Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322540 | AAN10048.1 | 92.163 | 319 | 22 | 2 | 15 | 330 | 10 | 328 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322540 | sp|P36910|CHIE_BETVU | 52.145 | 303 | 133 | 6 | 1 | 301 | 1 | 293 | 4.15e-99 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195080 | Msa0322540 | 0.966131 | 1.636323e-125 | -8.615850e-47 |
| Msa0195100 | Msa0322540 | 0.878163 | 3.507458e-69 | -8.615850e-47 |
| Msa0195110 | Msa0322540 | 0.866115 | 3.608464e-65 | -8.615850e-47 |
| Msa0202800 | Msa0322540 | 0.861774 | 8.100255e-64 | -8.615850e-47 |
| Msa0230320 | Msa0322540 | 0.882614 | 8.985282e-71 | -8.615850e-47 |
| Msa0245900 | Msa0322540 | 0.966785 | 2.185223e-126 | -8.615850e-47 |
| Msa0284480 | Msa0322540 | 0.901813 | 1.832597e-78 | -8.615850e-47 |
| Msa0308630 | Msa0322540 | 0.885090 | 1.096980e-71 | -8.615850e-47 |
| Msa0322530 | Msa0322540 | 0.883344 | 4.859589e-71 | -8.615850e-47 |
| Msa0322540 | Msa0389770 | 0.871488 | 6.579078e-67 | -8.615850e-47 |
| Msa0322540 | Msa1423780 | 0.880330 | 6.001818e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322540 | MtrunA17_Chr2g0300141 | 90.000 | 330 | 32 | 1 | 1 | 330 | 1 | 329 | 0.0 | 602 |
| Msa0322540 | MtrunA17_Chr2g0300081 | 87.952 | 332 | 37 | 2 | 1 | 330 | 1 | 331 | 0.0 | 587 |
| Msa0322540 | MtrunA17_Chr2g0300101 | 86.970 | 330 | 41 | 2 | 1 | 330 | 1 | 328 | 0.0 | 564 |
| Msa0322540 | MtrunA17_Chr2g0300051 | 79.154 | 331 | 62 | 5 | 1 | 330 | 1 | 325 | 2.13e-175 | 489 |
| Msa0322540 | MtrunA17_Chr2g0300181 | 59.281 | 334 | 130 | 5 | 1 | 330 | 1 | 332 | 5.56e-136 | 389 |
| Msa0322540 | MtrunA17_Chr5g0418461 | 57.095 | 296 | 110 | 8 | 9 | 301 | 13 | 294 | 6.70e-103 | 303 |
| Msa0322540 | MtrunA17_Chr1g0202241 | 54.276 | 304 | 128 | 8 | 1 | 301 | 1 | 296 | 4.31e-101 | 299 |
| Msa0322540 | MtrunA17_Chr7g0240891 | 52.632 | 304 | 130 | 8 | 5 | 301 | 2 | 298 | 1.01e-99 | 296 |
| Msa0322540 | MtrunA17_Chr1g0202231 | 52.492 | 301 | 134 | 6 | 1 | 298 | 1 | 295 | 2.31e-98 | 293 |
| Msa0322540 | MtrunA17_Chr1g0202261 | 55.147 | 272 | 113 | 5 | 21 | 288 | 19 | 285 | 3.15e-95 | 285 |
| Msa0322540 | MtrunA17_Chr7g0275231 | 49.832 | 297 | 138 | 8 | 11 | 301 | 12 | 303 | 5.09e-90 | 271 |
| Msa0322540 | MtrunA17_Chr7g0274861 | 48.845 | 303 | 125 | 7 | 1 | 301 | 1 | 275 | 1.34e-88 | 266 |
| Msa0322540 | MtrunA17_Chr2g0300161 | 78.035 | 173 | 37 | 1 | 1 | 172 | 1 | 173 | 1.41e-86 | 258 |
| Msa0322540 | MtrunA17_Chr2g0331781 | 50.685 | 292 | 129 | 7 | 7 | 287 | 13 | 300 | 3.01e-84 | 258 |
| Msa0322540 | MtrunA17_Chr1g0202281 | 50.370 | 270 | 123 | 6 | 21 | 287 | 36 | 297 | 6.63e-84 | 256 |
| Msa0322540 | MtrunA17_Chr2g0300171 | 82.313 | 147 | 25 | 1 | 184 | 330 | 1 | 146 | 9.48e-83 | 247 |
| Msa0322540 | MtrunA17_Chr8g0361941 | 49.000 | 300 | 140 | 9 | 8 | 301 | 6 | 298 | 4.19e-82 | 251 |
| Msa0322540 | MtrunA17_Chr2g0300151 | 58.170 | 153 | 55 | 2 | 1 | 145 | 1 | 152 | 1.72e-53 | 172 |
| Msa0322540 | MtrunA17_Chr6g0459141 | 50.909 | 110 | 52 | 2 | 22 | 130 | 22 | 130 | 6.04e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322540 | AT5G24090.1 | 47.697 | 304 | 151 | 6 | 1 | 301 | 4 | 302 | 6.16e-91 | 274 |
Find 79 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATGAACACGGTATTATT+TGG | 0.228231 | 2_4:+25435454 | None:intergenic |
| AACTTTCTTAGTGGTCAATT+TGG | 0.254606 | 2_4:-25436884 | Msa0322540:CDS |
| TTGGCTTTCCTAAATGTCTT+TGG | 0.269153 | 2_4:-25437100 | Msa0322540:CDS |
| CTTGACAAAGCTATCAAAAC+TGG | 0.277903 | 2_4:-25435595 | Msa0322540:CDS |
| TTCCTCCTCCAAAGACATTT+AGG | 0.281897 | 2_4:+25437092 | None:intergenic |
| ATAGTTGGAAGTTGGTTTAA+TGG | 0.284816 | 2_4:+25435354 | None:intergenic |
| GTCAAAATCAATACCATCTA+AGG | 0.296854 | 2_4:+25436844 | None:intergenic |
| CTTGGAAGTGTTACCTTAGA+TGG | 0.298818 | 2_4:-25436857 | Msa0322540:CDS |
| AAGGAGGTACAAATCTTTAC+TGG | 0.304361 | 2_4:-25436817 | Msa0322540:CDS |
| ATTAAACCAACTTCCAACTA+TGG | 0.306183 | 2_4:-25435352 | Msa0322540:CDS |
| AACACAAAATGGATAGAAAA+AGG | 0.309689 | 2_4:-25437273 | None:intergenic |
| AGGTGCCATCTCCTAGGTTT+TGG | 0.325186 | 2_4:+25437164 | None:intergenic |
| ACCAGATGATCTCATTTCTA+AGG | 0.326123 | 2_4:-25435386 | Msa0322540:CDS |
| GTGGTGGCATTGCCATCTAC+TGG | 0.335903 | 2_4:-25437189 | Msa0322540:CDS |
| CTTTCGATCGGAGGTGCAAT+AGG | 0.351560 | 2_4:-25436965 | Msa0322540:CDS |
| CTCCATACTAACTTTCTTAG+TGG | 0.352431 | 2_4:-25436893 | Msa0322540:CDS |
| ATAAAACACTGTCAACAAAA+AGG | 0.366978 | 2_4:-25437001 | Msa0322540:CDS |
| GACCCAAGTTGGAACTTTGC+AGG | 0.370420 | 2_4:-25437067 | Msa0322540:CDS |
| TCTTAAAATCATGGAAAGAT+TGG | 0.373901 | 2_4:-25435492 | Msa0322540:CDS |
| ACCAAATAATACCGTGTTCA+TGG | 0.382839 | 2_4:-25435455 | Msa0322540:CDS |
| GTAATCTGGCATAAAACATT+GGG | 0.383173 | 2_4:+25435621 | None:intergenic |
| TAATTACAAGATTGTACTCT+TGG | 0.383216 | 2_4:-25437119 | Msa0322540:CDS |
| GACCACTAAGAAAGTTAGTA+TGG | 0.384451 | 2_4:+25436891 | None:intergenic |
| GCGTAAAATATGATTTAATT+CGG | 0.386935 | 2_4:+25435175 | None:intergenic |
| ACTATGGAGGAGTTATGCTT+TGG | 0.407448 | 2_4:-25435336 | Msa0322540:CDS |
| CTACATTGCTCTTAAAATCA+TGG | 0.423108 | 2_4:-25435501 | Msa0322540:CDS |
| CTATGGAGGAGTTATGCTTT+GGG | 0.427042 | 2_4:-25435335 | Msa0322540:CDS |
| TGATTACAGCTATCAGATAA+AGG | 0.427044 | 2_4:-25435287 | Msa0322540:CDS |
| ACCTTAGAAATGAGATCATC+TGG | 0.432094 | 2_4:+25435385 | None:intergenic |
| TGGTGGCATTGCCATCTACT+GGG | 0.446566 | 2_4:-25437188 | Msa0322540:CDS |
| GCTTTCCTAAATGTCTTTGG+AGG | 0.450110 | 2_4:-25437097 | Msa0322540:CDS |
| TGGGATAGATTTCATGATGT+TGG | 0.451538 | 2_4:-25435316 | Msa0322540:CDS |
| ACAATCTAAGACAACAAAAC+AGG | 0.458920 | 2_4:-25436772 | Msa0322540:intron |
| AAGCATAACTCCTCCATAGT+TGG | 0.475229 | 2_4:+25435339 | None:intergenic |
| ATGTCAAGGTGCCATCTCCT+AGG | 0.479456 | 2_4:+25437158 | None:intergenic |
| CAAGTTTCAGAGGCAATAGC+TGG | 0.480314 | 2_4:-25435229 | Msa0322540:CDS |
| CCACCACTAGGAGCTGCATT+AGG | 0.480850 | 2_4:+25435418 | None:intergenic |
| TTGCAGGTCATTGTGGTGAC+TGG | 0.481375 | 2_4:-25437051 | Msa0322540:CDS |
| ACTCCTCCATAGTTGGAAGT+TGG | 0.484326 | 2_4:+25435346 | None:intergenic |
| TTTGTTGTCTTAGATTGTCA+AGG | 0.485852 | 2_4:+25436777 | None:intergenic |
| GCTTTGTCAAGGTAGTAATC+TGG | 0.487955 | 2_4:+25435607 | None:intergenic |
| TTCCTAAATGTCTTTGGAGG+AGG | 0.495140 | 2_4:-25437094 | Msa0322540:CDS |
| TTTACTGGGATGACCTTGCT+AGG | 0.501225 | 2_4:-25436802 | Msa0322540:CDS |
| TGACCTGCAAAGTTCCAACT+TGG | 0.502084 | 2_4:+25437064 | None:intergenic |
| CCAAATAATACCGTGTTCAT+GGG | 0.512696 | 2_4:-25435454 | Msa0322540:CDS |
| AGTAATCTGGCATAAAACAT+TGG | 0.515532 | 2_4:+25435620 | None:intergenic |
| TTGGAAGTTGGTTTAATGGA+AGG | 0.522478 | 2_4:+25435358 | None:intergenic |
| GGAGCTGCATTAGGTGCTGC+TGG | 0.526335 | 2_4:+25435427 | None:intergenic |
| TTATATCATATTGACATGGA+GGG | 0.540692 | 2_4:+25435536 | None:intergenic |
| TGAAGATGCTTTGATAGTGA+AGG | 0.540737 | 2_4:+25437213 | None:intergenic |
| GAAGATGCTTTGATAGTGAA+GGG | 0.554870 | 2_4:+25437214 | None:intergenic |
| TATGATTTAATTCGGAAACA+TGG | 0.556912 | 2_4:+25435183 | None:intergenic |
| AGTGGTCAATTTGGTCCACT+TGG | 0.566066 | 2_4:-25436875 | Msa0322540:CDS |
| TTGACATCAACATGCAACAC+TGG | 0.577870 | 2_4:-25437142 | Msa0322540:CDS |
| TTACTGGGATGACCTTGCTA+GGG | 0.587273 | 2_4:-25436801 | Msa0322540:CDS |
| AGGAGGTACAAATCTTTACT+GGG | 0.587554 | 2_4:-25436816 | Msa0322540:CDS |
| GAGGAGGAAGAGACCCAAGT+TGG | 0.591012 | 2_4:-25437078 | Msa0322540:CDS |
| GATTGTCAAGGTCCCTAGCA+AGG | 0.595500 | 2_4:+25436789 | None:intergenic |
| TTTATATCATATTGACATGG+AGG | 0.598528 | 2_4:+25435535 | None:intergenic |
| ATCTACTGGGGCCAAAACCT+AGG | 0.601014 | 2_4:-25437175 | Msa0322540:CDS |
| TGCTGGTAGTCCCATGAACA+CGG | 0.611631 | 2_4:+25435444 | None:intergenic |
| ATCAAAGCATCTTCAAGTGG+TGG | 0.612068 | 2_4:-25437205 | Msa0322540:CDS |
| GACCTGCAAAGTTCCAACTT+GGG | 0.612156 | 2_4:+25437065 | None:intergenic |
| TGGGGCCAAAACCTAGGAGA+TGG | 0.618215 | 2_4:-25437169 | Msa0322540:CDS |
| TTCTGGTGAGCTAAGAGTGT+AGG | 0.618334 | 2_4:+25436940 | None:intergenic |
| AGTGTTGCATGTTGATGTCA+AGG | 0.626759 | 2_4:+25437144 | None:intergenic |
| TTGACAAAGCTATCAAAACT+GGG | 0.637442 | 2_4:-25435594 | Msa0322540:CDS |
| ACTATCAAAGCATCTTCAAG+TGG | 0.643897 | 2_4:-25437208 | Msa0322540:CDS |
| TGGAACTTTGCAGGTCATTG+TGG | 0.646397 | 2_4:-25437058 | Msa0322540:CDS |
| AAACCAACTTCCAACTATGG+AGG | 0.653029 | 2_4:-25435349 | Msa0322540:CDS |
| GCACCTAATGCAGCTCCTAG+TGG | 0.656531 | 2_4:-25435421 | Msa0322540:CDS |
| GGTGGCATTGCCATCTACTG+GGG | 0.662894 | 2_4:-25437187 | Msa0322540:CDS |
| CCTAATGCAGCTCCTAGTGG+TGG | 0.665138 | 2_4:-25435418 | Msa0322540:CDS |
| CACTAAGAAAGTTAGTATGG+AGG | 0.672810 | 2_4:+25436894 | None:intergenic |
| TAATCTGGCATAAAACATTG+GGG | 0.688163 | 2_4:+25435622 | None:intergenic |
| GGTGGTATATAACCACCACT+AGG | 0.701616 | 2_4:+25435406 | None:intergenic |
| ATATTGTTAAGACTAACAGA+AGG | 0.710230 | 2_4:+25437239 | None:intergenic |
| TCTAAGGTAACACTTCCAAG+TGG | 0.714737 | 2_4:+25436860 | None:intergenic |
| TTAGAAATGAGATCATCTGG+TGG | 0.728954 | 2_4:+25435388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCTTTGAAAAAATA+TGG | + | chr2_4:25436127-25436146 | None:intergenic | 10.0% |
| !!! | TATTTTTCTTTGAAAAAATA+TGG | + | chr2_4:25436127-25436146 | None:intergenic | 10.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | - | chr2_4:25436131-25436150 | Msa0322540:intron | 15.0% |
| !!! | TATAAGAGAAAGTATAATAT+AGG | - | chr2_4:25436240-25436259 | Msa0322540:intron | 15.0% |
| !!! | TAATTTTGTTTTATTAACAG+TGG | - | chr2_4:25436539-25436558 | Msa0322540:intron | 15.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | - | chr2_4:25436131-25436150 | Msa0322540:intron | 15.0% |
| !!! | TATAAGAGAAAGTATAATAT+AGG | - | chr2_4:25436240-25436259 | Msa0322540:intron | 15.0% |
| !!! | TAATTTTGTTTTATTAACAG+TGG | - | chr2_4:25436539-25436558 | Msa0322540:intron | 15.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | + | chr2_4:25435854-25435873 | None:intergenic | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | + | chr2_4:25435971-25435990 | None:intergenic | 20.0% |
| !! | AAAAAATATGGTTGTTCATT+AGG | + | chr2_4:25436115-25436134 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | - | chr2_4:25436186-25436205 | Msa0322540:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | + | chr2_4:25436223-25436242 | None:intergenic | 20.0% |
| !! | GAATGATAAACATTATATGA+GGG | + | chr2_4:25436706-25436725 | None:intergenic | 20.0% |
| !! | TGAATGATAAACATTATATG+AGG | + | chr2_4:25436707-25436726 | None:intergenic | 20.0% |
| !!! | CTTTTTATATCATATTGACA+TGG | + | chr2_4:25436925-25436944 | None:intergenic | 20.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | + | chr2_4:25435854-25435873 | None:intergenic | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | + | chr2_4:25435971-25435990 | None:intergenic | 20.0% |
| !! | AAAAAATATGGTTGTTCATT+AGG | + | chr2_4:25436115-25436134 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | - | chr2_4:25436186-25436205 | Msa0322540:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | + | chr2_4:25436223-25436242 | None:intergenic | 20.0% |
| !! | GAATGATAAACATTATATGA+GGG | + | chr2_4:25436706-25436725 | None:intergenic | 20.0% |
| !! | TGAATGATAAACATTATATG+AGG | + | chr2_4:25436707-25436726 | None:intergenic | 20.0% |
| !!! | CTTTTTATATCATATTGACA+TGG | + | chr2_4:25436925-25436944 | None:intergenic | 20.0% |
| ! | ATATTGTTAAGACTAACAGA+AGG | + | chr2_4:25435218-25435237 | None:intergenic | 25.0% |
| ! | TAATTACAAGATTGTACTCT+TGG | - | chr2_4:25435335-25435354 | Msa0322540:CDS | 25.0% |
| !!! | TTGTTGACAGTGTTTTATTT+CGG | + | chr2_4:25435451-25435470 | None:intergenic | 25.0% |
| ! | ATAAAACACTGTCAACAAAA+AGG | - | chr2_4:25435453-25435472 | Msa0322540:CDS | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | + | chr2_4:25436097-25436116 | None:intergenic | 25.0% |
| ! | CTAAACAAAAATTCCACTTT+AGG | + | chr2_4:25436303-25436322 | None:intergenic | 25.0% |
| !!! | CTAAAGTGGAATTTTTGTTT+AGG | - | chr2_4:25436301-25436320 | Msa0322540:intron | 25.0% |
| !! | TAGTTAGTGGTTTGAAATAA+GGG | - | chr2_4:25436571-25436590 | Msa0322540:intron | 25.0% |
| !!! | AAGGGTTGATTTGTTAATTA+GGG | + | chr2_4:25436778-25436797 | None:intergenic | 25.0% |
| !!! | AAAGGGTTGATTTGTTAATT+AGG | + | chr2_4:25436779-25436798 | None:intergenic | 25.0% |
| ! | TTATATCATATTGACATGGA+GGG | + | chr2_4:25436921-25436940 | None:intergenic | 25.0% |
| ! | TTTATATCATATTGACATGG+AGG | + | chr2_4:25436922-25436941 | None:intergenic | 25.0% |
| ! | TCTTAAAATCATGGAAAGAT+TGG | - | chr2_4:25436962-25436981 | Msa0322540:CDS | 25.0% |
| ! | ATATTGTTAAGACTAACAGA+AGG | + | chr2_4:25435218-25435237 | None:intergenic | 25.0% |
| ! | TAATTACAAGATTGTACTCT+TGG | - | chr2_4:25435335-25435354 | Msa0322540:CDS | 25.0% |
| !!! | TTGTTGACAGTGTTTTATTT+CGG | + | chr2_4:25435451-25435470 | None:intergenic | 25.0% |
| ! | ATAAAACACTGTCAACAAAA+AGG | - | chr2_4:25435453-25435472 | Msa0322540:CDS | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | + | chr2_4:25436097-25436116 | None:intergenic | 25.0% |
| ! | CTAAACAAAAATTCCACTTT+AGG | + | chr2_4:25436303-25436322 | None:intergenic | 25.0% |
| !!! | CTAAAGTGGAATTTTTGTTT+AGG | - | chr2_4:25436301-25436320 | Msa0322540:intron | 25.0% |
| !! | TAGTTAGTGGTTTGAAATAA+GGG | - | chr2_4:25436571-25436590 | Msa0322540:intron | 25.0% |
| !!! | AAGGGTTGATTTGTTAATTA+GGG | + | chr2_4:25436778-25436797 | None:intergenic | 25.0% |
| !!! | AAAGGGTTGATTTGTTAATT+AGG | + | chr2_4:25436779-25436798 | None:intergenic | 25.0% |
| ! | TTATATCATATTGACATGGA+GGG | + | chr2_4:25436921-25436940 | None:intergenic | 25.0% |
| ! | TTTATATCATATTGACATGG+AGG | + | chr2_4:25436922-25436941 | None:intergenic | 25.0% |
| ! | TCTTAAAATCATGGAAAGAT+TGG | - | chr2_4:25436962-25436981 | Msa0322540:CDS | 25.0% |
| !!! | TGTTGACAGTGTTTTATTTC+GGG | + | chr2_4:25435450-25435469 | None:intergenic | 30.0% |
| ! | GTCAAAGTTTTACTTTCGAT+CGG | - | chr2_4:25435477-25435496 | Msa0322540:CDS | 30.0% |
| AACTTTCTTAGTGGTCAATT+TGG | - | chr2_4:25435570-25435589 | Msa0322540:CDS | 30.0% | |
| GTCAAAATCAATACCATCTA+AGG | + | chr2_4:25435613-25435632 | None:intergenic | 30.0% | |
| !!! | GGTATTGATTTTGACATTGA+AGG | - | chr2_4:25435618-25435637 | Msa0322540:CDS | 30.0% |
| !! | ATTGATTTTGACATTGAAGG+AGG | - | chr2_4:25435621-25435640 | Msa0322540:CDS | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | + | chr2_4:25435680-25435699 | None:intergenic | 30.0% |
| ! | ACAATCTAAGACAACAAAAC+AGG | - | chr2_4:25435682-25435701 | Msa0322540:intron | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | + | chr2_4:25435766-25435785 | None:intergenic | 30.0% |
| !! | AATGTTAACTTGTGCTCTTA+GGG | - | chr2_4:25436263-25436282 | Msa0322540:intron | 30.0% |
| TATGCTAACTTGAGTTCTTA+GGG | + | chr2_4:25436411-25436430 | None:intergenic | 30.0% | |
| TTATGCTAACTTGAGTTCTT+AGG | + | chr2_4:25436412-25436431 | None:intergenic | 30.0% | |
| ! | TAGGAGTATAGTTTATGAAG+TGG | + | chr2_4:25436450-25436469 | None:intergenic | 30.0% |
| AGAAATGTTCTACTTCTACT+AGG | + | chr2_4:25436469-25436488 | None:intergenic | 30.0% | |
| ! | GTAGTTAGTGGTTTGAAATA+AGG | - | chr2_4:25436570-25436589 | Msa0322540:intron | 30.0% |
| ! | AGTTAGTGGTTTGAAATAAG+GGG | - | chr2_4:25436572-25436591 | Msa0322540:intron | 30.0% |
| TTATATGAGGGCAATTTCTA+CGG | + | chr2_4:25436694-25436713 | None:intergenic | 30.0% | |
| TAATCTGGCATAAAACATTG+GGG | + | chr2_4:25436835-25436854 | None:intergenic | 30.0% | |
| GTAATCTGGCATAAAACATT+GGG | + | chr2_4:25436836-25436855 | None:intergenic | 30.0% | |
| AGTAATCTGGCATAAAACAT+TGG | + | chr2_4:25436837-25436856 | None:intergenic | 30.0% | |
| TTGACAAAGCTATCAAAACT+GGG | - | chr2_4:25436860-25436879 | Msa0322540:CDS | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | - | chr2_4:25436953-25436972 | Msa0322540:CDS | 30.0% | |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | + | chr2_4:25437103-25437122 | None:intergenic | 30.0% |
| ATTAAACCAACTTCCAACTA+TGG | - | chr2_4:25437102-25437121 | Msa0322540:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | - | chr2_4:25437167-25437186 | Msa0322540:CDS | 30.0% | |
| !!! | TTTTAAGACACAAGTTTCAG+AGG | - | chr2_4:25437215-25437234 | Msa0322540:CDS | 30.0% |
| !!! | TGTTGACAGTGTTTTATTTC+GGG | + | chr2_4:25435450-25435469 | None:intergenic | 30.0% |
| ! | GTCAAAGTTTTACTTTCGAT+CGG | - | chr2_4:25435477-25435496 | Msa0322540:CDS | 30.0% |
| AACTTTCTTAGTGGTCAATT+TGG | - | chr2_4:25435570-25435589 | Msa0322540:CDS | 30.0% | |
| GTCAAAATCAATACCATCTA+AGG | + | chr2_4:25435613-25435632 | None:intergenic | 30.0% | |
| !!! | GGTATTGATTTTGACATTGA+AGG | - | chr2_4:25435618-25435637 | Msa0322540:CDS | 30.0% |
| !! | ATTGATTTTGACATTGAAGG+AGG | - | chr2_4:25435621-25435640 | Msa0322540:CDS | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | + | chr2_4:25435680-25435699 | None:intergenic | 30.0% |
| ! | ACAATCTAAGACAACAAAAC+AGG | - | chr2_4:25435682-25435701 | Msa0322540:intron | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | + | chr2_4:25435766-25435785 | None:intergenic | 30.0% |
| !! | AATGTTAACTTGTGCTCTTA+GGG | - | chr2_4:25436263-25436282 | Msa0322540:intron | 30.0% |
| TATGCTAACTTGAGTTCTTA+GGG | + | chr2_4:25436411-25436430 | None:intergenic | 30.0% | |
| TTATGCTAACTTGAGTTCTT+AGG | + | chr2_4:25436412-25436431 | None:intergenic | 30.0% | |
| ! | TAGGAGTATAGTTTATGAAG+TGG | + | chr2_4:25436450-25436469 | None:intergenic | 30.0% |
| AGAAATGTTCTACTTCTACT+AGG | + | chr2_4:25436469-25436488 | None:intergenic | 30.0% | |
| ! | GTAGTTAGTGGTTTGAAATA+AGG | - | chr2_4:25436570-25436589 | Msa0322540:intron | 30.0% |
| ! | AGTTAGTGGTTTGAAATAAG+GGG | - | chr2_4:25436572-25436591 | Msa0322540:intron | 30.0% |
| TTATATGAGGGCAATTTCTA+CGG | + | chr2_4:25436694-25436713 | None:intergenic | 30.0% | |
| TAATCTGGCATAAAACATTG+GGG | + | chr2_4:25436835-25436854 | None:intergenic | 30.0% | |
| GTAATCTGGCATAAAACATT+GGG | + | chr2_4:25436836-25436855 | None:intergenic | 30.0% | |
| AGTAATCTGGCATAAAACAT+TGG | + | chr2_4:25436837-25436856 | None:intergenic | 30.0% | |
| TTGACAAAGCTATCAAAACT+GGG | - | chr2_4:25436860-25436879 | Msa0322540:CDS | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | - | chr2_4:25436953-25436972 | Msa0322540:CDS | 30.0% | |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | + | chr2_4:25437103-25437122 | None:intergenic | 30.0% |
| ATTAAACCAACTTCCAACTA+TGG | - | chr2_4:25437102-25437121 | Msa0322540:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | - | chr2_4:25437167-25437186 | Msa0322540:CDS | 30.0% | |
| !!! | TTTTAAGACACAAGTTTCAG+AGG | - | chr2_4:25437215-25437234 | Msa0322540:CDS | 30.0% |
| !! | GAAGATGCTTTGATAGTGAA+GGG | + | chr2_4:25435243-25435262 | None:intergenic | 35.0% |
| !! | TGAAGATGCTTTGATAGTGA+AGG | + | chr2_4:25435244-25435263 | None:intergenic | 35.0% |
| ! | ACTATCAAAGCATCTTCAAG+TGG | - | chr2_4:25435246-25435265 | Msa0322540:CDS | 35.0% |
| ! | TTGGCTTTCCTAAATGTCTT+TGG | - | chr2_4:25435354-25435373 | Msa0322540:CDS | 35.0% |
| ! | AAAGTTTTACTTTCGATCGG+AGG | - | chr2_4:25435480-25435499 | Msa0322540:CDS | 35.0% |
| !!! | GCAACATTTTTAGCATCTTC+TGG | + | chr2_4:25435534-25435553 | None:intergenic | 35.0% |
| CACTAAGAAAGTTAGTATGG+AGG | + | chr2_4:25435563-25435582 | None:intergenic | 35.0% | |
| CTCCATACTAACTTTCTTAG+TGG | - | chr2_4:25435561-25435580 | Msa0322540:CDS | 35.0% | |
| GACCACTAAGAAAGTTAGTA+TGG | + | chr2_4:25435566-25435585 | None:intergenic | 35.0% | |
| ! | AAGGAGGTACAAATCTTTAC+TGG | - | chr2_4:25435637-25435656 | Msa0322540:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | - | chr2_4:25435638-25435657 | Msa0322540:CDS | 35.0% |
| ! | AAGATGAAGAACCCTGTTTT+GGG | + | chr2_4:25435905-25435924 | None:intergenic | 35.0% |
| ATGACATGGAGATATCAGAA+AGG | + | chr2_4:25435957-25435976 | None:intergenic | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | + | chr2_4:25436019-25436038 | None:intergenic | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | - | chr2_4:25436017-25436036 | Msa0322540:intron | 35.0% | |
| !! | GAATGTTAACTTGTGCTCTT+AGG | - | chr2_4:25436262-25436281 | Msa0322540:intron | 35.0% |
| ACATGTTAAGGAACCTAAAG+TGG | - | chr2_4:25436287-25436306 | Msa0322540:intron | 35.0% | |
| GTGGTTAATAGAGTAGTTAG+TGG | - | chr2_4:25436558-25436577 | Msa0322540:intron | 35.0% | |
| AAGTACCTGCAAGAGATAAA+GGG | + | chr2_4:25436796-25436815 | None:intergenic | 35.0% | |
| ! | AAAGTACCTGCAAGAGATAA+AGG | + | chr2_4:25436797-25436816 | None:intergenic | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | + | chr2_4:25436861-25436880 | None:intergenic | 35.0% |
| CTTGACAAAGCTATCAAAAC+TGG | - | chr2_4:25436859-25436878 | Msa0322540:CDS | 35.0% | |
| ACCAAATAATACCGTGTTCA+TGG | - | chr2_4:25436999-25437018 | Msa0322540:CDS | 35.0% | |
| CCAAATAATACCGTGTTCAT+GGG | - | chr2_4:25437000-25437019 | Msa0322540:CDS | 35.0% | |
| TTAGAAATGAGATCATCTGG+TGG | + | chr2_4:25437069-25437088 | None:intergenic | 35.0% | |
| ACCAGATGATCTCATTTCTA+AGG | - | chr2_4:25437068-25437087 | Msa0322540:CDS | 35.0% | |
| ACCTTAGAAATGAGATCATC+TGG | + | chr2_4:25437072-25437091 | None:intergenic | 35.0% | |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | + | chr2_4:25437099-25437118 | None:intergenic | 35.0% |
| TGGGATAGATTTCATGATGT+TGG | - | chr2_4:25437138-25437157 | Msa0322540:CDS | 35.0% | |
| !! | GAAGATGCTTTGATAGTGAA+GGG | + | chr2_4:25435243-25435262 | None:intergenic | 35.0% |
| !! | TGAAGATGCTTTGATAGTGA+AGG | + | chr2_4:25435244-25435263 | None:intergenic | 35.0% |
| ! | ACTATCAAAGCATCTTCAAG+TGG | - | chr2_4:25435246-25435265 | Msa0322540:CDS | 35.0% |
| ! | TTGGCTTTCCTAAATGTCTT+TGG | - | chr2_4:25435354-25435373 | Msa0322540:CDS | 35.0% |
| ! | AAAGTTTTACTTTCGATCGG+AGG | - | chr2_4:25435480-25435499 | Msa0322540:CDS | 35.0% |
| !!! | GCAACATTTTTAGCATCTTC+TGG | + | chr2_4:25435534-25435553 | None:intergenic | 35.0% |
| CACTAAGAAAGTTAGTATGG+AGG | + | chr2_4:25435563-25435582 | None:intergenic | 35.0% | |
| CTCCATACTAACTTTCTTAG+TGG | - | chr2_4:25435561-25435580 | Msa0322540:CDS | 35.0% | |
| GACCACTAAGAAAGTTAGTA+TGG | + | chr2_4:25435566-25435585 | None:intergenic | 35.0% | |
| ! | AAGGAGGTACAAATCTTTAC+TGG | - | chr2_4:25435637-25435656 | Msa0322540:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | - | chr2_4:25435638-25435657 | Msa0322540:CDS | 35.0% |
| ! | AAGATGAAGAACCCTGTTTT+GGG | + | chr2_4:25435905-25435924 | None:intergenic | 35.0% |
| ATGACATGGAGATATCAGAA+AGG | + | chr2_4:25435957-25435976 | None:intergenic | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | + | chr2_4:25436019-25436038 | None:intergenic | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | - | chr2_4:25436017-25436036 | Msa0322540:intron | 35.0% | |
| !! | GAATGTTAACTTGTGCTCTT+AGG | - | chr2_4:25436262-25436281 | Msa0322540:intron | 35.0% |
| ACATGTTAAGGAACCTAAAG+TGG | - | chr2_4:25436287-25436306 | Msa0322540:intron | 35.0% | |
| GTGGTTAATAGAGTAGTTAG+TGG | - | chr2_4:25436558-25436577 | Msa0322540:intron | 35.0% | |
| AAGTACCTGCAAGAGATAAA+GGG | + | chr2_4:25436796-25436815 | None:intergenic | 35.0% | |
| ! | AAAGTACCTGCAAGAGATAA+AGG | + | chr2_4:25436797-25436816 | None:intergenic | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | + | chr2_4:25436861-25436880 | None:intergenic | 35.0% |
| CTTGACAAAGCTATCAAAAC+TGG | - | chr2_4:25436859-25436878 | Msa0322540:CDS | 35.0% | |
| ACCAAATAATACCGTGTTCA+TGG | - | chr2_4:25436999-25437018 | Msa0322540:CDS | 35.0% | |
| CCAAATAATACCGTGTTCAT+GGG | - | chr2_4:25437000-25437019 | Msa0322540:CDS | 35.0% | |
| TTAGAAATGAGATCATCTGG+TGG | + | chr2_4:25437069-25437088 | None:intergenic | 35.0% | |
| ACCAGATGATCTCATTTCTA+AGG | - | chr2_4:25437068-25437087 | Msa0322540:CDS | 35.0% | |
| ACCTTAGAAATGAGATCATC+TGG | + | chr2_4:25437072-25437091 | None:intergenic | 35.0% | |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | + | chr2_4:25437099-25437118 | None:intergenic | 35.0% |
| TGGGATAGATTTCATGATGT+TGG | - | chr2_4:25437138-25437157 | Msa0322540:CDS | 35.0% | |
| ! | ATCAAAGCATCTTCAAGTGG+TGG | - | chr2_4:25435249-25435268 | Msa0322540:CDS | 40.0% |
| AGTGTTGCATGTTGATGTCA+AGG | + | chr2_4:25435313-25435332 | None:intergenic | 40.0% | |
| TTGACATCAACATGCAACAC+TGG | - | chr2_4:25435312-25435331 | Msa0322540:CDS | 40.0% | |
| GCTTTCCTAAATGTCTTTGG+AGG | - | chr2_4:25435357-25435376 | Msa0322540:CDS | 40.0% | |
| ! | TTCCTAAATGTCTTTGGAGG+AGG | - | chr2_4:25435360-25435379 | Msa0322540:CDS | 40.0% |
| TTCCTCCTCCAAAGACATTT+AGG | + | chr2_4:25435365-25435384 | None:intergenic | 40.0% | |
| ! | TCTAAGGTAACACTTCCAAG+TGG | + | chr2_4:25435597-25435616 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | - | chr2_4:25435597-25435616 | Msa0322540:CDS | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | + | chr2_4:25435906-25435925 | None:intergenic | 40.0% |
| GCGTAAAGAATAAGGTTGCT+TGG | - | chr2_4:25436025-25436044 | Msa0322540:intron | 40.0% | |
| AGACCAAAGAAACTGGCATA+TGG | - | chr2_4:25436049-25436068 | Msa0322540:intron | 40.0% | |
| AAGCCATATGCCAGTTTCTT+TGG | + | chr2_4:25436055-25436074 | None:intergenic | 40.0% | |
| AAAGAAACTGGCATATGGCT+TGG | - | chr2_4:25436054-25436073 | Msa0322540:intron | 40.0% | |
| AAGAAACTGGCATATGGCTT+GGG | - | chr2_4:25436055-25436074 | Msa0322540:intron | 40.0% | |
| AAAACGTGGTGTCTTGTCTT+TGG | + | chr2_4:25436083-25436102 | None:intergenic | 40.0% | |
| ATCAACCCTTTATCTCTTGC+AGG | - | chr2_4:25436788-25436807 | Msa0322540:CDS | 40.0% | |
| ! | CAGGTACTTTTACTTGTCTG+CGG | - | chr2_4:25436807-25436826 | Msa0322540:CDS | 40.0% |
| GCTTTGTCAAGGTAGTAATC+TGG | + | chr2_4:25436850-25436869 | None:intergenic | 40.0% | |
| CCCATGAACACGGTATTATT+TGG | + | chr2_4:25437003-25437022 | None:intergenic | 40.0% | |
| AAACCAACTTCCAACTATGG+AGG | - | chr2_4:25437105-25437124 | Msa0322540:CDS | 40.0% | |
| AAGCATAACTCCTCCATAGT+TGG | + | chr2_4:25437118-25437137 | None:intergenic | 40.0% | |
| ACTATGGAGGAGTTATGCTT+TGG | - | chr2_4:25437118-25437137 | Msa0322540:CDS | 40.0% | |
| CTATGGAGGAGTTATGCTTT+GGG | - | chr2_4:25437119-25437138 | Msa0322540:CDS | 40.0% | |
| ! | ATCAAAGCATCTTCAAGTGG+TGG | - | chr2_4:25435249-25435268 | Msa0322540:CDS | 40.0% |
| AGTGTTGCATGTTGATGTCA+AGG | + | chr2_4:25435313-25435332 | None:intergenic | 40.0% | |
| TTGACATCAACATGCAACAC+TGG | - | chr2_4:25435312-25435331 | Msa0322540:CDS | 40.0% | |
| GCTTTCCTAAATGTCTTTGG+AGG | - | chr2_4:25435357-25435376 | Msa0322540:CDS | 40.0% | |
| ! | TTCCTAAATGTCTTTGGAGG+AGG | - | chr2_4:25435360-25435379 | Msa0322540:CDS | 40.0% |
| TTCCTCCTCCAAAGACATTT+AGG | + | chr2_4:25435365-25435384 | None:intergenic | 40.0% | |
| ! | TCTAAGGTAACACTTCCAAG+TGG | + | chr2_4:25435597-25435616 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | - | chr2_4:25435597-25435616 | Msa0322540:CDS | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | + | chr2_4:25435906-25435925 | None:intergenic | 40.0% |
| GCGTAAAGAATAAGGTTGCT+TGG | - | chr2_4:25436025-25436044 | Msa0322540:intron | 40.0% | |
| AGACCAAAGAAACTGGCATA+TGG | - | chr2_4:25436049-25436068 | Msa0322540:intron | 40.0% | |
| AAGCCATATGCCAGTTTCTT+TGG | + | chr2_4:25436055-25436074 | None:intergenic | 40.0% | |
| AAAGAAACTGGCATATGGCT+TGG | - | chr2_4:25436054-25436073 | Msa0322540:intron | 40.0% | |
| AAGAAACTGGCATATGGCTT+GGG | - | chr2_4:25436055-25436074 | Msa0322540:intron | 40.0% | |
| AAAACGTGGTGTCTTGTCTT+TGG | + | chr2_4:25436083-25436102 | None:intergenic | 40.0% | |
| ATCAACCCTTTATCTCTTGC+AGG | - | chr2_4:25436788-25436807 | Msa0322540:CDS | 40.0% | |
| ! | CAGGTACTTTTACTTGTCTG+CGG | - | chr2_4:25436807-25436826 | Msa0322540:CDS | 40.0% |
| GCTTTGTCAAGGTAGTAATC+TGG | + | chr2_4:25436850-25436869 | None:intergenic | 40.0% | |
| CCCATGAACACGGTATTATT+TGG | + | chr2_4:25437003-25437022 | None:intergenic | 40.0% | |
| AAACCAACTTCCAACTATGG+AGG | - | chr2_4:25437105-25437124 | Msa0322540:CDS | 40.0% | |
| AAGCATAACTCCTCCATAGT+TGG | + | chr2_4:25437118-25437137 | None:intergenic | 40.0% | |
| ACTATGGAGGAGTTATGCTT+TGG | - | chr2_4:25437118-25437137 | Msa0322540:CDS | 40.0% | |
| CTATGGAGGAGTTATGCTTT+GGG | - | chr2_4:25437119-25437138 | Msa0322540:CDS | 40.0% | |
| GACCTGCAAAGTTCCAACTT+GGG | + | chr2_4:25435392-25435411 | None:intergenic | 45.0% | |
| TGACCTGCAAAGTTCCAACT+TGG | + | chr2_4:25435393-25435412 | None:intergenic | 45.0% | |
| TGGAACTTTGCAGGTCATTG+TGG | - | chr2_4:25435396-25435415 | Msa0322540:CDS | 45.0% | |
| !! | CGGGTTCGAGTTTTGTACAA+GGG | + | chr2_4:25435431-25435450 | None:intergenic | 45.0% |
| !! | TCGGGTTCGAGTTTTGTACA+AGG | + | chr2_4:25435432-25435451 | None:intergenic | 45.0% |
| ! | TTCTGGTGAGCTAAGAGTGT+AGG | + | chr2_4:25435517-25435536 | None:intergenic | 45.0% |
| AGTGGTCAATTTGGTCCACT+TGG | - | chr2_4:25435579-25435598 | Msa0322540:CDS | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | - | chr2_4:25435652-25435671 | Msa0322540:intron | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | - | chr2_4:25435653-25435672 | Msa0322540:intron | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | - | chr2_4:25435890-25435909 | Msa0322540:intron | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | - | chr2_4:25435891-25435910 | Msa0322540:intron | 45.0% | |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | + | chr2_4:25435899-25435918 | None:intergenic | 45.0% |
| GCTTGGTAGACCAAAGAAAC+TGG | - | chr2_4:25436042-25436061 | Msa0322540:intron | 45.0% | |
| TGCTCTTAGGGCACATGTTA+AGG | - | chr2_4:25436275-25436294 | Msa0322540:intron | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | + | chr2_4:25437051-25437070 | None:intergenic | 45.0% | |
| ACTCCTCCATAGTTGGAAGT+TGG | + | chr2_4:25437111-25437130 | None:intergenic | 45.0% | |
| CAAGTTTCAGAGGCAATAGC+TGG | - | chr2_4:25437225-25437244 | Msa0322540:CDS | 45.0% | |
| GACCTGCAAAGTTCCAACTT+GGG | + | chr2_4:25435392-25435411 | None:intergenic | 45.0% | |
| TGACCTGCAAAGTTCCAACT+TGG | + | chr2_4:25435393-25435412 | None:intergenic | 45.0% | |
| TGGAACTTTGCAGGTCATTG+TGG | - | chr2_4:25435396-25435415 | Msa0322540:CDS | 45.0% | |
| !! | CGGGTTCGAGTTTTGTACAA+GGG | + | chr2_4:25435431-25435450 | None:intergenic | 45.0% |
| !! | TCGGGTTCGAGTTTTGTACA+AGG | + | chr2_4:25435432-25435451 | None:intergenic | 45.0% |
| ! | TTCTGGTGAGCTAAGAGTGT+AGG | + | chr2_4:25435517-25435536 | None:intergenic | 45.0% |
| AGTGGTCAATTTGGTCCACT+TGG | - | chr2_4:25435579-25435598 | Msa0322540:CDS | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | - | chr2_4:25435652-25435671 | Msa0322540:intron | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | - | chr2_4:25435653-25435672 | Msa0322540:intron | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | - | chr2_4:25435890-25435909 | Msa0322540:intron | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | - | chr2_4:25435891-25435910 | Msa0322540:intron | 45.0% | |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | + | chr2_4:25435899-25435918 | None:intergenic | 45.0% |
| GCTTGGTAGACCAAAGAAAC+TGG | - | chr2_4:25436042-25436061 | Msa0322540:intron | 45.0% | |
| TGCTCTTAGGGCACATGTTA+AGG | - | chr2_4:25436275-25436294 | Msa0322540:intron | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | + | chr2_4:25437051-25437070 | None:intergenic | 45.0% | |
| ACTCCTCCATAGTTGGAAGT+TGG | + | chr2_4:25437111-25437130 | None:intergenic | 45.0% | |
| CAAGTTTCAGAGGCAATAGC+TGG | - | chr2_4:25437225-25437244 | Msa0322540:CDS | 45.0% | |
| !!! | AATATCTTTTTTATAAAATT+GGG | + | chr2_4:25435860-25435879 | None:intergenic | 5.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | + | chr2_4:25435861-25435880 | None:intergenic | 5.0% |
| !! | TAATAAATATTTAACATTTA+TGG | - | chr2_4:25436370-25436389 | Msa0322540:intron | 5.0% |
| !!! | AATATCTTTTTTATAAAATT+GGG | + | chr2_4:25435860-25435879 | None:intergenic | 5.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | + | chr2_4:25435861-25435880 | None:intergenic | 5.0% |
| !! | TAATAAATATTTAACATTTA+TGG | - | chr2_4:25436370-25436389 | Msa0322540:intron | 5.0% |
| TGGTGGCATTGCCATCTACT+GGG | - | chr2_4:25435266-25435285 | Msa0322540:CDS | 50.0% | |
| !! | TAGGTTTTGGCCCCAGTAGA+TGG | + | chr2_4:25435280-25435299 | None:intergenic | 50.0% |
| ATCTACTGGGGCCAAAACCT+AGG | - | chr2_4:25435279-25435298 | Msa0322540:CDS | 50.0% | |
| !! | AGGTGCCATCTCCTAGGTTT+TGG | + | chr2_4:25435293-25435312 | None:intergenic | 50.0% |
| ! | ATGTCAAGGTGCCATCTCCT+AGG | + | chr2_4:25435299-25435318 | None:intergenic | 50.0% |
| ! | GACCCAAGTTGGAACTTTGC+AGG | - | chr2_4:25435387-25435406 | Msa0322540:CDS | 50.0% |
| TTGCAGGTCATTGTGGTGAC+TGG | - | chr2_4:25435403-25435422 | Msa0322540:CDS | 50.0% | |
| ! | CTTTCGATCGGAGGTGCAAT+AGG | - | chr2_4:25435489-25435508 | Msa0322540:CDS | 50.0% |
| GATTGTCAAGGTCCCTAGCA+AGG | + | chr2_4:25435668-25435687 | None:intergenic | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | + | chr2_4:25435998-25436017 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | + | chr2_4:25435999-25436018 | None:intergenic | 50.0% | |
| TGCTGGTAGTCCCATGAACA+CGG | + | chr2_4:25437013-25437032 | None:intergenic | 50.0% | |
| TGGTGGCATTGCCATCTACT+GGG | - | chr2_4:25435266-25435285 | Msa0322540:CDS | 50.0% | |
| !! | TAGGTTTTGGCCCCAGTAGA+TGG | + | chr2_4:25435280-25435299 | None:intergenic | 50.0% |
| ATCTACTGGGGCCAAAACCT+AGG | - | chr2_4:25435279-25435298 | Msa0322540:CDS | 50.0% | |
| !! | AGGTGCCATCTCCTAGGTTT+TGG | + | chr2_4:25435293-25435312 | None:intergenic | 50.0% |
| ! | ATGTCAAGGTGCCATCTCCT+AGG | + | chr2_4:25435299-25435318 | None:intergenic | 50.0% |
| ! | GACCCAAGTTGGAACTTTGC+AGG | - | chr2_4:25435387-25435406 | Msa0322540:CDS | 50.0% |
| TTGCAGGTCATTGTGGTGAC+TGG | - | chr2_4:25435403-25435422 | Msa0322540:CDS | 50.0% | |
| ! | CTTTCGATCGGAGGTGCAAT+AGG | - | chr2_4:25435489-25435508 | Msa0322540:CDS | 50.0% |
| GATTGTCAAGGTCCCTAGCA+AGG | + | chr2_4:25435668-25435687 | None:intergenic | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | + | chr2_4:25435998-25436017 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | + | chr2_4:25435999-25436018 | None:intergenic | 50.0% | |
| TGCTGGTAGTCCCATGAACA+CGG | + | chr2_4:25437013-25437032 | None:intergenic | 50.0% | |
| GTGGTGGCATTGCCATCTAC+TGG | - | chr2_4:25435265-25435284 | Msa0322540:CDS | 55.0% | |
| GGTGGCATTGCCATCTACTG+GGG | - | chr2_4:25435267-25435286 | Msa0322540:CDS | 55.0% | |
| TGGGGCCAAAACCTAGGAGA+TGG | - | chr2_4:25435285-25435304 | Msa0322540:CDS | 55.0% | |
| GAGGAGGAAGAGACCCAAGT+TGG | - | chr2_4:25435376-25435395 | Msa0322540:CDS | 55.0% | |
| GCACCTAATGCAGCTCCTAG+TGG | - | chr2_4:25437033-25437052 | Msa0322540:CDS | 55.0% | |
| CCACCACTAGGAGCTGCATT+AGG | + | chr2_4:25437039-25437058 | None:intergenic | 55.0% | |
| CCTAATGCAGCTCCTAGTGG+TGG | - | chr2_4:25437036-25437055 | Msa0322540:CDS | 55.0% | |
| GTGGTGGCATTGCCATCTAC+TGG | - | chr2_4:25435265-25435284 | Msa0322540:CDS | 55.0% | |
| GGTGGCATTGCCATCTACTG+GGG | - | chr2_4:25435267-25435286 | Msa0322540:CDS | 55.0% | |
| TGGGGCCAAAACCTAGGAGA+TGG | - | chr2_4:25435285-25435304 | Msa0322540:CDS | 55.0% | |
| GAGGAGGAAGAGACCCAAGT+TGG | - | chr2_4:25435376-25435395 | Msa0322540:CDS | 55.0% | |
| GCACCTAATGCAGCTCCTAG+TGG | - | chr2_4:25437033-25437052 | Msa0322540:CDS | 55.0% | |
| CCACCACTAGGAGCTGCATT+AGG | + | chr2_4:25437039-25437058 | None:intergenic | 55.0% | |
| CCTAATGCAGCTCCTAGTGG+TGG | - | chr2_4:25437036-25437055 | Msa0322540:CDS | 55.0% | |
| ! | GGAGCTGCATTAGGTGCTGC+TGG | + | chr2_4:25437030-25437049 | None:intergenic | 60.0% |
| ! | GGAGCTGCATTAGGTGCTGC+TGG | + | chr2_4:25437030-25437049 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 25435189 | 25437287 | 25435189 | ID=Msa0322540;Name=Msa0322540 |
| chr2_4 | mRNA | 25435189 | 25437287 | 25435189 | ID=Msa0322540-mRNA-1;Parent=Msa0322540;Name=Msa0322540-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|330 |
| chr2_4 | exon | 25436773 | 25437287 | 25436773 | ID=Msa0322540-mRNA-1:exon:8985;Parent=Msa0322540-mRNA-1 |
| chr2_4 | exon | 25435189 | 25435666 | 25435189 | ID=Msa0322540-mRNA-1:exon:8984;Parent=Msa0322540-mRNA-1 |
| chr2_4 | CDS | 25436773 | 25437287 | 25436773 | ID=Msa0322540-mRNA-1:cds;Parent=Msa0322540-mRNA-1 |
| chr2_4 | CDS | 25435189 | 25435666 | 25435189 | ID=Msa0322540-mRNA-1:cds;Parent=Msa0322540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
