Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389770 | XP_013463481.1 | 84.337 | 332 | 46 | 4 | 1 | 329 | 1 | 329 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389770 | sp|P36910|CHIE_BETVU | 49.836 | 305 | 136 | 8 | 1 | 300 | 1 | 293 | 5.30e-91 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389770 | A0A072V7A7 | 84.337 | 332 | 46 | 4 | 1 | 329 | 1 | 329 | 0.0 | 552 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026450 | Msa0389770 | 0.801060 | 1.075908e-48 | -8.615850e-47 |
| Msa0053860 | Msa0389770 | 0.806798 | 6.903899e-50 | -8.615850e-47 |
| Msa0124320 | Msa0389770 | 0.801504 | 8.728265e-49 | -8.615850e-47 |
| Msa0195080 | Msa0389770 | 0.871183 | 8.297817e-67 | -8.615850e-47 |
| Msa0195100 | Msa0389770 | 0.957656 | 1.602325e-115 | -8.615850e-47 |
| Msa0195110 | Msa0389770 | 0.882505 | 9.845688e-71 | -8.615850e-47 |
| Msa0202800 | Msa0389770 | 0.980028 | 2.775212e-149 | -8.615850e-47 |
| Msa0230320 | Msa0389770 | 0.967805 | 8.726689e-128 | -8.615850e-47 |
| Msa0234090 | Msa0389770 | 0.805847 | 1.095277e-49 | -8.615850e-47 |
| Msa0367870 | Msa0389770 | 0.812038 | 5.183746e-51 | -8.615850e-47 |
| Msa0381610 | Msa0389770 | -0.807875 | 4.081993e-50 | -8.615850e-47 |
| Msa0382370 | Msa0389770 | 0.805724 | 1.162380e-49 | -8.615850e-47 |
| Msa0389770 | Msa0393430 | 0.803580 | 3.257427e-49 | -8.615850e-47 |
| Msa0389770 | Msa0432160 | 0.830553 | 2.753281e-55 | -8.615850e-47 |
| Msa0389770 | Msa0432670 | 0.824003 | 1.021480e-53 | -8.615850e-47 |
| Msa0389770 | Msa0448340 | 0.811107 | 8.258041e-51 | -8.615850e-47 |
| Msa0389770 | Msa0460590 | 0.823480 | 1.353800e-53 | -8.615850e-47 |
| Msa0389770 | Msa0476680 | 0.833019 | 6.781206e-56 | -8.615850e-47 |
| Msa0389770 | Msa0521010 | 0.832628 | 8.481450e-56 | -8.615850e-47 |
| Msa0389770 | Msa0526070 | -0.804838 | 1.782092e-49 | -8.615850e-47 |
| Msa0389770 | Msa0545850 | 0.814832 | 1.260469e-51 | -8.615850e-47 |
| Msa0389770 | Msa0559500 | 0.801241 | 9.879977e-49 | -8.615850e-47 |
| Msa0389770 | Msa0613110 | 0.805743 | 1.151865e-49 | -8.615850e-47 |
| Msa0389770 | Msa0622170 | -0.807830 | 4.173414e-50 | -8.615850e-47 |
| Msa0389770 | Msa0636500 | 0.824123 | 9.570300e-54 | -8.615850e-47 |
| Msa0389770 | Msa0680660 | 0.821043 | 4.979528e-53 | -8.615850e-47 |
| Msa0389770 | Msa0703780 | 0.801507 | 8.715767e-49 | -8.615850e-47 |
| Msa0389770 | Msa0709270 | 0.833419 | 5.390623e-56 | -8.615850e-47 |
| Msa0389770 | Msa0738340 | 0.803928 | 2.758193e-49 | -8.615850e-47 |
| Msa0389770 | Msa0743930 | 0.803922 | 2.766054e-49 | -8.615850e-47 |
| Msa0389770 | Msa0756380 | 0.813621 | 2.332888e-51 | -8.615850e-47 |
| Msa0389770 | Msa0784480 | 0.806840 | 6.766190e-50 | -8.615850e-47 |
| Msa0389770 | Msa0797770 | 0.808199 | 3.482051e-50 | -8.615850e-47 |
| Msa0389770 | Msa0813000 | 0.805117 | 1.558098e-49 | -8.615850e-47 |
| Msa0389770 | Msa0817460 | 0.816567 | 5.173786e-52 | -8.615850e-47 |
| Msa0389770 | Msa0832340 | 0.811350 | 7.315876e-51 | -8.615850e-47 |
| Msa0389770 | Msa0835230 | 0.808791 | 2.603570e-50 | -8.615850e-47 |
| Msa0389770 | Msa0844490 | 0.832525 | 8.994727e-56 | -8.615850e-47 |
| Msa0389770 | Msa0846860 | 0.801787 | 7.636865e-49 | -8.615850e-47 |
| Msa0389770 | Msa0848990 | 0.803397 | 3.555326e-49 | -8.615850e-47 |
| Msa0389770 | Msa0853520 | 0.815704 | 8.064739e-52 | -8.615850e-47 |
| Msa0389770 | Msa0855870 | 0.826903 | 2.100601e-54 | -8.615850e-47 |
| Msa0389770 | Msa0870380 | 0.815382 | 9.512228e-52 | -8.615850e-47 |
| Msa0389770 | Msa0894710 | 0.804758 | 1.852501e-49 | -8.615850e-47 |
| Msa0389770 | Msa0899970 | 0.814507 | 1.487137e-51 | -8.615850e-47 |
| Msa0389770 | Msa0921420 | 0.801382 | 9.243391e-49 | -8.615850e-47 |
| Msa0389770 | Msa0960390 | 0.805265 | 1.451394e-49 | -8.615850e-47 |
| Msa0389770 | Msa0965080 | 0.821775 | 3.374049e-53 | -8.615850e-47 |
| Msa0389770 | Msa0965290 | 0.822409 | 2.406205e-53 | -8.615850e-47 |
| Msa0389770 | Msa0972960 | 0.810903 | 9.142560e-51 | -8.615850e-47 |
| Msa0389770 | Msa0980200 | 0.802972 | 4.352886e-49 | -8.615850e-47 |
| Msa0389770 | Msa0986510 | 0.808445 | 3.085715e-50 | -8.615850e-47 |
| Msa0389770 | Msa0999680 | 0.822230 | 2.647256e-53 | -8.615850e-47 |
| Msa0389770 | Msa1006010 | -0.800583 | 1.346336e-48 | -8.615850e-47 |
| Msa0389770 | Msa1019150 | 0.812015 | 5.243237e-51 | -8.615850e-47 |
| Msa0389770 | Msa1026480 | 0.801404 | 9.150884e-49 | -8.615850e-47 |
| Msa0389770 | Msa1034500 | 0.809049 | 2.292555e-50 | -8.615850e-47 |
| Msa0389770 | Msa1036610 | 0.811070 | 8.412970e-51 | -8.615850e-47 |
| Msa0389770 | Msa1039710 | -0.802554 | 5.309180e-49 | -8.615850e-47 |
| Msa0389770 | Msa1040980 | 0.810181 | 1.309430e-50 | -8.615850e-47 |
| Msa0389770 | Msa1043760 | 0.831537 | 1.578548e-55 | -8.615850e-47 |
| Msa0389770 | Msa1079430 | 0.800737 | 1.252507e-48 | -8.615850e-47 |
| Msa0389770 | Msa1100130 | -0.810293 | 1.238838e-50 | -8.615850e-47 |
| Msa0389770 | Msa1121490 | 0.805033 | 1.622402e-49 | -8.615850e-47 |
| Msa0389770 | Msa1127380 | 0.805311 | 1.418918e-49 | -8.615850e-47 |
| Msa0389770 | Msa1132470 | 0.800100 | 1.688241e-48 | -8.615850e-47 |
| Msa0389770 | Msa1144450 | 0.811123 | 8.193875e-51 | -8.615850e-47 |
| Msa0389770 | Msa1147740 | 0.814194 | 1.744339e-51 | -8.615850e-47 |
| Msa0389770 | Msa1177560 | 0.828627 | 8.091580e-55 | -8.615850e-47 |
| Msa0389770 | Msa1185110 | 0.802363 | 5.813121e-49 | -8.615850e-47 |
| Msa0389770 | Msa1188180 | 0.805290 | 1.433627e-49 | -8.615850e-47 |
| Msa0389770 | Msa1212050 | 0.802532 | 5.365690e-49 | -8.615850e-47 |
| Msa0389770 | Msa1212130 | 0.814132 | 1.799902e-51 | -8.615850e-47 |
| Msa0389770 | Msa1226460 | 0.830259 | 3.247617e-55 | -8.615850e-47 |
| Msa0389770 | Msa1243870 | 0.811703 | 6.132726e-51 | -8.615850e-47 |
| Msa0389770 | Msa1259860 | 0.805373 | 1.377540e-49 | -8.615850e-47 |
| Msa0389770 | Msa1271130 | 0.812403 | 4.314524e-51 | -8.615850e-47 |
| Msa0389770 | Msa1284900 | 0.810858 | 9.350234e-51 | -8.615850e-47 |
| Msa0389770 | Msa1285550 | 0.806536 | 7.845011e-50 | -8.615850e-47 |
| Msa0389770 | Msa1304890 | -0.800717 | 1.264028e-48 | -8.615850e-47 |
| Msa0389770 | Msa1315420 | 0.863644 | 2.148562e-64 | -8.615850e-47 |
| Msa0389770 | Msa1342380 | 0.806015 | 1.009669e-49 | -8.615850e-47 |
| Msa0389770 | Msa1351740 | 0.800096 | 1.691681e-48 | -8.615850e-47 |
| Msa0389770 | Msa1355450 | 0.807434 | 5.063366e-50 | -8.615850e-47 |
| Msa0389770 | Msa1358070 | 0.809128 | 2.205229e-50 | -8.615850e-47 |
| Msa0389770 | Msa1386890 | 0.819921 | 9.006895e-53 | -8.615850e-47 |
| Msa0389770 | Msa1390690 | 0.806806 | 6.878155e-50 | -8.615850e-47 |
| Msa0389770 | Msa1390700 | 0.816557 | 5.200323e-52 | -8.615850e-47 |
| Msa0389770 | Msa1392900 | 0.803212 | 3.882217e-49 | -8.615850e-47 |
| Msa0389770 | Msa1392910 | 0.811667 | 6.242868e-51 | -8.615850e-47 |
| Msa0389770 | Msa1397740 | 0.800623 | 1.321492e-48 | -8.615850e-47 |
| Msa0389770 | Msa1410630 | 0.817521 | 3.158255e-52 | -8.615850e-47 |
| Msa0389770 | Msa1411050 | 0.803180 | 3.942716e-49 | -8.615850e-47 |
| Msa0389770 | Msa1419690 | 0.810710 | 1.006518e-50 | -8.615850e-47 |
| Msa0389770 | Msa1423780 | 0.960277 | 2.240227e-118 | -8.615850e-47 |
| Msa0389770 | Msa1437730 | 0.800761 | 1.238576e-48 | -8.615850e-47 |
| Msa0389770 | Msa1442920 | 0.824166 | 9.351328e-54 | -8.615850e-47 |
| Msa0389770 | Msa1448560 | 0.808098 | 3.659982e-50 | -8.615850e-47 |
| Msa0389770 | Msa1454900 | 0.800148 | 1.650806e-48 | -8.615850e-47 |
| Msa0389770 | Msa1456230 | 0.824479 | 7.892465e-54 | -8.615850e-47 |
| Msa0389770 | Msa1458340 | 0.818735 | 1.678149e-52 | -8.615850e-47 |
| Msa0389770 | Msa1458600 | 0.801754 | 7.756780e-49 | -8.615850e-47 |
| Msa0389770 | Msa1458680 | 0.825743 | 3.969825e-54 | -8.615850e-47 |
| Msa0241140 | Msa0389770 | 0.804823 | 1.795267e-49 | -8.615850e-47 |
| Msa0245900 | Msa0389770 | 0.865192 | 7.058155e-65 | -8.615850e-47 |
| Msa0259210 | Msa0389770 | 0.801127 | 1.042358e-48 | -8.615850e-47 |
| Msa0271770 | Msa0389770 | 0.805147 | 1.536307e-49 | -8.615850e-47 |
| Msa0284480 | Msa0389770 | 0.858932 | 5.863640e-63 | -8.615850e-47 |
| Msa0287870 | Msa0389770 | 0.825321 | 4.994920e-54 | -8.615850e-47 |
| Msa0290870 | Msa0389770 | 0.810721 | 1.001309e-50 | -8.615850e-47 |
| Msa0308630 | Msa0389770 | 0.977042 | 5.378569e-143 | -8.615850e-47 |
| Msa0317970 | Msa0389770 | 0.801638 | 8.194632e-49 | -8.615850e-47 |
| Msa0322530 | Msa0389770 | 0.861459 | 1.010951e-63 | -8.615850e-47 |
| Msa0322540 | Msa0389770 | 0.871488 | 6.579078e-67 | -8.615850e-47 |
| Msa0336310 | Msa0389770 | 0.808681 | 2.748368e-50 | -8.615850e-47 |
| Msa0336320 | Msa0389770 | 0.817805 | 2.725335e-52 | -8.615850e-47 |
| Msa0343850 | Msa0389770 | 0.803817 | 2.908350e-49 | -8.615850e-47 |
| Msa0363790 | Msa0389770 | 0.804637 | 1.963695e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389770 | MtrunA17_Chr2g0300141 | 84.337 | 332 | 46 | 4 | 1 | 329 | 1 | 329 | 0.0 | 552 |
| Msa0389770 | MtrunA17_Chr2g0300081 | 82.036 | 334 | 52 | 5 | 1 | 329 | 1 | 331 | 0.0 | 535 |
| Msa0389770 | MtrunA17_Chr2g0300101 | 81.325 | 332 | 55 | 6 | 1 | 329 | 1 | 328 | 0.0 | 513 |
| Msa0389770 | MtrunA17_Chr2g0300051 | 82.121 | 330 | 53 | 5 | 1 | 329 | 1 | 325 | 0.0 | 502 |
| Msa0389770 | MtrunA17_Chr2g0300181 | 57.738 | 336 | 131 | 7 | 1 | 329 | 1 | 332 | 7.87e-130 | 374 |
| Msa0389770 | MtrunA17_Chr5g0418461 | 52.843 | 299 | 125 | 8 | 10 | 300 | 4 | 294 | 3.78e-97 | 289 |
| Msa0389770 | MtrunA17_Chr1g0202241 | 51.803 | 305 | 133 | 8 | 1 | 300 | 1 | 296 | 4.55e-97 | 289 |
| Msa0389770 | MtrunA17_Chr7g0240891 | 49.013 | 304 | 140 | 8 | 5 | 300 | 2 | 298 | 4.98e-94 | 281 |
| Msa0389770 | MtrunA17_Chr1g0202231 | 49.315 | 292 | 137 | 6 | 11 | 297 | 10 | 295 | 3.69e-91 | 275 |
| Msa0389770 | MtrunA17_Chr1g0202261 | 52.030 | 271 | 119 | 7 | 23 | 287 | 20 | 285 | 4.83e-87 | 263 |
| Msa0389770 | MtrunA17_Chr2g0300171 | 82.993 | 147 | 24 | 1 | 183 | 329 | 1 | 146 | 1.72e-84 | 251 |
| Msa0389770 | MtrunA17_Chr7g0275231 | 46.104 | 308 | 149 | 9 | 2 | 300 | 4 | 303 | 1.05e-81 | 250 |
| Msa0389770 | MtrunA17_Chr8g0361941 | 46.667 | 300 | 146 | 9 | 8 | 300 | 6 | 298 | 3.99e-80 | 246 |
| Msa0389770 | MtrunA17_Chr7g0274861 | 44.746 | 295 | 130 | 7 | 11 | 300 | 9 | 275 | 1.27e-79 | 244 |
| Msa0389770 | MtrunA17_Chr1g0202281 | 47.388 | 268 | 128 | 7 | 24 | 286 | 38 | 297 | 3.03e-78 | 241 |
| Msa0389770 | MtrunA17_Chr2g0331781 | 46.075 | 293 | 140 | 8 | 7 | 286 | 13 | 300 | 1.84e-77 | 241 |
| Msa0389770 | MtrunA17_Chr2g0300161 | 69.540 | 174 | 49 | 2 | 1 | 171 | 1 | 173 | 1.95e-73 | 224 |
| Msa0389770 | MtrunA17_Chr2g0300151 | 53.548 | 155 | 58 | 4 | 1 | 144 | 1 | 152 | 2.97e-45 | 151 |
| Msa0389770 | MtrunA17_Chr6g0459141 | 43.636 | 110 | 56 | 2 | 24 | 129 | 23 | 130 | 1.46e-23 | 97.1 |
| Msa0389770 | MtrunA17_Chr6g0459141 | 45.238 | 84 | 43 | 3 | 218 | 300 | 150 | 231 | 1.69e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389770 | AT5G24090.1 | 46.205 | 303 | 153 | 7 | 3 | 300 | 5 | 302 | 3.25e-89 | 269 |
Find 69 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTTTCCTCAATGTCTT+TGG | 0.217357 | 3_2:-71746 | Msa0389770:CDS |
| ATAAAACACTGTCAAGAAAA+AGG | 0.225882 | 3_2:-71644 | Msa0389770:CDS |
| CCCATGAAAACGGTATTATT+TGG | 0.251275 | 3_2:+69165 | None:intergenic |
| AACTTTCTTAGTGGTCAATT+TGG | 0.254606 | 3_2:-71536 | Msa0389770:CDS |
| ATAGTTGGAAGTTGGTTTAA+TGG | 0.284816 | 3_2:+69065 | None:intergenic |
| TTACTTTCCCTCAGAGCATT+AGG | 0.302991 | 3_2:-71611 | Msa0389770:CDS |
| AAGGAGGTACAAATCTTTAC+TGG | 0.304361 | 3_2:-71469 | Msa0389770:CDS |
| ATTAAACCAACTTCCAACTA+TGG | 0.306183 | 3_2:-69063 | Msa0389770:CDS |
| GTTAAAATCAACACCATCTA+AGG | 0.310593 | 3_2:+71496 | None:intergenic |
| ACCAGATGATCTCATTTCTA+AGG | 0.326123 | 3_2:-69097 | Msa0389770:CDS |
| ATGGTGGCATTGCCGTCTAC+TGG | 0.329897 | 3_2:-71835 | Msa0389770:CDS |
| CTTGGAAGTGTTACCTTAGA+TGG | 0.333989 | 3_2:-71509 | Msa0389770:CDS |
| CTCTATACTAACTTTCTTAG+TGG | 0.345832 | 3_2:-71545 | Msa0389770:CDS |
| AGCACAAAATGGATACAAAA+AGG | 0.354708 | 3_2:-71922 | None:intergenic |
| TAATTTCGAGATTGTACTCT+TGG | 0.374143 | 3_2:-71765 | Msa0389770:CDS |
| CTTGACAAAGCTATCAAAAC+TGG | 0.380969 | 3_2:-69306 | Msa0389770:CDS |
| CTATGGAGGAATTATGCTTT+GGG | 0.391332 | 3_2:-69046 | Msa0389770:CDS |
| GTAATCTGGCATATAACATT+GGG | 0.392231 | 3_2:+69332 | None:intergenic |
| ACTATGGAGGAATTATGCTT+TGG | 0.402308 | 3_2:-69047 | Msa0389770:CDS |
| TGGTGGCATTGCCGTCTACT+GGG | 0.405455 | 3_2:-71834 | Msa0389770:CDS |
| GCTTTCCTCAATGTCTTTGG+AGG | 0.413044 | 3_2:-71743 | Msa0389770:CDS |
| TGATTTGCAAAGTTCAAACT+TGG | 0.417925 | 3_2:+71710 | None:intergenic |
| TAGCTTCTTCTGGTGAGCTA+AGG | 0.426254 | 3_2:+71585 | None:intergenic |
| TGATTACAGCTATCAGATAA+AGG | 0.427044 | 3_2:-68998 | Msa0389770:CDS |
| CTACATTGCTCTTAAAATCA+TGG | 0.429928 | 3_2:-69212 | Msa0389770:CDS |
| ACCTTAGAAATGAGATCATC+TGG | 0.432094 | 3_2:+69096 | None:intergenic |
| TTCCTCAATGTCTTTGGAGG+AGG | 0.446588 | 3_2:-71740 | Msa0389770:CDS |
| AGCTTCTTCTGGTGAGCTAA+GGG | 0.448193 | 3_2:+71586 | None:intergenic |
| TGGGATAGATTTCATGATGT+TGG | 0.451538 | 3_2:-69027 | Msa0389770:CDS |
| ACAATCTAAGACAACAAAAC+AGG | 0.458920 | 3_2:-71424 | Msa0389770:intron |
| AAGCATAATTCCTCCATAGT+TGG | 0.460777 | 3_2:+69050 | None:intergenic |
| TCTTAAAATCATGGAATGCT+TGG | 0.464778 | 3_2:-69203 | Msa0389770:CDS |
| CAAGTTTCAGAGGCAATAGC+TGG | 0.480314 | 3_2:-68940 | Msa0389770:CDS |
| ATTCCTCCATAGTTGGAAGT+TGG | 0.484513 | 3_2:+69057 | None:intergenic |
| TTTGTTGTCTTAGATTGTCA+AGG | 0.485852 | 3_2:+71429 | None:intergenic |
| GCTTTGTCAAGGTAGTAATC+TGG | 0.487955 | 3_2:+69318 | None:intergenic |
| TTTACTGGGATGACCTTGCT+AGG | 0.501225 | 3_2:-71454 | Msa0389770:CDS |
| TTGGAAGTTGGTTTAATGGA+AGG | 0.522478 | 3_2:+69069 | None:intergenic |
| AGTAATCTGGCATATAACAT+TGG | 0.524590 | 3_2:+69331 | None:intergenic |
| GGAGCTGCATCAGGTGATGC+TGG | 0.526731 | 3_2:+69138 | None:intergenic |
| CACTAAGAAAGTTAGTATAG+AGG | 0.529347 | 3_2:+71546 | None:intergenic |
| TGCTGGTAGTCCCATGAAAA+CGG | 0.529775 | 3_2:+69155 | None:intergenic |
| CCACCACTAGGAGCTGCATC+AGG | 0.548590 | 3_2:+69129 | None:intergenic |
| GATTTGCAAAGTTCAAACTT+GGG | 0.564533 | 3_2:+71711 | None:intergenic |
| AGTGGTCAATTTGGTCCACT+TGG | 0.566066 | 3_2:-71527 | Msa0389770:CDS |
| AAGGGCTCCTAATGCTCTGA+GGG | 0.572834 | 3_2:+71604 | None:intergenic |
| TATGATTTAATTCGTAAACA+TGG | 0.576145 | 3_2:+68894 | None:intergenic |
| TTGAACTTTGCAAATCATTG+TGG | 0.576615 | 3_2:-71704 | Msa0389770:CDS |
| TTCCTCCTCCAAAGACATTG+AGG | 0.584718 | 3_2:+71738 | None:intergenic |
| TGATGATGCTTTGATAGTGA+AGG | 0.585896 | 3_2:+71862 | None:intergenic |
| TTACTGGGATGACCTTGCTA+GGG | 0.587273 | 3_2:-71453 | Msa0389770:CDS |
| AGGAGGTACAAATCTTTACT+GGG | 0.587554 | 3_2:-71468 | Msa0389770:CDS |
| TGGGGCCAAAACGTAAAAGA+AGG | 0.591748 | 3_2:-71815 | Msa0389770:CDS |
| GATTGTCAAGGTCCCTAGCA+AGG | 0.595500 | 3_2:+71441 | None:intergenic |
| ATATTGTCAAGACTAACAAA+AGG | 0.600315 | 3_2:+71888 | None:intergenic |
| ATCAAAGCATCATCAAGTGA+TGG | 0.610130 | 3_2:-71854 | Msa0389770:CDS |
| TTGACATCAACATGTGACAC+TGG | 0.615620 | 3_2:-71788 | Msa0389770:CDS |
| GATGATGCTTTGATAGTGAA+GGG | 0.636457 | 3_2:+71863 | None:intergenic |
| AAACCAACTTCCAACTATGG+AGG | 0.642148 | 3_2:-69060 | Msa0389770:CDS |
| AAAGCATCATCAAGTGATGG+TGG | 0.646449 | 3_2:-71851 | Msa0389770:CDS |
| TCACCTGATGCAGCTCCTAG+TGG | 0.649095 | 3_2:-69132 | Msa0389770:CDS |
| TAAGGGCTCCTAATGCTCTG+AGG | 0.652053 | 3_2:+71603 | None:intergenic |
| CCTGATGCAGCTCCTAGTGG+TGG | 0.652514 | 3_2:-69129 | Msa0389770:CDS |
| GGTGGCATTGCCGTCTACTG+GGG | 0.654303 | 3_2:-71833 | Msa0389770:CDS |
| AGTGTCACATGTTGATGTCA+AGG | 0.656681 | 3_2:+71790 | None:intergenic |
| TAATCTGGCATATAACATTG+GGG | 0.697221 | 3_2:+69333 | None:intergenic |
| GGTGGTATATAACCACCACT+AGG | 0.701616 | 3_2:+69117 | None:intergenic |
| TCTAAGGTAACACTTCCAAG+TGG | 0.714737 | 3_2:+71512 | None:intergenic |
| TTAGAAATGAGATCATCTGG+TGG | 0.728954 | 3_2:+69099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCTTTGAAAAAATA+TGG | + | chr3_2:69870-69889 | None:intergenic | 10.0% |
| !! | AATATGAGAAAATATAATAT+AGG | - | chr3_2:69977-69996 | Msa0389770:intron | 10.0% |
| !! | TAATAAATATTTACCATTTA+TGG | - | chr3_2:71092-71111 | Msa0389770:intron | 10.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | - | chr3_2:69874-69893 | Msa0389770:intron | 15.0% |
| !!! | TATCCATTCTAAAATTATTA+TGG | + | chr3_2:70301-70320 | None:intergenic | 15.0% |
| !! | TACTTATGTTACAAATATTT+GGG | + | chr3_2:70545-70564 | None:intergenic | 15.0% |
| !! | ATACTTATGTTACAAATATT+TGG | + | chr3_2:70546-70565 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGATTTATGAC+AGG | + | chr3_2:71215-71234 | None:intergenic | 15.0% |
| !!! | GAAATGATGTTTTTTTTTAT+GGG | + | chr3_2:71297-71316 | None:intergenic | 15.0% |
| !!! | TGAAATGATGTTTTTTTTTA+TGG | + | chr3_2:71298-71317 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCATATTGACA+TGG | + | chr3_2:71574-71593 | None:intergenic | 15.0% |
| !!! | TAGTACTTTTTTTTTGAATC+GGG | + | chr3_2:69466-69485 | None:intergenic | 20.0% |
| !!! | CTAGTACTTTTTTTTTGAAT+CGG | + | chr3_2:69467-69486 | None:intergenic | 20.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | + | chr3_2:69595-69614 | None:intergenic | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | + | chr3_2:69714-69733 | None:intergenic | 20.0% |
| !! | AAAAAATATGGTTGTTCATT+AGG | + | chr3_2:69858-69877 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | - | chr3_2:69925-69944 | Msa0389770:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | + | chr3_2:69962-69981 | None:intergenic | 20.0% |
| !!! | TGCTTACTTTTATTTATGTT+TGG | + | chr3_2:70138-70157 | None:intergenic | 20.0% |
| !! | TAGAATGGATATAGTAAAAA+AGG | - | chr3_2:70310-70329 | Msa0389770:intron | 20.0% |
| !! | AGTATTATATGAACTAGTAT+TGG | - | chr3_2:70371-70390 | Msa0389770:intron | 20.0% |
| !!! | ACTTTTTTTTTAGGGAAATA+CGG | + | chr3_2:70572-70591 | None:intergenic | 20.0% |
| !!! | CGGAAAATACTTTTTTTTTA+GGG | + | chr3_2:70580-70599 | None:intergenic | 20.0% |
| !!! | ACGGAAAATACTTTTTTTTT+AGG | + | chr3_2:70581-70600 | None:intergenic | 20.0% |
| !!! | TTTAACTTAAGAAAGTAGAA+TGG | - | chr3_2:70737-70756 | Msa0389770:intron | 20.0% |
| !! | AGCATAATGCTATAATATAT+TGG | - | chr3_2:71147-71166 | Msa0389770:intron | 20.0% |
| !! | GCATAATGCTATAATATATT+GGG | - | chr3_2:71148-71167 | Msa0389770:intron | 20.0% |
| !! | ATCTTTAAATTAAAGTGTAC+CGG | - | chr3_2:71185-71204 | Msa0389770:intron | 20.0% |
| !!! | AAAGGTTGATTTGTTAATTA+GGG | + | chr3_2:71394-71413 | None:intergenic | 20.0% |
| !!! | AAAAGGTTGATTTGTTAATT+AGG | + | chr3_2:71395-71414 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTTTTTTGAGAG+AGG | + | chr3_2:71432-71451 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAATCTCTTGC+AGG | - | chr3_2:71437-71456 | Msa0389770:CDS | 20.0% |
| ! | ATATTGTCAAGACTAACAAA+AGG | + | chr3_2:68929-68948 | None:intergenic | 25.0% |
| !!! | TTCTTGACAGTGTTTTATTT+CGG | + | chr3_2:69168-69187 | None:intergenic | 25.0% |
| ! | ATAAAACACTGTCAAGAAAA+AGG | - | chr3_2:69170-69189 | Msa0389770:CDS | 25.0% |
| ! | TAAAACACTGTCAAGAAAAA+GGG | - | chr3_2:69171-69190 | Msa0389770:CDS | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | + | chr3_2:69840-69859 | None:intergenic | 25.0% |
| !!! | GCTCCATAATAATTTTAGAA+TGG | - | chr3_2:70295-70314 | Msa0389770:intron | 25.0% |
| !! | TTATATGAACTAGTATTGGA+TGG | - | chr3_2:70375-70394 | Msa0389770:intron | 25.0% |
| !! | CAAAAATTTTCACTTGTCTT+CGG | + | chr3_2:70780-70799 | None:intergenic | 25.0% |
| ! | TGCAAATAAACGGATATAAT+TGG | - | chr3_2:70911-70930 | Msa0389770:intron | 25.0% |
| !! | GTTGAAATTTTACAATCTCA+GGG | - | chr3_2:70933-70952 | Msa0389770:intron | 25.0% |
| !! | TTGAAATTTTACAATCTCAG+GGG | - | chr3_2:70934-70953 | Msa0389770:intron | 25.0% |
| ! | TAATATATTGGGAGTTTCTA+CGG | - | chr3_2:71159-71178 | Msa0389770:intron | 25.0% |
| !! | TTTTATCATATTGACATGGA+GGG | + | chr3_2:71570-71589 | None:intergenic | 25.0% |
| !! | TTTTTATCATATTGACATGG+AGG | + | chr3_2:71571-71590 | None:intergenic | 25.0% |
| TAATTTCGAGATTGTACTCT+TGG | - | chr3_2:69049-69068 | Msa0389770:CDS | 30.0% | |
| GATTTGCAAAGTTCAAACTT+GGG | + | chr3_2:69106-69125 | None:intergenic | 30.0% | |
| ! | TGATTTGCAAAGTTCAAACT+TGG | + | chr3_2:69107-69126 | None:intergenic | 30.0% |
| TTGAACTTTGCAAATCATTG+TGG | - | chr3_2:69110-69129 | Msa0389770:CDS | 30.0% | |
| CACTAAGAAAGTTAGTATAG+AGG | + | chr3_2:69271-69290 | None:intergenic | 30.0% | |
| CTCTATACTAACTTTCTTAG+TGG | - | chr3_2:69269-69288 | Msa0389770:CDS | 30.0% | |
| AACTTTCTTAGTGGTCAATT+TGG | - | chr3_2:69278-69297 | Msa0389770:CDS | 30.0% | |
| GTTAAAATCAACACCATCTA+AGG | + | chr3_2:69321-69340 | None:intergenic | 30.0% | |
| !!! | GGTGTTGATTTTAACATTGA+AGG | - | chr3_2:69326-69345 | Msa0389770:CDS | 30.0% |
| !! | GTTGATTTTAACATTGAAGG+AGG | - | chr3_2:69329-69348 | Msa0389770:CDS | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | + | chr3_2:69388-69407 | None:intergenic | 30.0% |
| ! | ACAATCTAAGACAACAAAAC+AGG | - | chr3_2:69390-69409 | Msa0389770:intron | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | + | chr3_2:69507-69526 | None:intergenic | 30.0% |
| TATTGGATGGACACAATATA+AGG | - | chr3_2:70388-70407 | Msa0389770:intron | 30.0% | |
| ATTGGATGGACACAATATAA+GGG | - | chr3_2:70389-70408 | Msa0389770:intron | 30.0% | |
| TCCGTATTAAATATGCAAAC+TGG | - | chr3_2:70596-70615 | Msa0389770:intron | 30.0% | |
| CCCAGTTTGCATATTTAATA+CGG | + | chr3_2:70600-70619 | None:intergenic | 30.0% | |
| CCGTATTAAATATGCAAACT+GGG | - | chr3_2:70597-70616 | Msa0389770:intron | 30.0% | |
| ATGATCAAAACTTTAGCACA+TGG | + | chr3_2:70630-70649 | None:intergenic | 30.0% | |
| CACTTCAAATTAAGTTCTCA+GGG | + | chr3_2:70678-70697 | None:intergenic | 30.0% | |
| TCACTTCAAATTAAGTTCTC+AGG | + | chr3_2:70679-70698 | None:intergenic | 30.0% | |
| TGGTGCAAAATAAATTTCTC+AGG | - | chr3_2:70879-70898 | Msa0389770:intron | 30.0% | |
| GGTGCAAAATAAATTTCTCA+GGG | - | chr3_2:70880-70899 | Msa0389770:intron | 30.0% | |
| ! | GGTTGAAATTTTACAATCTC+AGG | - | chr3_2:70932-70951 | Msa0389770:intron | 30.0% |
| ! | TGAAATTTTACAATCTCAGG+GGG | - | chr3_2:70935-70954 | Msa0389770:intron | 30.0% |
| CATGTTAAGGATTCCATAAA+TGG | + | chr3_2:71108-71127 | None:intergenic | 30.0% | |
| TATGCTAACTTGAGTTCTTA+AGG | + | chr3_2:71133-71152 | None:intergenic | 30.0% | |
| TAATCTGGCATATAACATTG+GGG | + | chr3_2:71484-71503 | None:intergenic | 30.0% | |
| GTAATCTGGCATATAACATT+GGG | + | chr3_2:71485-71504 | None:intergenic | 30.0% | |
| AGTAATCTGGCATATAACAT+TGG | + | chr3_2:71486-71505 | None:intergenic | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | - | chr3_2:71602-71621 | Msa0389770:CDS | 30.0% | |
| TCTTAAAATCATGGAATGCT+TGG | - | chr3_2:71611-71630 | Msa0389770:CDS | 30.0% | |
| ! | ACCAAATAATACCGTTTTCA+TGG | - | chr3_2:71648-71667 | Msa0389770:CDS | 30.0% |
| ! | CCAAATAATACCGTTTTCAT+GGG | - | chr3_2:71649-71668 | Msa0389770:CDS | 30.0% |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | + | chr3_2:71752-71771 | None:intergenic | 30.0% |
| ATTAAACCAACTTCCAACTA+TGG | - | chr3_2:71751-71770 | Msa0389770:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | - | chr3_2:71816-71835 | Msa0389770:CDS | 30.0% | |
| !!! | TTTTAAGACACAAGTTTCAG+AGG | - | chr3_2:71864-71883 | Msa0389770:CDS | 30.0% |
| !! | GATGATGCTTTGATAGTGAA+GGG | + | chr3_2:68954-68973 | None:intergenic | 35.0% |
| !! | TGATGATGCTTTGATAGTGA+AGG | + | chr3_2:68955-68974 | None:intergenic | 35.0% |
| ! | ATCAAAGCATCATCAAGTGA+TGG | - | chr3_2:68960-68979 | Msa0389770:CDS | 35.0% |
| !!! | GAAACAGTTTTAGCTTCTTC+TGG | + | chr3_2:69242-69261 | None:intergenic | 35.0% |
| ! | AAGGAGGTACAAATCTTTAC+TGG | - | chr3_2:69345-69364 | Msa0389770:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | - | chr3_2:69346-69365 | Msa0389770:CDS | 35.0% |
| ! | AAGATGAAGAACCCTGTTTT+GGG | + | chr3_2:69645-69664 | None:intergenic | 35.0% |
| ATGACATGGAGATATCAGAA+AGG | + | chr3_2:69700-69719 | None:intergenic | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | + | chr3_2:69762-69781 | None:intergenic | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | - | chr3_2:69760-69779 | Msa0389770:intron | 35.0% | |
| GTTAAATAAAACGTGGTGTC+TGG | + | chr3_2:69833-69852 | None:intergenic | 35.0% | |
| AAATATGCAAACTGGGAACT+TGG | - | chr3_2:70604-70623 | Msa0389770:intron | 35.0% | |
| GAAGGTGAGATAAGAATAAC+TGG | - | chr3_2:70823-70842 | Msa0389770:intron | 35.0% | |
| ACATGTTAAGGAACTTAAGG+TGG | - | chr3_2:71009-71028 | Msa0389770:intron | 35.0% | |
| AGTTCTTAAGGCACATGTTA+AGG | + | chr3_2:71121-71140 | None:intergenic | 35.0% | |
| TTGATTTATGACAGGTGTAC+CGG | + | chr3_2:71207-71226 | None:intergenic | 35.0% | |
| ! | ATCAACCTTTTATCTCTTGC+AGG | - | chr3_2:71404-71423 | Msa0389770:intron | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | + | chr3_2:71510-71529 | None:intergenic | 35.0% |
| CTTGACAAAGCTATCAAAAC+TGG | - | chr3_2:71508-71527 | Msa0389770:CDS | 35.0% | |
| CCCATGAAAACGGTATTATT+TGG | + | chr3_2:71652-71671 | None:intergenic | 35.0% | |
| TTAGAAATGAGATCATCTGG+TGG | + | chr3_2:71718-71737 | None:intergenic | 35.0% | |
| ACCAGATGATCTCATTTCTA+AGG | - | chr3_2:71717-71736 | Msa0389770:CDS | 35.0% | |
| ACCTTAGAAATGAGATCATC+TGG | + | chr3_2:71721-71740 | None:intergenic | 35.0% | |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | + | chr3_2:71748-71767 | None:intergenic | 35.0% |
| AAGCATAATTCCTCCATAGT+TGG | + | chr3_2:71767-71786 | None:intergenic | 35.0% | |
| ACTATGGAGGAATTATGCTT+TGG | - | chr3_2:71767-71786 | Msa0389770:CDS | 35.0% | |
| CTATGGAGGAATTATGCTTT+GGG | - | chr3_2:71768-71787 | Msa0389770:CDS | 35.0% | |
| TGGGATAGATTTCATGATGT+TGG | - | chr3_2:71787-71806 | Msa0389770:CDS | 35.0% | |
| ! | AAAGCATCATCAAGTGATGG+TGG | - | chr3_2:68963-68982 | Msa0389770:CDS | 40.0% |
| ! | AGGTGCCTTCTTTTACGTTT+TGG | + | chr3_2:69007-69026 | None:intergenic | 40.0% |
| AGTGTCACATGTTGATGTCA+AGG | + | chr3_2:69027-69046 | None:intergenic | 40.0% | |
| TTGACATCAACATGTGACAC+TGG | - | chr3_2:69026-69045 | Msa0389770:CDS | 40.0% | |
| ! | TTGGCTTTCCTCAATGTCTT+TGG | - | chr3_2:69068-69087 | Msa0389770:CDS | 40.0% |
| !! | CGGATTCGAGTTTTGTACAA+GGG | + | chr3_2:69148-69167 | None:intergenic | 40.0% |
| !! | TCGGATTCGAGTTTTGTACA+AGG | + | chr3_2:69149-69168 | None:intergenic | 40.0% |
| CTGTCAAGAAAAAGGGTTCA+AGG | - | chr3_2:69178-69197 | Msa0389770:CDS | 40.0% | |
| ! | TTACTTTCCCTCAGAGCATT+AGG | - | chr3_2:69203-69222 | Msa0389770:CDS | 40.0% |
| ! | TCTAAGGTAACACTTCCAAG+TGG | + | chr3_2:69305-69324 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | - | chr3_2:69305-69324 | Msa0389770:CDS | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | + | chr3_2:69646-69665 | None:intergenic | 40.0% |
| GCGTAAAGAATAAGGTTGCT+TGG | - | chr3_2:69768-69787 | Msa0389770:intron | 40.0% | |
| !! | TTAACTTGTGCTCTTAGCAG+TGG | - | chr3_2:70006-70025 | Msa0389770:intron | 40.0% |
| CTCAAAGTGAAACAACATGC+TGG | - | chr3_2:70859-70878 | Msa0389770:intron | 40.0% | |
| GGTGTGCAAGTGCAAATAAA+CGG | - | chr3_2:70901-70920 | Msa0389770:intron | 40.0% | |
| GGCACATGTTAAGGAACTTA+AGG | - | chr3_2:71006-71025 | Msa0389770:intron | 40.0% | |
| AGGTACCTGCAAGAGATAAA+AGG | + | chr3_2:71412-71431 | None:intergenic | 40.0% | |
| ! | CAGGTACTTTTACTTGTCTG+CGG | - | chr3_2:71456-71475 | Msa0389770:CDS | 40.0% |
| GCTTTGTCAAGGTAGTAATC+TGG | + | chr3_2:71499-71518 | None:intergenic | 40.0% | |
| AAACCAACTTCCAACTATGG+AGG | - | chr3_2:71754-71773 | Msa0389770:CDS | 40.0% | |
| ATTCCTCCATAGTTGGAAGT+TGG | + | chr3_2:71760-71779 | None:intergenic | 40.0% | |
| TGGGGCCAAAACGTAAAAGA+AGG | - | chr3_2:68999-69018 | Msa0389770:CDS | 45.0% | |
| GCTTTCCTCAATGTCTTTGG+AGG | - | chr3_2:69071-69090 | Msa0389770:CDS | 45.0% | |
| ! | TTCCTCAATGTCTTTGGAGG+AGG | - | chr3_2:69074-69093 | Msa0389770:CDS | 45.0% |
| TTCCTCCTCCAAAGACATTG+AGG | + | chr3_2:69079-69098 | None:intergenic | 45.0% | |
| !! | GAGTTTTGTACAAGGGCTCT+CGG | + | chr3_2:69141-69160 | None:intergenic | 45.0% |
| AGCTTCTTCTGGTGAGCTAA+GGG | + | chr3_2:69231-69250 | None:intergenic | 45.0% | |
| TAGCTTCTTCTGGTGAGCTA+AGG | + | chr3_2:69232-69251 | None:intergenic | 45.0% | |
| AGTGGTCAATTTGGTCCACT+TGG | - | chr3_2:69287-69306 | Msa0389770:CDS | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | - | chr3_2:69360-69379 | Msa0389770:intron | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | - | chr3_2:69361-69380 | Msa0389770:intron | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | - | chr3_2:69630-69649 | Msa0389770:intron | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | - | chr3_2:69631-69650 | Msa0389770:intron | 45.0% | |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | + | chr3_2:69639-69658 | None:intergenic | 45.0% |
| GCTTGGTAGACCAAAGAAAC+TGG | - | chr3_2:69785-69804 | Msa0389770:intron | 45.0% | |
| AGACCAAAGAAACTGGCATC+TGG | - | chr3_2:69792-69811 | Msa0389770:intron | 45.0% | |
| AAGCCAGATGCCAGTTTCTT+TGG | + | chr3_2:69798-69817 | None:intergenic | 45.0% | |
| AAAGAAACTGGCATCTGGCT+TGG | - | chr3_2:69797-69816 | Msa0389770:intron | 45.0% | |
| ! | AAGAAACTGGCATCTGGCTT+GGG | - | chr3_2:69798-69817 | Msa0389770:intron | 45.0% |
| ! | AAAACGTGGTGTCTGGTCTT+TGG | + | chr3_2:69826-69845 | None:intergenic | 45.0% |
| TCACCTTCTGACGCATAAAG+AGG | + | chr3_2:70811-70830 | None:intergenic | 45.0% | |
| AACATGTGCCCTAAGAACCA+GGG | + | chr3_2:70996-71015 | None:intergenic | 45.0% | |
| TAACATGTGCCCTAAGAACC+AGG | + | chr3_2:70997-71016 | None:intergenic | 45.0% | |
| GGTTCTTAGGGCACATGTTA+AGG | - | chr3_2:70997-71016 | Msa0389770:intron | 45.0% | |
| TGCTGGTAGTCCCATGAAAA+CGG | + | chr3_2:71662-71681 | None:intergenic | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | + | chr3_2:71700-71719 | None:intergenic | 45.0% | |
| CAAGTTTCAGAGGCAATAGC+TGG | - | chr3_2:71874-71893 | Msa0389770:CDS | 45.0% | |
| !!! | AATATCTTTTTTATAAAATT+GGG | + | chr3_2:69601-69620 | None:intergenic | 5.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | + | chr3_2:69602-69621 | None:intergenic | 5.0% |
| !! | TACGTTTTGGCCCCAGTAGA+CGG | + | chr3_2:68994-69013 | None:intergenic | 50.0% |
| AAGGGCTCCTAATGCTCTGA+GGG | + | chr3_2:69213-69232 | None:intergenic | 50.0% | |
| TAAGGGCTCCTAATGCTCTG+AGG | + | chr3_2:69214-69233 | None:intergenic | 50.0% | |
| GATTGTCAAGGTCCCTAGCA+AGG | + | chr3_2:69376-69395 | None:intergenic | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | + | chr3_2:69741-69760 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | + | chr3_2:69742-69761 | None:intergenic | 50.0% | |
| GCACCTCTTTATGCGTCAGA+AGG | - | chr3_2:70805-70824 | Msa0389770:intron | 50.0% | |
| ! | TTTACAATCTCAGGGGGTGC+AGG | - | chr3_2:70941-70960 | Msa0389770:intron | 50.0% |
| AGGTGCACACCCTCAATAAG+AGG | - | chr3_2:70961-70980 | Msa0389770:intron | 50.0% | |
| TGCACACCCTCAATAAGAGG+TGG | - | chr3_2:70964-70983 | Msa0389770:intron | 50.0% | |
| ACATGTGCCCTAAGAACCAG+GGG | + | chr3_2:70995-71014 | None:intergenic | 50.0% | |
| ATGGTGGCATTGCCGTCTAC+TGG | - | chr3_2:68979-68998 | Msa0389770:CDS | 55.0% | |
| TGGTGGCATTGCCGTCTACT+GGG | - | chr3_2:68980-68999 | Msa0389770:CDS | 55.0% | |
| CTCTTAGCAGTGGCGTATCC+AGG | - | chr3_2:70016-70035 | Msa0389770:intron | 55.0% | |
| GCGGAGCCACCTCTTATTGA+GGG | + | chr3_2:70973-70992 | None:intergenic | 55.0% | |
| TCACCTGATGCAGCTCCTAG+TGG | - | chr3_2:71682-71701 | Msa0389770:CDS | 55.0% | |
| GGTGGCATTGCCGTCTACTG+GGG | - | chr3_2:68981-69000 | Msa0389770:CDS | 60.0% | |
| AGTGGCGTATCCAGGACCCT+GGG | - | chr3_2:70024-70043 | Msa0389770:intron | 60.0% | |
| GTATCCAGGACCCTGGGTCA+GGG | - | chr3_2:70030-70049 | Msa0389770:intron | 60.0% | |
| TATCCAGGACCCTGGGTCAG+GGG | - | chr3_2:70031-70050 | Msa0389770:intron | 60.0% | |
| !! | GTCAGGGGGTGCGGAGTTTT+TGG | - | chr3_2:70046-70065 | Msa0389770:intron | 60.0% |
| GGCGGAGCCACCTCTTATTG+AGG | + | chr3_2:70974-70993 | None:intergenic | 60.0% | |
| TGTGCCCTAAGAACCAGGGG+CGG | + | chr3_2:70992-71011 | None:intergenic | 60.0% | |
| GGAGCTGCATCAGGTGATGC+TGG | + | chr3_2:71679-71698 | None:intergenic | 60.0% | |
| CCACCACTAGGAGCTGCATC+AGG | + | chr3_2:71688-71707 | None:intergenic | 60.0% | |
| CCTGATGCAGCTCCTAGTGG+TGG | - | chr3_2:71685-71704 | Msa0389770:CDS | 60.0% | |
| CAGTGGCGTATCCAGGACCC+TGG | - | chr3_2:70023-70042 | Msa0389770:intron | 65.0% | |
| CGTATCCAGGACCCTGGGTC+AGG | - | chr3_2:70029-70048 | Msa0389770:intron | 65.0% | |
| ATCCAGGACCCTGGGTCAGG+GGG | - | chr3_2:70032-70051 | Msa0389770:intron | 65.0% | |
| ATAAGAGGTGGCTCCGCCCC+TGG | - | chr3_2:70976-70995 | Msa0389770:intron | 65.0% | |
| ! | TGGCTCCGCCCCTGGTTCTT+AGG | - | chr3_2:70984-71003 | Msa0389770:intron | 65.0% |
| ! | GGCTCCGCCCCTGGTTCTTA+GGG | - | chr3_2:70985-71004 | Msa0389770:intron | 65.0% |
| ACTCCGCACCCCCTGACCCA+GGG | + | chr3_2:70043-70062 | None:intergenic | 70.0% | |
| AACTCCGCACCCCCTGACCC+AGG | + | chr3_2:70044-70063 | None:intergenic | 70.0% | |
| CACCCCCTGACCCAGGGTCC+TGG | + | chr3_2:70037-70056 | None:intergenic | 75.0% | |
| GGACCCTGGGTCAGGGGGTG+CGG | - | chr3_2:70037-70056 | Msa0389770:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 68900 | 71936 | 68900 | ID=Msa0389770;Name=Msa0389770 |
| chr3_2 | mRNA | 68900 | 71936 | 68900 | ID=Msa0389770-mRNA-1;Parent=Msa0389770;Name=Msa0389770-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|2|0|329 |
| chr3_2 | exon | 71425 | 71936 | 71425 | ID=Msa0389770-mRNA-1:exon:13;Parent=Msa0389770-mRNA-1 |
| chr3_2 | exon | 68900 | 69377 | 68900 | ID=Msa0389770-mRNA-1:exon:12;Parent=Msa0389770-mRNA-1 |
| chr3_2 | CDS | 71425 | 71936 | 71425 | ID=Msa0389770-mRNA-1:cds;Parent=Msa0389770-mRNA-1 |
| chr3_2 | CDS | 68900 | 69377 | 68900 | ID=Msa0389770-mRNA-1:cds;Parent=Msa0389770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
