Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195100 | XP_013463481.1 | 84.639 | 332 | 45 | 4 | 1 | 329 | 1 | 329 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195100 | sp|P36910|CHIE_BETVU | 49.836 | 305 | 136 | 8 | 1 | 300 | 1 | 293 | 4.46e-91 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195100 | A0A072V7A7 | 84.639 | 332 | 45 | 4 | 1 | 329 | 1 | 329 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa0195100 | 0.807349 | 5.279755e-50 | -8.615850e-47 |
| Msa0053860 | Msa0195100 | 0.816990 | 4.158586e-52 | -8.615850e-47 |
| Msa0072720 | Msa0195100 | 0.803222 | 3.863899e-49 | -8.615850e-47 |
| Msa0079070 | Msa0195100 | 0.803573 | 3.268383e-49 | -8.615850e-47 |
| Msa0103770 | Msa0195100 | 0.801142 | 1.034978e-48 | -8.615850e-47 |
| Msa0124320 | Msa0195100 | 0.804221 | 2.397601e-49 | -8.615850e-47 |
| Msa0195080 | Msa0195100 | 0.905979 | 2.418920e-80 | -8.615850e-47 |
| Msa0195100 | Msa0195110 | 0.870535 | 1.356471e-66 | -8.615850e-47 |
| Msa0195100 | Msa0202800 | 0.952469 | 2.263837e-110 | -8.615850e-47 |
| Msa0195100 | Msa0204840 | 0.803968 | 2.706311e-49 | -8.615850e-47 |
| Msa0195100 | Msa0218050 | 0.800507 | 1.395297e-48 | -8.615850e-47 |
| Msa0195100 | Msa0230320 | 0.978865 | 9.955020e-147 | -8.615850e-47 |
| Msa0195100 | Msa0234090 | 0.804906 | 1.725164e-49 | -8.615850e-47 |
| Msa0195100 | Msa0241140 | 0.807988 | 3.862058e-50 | -8.615850e-47 |
| Msa0195100 | Msa0245900 | 0.886417 | 3.484510e-72 | -8.615850e-47 |
| Msa0195100 | Msa0259210 | 0.804268 | 2.343851e-49 | -8.615850e-47 |
| Msa0195100 | Msa0264830 | 0.805133 | 1.546689e-49 | -8.615850e-47 |
| Msa0195100 | Msa0284480 | 0.878337 | 3.047383e-69 | -8.615850e-47 |
| Msa0195100 | Msa0287870 | 0.822452 | 2.351554e-53 | -8.615850e-47 |
| Msa0195100 | Msa0290870 | 0.817507 | 3.181280e-52 | -8.615850e-47 |
| Msa0195100 | Msa0308630 | 0.965629 | 7.462913e-125 | -8.615850e-47 |
| Msa0195100 | Msa0317970 | 0.803408 | 3.536454e-49 | -8.615850e-47 |
| Msa0195100 | Msa0322530 | 0.863599 | 2.218504e-64 | -8.615850e-47 |
| Msa0195100 | Msa0322540 | 0.878163 | 3.507458e-69 | -8.615850e-47 |
| Msa0195100 | Msa0336320 | 0.813911 | 2.014433e-51 | -8.615850e-47 |
| Msa0195100 | Msa0340340 | 0.801293 | 9.643375e-49 | -8.615850e-47 |
| Msa0195100 | Msa0343850 | 0.815541 | 8.771371e-52 | -8.615850e-47 |
| Msa0195100 | Msa0363790 | 0.816256 | 6.072544e-52 | -8.615850e-47 |
| Msa0195100 | Msa0367870 | 0.819539 | 1.101424e-52 | -8.615850e-47 |
| Msa0195100 | Msa0381610 | -0.811529 | 6.687840e-51 | -8.615850e-47 |
| Msa0195100 | Msa0382370 | 0.809288 | 2.037687e-50 | -8.615850e-47 |
| Msa0195100 | Msa0389770 | 0.957656 | 1.602325e-115 | -8.615850e-47 |
| Msa0195100 | Msa0417330 | 0.805671 | 1.192633e-49 | -8.615850e-47 |
| Msa0195100 | Msa0432160 | 0.832650 | 8.377435e-56 | -8.615850e-47 |
| Msa0195100 | Msa0432670 | 0.824064 | 9.884260e-54 | -8.615850e-47 |
| Msa0195100 | Msa0448340 | 0.807950 | 3.934794e-50 | -8.615850e-47 |
| Msa0195100 | Msa0455760 | 0.802305 | 5.974499e-49 | -8.615850e-47 |
| Msa0195100 | Msa0460590 | 0.827598 | 1.431919e-54 | -8.615850e-47 |
| Msa0195100 | Msa0469940 | -0.802284 | 6.034969e-49 | -8.615850e-47 |
| Msa0195100 | Msa0471900 | 0.801886 | 7.285643e-49 | -8.615850e-47 |
| Msa0195100 | Msa0476680 | 0.837004 | 6.710785e-57 | -8.615850e-47 |
| Msa0195100 | Msa0514320 | 0.801556 | 8.516055e-49 | -8.615850e-47 |
| Msa0195100 | Msa0521010 | 0.836847 | 7.362303e-57 | -8.615850e-47 |
| Msa0195100 | Msa0526070 | -0.805525 | 1.279781e-49 | -8.615850e-47 |
| Msa0195100 | Msa0545850 | 0.807508 | 4.884788e-50 | -8.615850e-47 |
| Msa0195100 | Msa0559500 | 0.815414 | 9.356994e-52 | -8.615850e-47 |
| Msa0195100 | Msa0613110 | 0.802433 | 5.624050e-49 | -8.615850e-47 |
| Msa0195100 | Msa0613710 | 0.801689 | 7.996829e-49 | -8.615850e-47 |
| Msa0195100 | Msa0622170 | -0.806198 | 9.243879e-50 | -8.615850e-47 |
| Msa0195100 | Msa0633700 | 0.801647 | 8.159284e-49 | -8.615850e-47 |
| Msa0195100 | Msa0636500 | 0.810957 | 8.903365e-51 | -8.615850e-47 |
| Msa0195100 | Msa0645300 | 0.813813 | 2.116938e-51 | -8.615850e-47 |
| Msa0195100 | Msa0680660 | 0.812896 | 3.365840e-51 | -8.615850e-47 |
| Msa0195100 | Msa0696850 | 0.811486 | 6.836202e-51 | -8.615850e-47 |
| Msa0195100 | Msa0709270 | 0.833294 | 5.792890e-56 | -8.615850e-47 |
| Msa0195100 | Msa0736600 | 0.805882 | 1.077080e-49 | -8.615850e-47 |
| Msa0195100 | Msa0738340 | 0.805669 | 1.193819e-49 | -8.615850e-47 |
| Msa0195100 | Msa0743930 | 0.805233 | 1.473636e-49 | -8.615850e-47 |
| Msa0195100 | Msa0784480 | 0.810816 | 9.550205e-51 | -8.615850e-47 |
| Msa0195100 | Msa0797770 | 0.812394 | 4.335355e-51 | -8.615850e-47 |
| Msa0195100 | Msa0813000 | 0.801170 | 1.021718e-48 | -8.615850e-47 |
| Msa0195100 | Msa0817460 | 0.821887 | 3.179254e-53 | -8.615850e-47 |
| Msa0195100 | Msa0818060 | 0.805796 | 1.122654e-49 | -8.615850e-47 |
| Msa0195100 | Msa0818890 | 0.803005 | 4.284621e-49 | -8.615850e-47 |
| Msa0195100 | Msa0832340 | 0.820347 | 7.196622e-53 | -8.615850e-47 |
| Msa0195100 | Msa0833520 | 0.804192 | 2.430129e-49 | -8.615850e-47 |
| Msa0195100 | Msa0835230 | 0.811470 | 6.890310e-51 | -8.615850e-47 |
| Msa0195100 | Msa0844490 | 0.833242 | 5.969030e-56 | -8.615850e-47 |
| Msa0195100 | Msa0848990 | 0.825168 | 5.430434e-54 | -8.615850e-47 |
| Msa0195100 | Msa0853520 | 0.832726 | 8.019594e-56 | -8.615850e-47 |
| Msa0195100 | Msa0855870 | 0.827574 | 1.451285e-54 | -8.615850e-47 |
| Msa0195100 | Msa0859070 | 0.804299 | 2.308643e-49 | -8.615850e-47 |
| Msa0195100 | Msa0870380 | 0.838092 | 3.530966e-57 | -8.615850e-47 |
| Msa0195100 | Msa0894710 | 0.811365 | 7.262221e-51 | -8.615850e-47 |
| Msa0195100 | Msa0899970 | 0.818265 | 2.145159e-52 | -8.615850e-47 |
| Msa0195100 | Msa0914270 | 0.804541 | 2.055879e-49 | -8.615850e-47 |
| Msa0195100 | Msa0921420 | 0.810722 | 1.000638e-50 | -8.615850e-47 |
| Msa0195100 | Msa0927380 | 0.814337 | 1.622259e-51 | -8.615850e-47 |
| Msa0195100 | Msa0936060 | 0.814655 | 1.379108e-51 | -8.615850e-47 |
| Msa0195100 | Msa0936390 | 0.801287 | 9.668325e-49 | -8.615850e-47 |
| Msa0195100 | Msa0960390 | 0.814624 | 1.401552e-51 | -8.615850e-47 |
| Msa0195100 | Msa0964900 | 0.809896 | 1.508586e-50 | -8.615850e-47 |
| Msa0195100 | Msa0965080 | 0.823229 | 1.550140e-53 | -8.615850e-47 |
| Msa0195100 | Msa0965290 | 0.822810 | 1.940864e-53 | -8.615850e-47 |
| Msa0195100 | Msa0972960 | 0.826993 | 1.999580e-54 | -8.615850e-47 |
| Msa0195100 | Msa0980200 | 0.800728 | 1.257625e-48 | -8.615850e-47 |
| Msa0195100 | Msa0986510 | 0.808295 | 3.322737e-50 | -8.615850e-47 |
| Msa0195100 | Msa0994910 | 0.801154 | 1.029555e-48 | -8.615850e-47 |
| Msa0195100 | Msa0999680 | 0.823648 | 1.237166e-53 | -8.615850e-47 |
| Msa0195100 | Msa1006010 | -0.802340 | 5.878227e-49 | -8.615850e-47 |
| Msa0195100 | Msa1019000 | 0.804648 | 1.952769e-49 | -8.615850e-47 |
| Msa0195100 | Msa1019150 | 0.829115 | 6.164489e-55 | -8.615850e-47 |
| Msa0195100 | Msa1026480 | 0.802072 | 6.671754e-49 | -8.615850e-47 |
| Msa0195100 | Msa1034500 | 0.814300 | 1.652785e-51 | -8.615850e-47 |
| Msa0195100 | Msa1036610 | 0.810567 | 1.081185e-50 | -8.615850e-47 |
| Msa0195100 | Msa1039710 | -0.804458 | 2.139858e-49 | -8.615850e-47 |
| Msa0195100 | Msa1040980 | 0.801782 | 7.654649e-49 | -8.615850e-47 |
| Msa0195100 | Msa1043760 | 0.826779 | 2.249492e-54 | -8.615850e-47 |
| Msa0195100 | Msa1079430 | 0.816831 | 4.514347e-52 | -8.615850e-47 |
| Msa0195100 | Msa1121490 | 0.819188 | 1.324297e-52 | -8.615850e-47 |
| Msa0195100 | Msa1131050 | 0.811031 | 8.580868e-51 | -8.615850e-47 |
| Msa0195100 | Msa1144450 | 0.808636 | 2.810130e-50 | -8.615850e-47 |
| Msa0195100 | Msa1147740 | 0.828548 | 8.458381e-55 | -8.615850e-47 |
| Msa0195100 | Msa1177560 | 0.839150 | 1.882461e-57 | -8.615850e-47 |
| Msa0195100 | Msa1185110 | 0.821696 | 3.520063e-53 | -8.615850e-47 |
| Msa0195100 | Msa1188180 | 0.804145 | 2.485795e-49 | -8.615850e-47 |
| Msa0195100 | Msa1212050 | 0.807342 | 5.297580e-50 | -8.615850e-47 |
| Msa0195100 | Msa1212130 | 0.813480 | 2.506077e-51 | -8.615850e-47 |
| Msa0195100 | Msa1226460 | 0.836357 | 9.811254e-57 | -8.615850e-47 |
| Msa0195100 | Msa1238820 | 0.804632 | 1.968453e-49 | -8.615850e-47 |
| Msa0195100 | Msa1243870 | 0.813132 | 2.988396e-51 | -8.615850e-47 |
| Msa0195100 | Msa1259860 | 0.813484 | 2.500156e-51 | -8.615850e-47 |
| Msa0195100 | Msa1271130 | 0.816515 | 5.313840e-52 | -8.615850e-47 |
| Msa0195100 | Msa1277690 | 0.800911 | 1.154190e-48 | -8.615850e-47 |
| Msa0195100 | Msa1284900 | 0.811888 | 5.587252e-51 | -8.615850e-47 |
| Msa0195100 | Msa1285550 | 0.815735 | 7.939217e-52 | -8.615850e-47 |
| Msa0195100 | Msa1286800 | 0.805231 | 1.475374e-49 | -8.615850e-47 |
| Msa0195100 | Msa1296890 | 0.805010 | 1.640831e-49 | -8.615850e-47 |
| Msa0195100 | Msa1304890 | -0.800809 | 1.210951e-48 | -8.615850e-47 |
| Msa0195100 | Msa1315420 | 0.844477 | 7.380271e-59 | -8.615850e-47 |
| Msa0195100 | Msa1351740 | 0.827279 | 1.708108e-54 | -8.615850e-47 |
| Msa0195100 | Msa1355450 | 0.808616 | 2.837042e-50 | -8.615850e-47 |
| Msa0195100 | Msa1384280 | 0.819624 | 1.053204e-52 | -8.615850e-47 |
| Msa0195100 | Msa1386890 | 0.817494 | 3.203396e-52 | -8.615850e-47 |
| Msa0195100 | Msa1390700 | 0.820600 | 6.294637e-53 | -8.615850e-47 |
| Msa0195100 | Msa1392910 | 0.814108 | 1.822469e-51 | -8.615850e-47 |
| Msa0195100 | Msa1397740 | 0.810012 | 1.423927e-50 | -8.615850e-47 |
| Msa0195100 | Msa1410630 | 0.815433 | 9.266506e-52 | -8.615850e-47 |
| Msa0195100 | Msa1411050 | 0.818612 | 1.789560e-52 | -8.615850e-47 |
| Msa0195100 | Msa1419690 | 0.809672 | 1.685610e-50 | -8.615850e-47 |
| Msa0195100 | Msa1423780 | 0.969047 | 1.496961e-129 | -8.615850e-47 |
| Msa0195100 | Msa1425090 | 0.813650 | 2.298638e-51 | -8.615850e-47 |
| Msa0195100 | Msa1435270 | 0.801080 | 1.065830e-48 | -8.615850e-47 |
| Msa0195100 | Msa1442920 | 0.820083 | 8.270282e-53 | -8.615850e-47 |
| Msa0195100 | Msa1448560 | 0.817314 | 3.517143e-52 | -8.615850e-47 |
| Msa0195100 | Msa1456230 | 0.826353 | 2.841937e-54 | -8.615850e-47 |
| Msa0195100 | Msa1458340 | 0.816825 | 4.528347e-52 | -8.615850e-47 |
| Msa0195100 | Msa1458680 | 0.823395 | 1.417338e-53 | -8.615850e-47 |
| Msa0195100 | Msa1459100 | 0.812472 | 4.168281e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195100 | MtrunA17_Chr2g0300141 | 84.639 | 332 | 45 | 4 | 1 | 329 | 1 | 329 | 0.0 | 554 |
| Msa0195100 | MtrunA17_Chr2g0300081 | 82.335 | 334 | 51 | 5 | 1 | 329 | 1 | 331 | 0.0 | 536 |
| Msa0195100 | MtrunA17_Chr2g0300101 | 81.325 | 332 | 55 | 6 | 1 | 329 | 1 | 328 | 0.0 | 513 |
| Msa0195100 | MtrunA17_Chr2g0300051 | 82.424 | 330 | 52 | 5 | 1 | 329 | 1 | 325 | 0.0 | 505 |
| Msa0195100 | MtrunA17_Chr2g0300181 | 57.738 | 336 | 131 | 7 | 1 | 329 | 1 | 332 | 1.89e-129 | 372 |
| Msa0195100 | MtrunA17_Chr1g0202241 | 51.803 | 305 | 133 | 8 | 1 | 300 | 1 | 296 | 2.37e-97 | 290 |
| Msa0195100 | MtrunA17_Chr5g0418461 | 52.843 | 299 | 125 | 8 | 10 | 300 | 4 | 294 | 5.71e-97 | 288 |
| Msa0195100 | MtrunA17_Chr7g0240891 | 49.013 | 304 | 140 | 8 | 5 | 300 | 2 | 298 | 6.26e-94 | 281 |
| Msa0195100 | MtrunA17_Chr1g0202231 | 49.315 | 292 | 137 | 6 | 11 | 297 | 10 | 295 | 1.86e-91 | 276 |
| Msa0195100 | MtrunA17_Chr1g0202261 | 52.030 | 271 | 119 | 7 | 23 | 287 | 20 | 285 | 1.65e-87 | 265 |
| Msa0195100 | MtrunA17_Chr2g0300171 | 83.673 | 147 | 23 | 1 | 183 | 329 | 1 | 146 | 1.90e-85 | 254 |
| Msa0195100 | MtrunA17_Chr7g0275231 | 45.779 | 308 | 150 | 9 | 2 | 300 | 4 | 303 | 1.18e-80 | 247 |
| Msa0195100 | MtrunA17_Chr7g0274861 | 44.746 | 295 | 130 | 7 | 11 | 300 | 9 | 275 | 4.69e-80 | 244 |
| Msa0195100 | MtrunA17_Chr8g0361941 | 47.508 | 301 | 142 | 10 | 8 | 300 | 6 | 298 | 1.10e-79 | 244 |
| Msa0195100 | MtrunA17_Chr2g0331781 | 46.416 | 293 | 139 | 8 | 7 | 286 | 13 | 300 | 7.03e-78 | 242 |
| Msa0195100 | MtrunA17_Chr1g0202281 | 47.388 | 268 | 128 | 7 | 24 | 286 | 38 | 297 | 1.06e-77 | 240 |
| Msa0195100 | MtrunA17_Chr2g0300161 | 69.540 | 174 | 49 | 2 | 1 | 171 | 1 | 173 | 2.10e-73 | 224 |
| Msa0195100 | MtrunA17_Chr2g0300151 | 53.548 | 155 | 58 | 4 | 1 | 144 | 1 | 152 | 3.20e-45 | 151 |
| Msa0195100 | MtrunA17_Chr6g0459141 | 43.636 | 110 | 56 | 2 | 24 | 129 | 23 | 130 | 1.30e-23 | 97.1 |
| Msa0195100 | MtrunA17_Chr6g0459141 | 44.706 | 85 | 44 | 3 | 217 | 300 | 149 | 231 | 1.50e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195100 | AT5G24090.1 | 46.205 | 303 | 153 | 7 | 3 | 300 | 5 | 302 | 1.54e-89 | 270 |
Find 69 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTTTCCTCAATGTCTT+TGG | 0.217357 | 2_1:+11800741 | Msa0195100:CDS |
| ATAAAACACTGTCAAGAAAA+AGG | 0.225882 | 2_1:+11800843 | Msa0195100:CDS |
| CCCATGAAAACGGTATTATT+TGG | 0.251275 | 2_1:-11803324 | None:intergenic |
| AACTTTCTTAGTGGTCAATT+TGG | 0.254606 | 2_1:+11800951 | Msa0195100:CDS |
| ATAGTTGGAAGTTGGTTTAA+TGG | 0.284816 | 2_1:-11803424 | None:intergenic |
| TTACTTTCCCTCAGAGCATT+AGG | 0.302991 | 2_1:+11800876 | Msa0195100:CDS |
| AAGGAGGTACAAATCTTTAC+TGG | 0.304361 | 2_1:+11801018 | Msa0195100:CDS |
| ATTAAACCAACTTCCAACTA+TGG | 0.306183 | 2_1:+11803426 | Msa0195100:CDS |
| GTTAAAATCAACACCATCTA+AGG | 0.310593 | 2_1:-11800991 | None:intergenic |
| ACCAGATGATCTCATTTCTA+AGG | 0.326123 | 2_1:+11803392 | Msa0195100:CDS |
| ATGGTGGCATTGCCGTCTAC+TGG | 0.329897 | 2_1:+11800652 | Msa0195100:CDS |
| CTTGGAAGTGTTACCTTAGA+TGG | 0.333989 | 2_1:+11800978 | Msa0195100:CDS |
| CTCTATACTAACTTTCTTAG+TGG | 0.345832 | 2_1:+11800942 | Msa0195100:CDS |
| AGCACAAAATGGATACAAAA+AGG | 0.354708 | 2_1:+11800565 | None:intergenic |
| TAATTTCGAGATTGTACTCT+TGG | 0.374143 | 2_1:+11800722 | Msa0195100:CDS |
| CTTGACAAAGCTATCAAAAC+TGG | 0.380969 | 2_1:+11803183 | Msa0195100:CDS |
| CTATGGAGGAATTATGCTTT+GGG | 0.391332 | 2_1:+11803443 | Msa0195100:CDS |
| GTAATCTGGCATATAACATT+GGG | 0.392231 | 2_1:-11803157 | None:intergenic |
| ACTATGGAGGAATTATGCTT+TGG | 0.402308 | 2_1:+11803442 | Msa0195100:CDS |
| TGGTGGCATTGCCGTCTACT+GGG | 0.405455 | 2_1:+11800653 | Msa0195100:CDS |
| GCTTTCCTCAATGTCTTTGG+AGG | 0.413044 | 2_1:+11800744 | Msa0195100:CDS |
| TGATTTGCAAAGTTCAAACT+TGG | 0.417925 | 2_1:-11800777 | None:intergenic |
| TAGCTTCTTCTGGTGAGCTA+AGG | 0.426254 | 2_1:-11800902 | None:intergenic |
| TGATTACAGCTATCAGATAA+AGG | 0.427044 | 2_1:+11803491 | Msa0195100:CDS |
| CTACATTGCTCTTAAAATCA+TGG | 0.429928 | 2_1:+11803277 | Msa0195100:CDS |
| ACCTTAGAAATGAGATCATC+TGG | 0.432094 | 2_1:-11803393 | None:intergenic |
| TTCCTCAATGTCTTTGGAGG+AGG | 0.446588 | 2_1:+11800747 | Msa0195100:CDS |
| AGCTTCTTCTGGTGAGCTAA+GGG | 0.448193 | 2_1:-11800901 | None:intergenic |
| TGGGATAGATTTCATGATGT+TGG | 0.451538 | 2_1:+11803462 | Msa0195100:CDS |
| CAAGTTTCTGAGGCAATAGC+TGG | 0.454724 | 2_1:+11803549 | Msa0195100:CDS |
| ACAATCTAAGACAACAAAAC+AGG | 0.458920 | 2_1:+11801063 | Msa0195100:CDS |
| AAGCATAATTCCTCCATAGT+TGG | 0.460777 | 2_1:-11803439 | None:intergenic |
| TCTTAAAATCATGGAATGCT+TGG | 0.464778 | 2_1:+11803286 | Msa0195100:CDS |
| ATTCCTCCATAGTTGGAAGT+TGG | 0.484513 | 2_1:-11803432 | None:intergenic |
| TTTGTTGTCTTAGATTGTCA+AGG | 0.485852 | 2_1:-11801058 | None:intergenic |
| GCTTTGTCAAGGTAGTAATC+TGG | 0.487955 | 2_1:-11803171 | None:intergenic |
| TTTACTGGGATGACCTTGCT+AGG | 0.501225 | 2_1:+11801033 | Msa0195100:CDS |
| TTGGAAGTTGGTTTAATGGA+AGG | 0.522478 | 2_1:-11803420 | None:intergenic |
| AGTAATCTGGCATATAACAT+TGG | 0.524590 | 2_1:-11803158 | None:intergenic |
| GGAGCTGCATCAGGTGATGC+TGG | 0.526731 | 2_1:-11803351 | None:intergenic |
| CACTAAGAAAGTTAGTATAG+AGG | 0.529347 | 2_1:-11800941 | None:intergenic |
| TGCTGGTAGTCCCATGAAAA+CGG | 0.529775 | 2_1:-11803334 | None:intergenic |
| CCACCACTAGGAGCTGCATC+AGG | 0.548590 | 2_1:-11803360 | None:intergenic |
| GATTTGCAAAGTTCAAACTT+GGG | 0.564533 | 2_1:-11800776 | None:intergenic |
| AGTGGTCAATTTGGTCCACT+TGG | 0.566066 | 2_1:+11800960 | Msa0195100:CDS |
| AAGGGCTCCTAATGCTCTGA+GGG | 0.572834 | 2_1:-11800883 | None:intergenic |
| TATGATTTAATTCGTAAACA+TGG | 0.576145 | 2_1:-11803595 | None:intergenic |
| TTGAACTTTGCAAATCATTG+TGG | 0.576615 | 2_1:+11800783 | Msa0195100:CDS |
| TTCCTCCTCCAAAGACATTG+AGG | 0.584718 | 2_1:-11800749 | None:intergenic |
| TGATGATGCTTTGATAGTGA+AGG | 0.585896 | 2_1:-11800625 | None:intergenic |
| TTACTGGGATGACCTTGCTA+GGG | 0.587273 | 2_1:+11801034 | Msa0195100:CDS |
| AGGAGGTACAAATCTTTACT+GGG | 0.587554 | 2_1:+11801019 | Msa0195100:CDS |
| TGGGGCCAAAACGTAAAAGA+AGG | 0.591748 | 2_1:+11800672 | Msa0195100:CDS |
| GATTGTCAAGGTCCCTAGCA+AGG | 0.595500 | 2_1:-11801046 | None:intergenic |
| ATATTGTCAAGACTAACAAA+AGG | 0.600315 | 2_1:-11800599 | None:intergenic |
| ATCAAAGCATCATCAAGTGA+TGG | 0.610130 | 2_1:+11800633 | Msa0195100:CDS |
| TTGACATCAACATGTGACAC+TGG | 0.615620 | 2_1:+11800699 | Msa0195100:CDS |
| GATGATGCTTTGATAGTGAA+GGG | 0.636457 | 2_1:-11800624 | None:intergenic |
| AAACCAACTTCCAACTATGG+AGG | 0.642148 | 2_1:+11803429 | Msa0195100:CDS |
| AAAGCATCATCAAGTGATGG+TGG | 0.646449 | 2_1:+11800636 | Msa0195100:CDS |
| TCACCTGATGCAGCTCCTAG+TGG | 0.649095 | 2_1:+11803357 | Msa0195100:CDS |
| TAAGGGCTCCTAATGCTCTG+AGG | 0.652053 | 2_1:-11800884 | None:intergenic |
| CCTGATGCAGCTCCTAGTGG+TGG | 0.652514 | 2_1:+11803360 | Msa0195100:CDS |
| GGTGGCATTGCCGTCTACTG+GGG | 0.654303 | 2_1:+11800654 | Msa0195100:CDS |
| AGTGTCACATGTTGATGTCA+AGG | 0.656681 | 2_1:-11800697 | None:intergenic |
| TAATCTGGCATATAACATTG+GGG | 0.697221 | 2_1:-11803156 | None:intergenic |
| GGTGGTATATAACCACCACT+AGG | 0.701616 | 2_1:-11803372 | None:intergenic |
| TCTAAGGTAACACTTCCAAG+TGG | 0.714737 | 2_1:-11800975 | None:intergenic |
| TTAGAAATGAGATCATCTGG+TGG | 0.728954 | 2_1:-11803390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCTTTGAAAAAATA+TGG | - | chr2_1:11801544-11801563 | None:intergenic | 10.0% |
| !! | AATATGAGAAAATATAATAT+AGG | + | chr2_1:11801651-11801670 | Msa0195100:intron | 10.0% |
| !! | TAATAAATATTTACCATTTA+TGG | + | chr2_1:11802767-11802786 | Msa0195100:intron | 10.0% |
| !!! | TTTTCAAAGAAAAATATGTA+TGG | + | chr2_1:11801548-11801567 | Msa0195100:intron | 15.0% |
| !!! | TATCCATTCTAAAATTATTA+TGG | - | chr2_1:11801975-11801994 | None:intergenic | 15.0% |
| !! | TACTTATGTTACAAATATTT+GGG | - | chr2_1:11802219-11802238 | None:intergenic | 15.0% |
| !! | ATACTTATGTTACAAATATT+TGG | - | chr2_1:11802220-11802239 | None:intergenic | 15.0% |
| !!! | GGAAAATACTTTTTTTTTTA+GGG | - | chr2_1:11802254-11802273 | None:intergenic | 15.0% |
| !!! | TTAATTTATTGATTTATGAC+AGG | - | chr2_1:11802890-11802909 | None:intergenic | 15.0% |
| !!! | GAAATGATGTTTTTTTTTAT+GGG | - | chr2_1:11802972-11802991 | None:intergenic | 15.0% |
| !!! | TGAAATGATGTTTTTTTTTA+TGG | - | chr2_1:11802973-11802992 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCATATTGACA+TGG | - | chr2_1:11803249-11803268 | None:intergenic | 15.0% |
| !!! | TAGTACTTTTTTTTTGAATC+GGG | - | chr2_1:11801139-11801158 | None:intergenic | 20.0% |
| !!! | CTAGTACTTTTTTTTTGAAT+CGG | - | chr2_1:11801140-11801159 | None:intergenic | 20.0% |
| !!! | TTTTTTATAAAATTGGGATG+TGG | - | chr2_1:11801269-11801288 | None:intergenic | 20.0% |
| !! | TAAAGAAATATATCATGACA+TGG | - | chr2_1:11801388-11801407 | None:intergenic | 20.0% |
| !! | AAAAAATATGGTTGTTCATT+AGG | - | chr2_1:11801532-11801551 | None:intergenic | 20.0% |
| !! | AAATATAATGTGAGTATAAG+AGG | + | chr2_1:11801599-11801618 | Msa0195100:intron | 20.0% |
| !! | ATATTCACATTATACACTTT+AGG | - | chr2_1:11801636-11801655 | None:intergenic | 20.0% |
| !!! | TGCTTACTTTTATTTATGTT+TGG | - | chr2_1:11801812-11801831 | None:intergenic | 20.0% |
| !! | TAGAATGGATATAGTAAAAA+AGG | + | chr2_1:11801984-11802003 | Msa0195100:intron | 20.0% |
| !! | AGTATTATATGAACTAGTAT+TGG | + | chr2_1:11802045-11802064 | Msa0195100:intron | 20.0% |
| !!! | CTTTTTTTTTTAGGGAAATA+CGG | - | chr2_1:11802246-11802265 | None:intergenic | 20.0% |
| !!! | CGGAAAATACTTTTTTTTTT+AGG | - | chr2_1:11802255-11802274 | None:intergenic | 20.0% |
| !!! | TTTAACTTAAGAAAGTAGAA+TGG | + | chr2_1:11802412-11802431 | Msa0195100:intron | 20.0% |
| !! | AGCATAATGCTATAATATAT+TGG | + | chr2_1:11802822-11802841 | Msa0195100:intron | 20.0% |
| !! | GCATAATGCTATAATATATT+GGG | + | chr2_1:11802823-11802842 | Msa0195100:intron | 20.0% |
| !! | ATCTTTAAATTAAAGTGTAC+CGG | + | chr2_1:11802860-11802879 | Msa0195100:intron | 20.0% |
| !!! | AAAGGTTGATTTGTTAATTA+GGG | - | chr2_1:11803069-11803088 | None:intergenic | 20.0% |
| !!! | AAAAGGTTGATTTGTTAATT+AGG | - | chr2_1:11803070-11803089 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTTTTTTGAGAG+AGG | - | chr2_1:11803107-11803126 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAATCTCTTGC+AGG | + | chr2_1:11803112-11803131 | Msa0195100:intron | 20.0% |
| ! | ATATTGTCAAGACTAACAAA+AGG | - | chr2_1:11800602-11800621 | None:intergenic | 25.0% |
| !!! | TTCTTGACAGTGTTTTATTT+CGG | - | chr2_1:11800841-11800860 | None:intergenic | 25.0% |
| ! | ATAAAACACTGTCAAGAAAA+AGG | + | chr2_1:11800843-11800862 | Msa0195100:CDS | 25.0% |
| ! | TAAAACACTGTCAAGAAAAA+GGG | + | chr2_1:11800844-11800863 | Msa0195100:CDS | 25.0% |
| ! | TTAGGATGTTAAATAAAACG+TGG | - | chr2_1:11801514-11801533 | None:intergenic | 25.0% |
| !!! | GCTCCATAATAATTTTAGAA+TGG | + | chr2_1:11801969-11801988 | Msa0195100:intron | 25.0% |
| !! | TTATATGAACTAGTATTGGA+TGG | + | chr2_1:11802049-11802068 | Msa0195100:intron | 25.0% |
| !! | CAAAAATTTTCACTTGTCTT+CGG | - | chr2_1:11802455-11802474 | None:intergenic | 25.0% |
| ! | TGCAAATAAACGGATATAAT+TGG | + | chr2_1:11802586-11802605 | Msa0195100:intron | 25.0% |
| !! | GTTGAAATTTTACAATCTCA+GGG | + | chr2_1:11802608-11802627 | Msa0195100:intron | 25.0% |
| !! | TTGAAATTTTACAATCTCAG+GGG | + | chr2_1:11802609-11802628 | Msa0195100:intron | 25.0% |
| ! | TAATATATTGGGAGTTTCTA+CGG | + | chr2_1:11802834-11802853 | Msa0195100:intron | 25.0% |
| !! | TTTTATCATATTGACATGGA+GGG | - | chr2_1:11803245-11803264 | None:intergenic | 25.0% |
| !! | TTTTTATCATATTGACATGG+AGG | - | chr2_1:11803246-11803265 | None:intergenic | 25.0% |
| TAATTTCGAGATTGTACTCT+TGG | + | chr2_1:11800722-11800741 | Msa0195100:CDS | 30.0% | |
| GATTTGCAAAGTTCAAACTT+GGG | - | chr2_1:11800779-11800798 | None:intergenic | 30.0% | |
| ! | TGATTTGCAAAGTTCAAACT+TGG | - | chr2_1:11800780-11800799 | None:intergenic | 30.0% |
| TTGAACTTTGCAAATCATTG+TGG | + | chr2_1:11800783-11800802 | Msa0195100:CDS | 30.0% | |
| CACTAAGAAAGTTAGTATAG+AGG | - | chr2_1:11800944-11800963 | None:intergenic | 30.0% | |
| CTCTATACTAACTTTCTTAG+TGG | + | chr2_1:11800942-11800961 | Msa0195100:CDS | 30.0% | |
| AACTTTCTTAGTGGTCAATT+TGG | + | chr2_1:11800951-11800970 | Msa0195100:CDS | 30.0% | |
| GTTAAAATCAACACCATCTA+AGG | - | chr2_1:11800994-11801013 | None:intergenic | 30.0% | |
| !!! | GGTGTTGATTTTAACATTGA+AGG | + | chr2_1:11800999-11801018 | Msa0195100:CDS | 30.0% |
| !! | GTTGATTTTAACATTGAAGG+AGG | + | chr2_1:11801002-11801021 | Msa0195100:CDS | 30.0% |
| ! | TTTGTTGTCTTAGATTGTCA+AGG | - | chr2_1:11801061-11801080 | None:intergenic | 30.0% |
| ! | ACAATCTAAGACAACAAAAC+AGG | + | chr2_1:11801063-11801082 | Msa0195100:CDS | 30.0% |
| !! | TATAGTTTCAAGTTGTACAG+CGG | - | chr2_1:11801180-11801199 | None:intergenic | 30.0% |
| TATTGGATGGACACAATATA+AGG | + | chr2_1:11802062-11802081 | Msa0195100:intron | 30.0% | |
| ATTGGATGGACACAATATAA+GGG | + | chr2_1:11802063-11802082 | Msa0195100:intron | 30.0% | |
| TCCGTATTAAATATGCAAAC+TGG | + | chr2_1:11802271-11802290 | Msa0195100:intron | 30.0% | |
| CCCAGTTTGCATATTTAATA+CGG | - | chr2_1:11802275-11802294 | None:intergenic | 30.0% | |
| CCGTATTAAATATGCAAACT+GGG | + | chr2_1:11802272-11802291 | Msa0195100:intron | 30.0% | |
| CACTTCAAATTAAGTTCTCA+GGG | - | chr2_1:11802353-11802372 | None:intergenic | 30.0% | |
| TCACTTCAAATTAAGTTCTC+AGG | - | chr2_1:11802354-11802373 | None:intergenic | 30.0% | |
| TGGTGCAAAATAAATTTCTC+AGG | + | chr2_1:11802554-11802573 | Msa0195100:intron | 30.0% | |
| GGTGCAAAATAAATTTCTCA+GGG | + | chr2_1:11802555-11802574 | Msa0195100:intron | 30.0% | |
| ! | GGTTGAAATTTTACAATCTC+AGG | + | chr2_1:11802607-11802626 | Msa0195100:intron | 30.0% |
| ! | TGAAATTTTACAATCTCAGG+GGG | + | chr2_1:11802610-11802629 | Msa0195100:intron | 30.0% |
| CATGTTAAGGATTCCATAAA+TGG | - | chr2_1:11802783-11802802 | None:intergenic | 30.0% | |
| TATGCTAACTTGAGTTCTTA+AGG | - | chr2_1:11802808-11802827 | None:intergenic | 30.0% | |
| TAATCTGGCATATAACATTG+GGG | - | chr2_1:11803159-11803178 | None:intergenic | 30.0% | |
| GTAATCTGGCATATAACATT+GGG | - | chr2_1:11803160-11803179 | None:intergenic | 30.0% | |
| AGTAATCTGGCATATAACAT+TGG | - | chr2_1:11803161-11803180 | None:intergenic | 30.0% | |
| CTACATTGCTCTTAAAATCA+TGG | + | chr2_1:11803277-11803296 | Msa0195100:CDS | 30.0% | |
| TCTTAAAATCATGGAATGCT+TGG | + | chr2_1:11803286-11803305 | Msa0195100:CDS | 30.0% | |
| ! | ACCAAATAATACCGTTTTCA+TGG | + | chr2_1:11803323-11803342 | Msa0195100:CDS | 30.0% |
| ! | CCAAATAATACCGTTTTCAT+GGG | + | chr2_1:11803324-11803343 | Msa0195100:CDS | 30.0% |
| ! | ATAGTTGGAAGTTGGTTTAA+TGG | - | chr2_1:11803427-11803446 | None:intergenic | 30.0% |
| ATTAAACCAACTTCCAACTA+TGG | + | chr2_1:11803426-11803445 | Msa0195100:CDS | 30.0% | |
| TGATTACAGCTATCAGATAA+AGG | + | chr2_1:11803491-11803510 | Msa0195100:CDS | 30.0% | |
| !!! | TTTTAAGACACAAGTTTCTG+AGG | + | chr2_1:11803539-11803558 | Msa0195100:CDS | 30.0% |
| !! | GATGATGCTTTGATAGTGAA+GGG | - | chr2_1:11800627-11800646 | None:intergenic | 35.0% |
| !! | TGATGATGCTTTGATAGTGA+AGG | - | chr2_1:11800628-11800647 | None:intergenic | 35.0% |
| ! | ATCAAAGCATCATCAAGTGA+TGG | + | chr2_1:11800633-11800652 | Msa0195100:CDS | 35.0% |
| !!! | GAAACAGTTTTAGCTTCTTC+TGG | - | chr2_1:11800915-11800934 | None:intergenic | 35.0% |
| ! | AAGGAGGTACAAATCTTTAC+TGG | + | chr2_1:11801018-11801037 | Msa0195100:CDS | 35.0% |
| ! | AGGAGGTACAAATCTTTACT+GGG | + | chr2_1:11801019-11801038 | Msa0195100:CDS | 35.0% |
| ! | AAGATGAAGAACCCTGTTTT+GGG | - | chr2_1:11801319-11801338 | None:intergenic | 35.0% |
| ATGACATGGAGATATCAGAA+AGG | - | chr2_1:11801374-11801393 | None:intergenic | 35.0% | |
| CTTATTCTTTACGCACACAA+AGG | - | chr2_1:11801436-11801455 | None:intergenic | 35.0% | |
| CTTTGTGTGCGTAAAGAATA+AGG | + | chr2_1:11801434-11801453 | Msa0195100:intron | 35.0% | |
| GTTAAATAAAACGTGGTGTC+TGG | - | chr2_1:11801507-11801526 | None:intergenic | 35.0% | |
| AAATATGCAAACTGGGAACT+TGG | + | chr2_1:11802279-11802298 | Msa0195100:intron | 35.0% | |
| ATGATCAAGACTTTAGCACA+TGG | - | chr2_1:11802305-11802324 | None:intergenic | 35.0% | |
| GAAGGTGAGATAAGAATAAC+TGG | + | chr2_1:11802498-11802517 | Msa0195100:intron | 35.0% | |
| ACATGTTAAGGAACTTAAGG+TGG | + | chr2_1:11802684-11802703 | Msa0195100:intron | 35.0% | |
| AGTTCTTAAGGCACATGTTA+AGG | - | chr2_1:11802796-11802815 | None:intergenic | 35.0% | |
| TTGATTTATGACAGGTGTAC+CGG | - | chr2_1:11802882-11802901 | None:intergenic | 35.0% | |
| ! | ATCAACCTTTTATCTCTTGC+AGG | + | chr2_1:11803079-11803098 | Msa0195100:intron | 35.0% |
| !!! | CAGTTTTGATAGCTTTGTCA+AGG | - | chr2_1:11803185-11803204 | None:intergenic | 35.0% |
| CTTGACAAAGCTATCAAAAC+TGG | + | chr2_1:11803183-11803202 | Msa0195100:CDS | 35.0% | |
| CCCATGAAAACGGTATTATT+TGG | - | chr2_1:11803327-11803346 | None:intergenic | 35.0% | |
| TTAGAAATGAGATCATCTGG+TGG | - | chr2_1:11803393-11803412 | None:intergenic | 35.0% | |
| ACCAGATGATCTCATTTCTA+AGG | + | chr2_1:11803392-11803411 | Msa0195100:CDS | 35.0% | |
| ACCTTAGAAATGAGATCATC+TGG | - | chr2_1:11803396-11803415 | None:intergenic | 35.0% | |
| ! | TTGGAAGTTGGTTTAATGGA+AGG | - | chr2_1:11803423-11803442 | None:intergenic | 35.0% |
| AAGCATAATTCCTCCATAGT+TGG | - | chr2_1:11803442-11803461 | None:intergenic | 35.0% | |
| ACTATGGAGGAATTATGCTT+TGG | + | chr2_1:11803442-11803461 | Msa0195100:CDS | 35.0% | |
| CTATGGAGGAATTATGCTTT+GGG | + | chr2_1:11803443-11803462 | Msa0195100:CDS | 35.0% | |
| TGGGATAGATTTCATGATGT+TGG | + | chr2_1:11803462-11803481 | Msa0195100:CDS | 35.0% | |
| ! | AAAGCATCATCAAGTGATGG+TGG | + | chr2_1:11800636-11800655 | Msa0195100:CDS | 40.0% |
| ! | AGGTGCCTTCTTTTACGTTT+TGG | - | chr2_1:11800680-11800699 | None:intergenic | 40.0% |
| AGTGTCACATGTTGATGTCA+AGG | - | chr2_1:11800700-11800719 | None:intergenic | 40.0% | |
| TTGACATCAACATGTGACAC+TGG | + | chr2_1:11800699-11800718 | Msa0195100:CDS | 40.0% | |
| ! | TTGGCTTTCCTCAATGTCTT+TGG | + | chr2_1:11800741-11800760 | Msa0195100:CDS | 40.0% |
| !! | CGGATTCGAGTTTTGTACAA+GGG | - | chr2_1:11800821-11800840 | None:intergenic | 40.0% |
| !! | TCGGATTCGAGTTTTGTACA+AGG | - | chr2_1:11800822-11800841 | None:intergenic | 40.0% |
| CTGTCAAGAAAAAGGGTTCA+AGG | + | chr2_1:11800851-11800870 | Msa0195100:CDS | 40.0% | |
| ! | TTACTTTCCCTCAGAGCATT+AGG | + | chr2_1:11800876-11800895 | Msa0195100:CDS | 40.0% |
| ! | TCTAAGGTAACACTTCCAAG+TGG | - | chr2_1:11800978-11800997 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGTTACCTTAGA+TGG | + | chr2_1:11800978-11800997 | Msa0195100:CDS | 40.0% |
| ! | GAAGATGAAGAACCCTGTTT+TGG | - | chr2_1:11801320-11801339 | None:intergenic | 40.0% |
| GCGTAAAGAATAAGGTTGCT+TGG | + | chr2_1:11801442-11801461 | Msa0195100:intron | 40.0% | |
| !! | TTAACTTGTGCTCTTAGCAG+TGG | + | chr2_1:11801680-11801699 | Msa0195100:intron | 40.0% |
| CTCAAAGTGAAACAACATGC+TGG | + | chr2_1:11802534-11802553 | Msa0195100:intron | 40.0% | |
| GGTGTGCAAGTGCAAATAAA+CGG | + | chr2_1:11802576-11802595 | Msa0195100:intron | 40.0% | |
| GGCACATGTTAAGGAACTTA+AGG | + | chr2_1:11802681-11802700 | Msa0195100:intron | 40.0% | |
| AGGTACCTGCAAGAGATAAA+AGG | - | chr2_1:11803087-11803106 | None:intergenic | 40.0% | |
| ! | CAGGTACTTTTACTTGTCTG+CGG | + | chr2_1:11803131-11803150 | Msa0195100:intron | 40.0% |
| GCTTTGTCAAGGTAGTAATC+TGG | - | chr2_1:11803174-11803193 | None:intergenic | 40.0% | |
| AAACCAACTTCCAACTATGG+AGG | + | chr2_1:11803429-11803448 | Msa0195100:CDS | 40.0% | |
| ATTCCTCCATAGTTGGAAGT+TGG | - | chr2_1:11803435-11803454 | None:intergenic | 40.0% | |
| TGGGGCCAAAACGTAAAAGA+AGG | + | chr2_1:11800672-11800691 | Msa0195100:CDS | 45.0% | |
| GCTTTCCTCAATGTCTTTGG+AGG | + | chr2_1:11800744-11800763 | Msa0195100:CDS | 45.0% | |
| ! | TTCCTCAATGTCTTTGGAGG+AGG | + | chr2_1:11800747-11800766 | Msa0195100:CDS | 45.0% |
| TTCCTCCTCCAAAGACATTG+AGG | - | chr2_1:11800752-11800771 | None:intergenic | 45.0% | |
| !! | GAGTTTTGTACAAGGGCTCT+CGG | - | chr2_1:11800814-11800833 | None:intergenic | 45.0% |
| AGCTTCTTCTGGTGAGCTAA+GGG | - | chr2_1:11800904-11800923 | None:intergenic | 45.0% | |
| TAGCTTCTTCTGGTGAGCTA+AGG | - | chr2_1:11800905-11800924 | None:intergenic | 45.0% | |
| AGTGGTCAATTTGGTCCACT+TGG | + | chr2_1:11800960-11800979 | Msa0195100:CDS | 45.0% | |
| TTTACTGGGATGACCTTGCT+AGG | + | chr2_1:11801033-11801052 | Msa0195100:CDS | 45.0% | |
| TTACTGGGATGACCTTGCTA+GGG | + | chr2_1:11801034-11801053 | Msa0195100:CDS | 45.0% | |
| TCTTGACCACATCCCAAAAC+AGG | + | chr2_1:11801304-11801323 | Msa0195100:intron | 45.0% | |
| CTTGACCACATCCCAAAACA+GGG | + | chr2_1:11801305-11801324 | Msa0195100:intron | 45.0% | |
| !!! | AAGAACCCTGTTTTGGGATG+TGG | - | chr2_1:11801313-11801332 | None:intergenic | 45.0% |
| GCTTGGTAGACCAAAGAAAC+TGG | + | chr2_1:11801459-11801478 | Msa0195100:intron | 45.0% | |
| AGACCAAAGAAACTGGCATC+TGG | + | chr2_1:11801466-11801485 | Msa0195100:intron | 45.0% | |
| AAGCCAGATGCCAGTTTCTT+TGG | - | chr2_1:11801472-11801491 | None:intergenic | 45.0% | |
| AAAGAAACTGGCATCTGGCT+TGG | + | chr2_1:11801471-11801490 | Msa0195100:intron | 45.0% | |
| ! | AAGAAACTGGCATCTGGCTT+GGG | + | chr2_1:11801472-11801491 | Msa0195100:intron | 45.0% |
| ! | AAAACGTGGTGTCTGGTCTT+TGG | - | chr2_1:11801500-11801519 | None:intergenic | 45.0% |
| TCACCTTCTGACGCATAAAG+AGG | - | chr2_1:11802486-11802505 | None:intergenic | 45.0% | |
| AACATGTGCCCTAAGAACCA+GGG | - | chr2_1:11802671-11802690 | None:intergenic | 45.0% | |
| TAACATGTGCCCTAAGAACC+AGG | - | chr2_1:11802672-11802691 | None:intergenic | 45.0% | |
| GGTTCTTAGGGCACATGTTA+AGG | + | chr2_1:11802672-11802691 | Msa0195100:intron | 45.0% | |
| TGCTGGTAGTCCCATGAAAA+CGG | - | chr2_1:11803337-11803356 | None:intergenic | 45.0% | |
| GGTGGTATATAACCACCACT+AGG | - | chr2_1:11803375-11803394 | None:intergenic | 45.0% | |
| !! | CAAGTTTCTGAGGCAATAGC+TGG | + | chr2_1:11803549-11803568 | Msa0195100:CDS | 45.0% |
| !!! | AATATCTTTTTTATAAAATT+GGG | - | chr2_1:11801275-11801294 | None:intergenic | 5.0% |
| !!! | AAATATCTTTTTTATAAAAT+TGG | - | chr2_1:11801276-11801295 | None:intergenic | 5.0% |
| !! | TACGTTTTGGCCCCAGTAGA+CGG | - | chr2_1:11800667-11800686 | None:intergenic | 50.0% |
| AAGGGCTCCTAATGCTCTGA+GGG | - | chr2_1:11800886-11800905 | None:intergenic | 50.0% | |
| TAAGGGCTCCTAATGCTCTG+AGG | - | chr2_1:11800887-11800906 | None:intergenic | 50.0% | |
| GATTGTCAAGGTCCCTAGCA+AGG | - | chr2_1:11801049-11801068 | None:intergenic | 50.0% | |
| GGCACGTGCAACACAGATTT+GGG | - | chr2_1:11801415-11801434 | None:intergenic | 50.0% | |
| AGGCACGTGCAACACAGATT+TGG | - | chr2_1:11801416-11801435 | None:intergenic | 50.0% | |
| GCACCTCTTTATGCGTCAGA+AGG | + | chr2_1:11802480-11802499 | Msa0195100:intron | 50.0% | |
| ! | TTTACAATCTCAGGGGGTGC+AGG | + | chr2_1:11802616-11802635 | Msa0195100:intron | 50.0% |
| ACATGTGCCCTAAGAACCAG+GGG | - | chr2_1:11802670-11802689 | None:intergenic | 50.0% | |
| ATGGTGGCATTGCCGTCTAC+TGG | + | chr2_1:11800652-11800671 | Msa0195100:CDS | 55.0% | |
| TGGTGGCATTGCCGTCTACT+GGG | + | chr2_1:11800653-11800672 | Msa0195100:CDS | 55.0% | |
| CTCTTAGCAGTGGCGTATCC+AGG | + | chr2_1:11801690-11801709 | Msa0195100:intron | 55.0% | |
| AGGTGCACACCCTCACTAAG+AGG | + | chr2_1:11802636-11802655 | Msa0195100:intron | 55.0% | |
| TGCACACCCTCACTAAGAGG+TGG | + | chr2_1:11802639-11802658 | Msa0195100:intron | 55.0% | |
| TCACCTGATGCAGCTCCTAG+TGG | + | chr2_1:11803357-11803376 | Msa0195100:CDS | 55.0% | |
| GGTGGCATTGCCGTCTACTG+GGG | + | chr2_1:11800654-11800673 | Msa0195100:CDS | 60.0% | |
| AGTGGCGTATCCAGGACCCT+GGG | + | chr2_1:11801698-11801717 | Msa0195100:intron | 60.0% | |
| GTATCCAGGACCCTGGGTCA+GGG | + | chr2_1:11801704-11801723 | Msa0195100:intron | 60.0% | |
| TATCCAGGACCCTGGGTCAG+GGG | + | chr2_1:11801705-11801724 | Msa0195100:intron | 60.0% | |
| !! | GTCAGGGGGTGCGGAGTTTT+TGG | + | chr2_1:11801720-11801739 | Msa0195100:intron | 60.0% |
| GCGGAGCCACCTCTTAGTGA+GGG | - | chr2_1:11802648-11802667 | None:intergenic | 60.0% | |
| TGTGCCCTAAGAACCAGGGG+CGG | - | chr2_1:11802667-11802686 | None:intergenic | 60.0% | |
| GGAGCTGCATCAGGTGATGC+TGG | - | chr2_1:11803354-11803373 | None:intergenic | 60.0% | |
| CCACCACTAGGAGCTGCATC+AGG | - | chr2_1:11803363-11803382 | None:intergenic | 60.0% | |
| CCTGATGCAGCTCCTAGTGG+TGG | + | chr2_1:11803360-11803379 | Msa0195100:CDS | 60.0% | |
| CAGTGGCGTATCCAGGACCC+TGG | + | chr2_1:11801697-11801716 | Msa0195100:intron | 65.0% | |
| CGTATCCAGGACCCTGGGTC+AGG | + | chr2_1:11801703-11801722 | Msa0195100:intron | 65.0% | |
| ATCCAGGACCCTGGGTCAGG+GGG | + | chr2_1:11801706-11801725 | Msa0195100:intron | 65.0% | |
| GGCGGAGCCACCTCTTAGTG+AGG | - | chr2_1:11802649-11802668 | None:intergenic | 65.0% | |
| ! | TGGCTCCGCCCCTGGTTCTT+AGG | + | chr2_1:11802659-11802678 | Msa0195100:intron | 65.0% |
| ! | GGCTCCGCCCCTGGTTCTTA+GGG | + | chr2_1:11802660-11802679 | Msa0195100:intron | 65.0% |
| ACTCCGCACCCCCTGACCCA+GGG | - | chr2_1:11801717-11801736 | None:intergenic | 70.0% | |
| AACTCCGCACCCCCTGACCC+AGG | - | chr2_1:11801718-11801737 | None:intergenic | 70.0% | |
| CTAAGAGGTGGCTCCGCCCC+TGG | + | chr2_1:11802651-11802670 | Msa0195100:intron | 70.0% | |
| CACCCCCTGACCCAGGGTCC+TGG | - | chr2_1:11801711-11801730 | None:intergenic | 75.0% | |
| GGACCCTGGGTCAGGGGGTG+CGG | + | chr2_1:11801711-11801730 | Msa0195100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 11800573 | 11803611 | 11800573 | ID=Msa0195100;Name=Msa0195100 |
| chr2_1 | mRNA | 11800573 | 11803611 | 11800573 | ID=Msa0195100-mRNA-1;Parent=Msa0195100;Name=Msa0195100-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|329 |
| chr2_1 | exon | 11800573 | 11801084 | 11800573 | ID=Msa0195100-mRNA-1:exon:5188;Parent=Msa0195100-mRNA-1 |
| chr2_1 | exon | 11803134 | 11803611 | 11803134 | ID=Msa0195100-mRNA-1:exon:5189;Parent=Msa0195100-mRNA-1 |
| chr2_1 | CDS | 11800573 | 11801084 | 11800573 | ID=Msa0195100-mRNA-1:cds;Parent=Msa0195100-mRNA-1 |
| chr2_1 | CDS | 11803134 | 11803611 | 11803134 | ID=Msa0195100-mRNA-1:cds;Parent=Msa0195100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
