29e-15 72.0
Msa0318510 MtrunA17_Chr6g0468731 52.113 71 30 2 69 139 22 88 4.19e-15 70.1
Msa0318510 MtrunA17_Chr4g0013811 48.611 72 37 0 142 213 7 78 1.62e-13 65.5
Msa0318510 MtrunA17_Chr1g0196191 49.254 67 33 1 68 134 23 88 4.21e-12 63.5
Msa0318510 MtrunA17_Chr7g0268491 46.053 76 38 2 257 332 25 97 7.03e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318510 AT5G06730.1 59.202 326 132 1 15 340 18 342 5.64e-133 384
Msa0318510 AT5G06720.1 58.491 318 131 1 15 332 17 333 3.42e-128 371
Msa0318510 AT2G38380.1 55.183 328 140 3 26 352 27 348 6.45e-124 360
Msa0318510 AT2G38390.1 53.049 328 147 3 26 352 27 348 9.24e-119 347
Msa0318510 AT3G32980.1 54.545 319 142 3 26 342 27 344 7.87e-116 340
Msa0318510 AT3G49120.1 52.870 331 150 4 15 340 14 343 8.74e-115 337
Msa0318510 AT4G08770.1 51.703 323 153 3 26 346 20 341 6.68e-114 335
Msa0318510 AT3G49110.1 53.943 317 143 3 26 340 29 344 1.19e-113 334
Msa0318510 AT4G08780.1 51.084 323 155 3 26 346 20 341 5.20e-112 330
Msa0318510 AT5G66390.1 46.866 335 173 3 1 332 1 333 4.05e-102 304
Msa0318510 AT2G18150.1 50.498 301 147 2 32 332 38 336 8.48e-102 304
Msa0318510 AT2G18140.1 50.165 303 149 2 30 332 35 335 2.36e-101 302
Msa0318510 AT4G36430.1 49.191 309 155 2 25 333 25 331 4.29e-101 301
Msa0318510 AT5G19890.1 52.597 308 135 6 28 332 28 327 4.76e-99 296
Msa0318510 AT3G50990.1 50.325 308 151 2 25 332 36 341 6.56e-98 294
Msa0318510 AT5G19880.1 50.161 311 149 5 26 332 21 329 8.57e-97 291
Msa0318510 AT1G44970.1 48.077 312 159 2 21 332 38 346 3.03e-96 290
Msa0318510 AT1G49570.1 47.541 305 156 2 28 330 46 348 9.03e-96 289
Msa0318510 AT1G14550.1 47.883 307 151 4 27 332 23 321 6.29e-94 283
Msa0318510 AT5G05340.1 48.366 306 148 3 28 332 28 324 2.97e-93 281
Msa0318510 AT1G14540.1 46.541 318 162 4 15 332 6 315 3.07e-89 271
Msa0318510 AT1G68850.1 45.246 305 162 5 33 333 33 336 3.89e-88 269
Msa0318510 AT1G71695.1 45.652 322 163 6 30 349 44 355 2.60e-85 262
Msa0318510 AT4G16270.1 44.408 304 163 5 30 332 50 348 1.69e-84 260
Msa0318510 AT5G58390.1 44.375 320 167 4 15 332 6 316 5.50e-83 255
Msa0318510 AT2G22420.1 41.896 327 177 4 6 332 6 319 1.70e-82 254
Msa0318510 AT5G58400.1 43.887 319 165 5 16 332 19 325 5.25e-80 248
Msa0318510 AT2G35380.1 46.205 303 158 4 34 332 34 335 7.50e-80 248
Msa0318510 AT2G41480.1 42.169 332 176 7 9 332 5 328 1.40e-79 246
Msa0318510 AT1G05260.1 43.506 308 167 6 28 333 24 326 5.03e-78 243
Msa0318510 AT4G11290.1 42.500 320 179 4 15 332 10 326 8.54e-78 242
Msa0318510 AT3G21770.1 43.269 312 170 5 19 328 18 324 2.37e-76 238
Msa0318510 AT5G15180.1 41.914 303 171 4 30 332 32 329 8.47e-76 237
Msa0318510 AT5G17820.1 40.984 305 167 5 28 332 22 313 3.53e-75 235
Msa0318510 AT3G03670.1 40.984 305 176 3 28 332 21 321 2.85e-74 233
Msa0318510 AT5G17820.2 40.984 305 167 5 28 332 75 366 6.68e-74 233
Msa0318510 AT2G18980.1 42.415 323 172 6 16 332 9 323 7.89e-73 229
Msa0318510 AT5G64120.1 42.809 299 162 6 34 332 39 328 1.12e-72 229
Msa0318510 AT3G01190.1 40.625 320 180 7 14 332 11 321 7.24e-72 226
Msa0318510 AT1G05240.1 39.482 309 172 5 30 332 26 325 4.02e-71 225
Msa0318510 AT1G05250.1 39.482 309 172 5 30 332 26 325 4.02e-71 225
Msa0318510 AT4G25980.1 40.061 327 180 7 11 332 11 326 4.28e-71 225
Msa0318510 AT5G51890.1 39.482 309 177 5 26 332 22 322 4.93e-71 224
Msa0318510 AT4G30170.1 41.290 310 170 5 27 332 24 325 3.59e-70 222
Msa0318510 AT4G37530.1 40.836 311 176 5 26 332 23 329 2.41e-69 220
Msa0318510 AT5G14130.1 41.745 321 173 7 19 332 17 330 7.78e-69 219
Msa0318510 AT5G14130.2 41.745 321 173 7 19 332 58 371 2.24e-68 219
Msa0318510 AT5G67400.1 39.339 333 189 6 9 332 1 329 1.81e-67 216
Msa0318510 AT5G64110.1 42.244 303 161 7 34 332 38 330 1.24e-66 213
Msa0318510 AT5G39580.1 40.000 330 181 8 4 332 6 319 2.25e-66 212
Msa0318510 AT5G42180.1 37.539 317 189 6 15 331 9 316 4.60e-66 211
Msa0318510 AT4G26010.1 39.423 312 166 7 25 332 17 309 4.31e-65 209
Msa0318510 AT4G26010.2 39.423 312 166 7 25 332 45 337 7.85e-65 209
Msa0318510 AT3G49960.1 38.110 328 192 6 9 332 9 329 1.00e-63 206
Msa0318510 AT2G39040.1 40.064 312 177 7 27 332 43 350 7.83e-63 204
Msa0318510 AT2G34060.1 38.312 308 182 5 27 329 39 343 6.24e-62 202
Msa0318510 AT4G33870.1 33.728 338 185 5 27 329 65 398 6.26e-62 203
Msa0318510 AT4G37520.1 38.188 309 183 5 28 332 25 329 9.00e-62 201
Msa0318510 AT5G64100.1 39.333 300 172 5 34 332 41 331 2.75e-61 199
Msa0318510 AT1G77100.1 39.103 312 173 7 26 332 20 319 2.80e-61 199
Msa0318510 AT4G37520.2 37.864 309 181 6 28 332 25 326 1.27e-60 197
Msa0318510 AT5G24070.1 37.338 308 175 7 33 332 38 335 1.61e-60 198
Msa0318510 AT4G33420.1 35.045 331 200 7 2 332 10 325 7.82e-60 196
Msa0318510 AT2G35380.2 45.968 248 129 4 89 332 1 247 8.22e-60 193
Msa0318510 AT4G33420.2 35.045 331 200 7 2 332 57 372 4.06e-59 195
Msa0318510 AT4G17690.1 36.570 309 186 4 30 336 26 326 1.65e-58 192
Msa0318510 AT5G40150.1 35.443 316 188 4 22 332 24 328 1.90e-58 192
Msa0318510 AT4G37530.2 41.538 260 148 3 26 282 23 281 5.31e-58 189
Msa0318510 AT3G28200.1 34.505 313 188 4 25 332 16 316 6.29e-58 191
Msa0318510 AT4G31760.1 34.925 335 206 6 1 332 1 326 1.29e-57 190
Msa0318510 AT1G30870.1 35.855 304 181 6 33 333 54 346 2.26e-57 190
Msa0318510 AT1G34510.1 35.948 306 179 6 28 332 20 309 1.29e-56 187
Msa0318510 AT5G47000.1 35.691 311 191 4 28 336 31 334 1.43e-56 187
Msa0318510 AT2G24800.1 36.688 308 185 4 28 332 29 329 4.45e-56 186
Msa0318510 AT2G43480.1 33.236 343 204 8 7 332 1 335 9.49e-56 185
Msa0318510 AT5G22410.1 35.922 309 179 9 28 329 26 322 1.47e-53 179
Msa0318510 AT1G24110.1 35.562 329 192 9 12 332 6 322 1.51e-53 179
Msa0318510 AT4G21960.1 34.426 305 186 5 33 333 34 328 1.88e-51 174
Msa0318510 AT3G17070.1 35.103 339 199 8 3 332 13 339 4.87e-51 173
Msa0318510 AT2G37130.1 33.981 309 193 5 27 332 27 327 6.44e-48 165
Msa0318510 AT2G37130.2 33.993 303 189 5 33 332 2 296 1.04e-46 160
Msa0318510 AT4G25980.2 44.767 172 91 3 26 197 67 234 2.63e-42 149
Msa0318510 AT3G17070.2 35.185 270 155 8 72 332 18 276 3.28e-36 132
Msa0318510 AT5G39580.2 37.712 236 125 6 4 232 6 226 4.26e-36 131
Msa0318510 AT2G24800.2 38.690 168 99 1 28 195 29 192 9.95e-31 117

Find 91 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGATCTTGTTGCACTTTC+AGG 0.138143 2_4:-17508288 Msa0318510:intron
CCTCTTATTGAGTTGTTATT+TGG 0.152645 2_4:+17509509 None:intergenic
TAAGGCCTCCATGATTAAAA+TGG 0.159041 2_4:-17507717 Msa0318510:CDS
ACATTTAATTTGCAGGCTTT+TGG 0.239478 2_4:-17508447 Msa0318510:intron
ACACACTCTTTATTAATTAT+AGG 0.269215 2_4:+17507550 None:intergenic
ACCATCTTCTGATGAATCTT+TGG 0.276196 2_4:+17507607 None:intergenic
ATTAATAAAGAGTGTGTTCT+AGG 0.277445 2_4:-17507544 Msa0318510:three_prime_UTR
ATGATTAAAATGGGTAATAT+TGG 0.286583 2_4:-17507707 Msa0318510:CDS
TGCCAATGTTTCCTCTGTTC+TGG 0.289881 2_4:-17509402 Msa0318510:intron
CCAAATAACAACTCAATAAG+AGG 0.293702 2_4:-17509509 Msa0318510:CDS
AGCTACCAACCTCACCAATT+TGG 0.295237 2_4:-17507903 Msa0318510:CDS
AAACTATCTCTTCTTCCTAA+TGG 0.298706 2_4:+17508408 None:intergenic
ATAATCGATCAACGAATAAA+AGG 0.305907 2_4:+17508017 None:intergenic
GTAGCTTGATTGCCAATATC+AGG 0.313736 2_4:+17507920 None:intergenic
GGTAATATTGGAGTGTTAAC+TGG 0.323726 2_4:-17507695 Msa0318510:CDS
TTAGTTGTGTCTACCACATA+TGG 0.342611 2_4:+17510150 None:intergenic
ACCATTTCCAACTTGGAGAT+TGG 0.350335 2_4:+17507841 None:intergenic
CTGCATTTCATTTCGTGCTT+CGG 0.355089 2_4:+17510224 None:intergenic
CGAGACATATGCCCTGATAT+TGG 0.358495 2_4:-17507932 Msa0318510:CDS
TTAATTCGGTAAGAAGAAAT+CGG 0.362570 2_4:+17508343 None:intergenic
GTATGCTTGCCAGTTTCATT+AGG 0.363906 2_4:-17509919 Msa0318510:CDS
ACGTGTGCTCTTGTGCTTGC+TGG 0.374638 2_4:-17507514 Msa0318510:three_prime_UTR
AAAACCTCCTTTCTTAATCA+AGG 0.377685 2_4:-17508321 Msa0318510:CDS
TCCAATCTCCAAGTTGGAAA+TGG 0.381417 2_4:-17507842 Msa0318510:CDS
CTCGCTAATTCAAACCTTCC+TGG 0.382514 2_4:-17508369 Msa0318510:CDS
TGGACAATGGAAGTGACATT+TGG 0.402176 2_4:+17509977 None:intergenic
TGCTGTGTAGTGGTTGTGCT+TGG 0.416566 2_4:-17510058 Msa0318510:CDS
TAGTTTGAGTCGAATGCATC+GGG 0.422778 2_4:+17507869 None:intergenic
CCTGATTGGGAAGTTCCATT+AGG 0.430222 2_4:-17508423 Msa0318510:CDS
TAATTCGGTAAGAAGAAATC+GGG 0.434627 2_4:+17508344 None:intergenic
AAGGCCTCCATGATTAAAAT+GGG 0.443699 2_4:-17507716 Msa0318510:CDS
AAAGTGAAGCCTAATGAAAC+TGG 0.444276 2_4:+17509910 None:intergenic
GAAACAAACCATTTCCAACT+TGG 0.447818 2_4:+17507834 None:intergenic
CCTAATGGAACTTCCCAATC+AGG 0.449764 2_4:+17508423 None:intergenic
TGATGAATCTTTGGTGACTT+TGG 0.453307 2_4:+17507616 None:intergenic
CAAGTGTCCTTGTAGAAGTT+AGG 0.456671 2_4:+17510001 None:intergenic
TATTTATATATAGAGAGAAA+TGG 0.466098 2_4:+17510183 None:intergenic
AAACATTTGCCAAGACACTT+TGG 0.466188 2_4:+17509957 None:intergenic
TAGCTCATTCTAAGTAAGAA+AGG 0.470559 2_4:-17507579 Msa0318510:exon
TGTGTAGTGGTTGTGCTTGG+AGG 0.472368 2_4:-17510055 Msa0318510:CDS
AGTAACGTTGTGTTAAGAGT+TGG 0.478819 2_4:+17507965 None:intergenic
GTTGTGTTAAGAGTTGGATC+TGG 0.481831 2_4:+17507971 None:intergenic
TAGTTGTGTCTACCACATAT+GGG 0.482953 2_4:+17510151 None:intergenic
TTAATAAAGAGTGTGTTCTA+GGG 0.489441 2_4:-17507543 Msa0318510:three_prime_UTR
TTCCATTGTCCAAAGTGTCT+TGG 0.498754 2_4:-17509966 Msa0318510:CDS
AAAGCTATTGACAATGTCAA+TGG 0.511312 2_4:+17507772 None:intergenic
GTGTAGTGGTTGTGCTTGGA+GGG 0.511558 2_4:-17510054 Msa0318510:CDS
TTATACAATTTCAGCGGCAC+AGG 0.511624 2_4:-17507998 Msa0318510:CDS
TGTGCAGATATTCTTGCACT+TGG 0.512900 2_4:-17509425 Msa0318510:CDS
TACGTCCAAATTGGTGAGGT+TGG 0.516617 2_4:+17507898 None:intergenic
GTCGAGACCTTGATTAAGAA+AGG 0.519125 2_4:+17508314 None:intergenic
CTTTGGTGACTTTGGTAGCA+AGG 0.519220 2_4:+17507624 None:intergenic
TAACAACTCAATAAGAGGGT+TGG 0.528069 2_4:-17509504 Msa0318510:CDS
TACTACTCCAATCTCCAAGT+TGG 0.528086 2_4:-17507848 Msa0318510:CDS
GTAAGAAGAAATCGGGGACC+AGG 0.531918 2_4:+17508351 None:intergenic
AAGTTGTGCATTTGAAGAGA+AGG 0.538902 2_4:+17510027 None:intergenic
AGCAGCTTTGTGCTGTGTAG+TGG 0.540972 2_4:-17510068 Msa0318510:CDS
AATGGTATCAGCACCAGTTG+TGG 0.543672 2_4:+17507790 None:intergenic
ACCAAAGATTCATCAGAAGA+TGG 0.551368 2_4:-17507608 Msa0318510:CDS
GGTGCTCATACGATTGGAAG+AGG 0.553044 2_4:-17508046 Msa0318510:CDS
ACTCTTTATTAATTATAGGT+AGG 0.554385 2_4:+17507554 None:intergenic
TGTTTATGAAAGGGTTGTGA+TGG 0.564252 2_4:-17509584 Msa0318510:intron
AGTTGTGCATTTGAAGAGAA+GGG 0.569161 2_4:+17510028 None:intergenic
TCTACGATCGTGAGTGAGCA+AGG 0.570553 2_4:-17509539 Msa0318510:CDS
GTAGTTTGAGTCGAATGCAT+CGG 0.574576 2_4:+17507868 None:intergenic
CGAAGCACGAAATGAAATGC+AGG 0.578013 2_4:-17510223 Msa0318510:five_prime_UTR
TGCCAAGACACTTTGGACAA+TGG 0.586007 2_4:+17509964 None:intergenic
TGCTTACGTCCAAATTGGTG+AGG 0.594113 2_4:+17507894 None:intergenic
TAGCTTGATTGCCAATATCA+GGG 0.597537 2_4:+17507921 None:intergenic
TAATCAAGGTCTCGACACTA+CGG 0.598064 2_4:-17508307 Msa0318510:CDS
ATATAGAGAGAAATGGCTTG+TGG 0.600941 2_4:+17510190 None:intergenic
GGAGTGTTAACTGGAACTCA+AGG 0.602686 2_4:-17507686 Msa0318510:CDS
TACCAGAACAGAGGAAACAT+TGG 0.606592 2_4:+17509400 None:intergenic
ATAGACATGAGCCCCATATG+TGG 0.609866 2_4:-17510163 Msa0318510:five_prime_UTR
TAATAAAGAGTGTGTTCTAG+GGG 0.611538 2_4:-17507542 Msa0318510:three_prime_UTR
ACTTGATCCTAACTTCTACA+AGG 0.616898 2_4:-17510008 Msa0318510:CDS
AGTTGTGTCTACCACATATG+GGG 0.618421 2_4:+17510152 None:intergenic
CAAATAACAACTCAATAAGA+GGG 0.624746 2_4:-17509508 Msa0318510:CDS
TCTGCACAAGACACTACACT+AGG 0.628672 2_4:+17509440 None:intergenic
GATCGATTATACAATTTCAG+CGG 0.633260 2_4:-17508004 Msa0318510:CDS
GAAGAAATCGGGGACCAGGA+AGG 0.648154 2_4:+17508355 None:intergenic
CAATATGTACCTGCTTACGA+TGG 0.652990 2_4:-17510331 None:intergenic
AATTCGGTAAGAAGAAATCG+GGG 0.655543 2_4:+17508345 None:intergenic
CTGCACAAGACACTACACTA+GGG 0.661168 2_4:+17509441 None:intergenic
GAGACCTTGATTAAGAAAGG+AGG 0.668028 2_4:+17508317 None:intergenic
GTTTGAGTCGAATGCATCGG+GGG 0.672996 2_4:+17507871 None:intergenic
TGAAACTGGCAAGCATACGA+CGG 0.685043 2_4:+17509924 None:intergenic
GAATCAAATCAAAGCCGCAG+TGG 0.686967 2_4:-17509474 Msa0318510:CDS
TGTGGAACATACCAGAACAG+AGG 0.703628 2_4:+17509391 None:intergenic
AGTTTGAGTCGAATGCATCG+GGG 0.731684 2_4:+17507870 None:intergenic
AGGGCAAGCAAGTTCCACTG+CGG 0.840601 2_4:+17509460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATATATTATTTAA+AGG - chr2_4:17508883-17508902 Msa0318510:intron 0.0%
!!! ATTAAATTTTGTAAGTAAAA+AGG + chr2_4:17508472-17508491 None:intergenic 10.0%
!! TTAAAAATAGTATATTTACA+AGG + chr2_4:17508987-17509006 None:intergenic 10.0%
!!! TAATATGAATAAATTTTGTA+GGG + chr2_4:17509038-17509057 None:intergenic 10.0%
!!! ATAATATGAATAAATTTTGT+AGG + chr2_4:17509039-17509058 None:intergenic 10.0%
!!! TATTAAAAGACATTTTTTAA+AGG + chr2_4:17509110-17509129 None:intergenic 10.0%
!! TATTTATATATAGAGAGAAA+TGG + chr2_4:17507540-17507559 None:intergenic 15.0%
!! TATAAAAGATCTAATTAACT+TGG + chr2_4:17508047-17508066 None:intergenic 15.0%
!!! TTTTAAAATTAACAGAAACA+TGG + chr2_4:17508580-17508599 None:intergenic 15.0%
!! TAAAGGTTTAAATATTCAAA+TGG - chr2_4:17508900-17508919 Msa0318510:intron 15.0%
!!! TTTATTCATATTATCGATTT+TGG - chr2_4:17509045-17509064 Msa0318510:intron 15.0%
!! TTGATATCTATGTTTATGAA+AGG - chr2_4:17508126-17508145 Msa0318510:intron 20.0%
!! TGATATCTATGTTTATGAAA+GGG - chr2_4:17508127-17508146 Msa0318510:intron 20.0%
!! TCAGTTATTATTGAAACTTA+CGG + chr2_4:17508400-17508419 None:intergenic 20.0%
!! CTTGATTATAAAATCAAAGA+TGG + chr2_4:17508802-17508821 None:intergenic 20.0%
!!! CATCTTTGATTTTATAATCA+AGG - chr2_4:17508800-17508819 Msa0318510:intron 20.0%
!!! TGTTTGATCTTTTTCTATTT+AGG + chr2_4:17508864-17508883 None:intergenic 20.0%
!! GGGAATAAAACAAAATAATA+AGG + chr2_4:17509018-17509037 None:intergenic 20.0%
!!! GTGTACATATATAGTTTTTA+AGG + chr2_4:17509473-17509492 None:intergenic 20.0%
!!! ATATGCTTTGATCATTTTTT+AGG - chr2_4:17509653-17509672 Msa0318510:intron 20.0%
!!! AATATTACCCATTTTAATCA+TGG + chr2_4:17510014-17510033 None:intergenic 20.0%
!! ATGATTAAAATGGGTAATAT+TGG - chr2_4:17510013-17510032 Msa0318510:CDS 20.0%
!! ACTCTTTATTAATTATAGGT+AGG + chr2_4:17510169-17510188 None:intergenic 20.0%
!! ACACACTCTTTATTAATTAT+AGG + chr2_4:17510173-17510192 None:intergenic 20.0%
!!! GTACTTTATTTTGTAATCTA+TGG - chr2_4:17510240-17510259 Msa0318510:five_prime_UTR 20.0%
!! TGATTTTATCAAACTAGTTG+CGG + chr2_4:17507933-17507952 None:intergenic 25.0%
! CAAATAACAACTCAATAAGA+GGG - chr2_4:17508212-17508231 Msa0318510:intron 25.0%
!!! GTAAAACAAGTTTTAACATG+TGG - chr2_4:17508423-17508442 Msa0318510:CDS 25.0%
! ATTATAAAATCAAAGATGGC+CGG + chr2_4:17508798-17508817 None:intergenic 25.0%
!! TTGATTTTATAATCAAGGAC+TGG - chr2_4:17508805-17508824 Msa0318510:intron 25.0%
!! TGATTTTATAATCAAGGACT+GGG - chr2_4:17508806-17508825 Msa0318510:intron 25.0%
!!! AGACTGTTATTTTTTACTTG+TGG - chr2_4:17509231-17509250 Msa0318510:intron 25.0%
! TTAATTCGGTAAGAAGAAAT+CGG + chr2_4:17509380-17509399 None:intergenic 25.0%
!!! AAGAAAGGAGGTTTTTAATT+CGG + chr2_4:17509394-17509413 None:intergenic 25.0%
! TTAATTAAGGACACACATAT+AGG + chr2_4:17509516-17509535 None:intergenic 25.0%
! GTCCTTAATTAAAAATCATG+TGG - chr2_4:17509524-17509543 Msa0318510:CDS 25.0%
!!! GTCCACATGATTTTTAATTA+AGG + chr2_4:17509529-17509548 None:intergenic 25.0%
! ATAATCGATCAACGAATAAA+AGG + chr2_4:17509706-17509725 None:intergenic 25.0%
!!! TCTTTTCTTTGAAGCTTTTA+AGG - chr2_4:17509985-17510004 Msa0318510:CDS 25.0%
!! ATTAATAAAGAGTGTGTTCT+AGG - chr2_4:17510176-17510195 Msa0318510:five_prime_UTR 25.0%
!! TTAATAAAGAGTGTGTTCTA+GGG - chr2_4:17510177-17510196 Msa0318510:five_prime_UTR 25.0%
TCTCATCACTCTTGATTTAA+TGG - chr2_4:17507881-17507900 Msa0318510:CDS 30.0%
! ACCAACATCTAACTAAGTTT+TGG - chr2_4:17508084-17508103 Msa0318510:intron 30.0%
TCCAAAACTTAGTTAGATGT+TGG + chr2_4:17508088-17508107 None:intergenic 30.0%
! CCTCTTATTGAGTTGTTATT+TGG + chr2_4:17508214-17508233 None:intergenic 30.0%
CCAAATAACAACTCAATAAG+AGG - chr2_4:17508211-17508230 Msa0318510:intron 30.0%
ATGTGAAGATATAGAAGATG+TGG + chr2_4:17508350-17508369 None:intergenic 30.0%
TCTCATGTGGAAGAAAAAAA+AGG + chr2_4:17508449-17508468 None:intergenic 30.0%
! TGATTAATAGTCTTACCGTT+AGG - chr2_4:17508505-17508524 Msa0318510:intron 30.0%
TAAAGAAAGAACAATGAGCA+TGG + chr2_4:17508535-17508554 None:intergenic 30.0%
!! GAAACTTTCTAGCTACTTAT+CGG + chr2_4:17508839-17508858 None:intergenic 30.0%
TCAAAACCATTGACATTTGA+AGG + chr2_4:17508928-17508947 None:intergenic 30.0%
CTCTCAAGATAAAGTCTAAT+AGG - chr2_4:17509069-17509088 Msa0318510:intron 30.0%
!!! ACATTTAATTTGCAGGCTTT+TGG - chr2_4:17509273-17509292 Msa0318510:intron 30.0%
AAACTATCTCTTCTTCCTAA+TGG + chr2_4:17509315-17509334 None:intergenic 30.0%
TAATTCGGTAAGAAGAAATC+GGG + chr2_4:17509379-17509398 None:intergenic 30.0%
AAAACCTCCTTTCTTAATCA+AGG - chr2_4:17509399-17509418 Msa0318510:intron 30.0%
AGTTTAAATCTCCTCAGAAA+CGG + chr2_4:17509561-17509580 None:intergenic 30.0%
GAGCTTATAACTCATTATGT+AGG - chr2_4:17509610-17509629 Msa0318510:intron 30.0%
ACTCATTATGTAGGTATACT+CGG - chr2_4:17509619-17509638 Msa0318510:intron 30.0%
GATCGATTATACAATTTCAG+CGG - chr2_4:17509716-17509735 Msa0318510:intron 30.0%
AAAGCTATTGACAATGTCAA+TGG + chr2_4:17509951-17509970 None:intergenic 30.0%
!! ATTACCCATTTTAATCATGG+AGG + chr2_4:17510011-17510030 None:intergenic 30.0%
TAGCTCATTCTAAGTAAGAA+AGG - chr2_4:17510141-17510160 Msa0318510:five_prime_UTR 30.0%
! TAATAAAGAGTGTGTTCTAG+GGG - chr2_4:17510178-17510197 Msa0318510:five_prime_UTR 30.0%
ATATAGAGAGAAATGGCTTG+TGG + chr2_4:17507533-17507552 None:intergenic 35.0%
TAGTTGTGTCTACCACATAT+GGG + chr2_4:17507572-17507591 None:intergenic 35.0%
TTAGTTGTGTCTACCACATA+TGG + chr2_4:17507573-17507592 None:intergenic 35.0%
AGTTGTGCATTTGAAGAGAA+GGG + chr2_4:17507695-17507714 None:intergenic 35.0%
AAGTTGTGCATTTGAAGAGA+AGG + chr2_4:17507696-17507715 None:intergenic 35.0%
ACTTGATCCTAACTTCTACA+AGG - chr2_4:17507712-17507731 Msa0318510:CDS 35.0%
AAACATTTGCCAAGACACTT+TGG + chr2_4:17507766-17507785 None:intergenic 35.0%
AAAGTGAAGCCTAATGAAAC+TGG + chr2_4:17507813-17507832 None:intergenic 35.0%
TGTTTATGAAAGGGTTGTGA+TGG - chr2_4:17508136-17508155 Msa0318510:intron 35.0%
TAACAACTCAATAAGAGGGT+TGG - chr2_4:17508216-17508235 Msa0318510:intron 35.0%
GTAAGTAAAAAGGTCTCATG+TGG + chr2_4:17508462-17508481 None:intergenic 35.0%
TTTCTCTCTCCTAGAATAGT+GGG + chr2_4:17508713-17508732 None:intergenic 35.0%
! TTTTCTCTCTCCTAGAATAG+TGG + chr2_4:17508714-17508733 None:intergenic 35.0%
ATGGTACCTTCAAATGTCAA+TGG - chr2_4:17508919-17508938 Msa0318510:intron 35.0%
!! TTGTGGATTTTCACTTTTCC+TGG - chr2_4:17509248-17509267 Msa0318510:intron 35.0%
AATTCGGTAAGAAGAAATCG+GGG + chr2_4:17509378-17509397 None:intergenic 35.0%
! ACATTTTACAACCGTTTCTG+AGG - chr2_4:17509547-17509566 Msa0318510:CDS 35.0%
!!! TTTTTAGGTGCTCATACGAT+TGG - chr2_4:17509668-17509687 Msa0318510:intron 35.0%
AGTAACGTTGTGTTAAGAGT+TGG + chr2_4:17509758-17509777 None:intergenic 35.0%
TAGCTTGATTGCCAATATCA+GGG + chr2_4:17509802-17509821 None:intergenic 35.0%
GAAACAAACCATTTCCAACT+TGG + chr2_4:17509889-17509908 None:intergenic 35.0%
TAAGGCCTCCATGATTAAAA+TGG - chr2_4:17510003-17510022 Msa0318510:CDS 35.0%
AAGGCCTCCATGATTAAAAT+GGG - chr2_4:17510004-17510023 Msa0318510:CDS 35.0%
! GGTAATATTGGAGTGTTAAC+TGG - chr2_4:17510025-17510044 Msa0318510:CDS 35.0%
! TGATGAATCTTTGGTGACTT+TGG + chr2_4:17510107-17510126 None:intergenic 35.0%
ACCAAAGATTCATCAGAAGA+TGG - chr2_4:17510112-17510131 Msa0318510:exon 35.0%
ACCATCTTCTGATGAATCTT+TGG + chr2_4:17510116-17510135 None:intergenic 35.0%
CTGCATTTCATTTCGTGCTT+CGG + chr2_4:17507499-17507518 None:intergenic 40.0%
AGTTGTGTCTACCACATATG+GGG + chr2_4:17507571-17507590 None:intergenic 40.0%
CAAGTGTCCTTGTAGAAGTT+AGG + chr2_4:17507722-17507741 None:intergenic 40.0%
TGGACAATGGAAGTGACATT+TGG + chr2_4:17507746-17507765 None:intergenic 40.0%
! TTCCATTGTCCAAAGTGTCT+TGG - chr2_4:17507754-17507773 Msa0318510:CDS 40.0%
GTATGCTTGCCAGTTTCATT+AGG - chr2_4:17507801-17507820 Msa0318510:CDS 40.0%
TGTGCAGATATTCTTGCACT+TGG - chr2_4:17508295-17508314 Msa0318510:CDS 40.0%
TACCAGAACAGAGGAAACAT+TGG + chr2_4:17508323-17508342 None:intergenic 40.0%
AATGAGCATGGTTGACCTAA+CGG + chr2_4:17508523-17508542 None:intergenic 40.0%
AGCAATGAAAGTCTCTTAGC+CGG - chr2_4:17508776-17508795 Msa0318510:intron 40.0%
!! CTTTCTAGCTACTTATCGGA+TGG + chr2_4:17508835-17508854 None:intergenic 40.0%
CCTGCAAATTAAATGTCACC+AGG + chr2_4:17509269-17509288 None:intergenic 40.0%
!! CCTGGTGACATTTAATTTGC+AGG - chr2_4:17509266-17509285 Msa0318510:intron 40.0%
GAGACCTTGATTAAGAAAGG+AGG + chr2_4:17509406-17509425 None:intergenic 40.0%
GTCGAGACCTTGATTAAGAA+AGG + chr2_4:17509409-17509428 None:intergenic 40.0%
TAATCAAGGTCTCGACACTA+CGG - chr2_4:17509413-17509432 Msa0318510:CDS 40.0%
TCTGAGGAGATTTAAACTCG+AGG - chr2_4:17509563-17509582 Msa0318510:CDS 40.0%
TTATACAATTTCAGCGGCAC+AGG - chr2_4:17509722-17509741 Msa0318510:intron 40.0%
GTTGTGTTAAGAGTTGGATC+TGG + chr2_4:17509752-17509771 None:intergenic 40.0%
GTAGCTTGATTGCCAATATC+AGG + chr2_4:17509803-17509822 None:intergenic 40.0%
TAGTTTGAGTCGAATGCATC+GGG + chr2_4:17509854-17509873 None:intergenic 40.0%
GTAGTTTGAGTCGAATGCAT+CGG + chr2_4:17509855-17509874 None:intergenic 40.0%
TACTACTCCAATCTCCAAGT+TGG - chr2_4:17509872-17509891 Msa0318510:intron 40.0%
! TCCAATCTCCAAGTTGGAAA+TGG - chr2_4:17509878-17509897 Msa0318510:intron 40.0%
ACCATTTCCAACTTGGAGAT+TGG + chr2_4:17509882-17509901 None:intergenic 40.0%
!!! CAAGAGCTTTTTTCCACAAC+TGG - chr2_4:17509917-17509936 Msa0318510:CDS 40.0%
CGAAGCACGAAATGAAATGC+AGG - chr2_4:17507497-17507516 Msa0318510:three_prime_UTR 45.0%
ATAGACATGAGCCCCATATG+TGG - chr2_4:17507557-17507576 Msa0318510:three_prime_UTR 45.0%
TGCCAAGACACTTTGGACAA+TGG + chr2_4:17507759-17507778 None:intergenic 45.0%
TGAAACTGGCAAGCATACGA+CGG + chr2_4:17507799-17507818 None:intergenic 45.0%
GAATCAAATCAAAGCCGCAG+TGG - chr2_4:17508246-17508265 Msa0318510:intron 45.0%
CTGCACAAGACACTACACTA+GGG + chr2_4:17508282-17508301 None:intergenic 45.0%
TCTGCACAAGACACTACACT+AGG + chr2_4:17508283-17508302 None:intergenic 45.0%
TGCCAATGTTTCCTCTGTTC+TGG - chr2_4:17508318-17508337 Msa0318510:CDS 45.0%
TGTGGAACATACCAGAACAG+AGG + chr2_4:17508332-17508351 None:intergenic 45.0%
GAAACTTACGGAGTCGTCTT+AGG + chr2_4:17508388-17508407 None:intergenic 45.0%
CCTAATGGAACTTCCCAATC+AGG + chr2_4:17509300-17509319 None:intergenic 45.0%
CCTGATTGGGAAGTTCCATT+AGG - chr2_4:17509297-17509316 Msa0318510:intron 45.0%
CTCGCTAATTCAAACCTTCC+TGG - chr2_4:17509351-17509370 Msa0318510:intron 45.0%
ACGGATCTTGTTGCACTTTC+AGG - chr2_4:17509432-17509451 Msa0318510:CDS 45.0%
CGAGACATATGCCCTGATAT+TGG - chr2_4:17509788-17509807 Msa0318510:intron 45.0%
AGCTACCAACCTCACCAATT+TGG - chr2_4:17509817-17509836 Msa0318510:intron 45.0%
TACGTCCAAATTGGTGAGGT+TGG + chr2_4:17509825-17509844 None:intergenic 45.0%
TGCTTACGTCCAAATTGGTG+AGG + chr2_4:17509829-17509848 None:intergenic 45.0%
AGTTTGAGTCGAATGCATCG+GGG + chr2_4:17509853-17509872 None:intergenic 45.0%
AATGGTATCAGCACCAGTTG+TGG + chr2_4:17509933-17509952 None:intergenic 45.0%
! GGAGTGTTAACTGGAACTCA+AGG - chr2_4:17510034-17510053 Msa0318510:CDS 45.0%
! CTTTGGTGACTTTGGTAGCA+AGG + chr2_4:17510099-17510118 None:intergenic 45.0%
!! AAATAAAACAAAATAAATTA+AGG + chr2_4:17508959-17508978 None:intergenic 5.0%
! AGCAGCTTTGTGCTGTGTAG+TGG - chr2_4:17507652-17507671 Msa0318510:CDS 50.0%
TGCTGTGTAGTGGTTGTGCT+TGG - chr2_4:17507662-17507681 Msa0318510:CDS 50.0%
TGTGTAGTGGTTGTGCTTGG+AGG - chr2_4:17507665-17507684 Msa0318510:CDS 50.0%
GTGTAGTGGTTGTGCTTGGA+GGG - chr2_4:17507666-17507685 Msa0318510:CDS 50.0%
TCTACGATCGTGAGTGAGCA+AGG - chr2_4:17508181-17508200 Msa0318510:intron 50.0%
TCGAACCTGCCCACTATTCT+AGG - chr2_4:17508701-17508720 Msa0318510:intron 50.0%
!! TCTCTCCTAGAATAGTGGGC+AGG + chr2_4:17508709-17508728 None:intergenic 50.0%
! TGCAGGCTTTTGGTCCTGAT+TGG - chr2_4:17509283-17509302 Msa0318510:intron 50.0%
! GCAGGCTTTTGGTCCTGATT+GGG - chr2_4:17509284-17509303 Msa0318510:intron 50.0%
GTAAGAAGAAATCGGGGACC+AGG + chr2_4:17509372-17509391 None:intergenic 50.0%
GGTGCTCATACGATTGGAAG+AGG - chr2_4:17509674-17509693 Msa0318510:intron 50.0%
GTTTGAGTCGAATGCATCGG+GGG + chr2_4:17509852-17509871 None:intergenic 50.0%
AGGGCAAGCAAGTTCCACTG+CGG + chr2_4:17508263-17508282 None:intergenic 55.0%
GAAGAAATCGGGGACCAGGA+AGG + chr2_4:17509368-17509387 None:intergenic 55.0%
!! GGGGGTGCTTACGTCCAAAT+TGG + chr2_4:17509834-17509853 None:intergenic 55.0%
ACGTGTGCTCTTGTGCTTGC+TGG - chr2_4:17510206-17510225 Msa0318510:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 17507402 17510340 17507402 ID=Msa0318510;Name=Msa0318510
chr2_4 mRNA 17507402 17510340 17507402 ID=Msa0318510-mRNA-1;Parent=Msa0318510;Name=Msa0318510-mRNA-1;_AED=0.27;_eAED=0.27;_QI=224|1|1|1|0.75|0.6|5|166|353
chr2_4 exon 17507402 17507464 17507402 ID=Msa0318510-mRNA-1:exon:6518;Parent=Msa0318510-mRNA-1
chr2_4 exon 17507486 17508067 17507486 ID=Msa0318510-mRNA-1:exon:6517;Parent=Msa0318510-mRNA-1
chr2_4 exon 17508289 17508454 17508289 ID=Msa0318510-mRNA-1:exon:6516;Parent=Msa0318510-mRNA-1
chr2_4 exon 17509403 17509594 17509403 ID=Msa0318510-mRNA-1:exon:6515;Parent=Msa0318510-mRNA-1
chr2_4 exon 17509892 17510340 17509892 ID=Msa0318510-mRNA-1:exon:6514;Parent=Msa0318510-mRNA-1
chr2_4 five_prime_UTR 17510117 17510340 17510117 ID=Msa0318510-mRNA-1:five_prime_utr;Parent=Msa0318510-mRNA-1
chr2_4 CDS 17509892 17510116 17509892 ID=Msa0318510-mRNA-1:cds;Parent=Msa0318510-mRNA-1
chr2_4 CDS 17509403 17509594 17509403 ID=Msa0318510-mRNA-1:cds;Parent=Msa0318510-mRNA-1
chr2_4 CDS 17508289 17508454 17508289 ID=Msa0318510-mRNA-1:cds;Parent=Msa0318510-mRNA-1
chr2_4 CDS 17507589 17508067 17507589 ID=Msa0318510-mRNA-1:cds;Parent=Msa0318510-mRNA-1
chr2_4 three_prime_UTR 17507486 17507588 17507486 ID=Msa0318510-mRNA-1:three_prime_utr;Parent=Msa0318510-mRNA-1
chr2_4 three_prime_UTR 17507402 17507464 17507402 ID=Msa0318510-mRNA-1:three_prime_utr;Parent=Msa0318510-mRNA-1
Gene Sequence

>Msa0318510

ATGAACTCTTCTTTTCATCTCACATTAGCAGCTTTGTGCTGTGTAGTGGTTGTGCTTGGAGGGTTACCCTTCTCTTCAAATGCACAACTTGATCCTAACTTCTACAAGGACACTTGTCCAAATGTCACTTCCATTGTCCAAAGTGTCTTGGCAAATGTTTCTCAGACAGACCGTCGTATGCTTGCCAGTTTCATTAGGCTTCACTTTCACGATTGTTTTGTTCAAGGTTGTGATGGATCACTCTTGTTGAATGACTCTTCTACGATCGTGAGTGAGCAAGGAGCTGTGCCAAATAACAACTCAATAAGAGGGTTGGATGTTGTGAATCAAATCAAAGCCGCAGTGGAACTTGCTTGCCCTAGTGTAGTGTCTTGTGCAGATATTCTTGCACTTGGTGCCAATGTTTCCTCTGTTCTGGCTTTTGGTCCTGATTGGGAAGTTCCATTAGGAAGAAGAGATAGTTTGAATGCAAATCAAACTCTCGCTAATTCAAACCTTCCTGGTCCCCGATTTCTTCTTACCGAATTAAAAACCTCCTTTCTTAATCAAGGTCTCGACACTACGGATCTTGTTGCACTTTCAGGTGCTCATACGATTGGAAGAGGTGTATGCCTTTTATTCGTTGATCGATTATACAATTTCAGCGGCACAGGCAATCCAGATCCAACTCTTAACACAACGTTACTACAATCATTGCGAGACATATGCCCTGATATTGGCAATCAAGCTACCAACCTCACCAATTTGGACGTAAGCACCCCCGATGCATTCGACTCAAACTACTACTCCAATCTCCAAGTTGGAAATGGTTTGTTTCAGAGTGATCAAGAGCTTTTTTCCACAACTGGTGCTGATACCATTGACATTGTCAATAGCTTTAGCAGCAATCAAACTCTTTTCTTTGAAGCTTTTAAGGCCTCCATGATTAAAATGGGTAATATTGGAGTGTTAACTGGAACTCAAGGTGAAGTTAGAACACATTGTAATTTTGTTAATACTGTTAGCCTTGCTACCAAAGTCACCAAAGATTCATCAGAAGATGGTATTGTTAGCTCATTCTAA
Protein sequence

>Msa0318510

MNSSFHLTLAALCCVVVVLGGLPFSSNAQLDPNFYKDTCPNVTSIVQSVLANVSQTDRRMLASFIRLHFHDCFVQGCDGSLLLNDSSTIVSEQGAVPNNNSIRGLDVVNQIKAAVELACPSVVSCADILALGANVSSVLAFGPDWEVPLGRRDSLNANQTLANSNLPGPRFLLTELKTSFLNQGLDTTDLVALSGAHTIGRGVCLLFVDRLYNFSGTGNPDPTLNTTLLQSLRDICPDIGNQATNLTNLDVSTPDAFDSNYYSNLQVGNGLFQSDQELFSTTGADTIDIVNSFSSNQTLFFEAFKASMIKMGNIGVLTGTQGEVRTHCNFVNTVSLATKVTKDSSEDGIVSSF*