AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0631700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631700 MtrunA17_Chr4g0009461 95.222 293 13 1 1 293 16 307 0.0 541
Msa0631700 MtrunA17_Chr3g0112181 34.375 288 106 11 21 291 33 254 1.17e-31 119
Msa0631700 MtrunA17_Chr5g0435711 63.636 77 26 1 20 94 23 99 1.97e-27 107
Msa0631700 MtrunA17_Chr5g0400571 39.888 178 68 9 20 191 58 202 8.05e-26 103
Msa0631700 MtrunA17_Chr2g0315591 79.070 43 8 1 36 77 41 83 3.57e-19 85.1
Msa0631700 MtrunA17_Chr1g0184381 82.051 39 7 0 38 76 29 67 3.67e-17 78.6
Msa0631700 MtrunA17_Chr7g0239441 66.667 42 14 0 44 85 37 78 6.02e-14 68.6
Msa0631700 MtrunA17_Chr4g0032111 75.000 36 9 0 43 78 20 55 6.77e-14 68.9
Msa0631700 MtrunA17_Chr1g0187231 69.444 36 11 0 44 79 18 53 5.45e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631700 AT2G37740.1 32.237 304 167 8 13 292 10 298 3.54e-28 111
Msa0631700 AT5G06070.1 49.107 112 45 3 23 122 32 143 3.17e-25 101
Msa0631700 AT4G17810.2 70.370 54 15 1 20 73 21 73 2.10e-21 90.1
Msa0631700 AT4G17810.1 70.370 54 15 1 20 73 21 73 2.38e-21 90.9
Msa0631700 AT2G42410.2 67.273 55 15 1 37 91 40 91 4.21e-19 84.7
Msa0631700 AT2G42410.1 67.273 55 15 1 37 91 40 91 4.21e-19 84.7
Msa0631700 AT2G42410.3 67.273 55 15 1 37 91 66 117 5.12e-19 85.1
Msa0631700 AT3G23130.1 81.395 43 8 0 36 78 37 79 3.01e-18 82.4
Msa0631700 AT3G09290.1 66.667 39 13 0 44 82 33 71 1.30e-11 62.8

Find 57 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTTGAAAGGAGAAATT+AGG 0.144993 4_3:+14916190 None:intergenic
TCTACCTCCTCAATTGAATT+AGG 0.148497 4_3:+14915838 None:intergenic
AAACCACAAGTAGGAGAATT+AGG 0.187380 4_3:+14916312 None:intergenic
AAATGATCAAGATGAGAATT+AGG 0.200848 4_3:+14916270 None:intergenic
TCGGCTTCTAAGGCTTTATT+TGG 0.268464 4_3:-14916222 Msa0631700:CDS
ACCCCTTCTTCTTCTTGTTA+TGG 0.299377 4_3:-14916636 Msa0631700:CDS
ATCACCTTCGTCGGCTTCTA+AGG 0.311380 4_3:-14916232 Msa0631700:CDS
CCAAAGGTATAATAGATTCT+AGG 0.312053 4_3:-14916080 Msa0631700:CDS
AGAGTTGAAAGGAGAAATTA+GGG 0.331194 4_3:+14916191 None:intergenic
TAATTCTCCTACTTGTGGTT+TGG 0.335006 4_3:-14916310 Msa0631700:CDS
CTTCTTGTTATGGTGATTCA+TGG 0.338824 4_3:-14916626 Msa0631700:CDS
CTACCTCCTCAATTGAATTA+GGG 0.346783 4_3:+14915839 None:intergenic
TGTAGCTATGAGCTTGAATT+TGG 0.353912 4_3:-14916022 Msa0631700:CDS
TTTAGGTCAGCACAAGCATT+AGG 0.361635 4_3:-14916507 Msa0631700:CDS
CCTAGAATCTATTATACCTT+TGG 0.378017 4_3:+14916080 None:intergenic
TTATAAACATCTTGAATAAG+TGG 0.390650 4_3:+14916348 None:intergenic
CTTTCAACTCTTCTGAATCA+TGG 0.401376 4_3:-14916179 Msa0631700:CDS
TTCAATTGAGGAGGTAGATC+TGG 0.403141 4_3:-14915833 Msa0631700:CDS
GAACATAATATATCATTTCC+AGG 0.405382 4_3:+14916147 None:intergenic
AATGATCAAGATGAGAATTA+GGG 0.405455 4_3:+14916271 None:intergenic
GATTCTAGGTTTCGAGGTAA+AGG 0.408364 4_3:-14916066 Msa0631700:CDS
ATTCTAGGTTTCGAGGTAAA+GGG 0.409155 4_3:-14916065 Msa0631700:CDS
GATGCAGCTGCAGGGTCACT+TGG 0.420108 4_3:-14916582 Msa0631700:CDS
TTTGCTGAAGATGCAGCTGC+AGG 0.424497 4_3:-14916591 Msa0631700:CDS
AACCACAAGTAGGAGAATTA+GGG 0.432833 4_3:+14916313 None:intergenic
AAGTAGGAGAATTAGGGAAT+AGG 0.457191 4_3:+14916319 None:intergenic
AAGCTACAAGAATATGATCT+TGG 0.459400 4_3:+14916543 None:intergenic
TTCCCTAATTCTCCTACTTG+TGG 0.462438 4_3:-14916315 Msa0631700:CDS
AGGAGGTAGATCTGGAGTTA+AGG 0.476987 4_3:-14915825 Msa0631700:CDS
GTTCAACCCTAATTCAATTG+AGG 0.483460 4_3:-14915845 Msa0631700:CDS
TTCTTGTTATGGTGATTCAT+GGG 0.486889 4_3:-14916625 Msa0631700:CDS
AAGATTTCAATTGCAAGAAG+AGG 0.493658 4_3:-14915951 Msa0631700:CDS
CGATTTCAAGCTCGTGATGA+TGG 0.497652 4_3:+14916391 None:intergenic
ATGCAGCTGCAGGGTCACTT+GGG 0.499136 4_3:-14916581 Msa0631700:CDS
GAATCATGGCTGAATTTACC+TGG 0.500114 4_3:-14916165 Msa0631700:CDS
GTACTCTCAAATTCAACAAG+TGG 0.518666 4_3:+14915982 None:intergenic
CACCATAACAAGAAGAAGAA+GGG 0.522923 4_3:+14916634 None:intergenic
TCACCATAACAAGAAGAAGA+AGG 0.532766 4_3:+14916633 None:intergenic
TTCAGCATCATCACCTTCGT+CGG 0.536497 4_3:-14916241 Msa0631700:CDS
CTACAAGAATATGATCTTGG+TGG 0.544295 4_3:+14916546 None:intergenic
TGGAGTTAAGGCTTGGTACA+AGG 0.549906 4_3:-14915813 Msa0631700:intron
TGCAGCTGCAGGGTCACTTG+GGG 0.554361 4_3:-14916580 Msa0631700:CDS
TTGCTGAAGATGCAGCTGCA+GGG 0.559256 4_3:-14916590 Msa0631700:CDS
CATGATTCAGAAGAGTTGAA+AGG 0.568556 4_3:+14916180 None:intergenic
GTAGATCTGGAGTTAAGGCT+TGG 0.574970 4_3:-14915820 Msa0631700:CDS
TTTGATCATAAAGTCTCCAA+AGG 0.581337 4_3:-14916096 Msa0631700:CDS
ATAATAGATTCTAGGTTTCG+AGG 0.582395 4_3:-14916072 Msa0631700:CDS
TTCTAGGTTTCGAGGTAAAG+GGG 0.591482 4_3:-14916064 Msa0631700:CDS
CAACCCTAATTCAATTGAGG+AGG 0.592265 4_3:-14915842 Msa0631700:CDS
TTATAAACCAAACCACAAGT+AGG 0.601660 4_3:+14916303 None:intergenic
TTTACTGCAACTATATACAC+AGG 0.614043 4_3:-14915561 Msa0631700:CDS
ACCATAACAAGAAGAAGAAG+GGG 0.616165 4_3:+14916635 None:intergenic
TCTAGGTTTCGAGGTAAAGG+GGG 0.621509 4_3:-14916063 Msa0631700:CDS
GCAGCTGCAGGGTCACTTGG+GGG 0.624450 4_3:-14916579 Msa0631700:CDS
AGGTCAGCACAAGCATTAGG+TGG 0.642240 4_3:-14916504 Msa0631700:CDS
AACAACTTTGCAGATATCTG+AGG 0.662909 4_3:+14915597 None:intergenic
AAAGCCTTAGAAGCCGACGA+AGG 0.711061 4_3:+14916228 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAACATCTTGAATAAG+TGG + chr4_3:14915860-14915879 None:intergenic 20.0%
!!! CATATTTTGTTGTTTATCAA+AGG + chr4_3:14916323-14916342 None:intergenic 20.0%
!!! TTGATTTGTTTTTTTTCATG+AGG - chr4_3:14916579-14916598 Msa0631700:CDS 20.0%
!!! TGATTTGTTTTTTTTCATGA+GGG - chr4_3:14916580-14916599 Msa0631700:CDS 20.0%
!! TTATAAACATCTTGAATAAG+TGG + chr4_3:14915860-14915879 None:intergenic 20.0%
!!! CATATTTTGTTGTTTATCAA+AGG + chr4_3:14916323-14916342 None:intergenic 20.0%
!!! TTGATTTGTTTTTTTTCATG+AGG - chr4_3:14916579-14916598 Msa0631700:CDS 20.0%
!!! TGATTTGTTTTTTTTCATGA+GGG - chr4_3:14916580-14916599 Msa0631700:CDS 20.0%
!! TAAAGAATCTGATCATTTTG+TGG + chr4_3:14915773-14915792 None:intergenic 25.0%
! AATGATCAAGATGAGAATTA+GGG + chr4_3:14915937-14915956 None:intergenic 25.0%
! AAATGATCAAGATGAGAATT+AGG + chr4_3:14915938-14915957 None:intergenic 25.0%
! GAACATAATATATCATTTCC+AGG + chr4_3:14916061-14916080 None:intergenic 25.0%
! ATGTTCATTAAGAACAATGA+AGG + chr4_3:14916469-14916488 None:intergenic 25.0%
! CTTAATTTCTTTACCTTACA+AGG - chr4_3:14916540-14916559 Msa0631700:CDS 25.0%
!! TAAAGAATCTGATCATTTTG+TGG + chr4_3:14915773-14915792 None:intergenic 25.0%
! AATGATCAAGATGAGAATTA+GGG + chr4_3:14915937-14915956 None:intergenic 25.0%
! AAATGATCAAGATGAGAATT+AGG + chr4_3:14915938-14915957 None:intergenic 25.0%
! GAACATAATATATCATTTCC+AGG + chr4_3:14916061-14916080 None:intergenic 25.0%
! ATGTTCATTAAGAACAATGA+AGG + chr4_3:14916469-14916488 None:intergenic 25.0%
! CTTAATTTCTTTACCTTACA+AGG - chr4_3:14916540-14916559 Msa0631700:CDS 25.0%
! TTCTTGTTATGGTGATTCAT+GGG - chr4_3:14915580-14915599 Msa0631700:CDS 30.0%
AAGCTACAAGAATATGATCT+TGG + chr4_3:14915665-14915684 None:intergenic 30.0%
TTATAAACCAAACCACAAGT+AGG + chr4_3:14915905-14915924 None:intergenic 30.0%
AGAGTTGAAAGGAGAAATTA+GGG + chr4_3:14916017-14916036 None:intergenic 30.0%
AAGAGTTGAAAGGAGAAATT+AGG + chr4_3:14916018-14916037 None:intergenic 30.0%
TTTGATCATAAAGTCTCCAA+AGG - chr4_3:14916109-14916128 Msa0631700:CDS 30.0%
CCTAGAATCTATTATACCTT+TGG + chr4_3:14916128-14916147 None:intergenic 30.0%
! CCAAAGGTATAATAGATTCT+AGG - chr4_3:14916125-14916144 Msa0631700:CDS 30.0%
ATAATAGATTCTAGGTTTCG+AGG - chr4_3:14916133-14916152 Msa0631700:CDS 30.0%
AAGATTTCAATTGCAAGAAG+AGG - chr4_3:14916254-14916273 Msa0631700:CDS 30.0%
! TATGCTACTTAACTATACCT+TGG + chr4_3:14916419-14916438 None:intergenic 30.0%
TGATGAAAAACTTCCTTGTA+AGG + chr4_3:14916556-14916575 None:intergenic 30.0%
TTTACTGCAACTATATACAC+AGG - chr4_3:14916644-14916663 Msa0631700:CDS 30.0%
! TTCTTGTTATGGTGATTCAT+GGG - chr4_3:14915580-14915599 Msa0631700:CDS 30.0%
AAGCTACAAGAATATGATCT+TGG + chr4_3:14915665-14915684 None:intergenic 30.0%
TTATAAACCAAACCACAAGT+AGG + chr4_3:14915905-14915924 None:intergenic 30.0%
AGAGTTGAAAGGAGAAATTA+GGG + chr4_3:14916017-14916036 None:intergenic 30.0%
AAGAGTTGAAAGGAGAAATT+AGG + chr4_3:14916018-14916037 None:intergenic 30.0%
TTTGATCATAAAGTCTCCAA+AGG - chr4_3:14916109-14916128 Msa0631700:CDS 30.0%
CCTAGAATCTATTATACCTT+TGG + chr4_3:14916128-14916147 None:intergenic 30.0%
! CCAAAGGTATAATAGATTCT+AGG - chr4_3:14916125-14916144 Msa0631700:CDS 30.0%
ATAATAGATTCTAGGTTTCG+AGG - chr4_3:14916133-14916152 Msa0631700:CDS 30.0%
AAGATTTCAATTGCAAGAAG+AGG - chr4_3:14916254-14916273 Msa0631700:CDS 30.0%
! TATGCTACTTAACTATACCT+TGG + chr4_3:14916419-14916438 None:intergenic 30.0%
TGATGAAAAACTTCCTTGTA+AGG + chr4_3:14916556-14916575 None:intergenic 30.0%
TTTACTGCAACTATATACAC+AGG - chr4_3:14916644-14916663 Msa0631700:CDS 30.0%
ACCATAACAAGAAGAAGAAG+GGG + chr4_3:14915573-14915592 None:intergenic 35.0%
CACCATAACAAGAAGAAGAA+GGG + chr4_3:14915574-14915593 None:intergenic 35.0%
TCACCATAACAAGAAGAAGA+AGG + chr4_3:14915575-14915594 None:intergenic 35.0%
! CTTCTTGTTATGGTGATTCA+TGG - chr4_3:14915579-14915598 Msa0631700:CDS 35.0%
CTACAAGAATATGATCTTGG+TGG + chr4_3:14915662-14915681 None:intergenic 35.0%
! GCTTTTGTAGAAGAGAGTTT+AGG - chr4_3:14915681-14915700 Msa0631700:intron 35.0%
AAGTAGGAGAATTAGGGAAT+AGG + chr4_3:14915889-14915908 None:intergenic 35.0%
AACCACAAGTAGGAGAATTA+GGG + chr4_3:14915895-14915914 None:intergenic 35.0%
AAACCACAAGTAGGAGAATT+AGG + chr4_3:14915896-14915915 None:intergenic 35.0%
TAATTCTCCTACTTGTGGTT+TGG - chr4_3:14915895-14915914 Msa0631700:CDS 35.0%
CATGATTCAGAAGAGTTGAA+AGG + chr4_3:14916028-14916047 None:intergenic 35.0%
CTTTCAACTCTTCTGAATCA+TGG - chr4_3:14916026-14916045 Msa0631700:CDS 35.0%
ATTCTAGGTTTCGAGGTAAA+GGG - chr4_3:14916140-14916159 Msa0631700:CDS 35.0%
TGTAGCTATGAGCTTGAATT+TGG - chr4_3:14916183-14916202 Msa0631700:CDS 35.0%
GTACTCTCAAATTCAACAAG+TGG + chr4_3:14916226-14916245 None:intergenic 35.0%
GTTCAACCCTAATTCAATTG+AGG - chr4_3:14916360-14916379 Msa0631700:CDS 35.0%
CTACCTCCTCAATTGAATTA+GGG + chr4_3:14916369-14916388 None:intergenic 35.0%
TCTACCTCCTCAATTGAATT+AGG + chr4_3:14916370-14916389 None:intergenic 35.0%
AACAACTTTGCAGATATCTG+AGG + chr4_3:14916611-14916630 None:intergenic 35.0%
ACCATAACAAGAAGAAGAAG+GGG + chr4_3:14915573-14915592 None:intergenic 35.0%
CACCATAACAAGAAGAAGAA+GGG + chr4_3:14915574-14915593 None:intergenic 35.0%
TCACCATAACAAGAAGAAGA+AGG + chr4_3:14915575-14915594 None:intergenic 35.0%
! CTTCTTGTTATGGTGATTCA+TGG - chr4_3:14915579-14915598 Msa0631700:CDS 35.0%
CTACAAGAATATGATCTTGG+TGG + chr4_3:14915662-14915681 None:intergenic 35.0%
! GCTTTTGTAGAAGAGAGTTT+AGG - chr4_3:14915681-14915700 Msa0631700:intron 35.0%
AAGTAGGAGAATTAGGGAAT+AGG + chr4_3:14915889-14915908 None:intergenic 35.0%
AACCACAAGTAGGAGAATTA+GGG + chr4_3:14915895-14915914 None:intergenic 35.0%
AAACCACAAGTAGGAGAATT+AGG + chr4_3:14915896-14915915 None:intergenic 35.0%
TAATTCTCCTACTTGTGGTT+TGG - chr4_3:14915895-14915914 Msa0631700:CDS 35.0%
CATGATTCAGAAGAGTTGAA+AGG + chr4_3:14916028-14916047 None:intergenic 35.0%
CTTTCAACTCTTCTGAATCA+TGG - chr4_3:14916026-14916045 Msa0631700:CDS 35.0%
ATTCTAGGTTTCGAGGTAAA+GGG - chr4_3:14916140-14916159 Msa0631700:CDS 35.0%
TGTAGCTATGAGCTTGAATT+TGG - chr4_3:14916183-14916202 Msa0631700:CDS 35.0%
GTACTCTCAAATTCAACAAG+TGG + chr4_3:14916226-14916245 None:intergenic 35.0%
GTTCAACCCTAATTCAATTG+AGG - chr4_3:14916360-14916379 Msa0631700:CDS 35.0%
CTACCTCCTCAATTGAATTA+GGG + chr4_3:14916369-14916388 None:intergenic 35.0%
TCTACCTCCTCAATTGAATT+AGG + chr4_3:14916370-14916389 None:intergenic 35.0%
AACAACTTTGCAGATATCTG+AGG + chr4_3:14916611-14916630 None:intergenic 35.0%
ACCCCTTCTTCTTCTTGTTA+TGG - chr4_3:14915569-14915588 Msa0631700:CDS 40.0%
TTTAGGTCAGCACAAGCATT+AGG - chr4_3:14915698-14915717 Msa0631700:intron 40.0%
TTCCCTAATTCTCCTACTTG+TGG - chr4_3:14915890-14915909 Msa0631700:CDS 40.0%
!! TCGGCTTCTAAGGCTTTATT+TGG - chr4_3:14915983-14916002 Msa0631700:CDS 40.0%
GAATCATGGCTGAATTTACC+TGG - chr4_3:14916040-14916059 Msa0631700:CDS 40.0%
GATTCTAGGTTTCGAGGTAA+AGG - chr4_3:14916139-14916158 Msa0631700:CDS 40.0%
TTCTAGGTTTCGAGGTAAAG+GGG - chr4_3:14916141-14916160 Msa0631700:CDS 40.0%
CAACCCTAATTCAATTGAGG+AGG - chr4_3:14916363-14916382 Msa0631700:CDS 40.0%
TTCAATTGAGGAGGTAGATC+TGG - chr4_3:14916372-14916391 Msa0631700:CDS 40.0%
ACCCCTTCTTCTTCTTGTTA+TGG - chr4_3:14915569-14915588 Msa0631700:CDS 40.0%
TTTAGGTCAGCACAAGCATT+AGG - chr4_3:14915698-14915717 Msa0631700:intron 40.0%
TTCCCTAATTCTCCTACTTG+TGG - chr4_3:14915890-14915909 Msa0631700:CDS 40.0%
!! TCGGCTTCTAAGGCTTTATT+TGG - chr4_3:14915983-14916002 Msa0631700:CDS 40.0%
GAATCATGGCTGAATTTACC+TGG - chr4_3:14916040-14916059 Msa0631700:CDS 40.0%
GATTCTAGGTTTCGAGGTAA+AGG - chr4_3:14916139-14916158 Msa0631700:CDS 40.0%
TTCTAGGTTTCGAGGTAAAG+GGG - chr4_3:14916141-14916160 Msa0631700:CDS 40.0%
CAACCCTAATTCAATTGAGG+AGG - chr4_3:14916363-14916382 Msa0631700:CDS 40.0%
TTCAATTGAGGAGGTAGATC+TGG - chr4_3:14916372-14916391 Msa0631700:CDS 40.0%
CGATTTCAAGCTCGTGATGA+TGG + chr4_3:14915817-14915836 None:intergenic 45.0%
TTCAGCATCATCACCTTCGT+CGG - chr4_3:14915964-14915983 Msa0631700:CDS 45.0%
TCTAGGTTTCGAGGTAAAGG+GGG - chr4_3:14916142-14916161 Msa0631700:CDS 45.0%
! AGGAGGTAGATCTGGAGTTA+AGG - chr4_3:14916380-14916399 Msa0631700:CDS 45.0%
! GTAGATCTGGAGTTAAGGCT+TGG - chr4_3:14916385-14916404 Msa0631700:CDS 45.0%
! TGGAGTTAAGGCTTGGTACA+AGG - chr4_3:14916392-14916411 Msa0631700:CDS 45.0%
CGATTTCAAGCTCGTGATGA+TGG + chr4_3:14915817-14915836 None:intergenic 45.0%
TTCAGCATCATCACCTTCGT+CGG - chr4_3:14915964-14915983 Msa0631700:CDS 45.0%
TCTAGGTTTCGAGGTAAAGG+GGG - chr4_3:14916142-14916161 Msa0631700:CDS 45.0%
! AGGAGGTAGATCTGGAGTTA+AGG - chr4_3:14916380-14916399 Msa0631700:CDS 45.0%
! GTAGATCTGGAGTTAAGGCT+TGG - chr4_3:14916385-14916404 Msa0631700:CDS 45.0%
! TGGAGTTAAGGCTTGGTACA+AGG - chr4_3:14916392-14916411 Msa0631700:CDS 45.0%
TTTGCTGAAGATGCAGCTGC+AGG - chr4_3:14915614-14915633 Msa0631700:CDS 50.0%
TTGCTGAAGATGCAGCTGCA+GGG - chr4_3:14915615-14915634 Msa0631700:CDS 50.0%
GGTCACTTGGGGGATGTATA+TGG - chr4_3:14915636-14915655 Msa0631700:CDS 50.0%
AGGTCAGCACAAGCATTAGG+TGG - chr4_3:14915701-14915720 Msa0631700:intron 50.0%
!! ATCACCTTCGTCGGCTTCTA+AGG - chr4_3:14915973-14915992 Msa0631700:CDS 50.0%
AAAGCCTTAGAAGCCGACGA+AGG + chr4_3:14915980-14915999 None:intergenic 50.0%
! AAGGCTTGGTACAAGGTCCA+AGG - chr4_3:14916399-14916418 Msa0631700:CDS 50.0%
TTTGCTGAAGATGCAGCTGC+AGG - chr4_3:14915614-14915633 Msa0631700:CDS 50.0%
TTGCTGAAGATGCAGCTGCA+GGG - chr4_3:14915615-14915634 Msa0631700:CDS 50.0%
GGTCACTTGGGGGATGTATA+TGG - chr4_3:14915636-14915655 Msa0631700:CDS 50.0%
AGGTCAGCACAAGCATTAGG+TGG - chr4_3:14915701-14915720 Msa0631700:intron 50.0%
!! ATCACCTTCGTCGGCTTCTA+AGG - chr4_3:14915973-14915992 Msa0631700:CDS 50.0%
AAAGCCTTAGAAGCCGACGA+AGG + chr4_3:14915980-14915999 None:intergenic 50.0%
! AAGGCTTGGTACAAGGTCCA+AGG - chr4_3:14916399-14916418 Msa0631700:CDS 50.0%
ATGCAGCTGCAGGGTCACTT+GGG - chr4_3:14915624-14915643 Msa0631700:CDS 55.0%
ATGCAGCTGCAGGGTCACTT+GGG - chr4_3:14915624-14915643 Msa0631700:CDS 55.0%
GATGCAGCTGCAGGGTCACT+TGG - chr4_3:14915623-14915642 Msa0631700:CDS 60.0%
TGCAGCTGCAGGGTCACTTG+GGG - chr4_3:14915625-14915644 Msa0631700:CDS 60.0%
GATGCAGCTGCAGGGTCACT+TGG - chr4_3:14915623-14915642 Msa0631700:CDS 60.0%
TGCAGCTGCAGGGTCACTTG+GGG - chr4_3:14915625-14915644 Msa0631700:CDS 60.0%
GCAGCTGCAGGGTCACTTGG+GGG - chr4_3:14915626-14915645 Msa0631700:CDS 65.0%
GCAGCTGCAGGGTCACTTGG+GGG - chr4_3:14915626-14915645 Msa0631700:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 14915536 14916691 14915536 ID=Msa0631700;Name=Msa0631700
chr4_3 mRNA 14915536 14916691 14915536 ID=Msa0631700-mRNA-1;Parent=Msa0631700;Name=Msa0631700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|2|0|335
chr4_3 exon 14915814 14916691 14915814 ID=Msa0631700-mRNA-1:exon:4205;Parent=Msa0631700-mRNA-1
chr4_3 exon 14915536 14915665 14915536 ID=Msa0631700-mRNA-1:exon:4204;Parent=Msa0631700-mRNA-1
chr4_3 CDS 14915814 14916691 14915814 ID=Msa0631700-mRNA-1:cds;Parent=Msa0631700-mRNA-1
chr4_3 CDS 14915536 14915665 14915536 ID=Msa0631700-mRNA-1:cds;Parent=Msa0631700-mRNA-1
Gene Sequence

>Msa0631700

ATGAGTAATTCAAATCTTGCTACTTCACTAACTACCCCTTCTTCTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGCAGGGTCACTTGGGGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTTTAGGTCAGCACAAGCATTAGGTGGACATATGAATGTTCATAGAAAAGATAGAGCAAGACTCAAACAACAACCACAAAATGATCAGATTCTTTATCATAATCATCATCATCATCACCATCATCACGAGCTTGAAATCGCAACTCATCATGTTCAAAAGCCACTTATTCAAGATGTTTATAATAATAACCTATTCCCTAATTCTCCTACTTGTGGTTTGGTTTATAATAAATCTAACCCTAATTCTCATCTTGATCATTTTGTATCTTCAGCATCATCACCTTCGTCGGCTTCTAAGGCTTTATTTGGAGATGAAACCCTAATTTCTCCTTTCAACTCTTCTGAATCATGGCTGAATTTACCTGGAAATGATATATTATGTTCAACAAAGTTTCAACTTGCTGTTGATAATTTTGATCATAAAGTCTCCAAAGGTATAATAGATTCTAGGTTTCGAGGTAAAGGGGGAAACGACAATGAAAGTGATGTAGCTATGAGCTTGAATTTGGTTTTGTGTAGAACTCATCCACTTGTTGAATTTGAGAGTACTAAAGAAGAAGATTTCAATTGCAAGAAGAGGAAAAAAGATTCTTCATCAAATCAATTATTCTCTAACTCAAGCACCTTTGATAAACAACAAAATATGCAAGCAAAGATGTTTGAGTTCAACCCTAATTCAATTGAGGAGGTAGATCTGGAGTTAAGGCTTGGTACAAGGAAGTTTTTCATCATGTTTGATTTGTTTTTTTTCATGAGGGTTCAGCCTCAGATATCTGCAAAGTTGTTTGTCATGATAGCATTTACTGCAACTATATACACAGGCTTTTGTAAACTTCTTCTTCTTTGA

Protein sequence

>Msa0631700

MSNSNLATSLTTPSSSCYGDSWEEQAFAEDAAAGSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQQPQNDQILYHNHHHHHHHHELEIATHHVQKPLIQDVYNNNLFPNSPTCGLVYNKSNPNSHLDHFVSSASSPSSASKALFGDETLISPFNSSESWLNLPGNDILCSTKFQLAVDNFDHKVSKGIIDSRFRGKGGNDNESDVAMSLNLVLCRTHPLVEFESTKEEDFNCKKRKKDSSSNQLFSNSSTFDKQQNMQAKMFEFNPNSIEEVDLELRLGTRKFFIMFDLFFFMRVQPQISAKLFVMIAFTATIYTGFCKLLLL*