AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1076830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076830 MtrunA17_Chr7g0260971 98.165 218 4 0 28 245 1 218 6.84e-164 452
Msa1076830 MtrunA17_Chr1g0184281 59.649 228 59 10 28 245 1 205 4.87e-79 236
Msa1076830 MtrunA17_Chr7g0261031 70.796 113 33 0 36 148 3 115 1.11e-54 175
Msa1076830 MtrunA17_Chr1g0184271 71.429 105 30 0 41 145 12 116 5.43e-52 168
Msa1076830 MtrunA17_Chr8g0351721 67.857 112 36 0 32 143 9 120 1.64e-50 164
Msa1076830 MtrunA17_Chr8g0351701 55.882 136 60 0 41 176 23 158 2.25e-49 162
Msa1076830 MtrunA17_Chr6g0460951 67.961 103 33 0 40 142 39 141 2.16e-46 154
Msa1076830 MtrunA17_Chr5g0435641 64.000 100 36 0 36 135 2 101 4.74e-45 149
Msa1076830 MtrunA17_Chr7g0245871 66.667 102 34 0 41 142 27 128 9.10e-45 150
Msa1076830 MtrunA17_Chr2g0311601 56.637 113 48 1 32 144 4 115 3.21e-43 144
Msa1076830 MtrunA17_Chr4g0043421 47.500 160 74 5 28 186 1 151 7.81e-41 138
Msa1076830 MtrunA17_Chr7g0227511 60.000 115 42 2 28 142 1 111 1.84e-40 137
Msa1076830 MtrunA17_Chr7g0245861 68.367 98 29 2 33 128 4 101 6.95e-40 134
Msa1076830 MtrunA17_Chr5g0437571 56.604 106 45 1 37 142 2 106 1.72e-38 132
Msa1076830 MtrunA17_Chr3g0117121 57.273 110 46 1 33 142 2 110 3.52e-38 132
Msa1076830 MtrunA17_Chr3g0114061 51.613 124 58 2 38 160 5 127 5.71e-38 130
Msa1076830 MtrunA17_Chr4g0058651 60.194 103 40 1 40 142 10 111 1.74e-37 130
Msa1076830 MtrunA17_Chr3g0106101 56.075 107 45 2 37 142 2 107 2.23e-37 129
Msa1076830 MtrunA17_Chr6g0449641 56.881 109 46 1 34 142 2 109 3.92e-37 127
Msa1076830 MtrunA17_Chr5g0438091 53.333 105 48 1 38 142 36 139 2.74e-36 127
Msa1076830 MtrunA17_Chr5g0402611 55.357 112 49 1 35 146 2 112 8.13e-36 129
Msa1076830 MtrunA17_Chr5g0437401 51.327 113 54 1 32 144 2 113 1.07e-35 125
Msa1076830 MtrunA17_Chr3g0129071 47.287 129 66 2 14 142 21 147 1.46e-34 124
Msa1076830 MtrunA17_Chr6g0449651 54.630 108 48 1 35 142 61 167 2.66e-34 122
Msa1076830 MtrunA17_Chr3g0097221 54.630 108 48 1 36 143 2 108 4.06e-34 124
Msa1076830 MtrunA17_Chr3g0113891 50.000 112 55 1 28 139 1 111 9.15e-34 120
Msa1076830 MtrunA17_Chr5g0432451 56.250 112 48 1 31 142 33 143 1.18e-33 121
Msa1076830 MtrunA17_Chr4g0030001 50.000 114 55 2 30 142 13 125 1.70e-33 119
Msa1076830 MtrunA17_Chr3g0115431 55.046 109 48 1 35 143 3 110 1.76e-33 120
Msa1076830 MtrunA17_Chr8g0353981 56.897 116 42 2 28 143 1 108 6.36e-33 119
Msa1076830 MtrunA17_Chr6g0460941 63.636 88 32 0 41 128 7 94 3.16e-32 113
Msa1076830 MtrunA17_Chr7g0225111 43.363 113 63 1 40 152 4 115 6.09e-30 108
Msa1076830 MtrunA17_Chr5g0444351 42.742 124 69 2 42 164 6 128 2.10e-29 107
Msa1076830 MtrunA17_Chr1g0200201 50.495 101 49 1 42 142 73 172 2.42e-29 110
Msa1076830 MtrunA17_Chr4g0059901 41.509 106 61 1 37 142 6 110 2.65e-23 95.1
Msa1076830 MtrunA17_Chr8g0374601 43.689 103 57 1 41 143 26 127 4.26e-23 94.7
Msa1076830 MtrunA17_Chr8g0374591 41.748 103 59 1 41 143 8 109 3.30e-21 85.9
Msa1076830 MtrunA17_Chr8g0342351 40.566 106 62 1 38 143 9 113 1.60e-20 87.4
Msa1076830 MtrunA17_Chr2g0330201 37.383 107 66 1 37 143 15 120 1.76e-19 85.5
Msa1076830 MtrunA17_Chr6g0452671 32.824 131 87 1 38 168 8 137 3.70e-19 82.4
Msa1076830 MtrunA17_Chr6g0452691 30.645 186 117 6 42 226 10 184 2.19e-18 80.1
Msa1076830 MtrunA17_Chr6g0452661 35.780 109 68 2 42 149 10 117 2.07e-17 79.0
Msa1076830 MtrunA17_Chr8g0374581 39.806 103 60 2 41 142 8 109 6.35e-17 77.0
Msa1076830 MtrunA17_Chr4g0040831 34.400 125 68 3 27 141 4 124 2.28e-16 75.1
Msa1076830 MtrunA17_Chr4g0055441 35.780 109 68 2 42 149 3 110 1.11e-15 72.0
Msa1076830 MtrunA17_Chr2g0326041 56.250 48 20 1 40 87 32 78 2.54e-13 63.9
Msa1076830 MtrunA17_Chr5g0439111 33.654 104 67 2 42 144 10 112 6.94e-13 66.2
Msa1076830 MtrunA17_Chr2g0326051 50.000 54 27 0 89 142 7 60 2.78e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076830 AT2G42430.1 55.422 249 76 9 28 245 1 245 4.89e-79 238
Msa1076830 AT3G58190.1 62.205 127 40 1 41 159 11 137 3.70e-53 171
Msa1076830 AT3G03760.1 76.699 103 24 0 40 142 50 152 3.66e-51 168
Msa1076830 AT4G00210.1 66.964 112 37 0 32 143 2 113 5.97e-51 166
Msa1076830 AT2G45420.1 76.000 100 24 0 44 143 40 139 5.18e-50 164
Msa1076830 AT2G42440.1 61.600 125 40 1 36 152 2 126 5.40e-50 164
Msa1076830 AT2G31310.1 61.404 114 44 0 37 150 3 116 6.71e-50 162
Msa1076830 AT5G06080.1 60.331 121 47 1 39 159 5 124 8.96e-47 154
Msa1076830 AT4G00220.1 69.000 100 31 0 44 143 20 119 6.08e-45 150
Msa1076830 AT2G45410.1 68.000 100 32 0 44 143 19 118 2.64e-44 148
Msa1076830 AT5G63090.4 58.120 117 45 2 28 144 1 113 1.01e-38 133
Msa1076830 AT5G63090.3 58.120 117 45 2 28 144 1 113 1.01e-38 133
Msa1076830 AT5G63090.2 58.120 117 45 2 28 144 1 113 1.01e-38 133
Msa1076830 AT5G63090.1 58.120 117 45 2 28 144 1 113 1.01e-38 133
Msa1076830 AT3G27650.1 56.481 108 46 1 35 142 33 139 8.22e-38 130
Msa1076830 AT2G30130.1 57.009 107 44 2 37 142 3 108 1.13e-36 128
Msa1076830 AT1G31320.1 58.696 92 37 1 37 128 9 99 5.60e-36 125
Msa1076830 AT2G30340.1 44.828 145 76 3 17 158 26 169 7.85e-36 128
Msa1076830 AT2G30340.2 44.828 145 76 3 17 158 27 170 1.05e-35 128
Msa1076830 AT1G07900.1 53.398 103 47 1 40 142 32 133 1.97e-34 122
Msa1076830 AT2G28500.1 53.398 103 47 1 40 142 54 155 1.20e-33 121
Msa1076830 AT5G66870.1 39.884 173 88 4 36 207 2 159 1.77e-33 123
Msa1076830 AT3G11090.1 46.094 128 67 2 32 158 2 128 3.43e-33 118
Msa1076830 AT1G65620.1 59.091 110 44 1 34 143 2 110 1.39e-32 118
Msa1076830 AT1G65620.4 59.091 110 44 1 34 143 2 110 1.39e-32 118
Msa1076830 AT1G65620.3 59.091 110 44 1 34 143 2 110 1.39e-32 118
Msa1076830 AT1G65620.5 59.091 110 44 1 34 143 2 110 1.39e-32 118
Msa1076830 AT1G65620.2 59.091 110 44 1 34 143 2 110 1.39e-32 118
Msa1076830 AT1G16530.1 51.852 108 50 2 38 144 11 117 2.10e-32 116
Msa1076830 AT2G23660.2 50.485 103 50 1 40 142 4 105 5.15e-31 117
Msa1076830 AT2G23660.3 50.485 103 50 1 40 142 4 105 5.15e-31 117
Msa1076830 AT2G23660.1 50.485 103 50 1 40 142 4 105 5.15e-31 117
Msa1076830 AT2G40470.1 51.613 124 56 3 21 142 24 145 3.96e-30 112
Msa1076830 AT2G40470.2 56.190 105 45 1 38 142 17 120 5.95e-30 111
Msa1076830 AT3G26660.1 44.118 102 56 1 42 143 6 106 6.50e-29 106
Msa1076830 AT3G26620.1 44.118 102 56 1 42 143 6 106 1.10e-28 105
Msa1076830 AT3G50510.1 47.115 104 54 1 40 143 11 113 2.56e-24 96.7
Msa1076830 AT3G50510.2 47.115 104 54 1 40 143 11 113 2.56e-24 96.7
Msa1076830 AT3G47870.1 38.679 106 64 1 37 142 32 136 2.12e-20 88.6
Msa1076830 AT3G13850.1 42.157 102 58 1 42 143 37 137 4.83e-20 86.7
Msa1076830 AT5G35900.1 38.532 109 66 1 42 150 6 113 8.79e-18 79.3
Msa1076830 AT1G72980.1 36.697 109 68 1 35 143 7 114 4.08e-17 77.8
Msa1076830 AT1G06280.1 41.772 79 37 2 42 116 25 98 4.35e-14 69.3
Msa1076830 AT4G22700.1 42.683 82 44 2 42 122 6 85 2.30e-12 64.3

Find 33 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGTAAGTTGGACAAAA+TGG 0.286192 7_2:-75393343 None:intergenic
CAACCTTTCTAATATCAATA+TGG 0.308794 7_2:+75392369 Msa1076830:CDS
AGTGAACTTTGAGGAGATAT+AGG 0.327596 7_2:-75393367 None:intergenic
TGAATAGCTGCAAATCTTGC+AGG 0.329259 7_2:-75392508 None:intergenic
ATCAATATGGCTTCTTCAAA+TGG 0.350219 7_2:+75392382 Msa1076830:CDS
GCAGCTATTCATAAAGTGTT+TGG 0.364830 7_2:+75392520 Msa1076830:CDS
TGTTGTCACAATTGCTTATG+AGG 0.389067 7_2:+75392600 Msa1076830:CDS
CGTATTAGAGACCCTGTATA+TGG 0.390387 7_2:+75392631 Msa1076830:CDS
GTGAACTTTGAGGAGATATA+GGG 0.398352 7_2:-75393366 None:intergenic
TATGCAGGTAGCATGCTTGC+AGG 0.403290 7_2:+75393216 Msa1076830:intron
GGAAACAATAATAATGTTGC+TGG 0.425208 7_2:+75393301 Msa1076830:CDS
GATATAGGGTTCATGTAAGT+TGG 0.426071 7_2:-75393352 None:intergenic
GATGACTCAAGTGAACTTTG+AGG 0.443078 7_2:-75393376 None:intergenic
TGAGAGACACAGCCATATAC+AGG 0.444019 7_2:-75392643 None:intergenic
TCTTCAAATGGAACTAGCTC+TGG 0.444575 7_2:+75392394 Msa1076830:CDS
TCTTATAATTATTACAACCT+TGG 0.449925 7_2:-75393477 None:intergenic
CAATAATAATGATCATGACT+TGG 0.461238 7_2:+75393516 Msa1076830:CDS
GAGAATAATAATCAATGGAC+AGG 0.471919 7_2:+75393280 Msa1076830:CDS
AAGCCATATTGATATTAGAA+AGG 0.497856 7_2:-75392372 None:intergenic
ATTGTGTACCTGTTGTTGTA+AGG 0.501180 7_2:-75392674 None:intergenic
CATAGCAGCAGCATGAATGA+TGG 0.514545 7_2:+75393406 Msa1076830:CDS
ACATAGAGAATAATAATCAA+TGG 0.518649 7_2:+75393275 Msa1076830:CDS
CCTTGTTCTGAGCAAAAGTA+AGG 0.518854 7_2:-75392484 None:intergenic
AATGGAACTAGCTCTGGAAC+TGG 0.534733 7_2:+75392400 Msa1076830:CDS
AGAGAAGATTTCTCATTCCA+AGG 0.536983 7_2:+75393460 Msa1076830:CDS
AATAATAATGATCATGACTT+GGG 0.555968 7_2:+75393517 Msa1076830:CDS
GCTTCACAACGTTCATGAGC+TGG 0.566405 7_2:-75392577 None:intergenic
TCTGGAACTGGTTCTCCTTG+TGG 0.567515 7_2:+75392412 Msa1076830:CDS
AAATAGCACTTAGGATGATG+AGG 0.594424 7_2:+75393551 Msa1076830:CDS
GAATAGCTGCAAATCTTGCA+GGG 0.610026 7_2:-75392507 None:intergenic
AGGAACTTGCATGCTCCACA+AGG 0.611585 7_2:-75392427 None:intergenic
AATTGCAAGAAATAGCACTT+AGG 0.616097 7_2:+75393542 Msa1076830:CDS
GAGAGACACAGCCATATACA+GGG 0.671769 7_2:-75392642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTAAAAAAATAAA+GGG - chr7_2:75392980-75392999 None:intergenic 0.0%
!! AATATATATTAAAAAAATAA+AGG - chr7_2:75392981-75393000 None:intergenic 0.0%
!! ATATATATTAAAAAAATAAA+GGG - chr7_2:75392980-75392999 None:intergenic 0.0%
!! AATATATATTAAAAAAATAA+AGG - chr7_2:75392981-75393000 None:intergenic 0.0%
!! AATTATATAAACTTCACATT+TGG + chr7_2:75392703-75392722 Msa1076830:intron 15.0%
!! AATAAATAATATTCTTTGAC+TGG - chr7_2:75393082-75393101 None:intergenic 15.0%
!! AATTATATAAACTTCACATT+TGG + chr7_2:75392703-75392722 Msa1076830:intron 15.0%
!! AATAAATAATATTCTTTGAC+TGG - chr7_2:75393082-75393101 None:intergenic 15.0%
!!! AGTTTTCTTTTTAATTATGC+AGG + chr7_2:75393201-75393220 Msa1076830:intron 20.0%
!! ACATAGAGAATAATAATCAA+TGG + chr7_2:75393275-75393294 Msa1076830:CDS 20.0%
!! TCTTATAATTATTACAACCT+TGG - chr7_2:75393480-75393499 None:intergenic 20.0%
!! AATAATAATGATCATGACTT+GGG + chr7_2:75393517-75393536 Msa1076830:CDS 20.0%
!!! AGTTTTCTTTTTAATTATGC+AGG + chr7_2:75393201-75393220 Msa1076830:intron 20.0%
!! ACATAGAGAATAATAATCAA+TGG + chr7_2:75393275-75393294 Msa1076830:CDS 20.0%
!! TCTTATAATTATTACAACCT+TGG - chr7_2:75393480-75393499 None:intergenic 20.0%
!! AATAATAATGATCATGACTT+GGG + chr7_2:75393517-75393536 Msa1076830:CDS 20.0%
! CAACCTTTCTAATATCAATA+TGG + chr7_2:75392369-75392388 Msa1076830:CDS 25.0%
! AAGCCATATTGATATTAGAA+AGG - chr7_2:75392375-75392394 None:intergenic 25.0%
!!! TTCTAATTAAAGGTGTTGTT+AGG + chr7_2:75392817-75392836 Msa1076830:intron 25.0%
!!! AGTTCTAAAAAAAACTTTGG+TGG - chr7_2:75392927-75392946 None:intergenic 25.0%
!!! GCAAGTTCTAAAAAAAACTT+TGG - chr7_2:75392930-75392949 None:intergenic 25.0%
! ATCACCTTAATGAATTCTAT+TGG + chr7_2:75393165-75393184 Msa1076830:intron 25.0%
! AGTACCAATAGAATTCATTA+AGG - chr7_2:75393172-75393191 None:intergenic 25.0%
! CAATAATAATGATCATGACT+TGG + chr7_2:75393516-75393535 Msa1076830:CDS 25.0%
! CAACCTTTCTAATATCAATA+TGG + chr7_2:75392369-75392388 Msa1076830:CDS 25.0%
! AAGCCATATTGATATTAGAA+AGG - chr7_2:75392375-75392394 None:intergenic 25.0%
!!! TTCTAATTAAAGGTGTTGTT+AGG + chr7_2:75392817-75392836 Msa1076830:intron 25.0%
!!! AGTTCTAAAAAAAACTTTGG+TGG - chr7_2:75392927-75392946 None:intergenic 25.0%
!!! GCAAGTTCTAAAAAAAACTT+TGG - chr7_2:75392930-75392949 None:intergenic 25.0%
! ATCACCTTAATGAATTCTAT+TGG + chr7_2:75393165-75393184 Msa1076830:intron 25.0%
! AGTACCAATAGAATTCATTA+AGG - chr7_2:75393172-75393191 None:intergenic 25.0%
! CAATAATAATGATCATGACT+TGG + chr7_2:75393516-75393535 Msa1076830:CDS 25.0%
ATCAATATGGCTTCTTCAAA+TGG + chr7_2:75392382-75392401 Msa1076830:CDS 30.0%
GCACTAACACTTCTAATTAA+AGG + chr7_2:75392807-75392826 Msa1076830:intron 30.0%
GAGAATAATAATCAATGGAC+AGG + chr7_2:75393280-75393299 Msa1076830:CDS 30.0%
GGAAACAATAATAATGTTGC+TGG + chr7_2:75393301-75393320 Msa1076830:CDS 30.0%
! TTCATGTAAGTTGGACAAAA+TGG - chr7_2:75393346-75393365 None:intergenic 30.0%
AATTGCAAGAAATAGCACTT+AGG + chr7_2:75393542-75393561 Msa1076830:CDS 30.0%
ATCAATATGGCTTCTTCAAA+TGG + chr7_2:75392382-75392401 Msa1076830:CDS 30.0%
GCACTAACACTTCTAATTAA+AGG + chr7_2:75392807-75392826 Msa1076830:intron 30.0%
GAGAATAATAATCAATGGAC+AGG + chr7_2:75393280-75393299 Msa1076830:CDS 30.0%
GGAAACAATAATAATGTTGC+TGG + chr7_2:75393301-75393320 Msa1076830:CDS 30.0%
! TTCATGTAAGTTGGACAAAA+TGG - chr7_2:75393346-75393365 None:intergenic 30.0%
AATTGCAAGAAATAGCACTT+AGG + chr7_2:75393542-75393561 Msa1076830:CDS 30.0%
TAAGGTGCAAAAATGCAATC+AGG - chr7_2:75392469-75392488 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG + chr7_2:75392520-75392539 Msa1076830:CDS 35.0%
TGTTGTCACAATTGCTTATG+AGG + chr7_2:75392600-75392619 Msa1076830:CDS 35.0%
! CATTTTTGCCTTACAACAAC+AGG + chr7_2:75392666-75392685 Msa1076830:CDS 35.0%
ATTGTGTACCTGTTGTTGTA+AGG - chr7_2:75392677-75392696 None:intergenic 35.0%
ATGTGATCAATCACATGTGT+AGG - chr7_2:75392866-75392885 None:intergenic 35.0%
! CTACTCCTGTCTTTTTCTTA+AGG + chr7_2:75393037-75393056 Msa1076830:intron 35.0%
AAGAGCCTTAAGAAAAAGAC+AGG - chr7_2:75393045-75393064 None:intergenic 35.0%
GATATAGGGTTCATGTAAGT+TGG - chr7_2:75393355-75393374 None:intergenic 35.0%
! GTGAACTTTGAGGAGATATA+GGG - chr7_2:75393369-75393388 None:intergenic 35.0%
! AGTGAACTTTGAGGAGATAT+AGG - chr7_2:75393370-75393389 None:intergenic 35.0%
AGAGAAGATTTCTCATTCCA+AGG + chr7_2:75393460-75393479 Msa1076830:CDS 35.0%
AAATAGCACTTAGGATGATG+AGG + chr7_2:75393551-75393570 Msa1076830:CDS 35.0%
TAAGGTGCAAAAATGCAATC+AGG - chr7_2:75392469-75392488 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG + chr7_2:75392520-75392539 Msa1076830:CDS 35.0%
TGTTGTCACAATTGCTTATG+AGG + chr7_2:75392600-75392619 Msa1076830:CDS 35.0%
! CATTTTTGCCTTACAACAAC+AGG + chr7_2:75392666-75392685 Msa1076830:CDS 35.0%
ATTGTGTACCTGTTGTTGTA+AGG - chr7_2:75392677-75392696 None:intergenic 35.0%
ATGTGATCAATCACATGTGT+AGG - chr7_2:75392866-75392885 None:intergenic 35.0%
! CTACTCCTGTCTTTTTCTTA+AGG + chr7_2:75393037-75393056 Msa1076830:intron 35.0%
AAGAGCCTTAAGAAAAAGAC+AGG - chr7_2:75393045-75393064 None:intergenic 35.0%
GATATAGGGTTCATGTAAGT+TGG - chr7_2:75393355-75393374 None:intergenic 35.0%
! GTGAACTTTGAGGAGATATA+GGG - chr7_2:75393369-75393388 None:intergenic 35.0%
! AGTGAACTTTGAGGAGATAT+AGG - chr7_2:75393370-75393389 None:intergenic 35.0%
AGAGAAGATTTCTCATTCCA+AGG + chr7_2:75393460-75393479 Msa1076830:CDS 35.0%
AAATAGCACTTAGGATGATG+AGG + chr7_2:75393551-75393570 Msa1076830:CDS 35.0%
TCTTCAAATGGAACTAGCTC+TGG + chr7_2:75392394-75392413 Msa1076830:CDS 40.0%
! CAGGTGCACATTTTCTTCTA+AGG - chr7_2:75392450-75392469 None:intergenic 40.0%
! CCTTGTTCTGAGCAAAAGTA+AGG - chr7_2:75392487-75392506 None:intergenic 40.0%
!! CCTTACTTTTGCTCAGAACA+AGG + chr7_2:75392484-75392503 Msa1076830:CDS 40.0%
GAATAGCTGCAAATCTTGCA+GGG - chr7_2:75392510-75392529 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG - chr7_2:75392511-75392530 None:intergenic 40.0%
CGTATTAGAGACCCTGTATA+TGG + chr7_2:75392631-75392650 Msa1076830:CDS 40.0%
ACTACACTTACTCACGTATC+TGG + chr7_2:75392785-75392804 Msa1076830:intron 40.0%
AGAAAAAGACAGGAGTAGTG+TGG - chr7_2:75393035-75393054 None:intergenic 40.0%
TAAGGCTCTTTGATGCTTCA+AGG + chr7_2:75393055-75393074 Msa1076830:intron 40.0%
AAGGCTCTTTGATGCTTCAA+GGG + chr7_2:75393056-75393075 Msa1076830:intron 40.0%
GATGACTCAAGTGAACTTTG+AGG - chr7_2:75393379-75393398 None:intergenic 40.0%
TCTTCAAATGGAACTAGCTC+TGG + chr7_2:75392394-75392413 Msa1076830:CDS 40.0%
! CAGGTGCACATTTTCTTCTA+AGG - chr7_2:75392450-75392469 None:intergenic 40.0%
! CCTTGTTCTGAGCAAAAGTA+AGG - chr7_2:75392487-75392506 None:intergenic 40.0%
!! CCTTACTTTTGCTCAGAACA+AGG + chr7_2:75392484-75392503 Msa1076830:CDS 40.0%
GAATAGCTGCAAATCTTGCA+GGG - chr7_2:75392510-75392529 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG - chr7_2:75392511-75392530 None:intergenic 40.0%
CGTATTAGAGACCCTGTATA+TGG + chr7_2:75392631-75392650 Msa1076830:CDS 40.0%
ACTACACTTACTCACGTATC+TGG + chr7_2:75392785-75392804 Msa1076830:intron 40.0%
AGAAAAAGACAGGAGTAGTG+TGG - chr7_2:75393035-75393054 None:intergenic 40.0%
TAAGGCTCTTTGATGCTTCA+AGG + chr7_2:75393055-75393074 Msa1076830:intron 40.0%
AAGGCTCTTTGATGCTTCAA+GGG + chr7_2:75393056-75393075 Msa1076830:intron 40.0%
GATGACTCAAGTGAACTTTG+AGG - chr7_2:75393379-75393398 None:intergenic 40.0%
!! AATGGAACTAGCTCTGGAAC+TGG + chr7_2:75392400-75392419 Msa1076830:CDS 45.0%
GAGAGACACAGCCATATACA+GGG - chr7_2:75392645-75392664 None:intergenic 45.0%
TGAGAGACACAGCCATATAC+AGG - chr7_2:75392646-75392665 None:intergenic 45.0%
CATAGCAGCAGCATGAATGA+TGG + chr7_2:75393406-75393425 Msa1076830:CDS 45.0%
!! AATGGAACTAGCTCTGGAAC+TGG + chr7_2:75392400-75392419 Msa1076830:CDS 45.0%
GAGAGACACAGCCATATACA+GGG - chr7_2:75392645-75392664 None:intergenic 45.0%
TGAGAGACACAGCCATATAC+AGG - chr7_2:75392646-75392665 None:intergenic 45.0%
CATAGCAGCAGCATGAATGA+TGG + chr7_2:75393406-75393425 Msa1076830:CDS 45.0%
!! TATATATTAAAAAAATAAAG+GGG - chr7_2:75392979-75392998 None:intergenic 5.0%
!! TTTAATATATATTAGAAATT+TGG + chr7_2:75392988-75393007 Msa1076830:intron 5.0%
!! TATATATTAAAAAAATAAAG+GGG - chr7_2:75392979-75392998 None:intergenic 5.0%
!! TTTAATATATATTAGAAATT+TGG + chr7_2:75392988-75393007 Msa1076830:intron 5.0%
! TCTGGAACTGGTTCTCCTTG+TGG + chr7_2:75392412-75392431 Msa1076830:CDS 50.0%
AGGAACTTGCATGCTCCACA+AGG - chr7_2:75392430-75392449 None:intergenic 50.0%
GCTTCACAACGTTCATGAGC+TGG - chr7_2:75392580-75392599 None:intergenic 50.0%
TATGCAGGTAGCATGCTTGC+AGG + chr7_2:75393216-75393235 Msa1076830:intron 50.0%
! TCTGGAACTGGTTCTCCTTG+TGG + chr7_2:75392412-75392431 Msa1076830:CDS 50.0%
AGGAACTTGCATGCTCCACA+AGG - chr7_2:75392430-75392449 None:intergenic 50.0%
GCTTCACAACGTTCATGAGC+TGG - chr7_2:75392580-75392599 None:intergenic 50.0%
TATGCAGGTAGCATGCTTGC+AGG + chr7_2:75393216-75393235 Msa1076830:intron 50.0%
GTTAGGTGTTCGACACGTGC+AGG + chr7_2:75392834-75392853 Msa1076830:intron 55.0%
GTTAGGTGTTCGACACGTGC+AGG + chr7_2:75392834-75392853 Msa1076830:intron 55.0%
AGGTGTTCGACACGTGCAGG+CGG + chr7_2:75392837-75392856 Msa1076830:intron 60.0%
AGGTGTTCGACACGTGCAGG+CGG + chr7_2:75392837-75392856 Msa1076830:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75392307 75393579 75392307 ID=Msa1076830;Name=Msa1076830
chr7_2 mRNA 75392307 75393579 75392307 ID=Msa1076830-mRNA-1;Parent=Msa1076830;Name=Msa1076830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|245
chr7_2 exon 75392307 75392687 75392307 ID=Msa1076830-mRNA-1:exon:17986;Parent=Msa1076830-mRNA-1
chr7_2 exon 75393223 75393579 75393223 ID=Msa1076830-mRNA-1:exon:17987;Parent=Msa1076830-mRNA-1
chr7_2 CDS 75392307 75392687 75392307 ID=Msa1076830-mRNA-1:cds;Parent=Msa1076830-mRNA-1
chr7_2 CDS 75393223 75393579 75393223 ID=Msa1076830-mRNA-1:cds;Parent=Msa1076830-mRNA-1
Gene Sequence

>Msa1076830

CAACAATTTTTATTCACTTTCTTTCACTTCTCACACGCACACATAACATCAAAAACAAAACACAACCTTTCTAATATCAATATGGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAGTTCCTTAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTATATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAATCTCAACTGTCACATAACATAGAGAATAATAATCAATGGACAGGAAACAATAATAATGTTGCTGGCACACAAGCAATGAATTATCCATTTTGTCCAACTTACATGAACCCTATATCTCCTCAAAGTTCACTTGAGTCATCAATTGATCATAGCAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGCAGAGAAGATTTCTCATTCCAAGGTTGTAATAATTATAAGAAAAGAATGTCACATAACAATAATAATGATCATGACTTGGGTGAATTGCAAGAAATAGCACTTAGGATGATGAGGAACTAA

Protein sequence

>Msa1076830

QQFLFTFFHFSHAHITSKTKHNLSNINMASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKSQLSHNIENNNQWTGNNNNVAGTQAMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQGCNNYKKRMSHNNNNDHDLGELQEIALRMMRN*